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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8SoK | 40660 | 2024-03-23 | 2023-04-28 | 4.1 | 4.25 | 4.03 | 4.0 | 0.005 | 0.76 | 0.0 | 0.09 | 13.71 | 0.01 | 2.084 | 5.31 | 1.02 | 9.8 | 89.7 | 0.6 | -3.40 | 0.77 | 0.67 | — | 4.0 | 0.003 | 0.61 | 0.0 | 0.09 | 13.54 | 0.00 | 1.895 | 8.73 | 0.05 | 8.3 | 91.6 | 0.1 | -1.42 | 0.65 | 0.75 | 0.61 | — | 37162 | 2335 | 8 | 10 | 2 | 0 | 18588 | logfile |
✘ | 8APK | 15573 | 2024-03-15 | 2022-08-09 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126493 | 7873 | 61 | 0 | 36 | 0 | 62392 | logfile |
✔ | 6oEH | 20020 | 2024-03-22 | 2019-03-27 | 3.8 | 3.93 | — | 3.7 | 0.010 | 1.38 | 0.0 | 0.07 | 11.62 | 0.01 | 2.381 | 2.81 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.38 | 0.77 | — | 3.7 | 0.007 | 1.05 | 0.0 | 0.04 | 5.09 | 0.00 | 2.203 | 12.28 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.52 | 0.40 | 0.80 | — | 32900 | 0 | 14 | 0 | 6580 | 0 | 0 | logfile |
✘ | 6ZZX | 11588 | 2024-03-11 | 2020-08-05 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56369 | 4684 | 68 | 0 | 403 | 99 | 0 | logfile |
✘ | 7PNK | 13548 | 2024-03-11 | 2021-09-07 | 3.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60673 | 6142 | 74 | 0 | 250 | 0 | 0 | logfile |
✔ | 6oDJ | 20021 | 2024-03-19 | 2019-03-26 | 3.5 | 3.75 | — | 3.7 | 0.009 | 1.50 | 0.0 | 0.07 | 11.32 | 0.01 | 2.438 | 2.03 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.81 | 0.81 | — | 3.7 | 0.012 | 1.73 | 0.0 | 0.06 | 7.96 | 0.00 | 2.090 | 10.56 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.60 | 0.82 | 0.83 | — | 25415 | 0 | 17 | 0 | 5083 | 0 | 0 | logfile |
✘ | 6X36 | 22019 | 2024-03-21 | 2020-05-21 | 4.7 | 4.72 | 5.52 | 4.6 | 0.002 | 0.53 | 0.0 | 0.03 | 10.40 | 0.00 | 2.228 | 5.80 | 0.00 | 2.2 | 97.8 | 0.0 | 0.96 | 0.76 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100164 | 13692 | 12 | 0 | 1376 | 0 | 0 | logfile |
✘ | 6RDP | 4826 | 2024-03-22 | 2019-04-12 | 2.8 | 2.95 | 2.97 | 3.0 | 0.011 | 1.07 | 0.0 | 0.06 | 14.80 | 0.01 | 2.023 | 6.71 | 0.65 | 5.4 | 94.3 | 0.3 | -3.78 | 0.67 | 0.83 | 3.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33891 | 4502 | 25 | 0 | 10 | 0 | 0 | logfile |
✘ | 8CRS | 26957 | 2024-03-17 | 2022-05-11 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17888 | 1998 | 12 | 0 | 12 | 1692 | 0 | logfile |
✘ | 8DBX | 27316 | 2024-03-17 | 2022-06-14 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16968 | 1998 | 12 | 0 | 10 | 914 | 0 | logfile |
✘ | 7oUi | 13078 | 2024-03-18 | 2021-06-11 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 84427 | 8342 | 108 | 0 | 374 | 139 | 0 | logfile |
✔ | 6RDR | 4828 | 2024-03-10 | 2019-04-12 | 4.1 | 4.19 | 4.13 | 4.1 | 0.007 | 0.94 | 0.0 | 0.05 | 15.03 | 0.01 | 1.908 | 6.99 | 0.44 | 5.2 | 94.6 | 0.2 | -4.22 | 0.67 | 0.74 | — | 4.1 | 0.003 | 0.65 | 0.0 | 0.04 | 14.01 | 0.00 | 1.906 | 12.77 | 0.02 | 4.3 | 95.6 | 0.1 | -0.31 | 1.29 | 0.69 | 0.78 | — | 53748 | 7103 | 37 | 0 | 11 | 0 | 0 | logfile |
✘ | 7JRo | 22447 | 2024-03-15 | 2020-08-12 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12747 | 1492 | 17 | 0 | 26 | 0 | 0 | logfile |
✘ | 7TYR | 26192 | 2024-03-25 | 2022-02-14 | 3.33 | 3.67 | 3.41 | 3.5 | 0.004 | 0.76 | 0.0 | 0.05 | 19.61 | 0.00 | 2.171 | 8.15 | 2.70 | 5.1 | 94.7 | 0.2 | 0.19 | 0.79 | 0.79 | 1.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31610 | 3957 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7UoP | 26652 | 2024-03-16 | 2022-04-13 | 2.8 | 3.24 | 2.81 | 3.1 | 0.004 | 0.59 | 0.0 | 0.05 | 12.28 | 0.00 | 2.126 | 2.36 | 1.02 | 2.4 | 97.6 | 0.0 | 0.45 | 0.81 | 0.83 | 3.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15702 | 2010 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 8APG | 15570 | 2024-03-16 | 2022-08-09 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126490 | 7873 | 61 | 0 | 36 | 0 | 62387 | logfile |
✔ | 6RET | 4856 | 2024-03-10 | 2019-04-12 | 4.3 | 4.36 | 4.35 | 4.3 | 0.006 | 0.95 | 0.0 | 0.06 | 15.08 | 0.01 | 1.680 | 8.22 | 0.41 | 6.0 | 93.9 | 0.1 | -5.14 | 0.59 | 0.72 | — | 4.3 | 0.003 | 0.69 | 0.0 | 0.04 | 14.31 | 0.00 | 1.883 | 15.39 | 0.05 | 5.8 | 94.1 | 0.1 | -0.81 | 0.70 | 0.59 | 0.74 | — | 53756 | 7104 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 8D8Q | 27254 | 2024-03-10 | 2022-06-08 | 4.2 | 3.68 | 34.06 | 3.7 | 0.012 | 1.23 | 0.0 | 0.05 | 11.02 | 0.01 | 2.139 | 1.66 | 0.53 | 1.5 | 98.3 | 0.2 | 2.20 | 0.67 | 0.74 | — | 3.6 | 0.003 | 0.69 | 0.0 | 0.04 | 12.90 | 0.00 | 2.189 | 12.92 | 0.00 | 4.9 | 95.1 | 0.0 | -0.62 | 1.01 | 0.67 | 0.75 | — | 5202 | 669 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7R42 | 14256 | 2024-03-15 | 2022-02-08 | 2.3 | 2.33 | — | 2.3 | 0.008 | 0.85 | 0.0 | 0.84 | 18.39 | 0.01 | 1.921 | 3.20 | 1.23 | 2.6 | 97.4 | 0.0 | 0.55 | 0.71 | 0.90 | 5.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 69480 | 8204 | 114 | 0 | 58 | 1545 | 0 | logfile |
✘ | 8AM5 | 15522 | 2024-03-22 | 2022-08-02 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32746 | 3194 | 29 | 0 | 146 | 0 | 0 | logfile |