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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6KG7 | 9975 | 2024-04-17 | 2019-07-11 | 3.8 | 4.04 | — | 3.8 | 0.004 | 0.60 | 0.0 | 0.04 | 13.56 | 0.00 | 2.223 | 9.26 | 0.00 | 5.7 | 94.3 | 0.0 | -1.77 | 0.76 | 0.83 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44892 | 5451 | 6 | 0 | 12 | 0 | 0 | logfile |
✘ | 5NV3 | 3699 | 2024-04-16 | 2017-05-03 | 3.39 | 3.43 | — | 3.4 | 0.007 | 1.22 | 2.0 | 0.07 | 14.59 | 0.00 | 2.164 | 2.84 | 0.94 | 5.6 | 94.2 | 0.2 | -2.82 | 0.09 | 0.16 | 3.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37816 | 4768 | 24 | 0 | 16 | 0 | 0 | logfile |
✘ | 6X6A | 22074 | 2024-04-10 | 2020-05-27 | 3.6 | 3.58 | — | 3.4 | 0.010 | 1.29 | 0.0 | 0.08 | 14.43 | 0.01 | 2.206 | 13.75 | 0.45 | 7.5 | 92.4 | 0.1 | -2.80 | 0.86 | 0.83 | 3.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20240 | 2524 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 6ZDG | 11173 | 2024-04-13 | 2020-06-14 | 4.7 | 4.97 | — | 4.8 | 0.004 | 0.50 | 0.0 | 0.04 | 9.08 | 0.00 | 1.891 | 7.24 | 2.41 | 3.9 | 96.1 | 0.0 | 0.05 | 0.71 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28548 | 1884 | 12 | 0 | 3 | 0 | 13995 | logfile |
✘ | 7SiD | 25141 | 2024-04-17 | 2021-10-13 | 2.53 | 2.17 | — | 2.7 | 0.003 | 0.53 | 0.0 | 0.04 | 14.38 | 0.01 | 2.072 | 4.12 | 0.77 | 1.7 | 98.3 | 0.0 | 2.49 | 0.61 | 0.61 | 1.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44650 | 5566 | 6 | 0 | 4 | 0 | 0 | logfile |
✘ | 6SCJ | 10141 | 2024-04-16 | 2019-07-24 | 3.6 | 3.92 | — | 3.8 | 0.005 | 0.99 | 0.0 | 0.06 | 11.34 | 0.01 | 2.235 | 4.85 | 0.14 | 13.3 | 86.6 | 0.1 | -4.97 | 0.78 | 0.76 | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39884 | 5102 | 6 | 0 | 36 | 0 | 0 | logfile |
✘ | 5BK4 | 9400 | 2024-04-07 | 2017-09-12 | 3.9 | 4.14 | — | 4.1 | 0.008 | 1.24 | 0.0 | 0.06 | 14.59 | 0.01 | 2.234 | 5.12 | 1.24 | 12.2 | 87.6 | 0.2 | -4.81 | 0.81 | 0.79 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62482 | 7636 | 22 | 120 | 8 | 0 | 0 | logfile |
✘ | 6YEW | 10796 | 2024-04-13 | 2020-03-25 | 3.2 | 3.44 | — | 3.1 | 0.011 | 0.90 | 0.0 | 0.05 | 15.02 | 0.00 | 1.989 | 13.98 | 2.83 | 7.4 | 92.4 | 0.2 | -3.04 | 0.85 | 0.81 | 2.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 88700 | 11425 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7P5Y | 13208 | 2024-04-16 | 2021-07-15 | 3.29 | 2.97 | 3.19 | 3.1 | 0.002 | 0.49 | 0.0 | 0.04 | 11.33 | 0.00 | 2.158 | 10.43 | 2.64 | 3.5 | 96.5 | 0.0 | -0.32 | 0.72 | 0.72 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41106 | 5028 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 8A94 | 15269 | 2024-04-14 | 2022-06-27 | 2.4 | 2.82 | 2.71 | 2.7 | 0.007 | 1.10 | 1.0 | 0.07 | 14.51 | 0.01 | 2.046 | 6.57 | 0.66 | 5.3 | 94.7 | 0.1 | -0.60 | 0.67 | 0.57 | 0.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30862 | 3864 | 19 | 0 | 57 | 0 | 0 | logfile |
✘ | 5XNN | 6743 | 2024-04-07 | 2017-05-23 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10020 | 854 | 8 | 0 | 72 | 0 | 0 | logfile |
✘ | 6Z2K | 11042 | 2024-04-16 | 2020-05-16 | 4.5 | 4.70 | 4.41 | 4.5 | 0.006 | 0.99 | 0.0 | 0.27 | 16.15 | 0.01 | 1.989 | 5.20 | 0.15 | 9.0 | 90.8 | 0.2 | -3.76 | 0.80 | 0.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37843 | 2379 | 19 | 0 | 16 | 0 | 18577 | logfile |
✘ | 7RL5 | 24516 | 2024-04-10 | 2021-07-23 | 3.8 | 3.61 | — | 3.8 | 0.013 | 2.04 | 24.0 | 0.11 | 16.71 | 0.02 | 0.524 | 3.05 | 2.05 | 3.3 | 96.3 | 0.4 | -1.86 | 0.40 | 0.52 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106032 | 6708 | 24 | 0 | 24 | 0 | 52716 | logfile |
✘ | 7R88 | 24311 | 2024-04-07 | 2021-06-26 | 3.5 | 3.76 | — | 3.7 | 0.002 | 0.45 | 0.0 | 0.04 | 12.49 | 0.00 | 2.274 | 5.35 | 1.02 | 3.5 | 96.5 | 0.0 | -1.50 | 0.69 | 0.85 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10787 | 1368 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VYH | 32205 | 2024-04-13 | 2021-11-14 | 2.9 | 3.02 | — | 3.1 | 0.007 | 0.74 | 0.0 | 0.05 | 14.62 | 0.01 | 2.198 | 8.58 | 0.00 | 3.6 | 96.3 | 0.1 | 0.11 | 0.75 | 0.86 | 3.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27933 | 3488 | 27 | 0 | 16 | 0 | 0 | logfile |
✘ | 7DGR | 30674 | 2024-04-05 | 2020-11-12 | 4.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 107305 | 13811 | 102 | 0 | 37 | 0 | 0 | logfile |
✘ | 7NWL | 12634 | 2024-04-08 | 2021-03-17 | 3.1 | 3.95 | 3.38 | 3.5 | 0.013 | 1.48 | 0.0 | 0.11 | 14.02 | 0.02 | 1.790 | 40.24 | 0.93 | 1.9 | 98.0 | 0.1 | 0.97 | 0.80 | 0.66 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13904 | 1747 | 17 | 0 | 40 | 0 | 0 | logfile |
✘ | 5FJ9 | 3179 | 2024-04-16 | 2015-10-06 | 4.6 | 4.67 | — | 4.6 | 0.004 | 1.21 | 0.0 | 0.05 | 12.45 | 0.00 | 1.842 | 13.04 | 4.04 | 16.0 | 82.8 | 1.1 | -4.61 | 0.80 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38680 | 4845 | 22 | 0 | 41 | 0 | 0 | logfile |
✘ | 7RGQ | 24454 | 2024-04-06 | 2021-07-15 | 3.9 | 3.65 | — | 3.7 | 0.013 | 1.98 | 9.0 | 0.09 | 19.50 | 0.01 | 2.357 | 2.12 | 2.74 | 6.9 | 92.4 | 0.7 | -1.98 | 0.56 | 0.81 | 3.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 59832 | 3848 | 16 | 0 | 40 | 0 | 29544 | logfile |
✘ | 7DZ7 | 30925 | 2024-04-10 | 2021-01-23 | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 69647 | 5998 | 55 | 0 | 471 | 0 | 0 | logfile |