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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6EU0 | 3955 | 2024-03-25 | 2017-10-27 | 4.0 | 4.06 | — | 4.0 | 0.005 | 1.08 | 0.0 | 0.06 | 14.42 | 0.01 | 1.879 | 8.44 | 0.53 | 15.4 | 84.3 | 0.3 | -5.25 | 0.72 | 0.66 | — | 4.0 | 0.006 | 0.92 | 0.0 | 0.05 | 18.27 | 0.01 | 1.847 | 21.74 | 4.61 | 17.9 | 81.8 | 0.3 | -3.03 | 2.58 | 0.78 | 0.75 | — | 48918 | 5949 | 28 | 108 | 8 | 0 | 0 | logfile |
✘ | 6HWH | 0289 | 2024-03-24 | 2018-10-12 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40632 | 4916 | 40 | 0 | 420 | 0 | 0 | logfile |
✘ | 7VYH | 32205 | 2024-03-20 | 2021-11-14 | 2.9 | 3.02 | — | 3.1 | 0.007 | 0.74 | 0.0 | 0.05 | 14.62 | 0.01 | 2.198 | 8.58 | 0.00 | 3.6 | 96.3 | 0.1 | 0.11 | 0.75 | 0.86 | 3.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27933 | 3488 | 27 | 0 | 16 | 0 | 0 | logfile |
✔ | 7DXK | 30912 | 2024-03-18 | 2021-01-19 | 4.1 | 4.08 | — | 4.0 | 0.007 | 1.05 | 0.0 | 0.05 | 15.55 | 0.01 | 2.251 | 5.93 | 0.48 | 5.2 | 94.6 | 0.2 | -3.75 | 0.79 | 0.81 | — | 4.0 | 0.003 | 0.73 | 0.0 | 0.04 | 14.56 | 0.00 | 2.014 | 12.30 | 0.00 | 5.3 | 94.6 | 0.0 | 0.83 | 3.10 | 0.79 | 0.79 | — | 20491 | 2621 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DMF | 27535 | 2024-03-10 | 2022-07-08 | 4.0 | 4.71 | 3.73 | 4.1 | 0.003 | 0.64 | 0.0 | 0.05 | 14.28 | 0.00 | 1.977 | 13.96 | 0.00 | 5.0 | 95.0 | 0.0 | -0.20 | 0.81 | 0.83 | — | 4.1 | 0.005 | 0.73 | 0.0 | 0.04 | 16.01 | 0.00 | 1.812 | 21.12 | 1.14 | 7.4 | 92.6 | 0.0 | -0.69 | 0.44 | 0.82 | 0.84 | — | 5670 | 718 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7EZ0 | 31385 | 2024-03-11 | 2021-06-01 | 3.14 | 3.26 | — | 3.2 | 0.003 | 0.56 | 0.0 | 0.03 | 23.64 | 0.00 | 1.804 | 2.25 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.74 | 0.79 | — | 3.2 | 0.006 | 0.70 | 0.0 | 0.04 | 23.85 | 0.00 | 1.860 | 8.26 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.55 | 0.77 | 0.86 | — | 8306 | 0 | 1 | 387 | 27 | 0 | 0 | logfile |
✔ | 7TNK | 26012 | 2024-03-17 | 2022-01-21 | 4.5 | 3.85 | — | 3.8 | 0.005 | 1.01 | 0.0 | 0.05 | 11.81 | 0.01 | 2.244 | 4.82 | 0.40 | 5.0 | 94.9 | 0.1 | -4.97 | 0.71 | 0.73 | — | 3.8 | 0.004 | 0.67 | 0.0 | 0.04 | 13.07 | 0.00 | 2.132 | 14.12 | 0.00 | 5.2 | 94.8 | 0.0 | -0.22 | 0.93 | 0.72 | 0.74 | — | 18934 | 2419 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 5XNN | 6743 | 2024-03-14 | 2017-05-23 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10020 | 854 | 8 | 0 | 72 | 0 | 0 | logfile |
✔ | 6QLD | 4579 | 2024-03-21 | 2019-01-31 | 4.15 | 4.29 | — | 4.1 | 0.004 | 0.86 | 1.0 | 0.05 | 21.70 | 0.01 | 2.289 | 5.03 | 0.25 | 5.1 | 94.8 | 0.2 | -3.52 | 0.83 | 0.76 | — | 4.1 | 0.004 | 0.67 | 0.0 | 0.04 | 21.26 | 0.00 | 2.175 | 13.11 | 0.12 | 5.8 | 94.2 | 0.0 | 1.00 | 0.70 | 0.83 | 0.76 | — | 29086 | 3157 | 22 | 248 | 0 | 0 | 0 | logfile |
✔ | 7PXD | 13698 | 2024-03-15 | 2021-10-08 | 4.0 | 2.58 | — | 2.8 | 0.006 | 0.93 | 0.0 | 0.05 | 14.20 | 0.01 | 2.068 | 8.55 | 3.29 | 4.0 | 95.9 | 0.1 | -1.07 | 0.68 | 0.67 | — | 2.8 | 0.003 | 0.57 | 0.0 | 0.04 | 15.45 | 0.00 | 1.976 | 7.08 | 1.36 | 2.4 | 97.6 | 0.0 | 1.79 | 0.77 | 0.71 | 0.71 | — | 68900 | 9015 | 42 | 0 | 12 | 0 | 0 | logfile |
✔ | 6ND4 | 0441 | 2024-03-12 | 2018-12-13 | 4.3 | 4.41 | — | 4.2 | 0.010 | 1.03 | 0.0 | 0.06 | 19.33 | 0.02 | 2.230 | 5.19 | 0.00 | 6.4 | 93.6 | 0.1 | -3.63 | 0.80 | 0.66 | — | 4.2 | 0.007 | 1.13 | 0.0 | 0.05 | 19.70 | 0.01 | 1.949 | 22.46 | 0.00 | 20.7 | 79.2 | 0.0 | -4.10 | 1.19 | 0.84 | 0.77 | — | 63993 | 9225 | 30 | 551 | 1306 | 0 | 0 | logfile |
✔ | 7TNo | 26016 | 2024-03-17 | 2022-01-21 | 4.02 | 3.34 | — | 3.4 | 0.004 | 0.94 | 0.0 | 0.05 | 12.11 | 0.01 | 2.023 | 4.43 | 0.65 | 3.7 | 96.1 | 0.2 | -5.12 | 0.69 | 0.76 | — | 3.4 | 0.003 | 0.68 | 0.0 | 0.04 | 13.39 | 0.00 | 2.155 | 10.51 | 0.00 | 3.3 | 96.7 | 0.0 | 0.06 | 0.91 | 0.70 | 0.77 | — | 18810 | 2405 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 7R88 | 24311 | 2024-03-15 | 2021-06-26 | 3.5 | 3.76 | — | 3.7 | 0.002 | 0.45 | 0.0 | 0.04 | 12.49 | 0.00 | 2.274 | 5.35 | 1.02 | 3.5 | 96.5 | 0.0 | -1.50 | 0.69 | 0.85 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10787 | 1368 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5YKE | 6831 | 2024-03-21 | 2017-10-14 | 4.11 | 4.22 | 3.92 | 4.1 | 0.005 | 0.81 | 0.0 | 0.05 | 13.61 | 0.01 | 2.246 | 11.57 | 7.60 | 3.7 | 95.9 | 0.4 | -1.76 | 0.66 | 0.76 | — | 4.1 | 0.003 | 0.69 | 0.0 | 0.04 | 12.93 | 0.00 | 2.230 | 10.01 | 0.00 | 2.1 | 97.8 | 0.1 | 2.05 | 1.00 | 0.68 | 0.78 | — | 30636 | 3912 | 12 | 0 | 4 | 0 | 0 | logfile |
✔ | 5UoW | 8579 | 2024-03-22 | 2017-02-01 | 4.5 | 8.74 | — | 7.2 | 0.011 | 1.84 | 17.0 | 0.10 | 14.83 | 0.02 | 1.072 | 54.88 | 10.98 | 4.5 | 94.5 | 1.0 | -0.55 | 0.64 | 0.54 | — | 3.9 | 0.003 | 0.70 | 0.0 | 0.04 | 11.31 | 0.00 | 2.109 | 19.37 | 0.05 | 7.0 | 92.8 | 0.2 | -0.45 | 2.58 | 0.78 | 0.81 | — | 24347 | 3186 | 15 | 0 | 446 | 0 | 0 | logfile |
✔ | 7F5U | 31467 | 2024-03-18 | 2021-06-22 | 4.1 | 4.16 | — | 3.9 | 0.007 | 0.80 | 0.0 | 0.04 | 14.71 | 0.00 | 2.101 | 24.28 | 0.00 | 12.3 | 87.6 | 0.1 | -4.58 | 0.82 | 0.84 | — | 3.9 | 0.003 | 0.68 | 0.0 | 0.04 | 14.28 | 0.00 | 2.111 | 15.63 | 0.00 | 8.5 | 91.4 | 0.1 | -1.11 | 0.68 | 0.82 | 0.82 | — | 20744 | 2740 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5oAF | 3773 | 2024-03-18 | 2017-06-21 | 4.06 | 4.15 | — | 4.1 | 0.001 | 0.47 | 0.0 | 0.04 | 9.13 | 0.00 | 2.165 | 12.39 | 0.28 | 2.4 | 97.6 | 0.0 | -2.75 | 0.69 | 0.67 | — | 4.1 | 0.003 | 0.74 | 0.0 | 0.04 | 12.91 | 0.00 | 2.114 | 15.64 | 0.00 | 5.0 | 94.9 | 0.1 | -0.93 | 3.58 | 0.73 | 0.74 | — | 19748 | 2538 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 6X5i | 22051 | 2024-03-11 | 2020-05-26 | 4.3 | 4.27 | — | 4.0 | 0.060 | 2.79 | 0.0 | 0.16 | 29.93 | 0.00 | 2.206 | 29.57 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.70 | 0.70 | — | 4.0 | 0.011 | 1.53 | 0.0 | 0.13 | 24.62 | 0.00 | 1.571 | 57.36 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.30 | 0.69 | 0.74 | — | 4480 | 70 | 70 | 0 | 280 | 0 | 0 | logfile |
✔ | 6GY6 | 0088 | 2024-03-16 | 2018-06-28 | 4.0 | 3.98 | — | 3.8 | 0.006 | 0.88 | 0.0 | 0.05 | 10.55 | 0.01 | 2.234 | 4.84 | 1.08 | 2.6 | 97.4 | 0.0 | -4.40 | 0.90 | 0.84 | — | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 14.48 | 0.00 | 2.142 | 10.69 | 1.61 | 1.8 | 98.2 | 0.0 | 2.84 | 0.92 | 0.90 | 0.85 | — | 72462 | 9139 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 6EF1 | 9043 | 2024-03-19 | 2018-08-15 | 4.73 | 3.61 | — | 4.2 | 0.009 | 0.99 | 0.0 | 0.05 | 12.32 | 0.01 | 2.040 | 7.26 | 0.00 | 14.5 | 85.5 | 0.0 | -5.20 | 0.59 | 0.78 | — | 4.2 | 0.003 | 0.75 | 0.0 | 0.04 | 13.10 | 0.00 | 2.117 | 11.98 | 0.05 | 7.8 | 92.2 | 0.0 | -2.14 | 1.69 | 0.60 | 0.80 | — | 23658 | 3294 | 20 | 0 | 6 | 0 | 0 | logfile |