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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8H0Y | 34418 | 2022-12-18 | 2022-09-30 | 2.85 | 3.06 | 2.88 | 3.0 | 0.008 | 0.82 | 0.0 | 0.06 | 13.16 | 0.01 | 2.274 | 2.64 | 0.00 | 3.2 | 96.8 | 0.0 | -1.19 | 0.81 | 0.86 | 3.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24999 | 3094 | 6 | 0 | 52 | 0 | 0 | logfile |
✘ | 8DZi | 27799 | 2022-12-18 | 2022-08-07 | 3.5 | 5.31 | 3.67 | 2.7 | 0.003 | 0.66 | 0.0 | 0.05 | 18.88 | 0.01 | 2.107 | 18.40 | 0.38 | 3.2 | 96.6 | 0.2 | 0.05 | 0.88 | 0.87 | 1.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31470 | 3918 | 32 | 0 | 63 | 0 | 0 | logfile |
✘ | 7XL3 | 33271 | 2022-12-18 | 2022-04-21 | 3.13 | 3.20 | — | 3.2 | 0.002 | 0.39 | 0.0 | 0.04 | 12.03 | 0.00 | 2.263 | 4.81 | 1.08 | 2.9 | 97.1 | 0.0 | -4.73 | 0.73 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25700 | 3480 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 7YZY | 14399 | 2022-12-20 | 2022-02-21 | 4.8 | 8.15 | — | 7.7 | 0.015 | 1.65 | 21.0 | 0.11 | 17.86 | 0.01 | 1.138 | 43.89 | 12.41 | 9.9 | 88.0 | 2.2 | -3.95 | 0.60 | 0.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20364 | 2514 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VC4 | 31888 | 2022-12-18 | 2021-09-01 | 3.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16311 | 1046 | 10 | 0 | 0 | 0 | 8079 | logfile |
✘ | 7VF9 | 31948 | 2022-12-18 | 2021-09-10 | 4.04 | 4.13 | — | 4.1 | 0.001 | 0.38 | 0.0 | 0.04 | 9.65 | 0.00 | 2.176 | 3.71 | 0.05 | 1.5 | 98.5 | 0.0 | -4.44 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24247 | 3425 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 7UY8 | 26867 | 2022-12-18 | 2022-05-06 | 4.5 | 8.56 | 4.38 | 4.2 | 0.003 | 0.63 | 1.0 | 0.05 | 14.55 | 0.00 | 2.207 | 8.85 | 0.00 | 6.1 | 93.9 | 0.0 | -0.66 | 0.79 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9552 | 1161 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 7UZE | 26886 | 2022-12-18 | 2022-05-09 | 2.4 | 2.27 | 2.42 | 2.3 | 0.003 | 0.58 | 0.0 | 0.04 | 15.32 | 0.00 | 2.040 | 3.82 | 0.68 | 3.0 | 96.6 | 0.4 | 1.69 | 0.66 | 0.88 | 6.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14969 | 988 | 12 | 0 | 4 | 113 | 7392 | logfile |
✘ | 8E70 | 27932 | 2022-12-18 | 2022-08-23 | 4.1 | 8.52 | 6.00 | 7.4 | 0.004 | 0.69 | 0.0 | 0.05 | 14.45 | 0.00 | 1.287 | 29.26 | 1.63 | 1.3 | 98.4 | 0.3 | -0.83 | 0.64 | 0.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21097 | 2502 | 13 | 61 | 18 | 0 | 63 | logfile |
✘ | 7UT9 | 26763 | 2022-12-18 | 2022-04-26 | 2.44 | 1.92 | 2.20 | 1.7 | 0.020 | 0.68 | 0.0 | 0.05 | 18.68 | 0.00 | 1.975 | 10.01 | 3.62 | 3.3 | 96.5 | 0.2 | 0.25 | 0.80 | 0.80 | 3.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20243 | 2538 | 18 | 0 | 13 | 60 | 0 | logfile |
✘ | 7VY1 | 32191 | 2022-12-20 | 2021-11-13 | 3.3 | 3.60 | — | 3.6 | 0.007 | 0.82 | 0.0 | 0.04 | 17.76 | 0.00 | 2.061 | 9.23 | 0.20 | 4.4 | 95.6 | 0.0 | 1.76 | 0.77 | 0.89 | 2.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38899 | 4652 | 44 | 0 | 24 | 0 | 0 | logfile |
✘ | 7UTA | 26764 | 2022-12-18 | 2022-04-26 | 2.4 | 1.90 | 2.36 | 1.6 | 0.030 | 0.77 | 0.0 | 0.05 | 18.18 | 0.00 | 1.975 | 12.61 | 2.71 | 4.1 | 95.7 | 0.3 | -0.49 | 0.78 | 0.79 | 3.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24323 | 3068 | 20 | 0 | 22 | 55 | 0 | logfile |
✘ | 7XTC | 33446 | 2022-12-18 | 2022-05-16 | 3.2 | 3.40 | 3.31 | 3.4 | 0.006 | 0.59 | 0.0 | 0.04 | 12.99 | 0.00 | 1.913 | 4.53 | 0.00 | 1.4 | 98.6 | 0.0 | 1.71 | 0.54 | 0.70 | 2.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16301 | 1038 | 5 | 0 | 2 | 0 | 8097 | logfile |
✘ | 8DDX | 27345 | 2022-12-19 | 2022-06-19 | 3.8 | 3.86 | 3.84 | 3.8 | 0.014 | 0.95 | 0.0 | 0.07 | 13.33 | 0.00 | 1.183 | 6.30 | 3.80 | 4.6 | 95.4 | 0.0 | -0.14 | 0.81 | 0.82 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35500 | 4295 | 14 | 0 | 81 | 0 | 0 | logfile |
✘ | 7XYA | 33515 | 2022-12-18 | 2022-06-01 | 3.3 | 3.39 | 3.24 | 3.2 | 0.004 | 0.68 | 1.0 | 0.04 | 18.79 | 0.00 | 1.962 | 11.61 | 1.00 | 4.0 | 95.9 | 0.0 | -0.19 | 0.81 | 0.84 | 1.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26550 | 3479 | 11 | 126 | 1 | 0 | 0 | logfile |
✘ | 7URC | 26708 | 2022-12-18 | 2022-04-21 | 3.14 | 3.74 | 3.25 | 3.6 | 0.017 | 0.98 | 0.0 | 0.88 | 13.59 | 0.00 | 1.182 | 10.27 | 0.00 | 3.5 | 96.5 | 0.0 | -3.02 | 0.58 | 0.86 | 3.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5561 | 658 | 4 | 0 | 12 | 0 | 0 | logfile |
✘ | 7XYB | 33516 | 2022-12-18 | 2022-06-01 | 3.7 | 4.48 | 3.71 | 3.3 | 0.005 | 0.75 | 1.0 | 0.05 | 16.21 | 0.00 | 1.956 | 17.43 | 0.62 | 4.8 | 95.0 | 0.2 | -0.49 | 0.87 | 0.82 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22525 | 3187 | 10 | 65 | 1 | 0 | 0 | logfile |
✔ | 7PSD | 13612 | 2022-12-18 | 2021-09-22 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9032 | 1160 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8D9M | 27266 | 2022-12-18 | 2022-06-10 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18248 | 2064 | 8 | 0 | 64 | 0 | 0 | logfile |
✘ | 7SCJ | 25036 | 2022-12-18 | 2021-09-28 | 3.4 | 2.31 | 2.97 | 2.0 | 0.004 | 0.58 | 0.0 | 0.05 | 11.19 | 0.01 | 2.200 | 9.38 | 0.00 | 5.7 | 94.3 | 0.0 | -0.25 | 0.75 | 0.72 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9336 | 1131 | 6 | 2 | 7 | 0 | 0 | logfile |