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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6WLZ | 21845 | 2024-04-16 | 2020-04-20 | 2.9 | 3.19 | — | 3.1 | 0.006 | 0.66 | 0.0 | 0.05 | 17.77 | 0.01 | 2.132 | 7.08 | 7.27 | 4.6 | 95.4 | 0.0 | -3.16 | 0.74 | 0.85 | 3.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40657 | 5140 | 18 | 0 | 1 | 0 | 0 | logfile |
✘ | 5XTH | 6775 | 2024-04-07 | 2017-06-19 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115642 | 14193 | 113 | 0 | 63 | 0 | 0 | logfile |
✘ | 7WD7 | 32433 | 2024-04-15 | 2021-12-21 | 3.5 | 3.71 | — | 3.6 | 0.002 | 0.60 | 0.0 | 0.04 | 8.23 | 0.00 | 2.158 | 7.78 | 0.03 | 4.5 | 95.4 | 0.1 | -1.98 | 0.62 | 0.55 | 0.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35322 | 4530 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 7JT1 | 22466 | 2024-04-17 | 2020-08-16 | 3.3 | 3.84 | 3.70 | 3.5 | 0.007 | 0.99 | 0.0 | 0.08 | 22.46 | 0.01 | 2.234 | 13.03 | 1.20 | 10.8 | 87.1 | 2.0 | -5.23 | 0.88 | 0.83 | 1.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145600 | 5828 | 55 | 4659 | 0 | 0 | 0 | logfile |
✘ | 6TM5 | 10518 | 2024-04-07 | 2019-12-03 | 3.9 | 4.07 | — | 4.1 | 0.010 | 1.11 | 0.0 | 0.05 | 15.92 | 0.01 | 1.619 | 28.83 | 0.76 | 11.9 | 87.8 | 0.3 | -4.46 | 0.36 | 0.48 | 0.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63885 | 8117 | 23 | 0 | 3 | 0 | 0 | logfile |
✘ | 7VYE | 32202 | 2024-04-16 | 2021-11-14 | 3.1 | 3.13 | — | 3.1 | 0.007 | 0.91 | 2.0 | 0.05 | 17.86 | 0.01 | 2.053 | 11.90 | 0.27 | 4.3 | 95.6 | 0.1 | 1.26 | 0.75 | 0.86 | 3.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38846 | 4652 | 43 | 0 | 23 | 0 | 0 | logfile |
✘ | 5NV3 | 3699 | 2024-04-16 | 2017-05-03 | 3.39 | 3.43 | — | 3.4 | 0.007 | 1.22 | 2.0 | 0.07 | 14.59 | 0.00 | 2.164 | 2.84 | 0.94 | 5.6 | 94.2 | 0.2 | -2.82 | 0.09 | 0.16 | 3.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37816 | 4768 | 24 | 0 | 16 | 0 | 0 | logfile |
✘ | 8HTU | 35018 | 2024-04-06 | 2022-12-21 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57715 | 5089 | 51 | 0 | 366 | 2 | 0 | logfile |
✘ | 8DL7 | 27498 | 2024-04-06 | 2022-07-07 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6586 | 909 | 6 | 0 | 4 | 1 | 0 | logfile |
✘ | 5XNN | 6743 | 2024-04-07 | 2017-05-23 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10020 | 854 | 8 | 0 | 72 | 0 | 0 | logfile |
✘ | 6VoL | 21268 | 2024-04-16 | 2020-01-30 | 4.06 | 3.45 | — | 3.4 | 0.005 | 0.89 | 0.0 | 0.05 | 15.39 | 0.01 | 2.148 | 12.59 | 0.12 | 5.2 | 94.7 | 0.1 | -3.18 | 0.74 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38991 | 5165 | 32 | 0 | 7 | 0 | 0 | logfile |
✘ | 6KG7 | 9975 | 2024-04-17 | 2019-07-11 | 3.8 | 4.04 | — | 3.8 | 0.004 | 0.60 | 0.0 | 0.04 | 13.56 | 0.00 | 2.223 | 9.26 | 0.00 | 5.7 | 94.3 | 0.0 | -1.77 | 0.76 | 0.83 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44892 | 5451 | 6 | 0 | 12 | 0 | 0 | logfile |
✘ | 7VYH | 32205 | 2024-04-13 | 2021-11-14 | 2.9 | 3.02 | — | 3.1 | 0.007 | 0.74 | 0.0 | 0.05 | 14.62 | 0.01 | 2.198 | 8.58 | 0.00 | 3.6 | 96.3 | 0.1 | 0.11 | 0.75 | 0.86 | 3.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27933 | 3488 | 27 | 0 | 16 | 0 | 0 | logfile |
✘ | 7ATE | 11921 | 2024-04-06 | 2020-10-30 | 2.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9056 | 1098 | 10 | 0 | 9 | 145 | 0 | logfile |
✘ | 6BQ1 | 7129 | 2024-04-16 | 2017-11-27 | 3.6 | 3.71 | — | 3.6 | 0.007 | 0.95 | 6.0 | 0.05 | 9.33 | 0.01 | 1.899 | 27.65 | 0.11 | 5.2 | 94.8 | 0.0 | -3.86 | 0.60 | 0.49 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37163 | 4050 | 8 | 0 | 955 | 0 | 0 | logfile |
✘ | 6YBD | 10769 | 2024-04-14 | 2020-03-16 | 3.3 | 3.91 | 3.79 | 3.8 | 0.009 | 1.08 | 0.0 | 0.06 | 15.55 | 0.01 | 2.262 | 5.95 | 0.55 | 9.3 | 90.6 | 0.2 | -4.02 | 0.51 | 0.72 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30742 | 4421 | 19 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VY1 | 32191 | 2024-04-16 | 2021-11-13 | 3.3 | 3.60 | — | 3.6 | 0.007 | 0.82 | 0.0 | 0.04 | 18.70 | 0.00 | 2.061 | 9.13 | 0.20 | 4.4 | 95.6 | 0.0 | 1.76 | 0.77 | 0.89 | 2.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38899 | 4652 | 44 | 0 | 24 | 0 | 0 | logfile |
✘ | 8A94 | 15269 | 2024-04-14 | 2022-06-27 | 2.4 | 2.82 | 2.71 | 2.7 | 0.007 | 1.10 | 1.0 | 0.07 | 14.51 | 0.01 | 2.046 | 6.57 | 0.66 | 5.3 | 94.7 | 0.1 | -0.60 | 0.67 | 0.57 | 0.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30862 | 3864 | 19 | 0 | 57 | 0 | 0 | logfile |
✘ | 6VYH | 21460 | 2024-04-05 | 2020-02-26 | 3.0 | 3.13 | — | 3.1 | 0.013 | 1.11 | 1.0 | 0.06 | 14.40 | 0.01 | 1.922 | 11.42 | 2.00 | 8.8 | 90.0 | 1.2 | -4.54 | 0.66 | 0.81 | 2.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6093 | 860 | 5 | 0 | 2 | 1 | 0 | logfile |
✘ | 8BX5 | 16308 | 2024-04-08 | 2022-12-07 | 4.2 | 4.41 | 4.00 | 4.3 | 0.003 | 0.78 | 1.0 | 0.06 | 14.22 | 0.01 | 2.218 | 14.11 | 0.63 | 3.9 | 96.1 | 0.0 | -0.69 | 0.60 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12527 | 1630 | 13 | 0 | 4 | 4 | 0 | logfile |