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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7BoX | 30135 | 2022-05-14 | 2020-03-20 | 3.8 | 3.29 | — | 3.8 | 0.012 | 1.46 | 5.0 | 0.07 | 12.93 | 0.01 | 2.236 | 9.53 | 0.05 | 8.1 | 91.5 | 0.5 | -4.94 | 0.78 | 0.81 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18618 | 2334 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7AHQ | 11790 | 2022-05-13 | 2020-09-25 | 3.6 | 4.20 | 3.44 | 3.7 | 0.011 | 1.08 | 0.0 | 0.07 | 14.40 | 0.01 | 1.179 | 8.04 | 0.00 | 2.5 | 97.5 | 0.0 | -2.65 | 0.77 | 0.82 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15055 | 1855 | 10 | 0 | 20 | 0 | 0 | logfile |
✘ | 6VXK | 21442 | 2022-05-14 | 2020-02-22 | 3.1 | 3.57 | — | 3.2 | 0.011 | 0.83 | 0.0 | 0.05 | 14.64 | 0.00 | 2.122 | 15.48 | 8.05 | 10.5 | 89.5 | 0.0 | -3.69 | 0.86 | 0.88 | 3.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17418 | 2254 | 8 | 0 | 18 | 0 | 0 | logfile |
✘ | 7JMG | 22393 | 2022-05-14 | 2020-07-31 | 4.5 | 7.15 | — | 4.3 | 0.005 | 0.93 | 0.0 | 0.05 | 9.82 | 0.01 | 1.373 | 7.47 | 0.27 | 10.3 | 89.6 | 0.1 | -4.77 | 0.57 | 0.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 6YMY | 10848 | 2022-05-13 | 2020-04-10 | 3.41 | 3.81 | 3.50 | 3.7 | 0.008 | 1.25 | 0.0 | 0.06 | 16.55 | 0.01 | 0.424 | 7.47 | 0.27 | 8.9 | 91.0 | 0.1 | -6.00 | 0.68 | 0.82 | 2.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14612 | 1766 | 19 | 0 | 16 | 0 | 0 | logfile |
✘ | 7D99 | 30617 | 2022-05-13 | 2020-10-12 | 2.9 | 3.02 | — | 3.1 | 0.009 | 1.09 | 0.0 | 0.06 | 9.63 | 0.01 | 2.187 | 2.92 | 0.41 | 4.7 | 95.1 | 0.1 | -5.36 | 0.71 | 0.85 | 3.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13800 | 1782 | 8 | 0 | 14 | 0 | 0 | logfile |
✘ | 6TU7 | 10590 | 2022-05-15 | 2020-01-03 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 7CZY | 30521 | 2022-05-16 | 2020-09-09 | 3.3 | 3.38 | — | 3.3 | 0.011 | 1.00 | 0.0 | 0.07 | 17.68 | 0.01 | 1.865 | 25.81 | 12.01 | 10.3 | 87.0 | 2.6 | -3.80 | 0.62 | 0.70 | 1.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31186 | 3880 | 33 | 0 | 76 | 0 | 0 | logfile |
✘ | 7CF9 | 30343 | 2022-05-14 | 2020-06-24 | 4.7 | 4.24 | 5.21 | 4.0 | 0.006 | 1.23 | 0.0 | 0.06 | 16.02 | 0.01 | 1.538 | 5.56 | 1.67 | 6.2 | 93.7 | 0.1 | -4.86 | 0.79 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 116104 | 14416 | 12 | 0 | 1820 | 0 | 0 | logfile |
✘ | 7KY6 | 23069 | 2022-05-13 | 2020-12-07 | 3.1 | 3.28 | — | 3.2 | 0.006 | 0.68 | 0.0 | 0.04 | 17.68 | 0.00 | 2.092 | 12.88 | 7.34 | 6.9 | 92.9 | 0.2 | -2.79 | 0.69 | 0.85 | 2.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10729 | 1322 | 7 | 0 | 10 | 0 | 0 | logfile |
✘ | 7ND4 | 12275 | 2022-05-16 | 2021-01-30 | 3.6 | 3.31 | — | 3.2 | 0.003 | 0.58 | 3.0 | 0.05 | 11.05 | 0.00 | 2.233 | 3.89 | 0.28 | 4.1 | 95.6 | 0.2 | -0.12 | 0.74 | 0.79 | 2.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29848 | 3729 | 30 | 0 | 71 | 0 | 0 | logfile |
✘ | 6TM2 | 10517 | 2022-05-12 | 2019-12-03 | 2.95 | 3.12 | — | 3.1 | 0.008 | 1.01 | 0.0 | 0.06 | 10.00 | 0.01 | 2.181 | 3.02 | 0.10 | 11.3 | 88.7 | 0.0 | -4.14 | 0.44 | 0.47 | 3.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 55254 | 7230 | 60 | 0 | 54 | 138 | 0 | logfile |
✘ | 7ND8 | 12279 | 2022-05-15 | 2021-01-30 | 3.5 | 3.96 | — | 3.8 | 0.004 | 0.66 | 0.0 | 0.05 | 10.84 | 0.00 | 2.153 | 4.19 | 0.30 | 3.5 | 96.3 | 0.2 | 0.12 | 0.82 | 0.76 | 1.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27659 | 3447 | 23 | 0 | 60 | 0 | 0 | logfile |
✘ | 6YXR | 10995 | 2022-05-13 | 2020-05-03 | 3.4 | 3.53 | 3.43 | 3.5 | 0.019 | 2.23 | 2.0 | 0.13 | 19.52 | 0.02 | 1.197 | 27.04 | 0.44 | 4.1 | 95.7 | 0.3 | -3.53 | 0.67 | 0.76 | 2.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31910 | 2783 | 20 | 0 | 194 | 0 | 0 | logfile |
✘ | 6S6B | 10102 | 2022-05-14 | 2019-07-02 | 2.75 | 3.35 | 3.07 | 3.2 | 0.005 | 0.76 | 0.0 | 0.05 | 14.62 | 0.00 | 1.961 | 19.12 | 0.15 | 15.3 | 84.3 | 0.4 | -5.13 | 0.77 | 0.82 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66914 | 8194 | 39 | 51 | 1 | 0 | 0 | logfile |
✘ | 7CFT | 30347 | 2022-05-13 | 2020-06-28 | 3.9 | 4.07 | — | 4.0 | 0.009 | 0.98 | 0.0 | 0.06 | 15.17 | 0.01 | 2.276 | 6.04 | 1.75 | 7.4 | 92.6 | 0.0 | -5.25 | 0.81 | 0.84 | 2.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11283 | 1425 | 9 | 0 | 6 | 0 | 0 | logfile |
✘ | 6SL5 | 10236 | 2022-05-18 | 2019-08-18 | 2.84 | 2.97 | 2.83 | 3.0 | 0.026 | 2.95 | 9.0 | 0.13 | 20.95 | 0.02 | 1.187 | 20.83 | 0.73 | 7.3 | 92.0 | 0.7 | -3.12 | 0.71 | 0.77 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43789 | 3744 | 36 | 0 | 292 | 0 | 0 | logfile |
✘ | 6WTi | 21897 | 2022-05-13 | 2020-05-02 | 2.38 | 2.42 | — | 2.5 | 0.010 | 1.20 | 5.0 | 0.07 | 19.47 | 0.01 | 1.179 | 9.26 | 11.79 | 4.6 | 95.3 | 0.1 | -3.48 | 0.60 | 0.74 | 1.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9980 | 1207 | 8 | 0 | 14 | 0 | 0 | logfile |
✘ | 6PLS | 20374 | 2022-05-13 | 2019-07-01 | 3.0 | 3.13 | — | 3.1 | 0.008 | 1.03 | 0.0 | 0.06 | 8.94 | 0.01 | 1.523 | 4.94 | 0.00 | 2.6 | 97.4 | 0.0 | -4.00 | 0.71 | 0.85 | 5.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14610 | 1720 | 15 | 0 | 75 | 0 | 0 | logfile |
✘ | 7ASD | 11892 | 2022-05-16 | 2020-10-27 | 3.5 | 3.68 | 3.48 | 3.5 | 0.003 | 0.64 | 0.0 | 0.06 | 8.91 | 0.00 | 2.153 | 5.28 | 2.16 | 2.2 | 97.8 | 0.0 | 0.30 | 0.81 | 0.83 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30296 | 3664 | 48 | 0 | 72 | 0 | 0 | logfile |