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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6HiQ | 0227 | 2023-11-16 | 2018-08-30 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16110 | 1925 | 20 | 0 | 30 | 0 | 0 | logfile |
✘ | 7KSQ | 23023 | 2023-11-22 | 2020-11-23 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36553 | 3347 | 42 | 0 | 219 | 45 | 0 | logfile |
✘ | 6N2Y | 9333 | 2023-11-21 | 2018-11-14 | 3.0 | 3.23 | 2.99 | 3.2 | 0.009 | 1.19 | 14.0 | 0.07 | 10.48 | 0.01 | 0.765 | 8.98 | 0.40 | 3.4 | 96.5 | 0.1 | -2.50 | 0.62 | 0.74 | 4.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35043 | 4696 | 27 | 0 | 26 | 0 | 0 | logfile |
✘ | 6UXA | 20931 | 2023-11-15 | 2019-11-07 | 4.5 | 5.05 | — | 6.0 | 0.005 | 0.77 | 0.0 | 0.06 | 4.56 | 0.00 | 2.628 | 0.00 | 0.00 | 3.8 | 96.2 | 0.0 | -2.56 | 0.71 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10344 | 2104 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 6YLF | 10837 | 2023-11-17 | 2020-04-07 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 6oMB | 20124 | 2023-11-18 | 2019-04-18 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21815 | 2775 | 11 | 0 | 48 | 0 | 0 | logfile |
✘ | 6Z16 | 11027 | 2023-11-20 | 2020-05-12 | 2.98 | 2.98 | — | 3.1 | 0.008 | 1.13 | 0.0 | 0.06 | 12.51 | 0.01 | 2.238 | 3.49 | 0.10 | 4.5 | 95.5 | 0.0 | -2.64 | 0.73 | 0.83 | 3.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30250 | 3744 | 24 | 0 | 30 | 0 | 0 | logfile |
✘ | 8A5E | 15166 | 2023-11-16 | 2022-06-14 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13611 | 1769 | 8 | 0 | 19 | 0 | 0 | logfile |
✘ | 7YPA | 33997 | 2023-11-19 | 2022-08-03 | 3.05 | 3.16 | 3.05 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 14.85 | 0.01 | 2.191 | 3.02 | 0.08 | 3.1 | 96.9 | 0.0 | -3.59 | 0.76 | 0.81 | 2.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26022 | 3129 | 10 | 86 | 3 | 0 | 0 | logfile |
✘ | 6G1K | 4339 | 2023-11-18 | 2018-03-21 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21428 | 2592 | 8 | 0 | 8 | 0 | 0 | logfile |
✘ | 7X28 | 32961 | 2023-11-22 | 2022-02-25 | 2.49 | 2.72 | — | 1.8 | 0.013 | 1.52 | 5.0 | 0.11 | 13.24 | 0.00 | 1.606 | 7.72 | 7.98 | 2.7 | 97.0 | 0.2 | 2.21 | 0.57 | 0.40 | 0.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31583 | 4119 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 7D44 | 30569 | 2023-11-19 | 2020-09-22 | 4.0 | 4.14 | — | 4.0 | 0.006 | 0.86 | 0.0 | 0.05 | 14.78 | 0.00 | 2.049 | 20.50 | 0.28 | 16.3 | 83.6 | 0.1 | -5.25 | 0.80 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28391 | 3825 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7DK4 | 30702 | 2023-11-21 | 2020-11-23 | 3.8 | 3.20 | — | 3.4 | 0.003 | 0.55 | 0.0 | 0.04 | 7.92 | 0.00 | 2.106 | 1.33 | 0.15 | 2.8 | 97.2 | 0.0 | -3.26 | 0.58 | 0.47 | 1.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34707 | 4470 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 3JC6 | 6534 | 2023-11-18 | 2015-11-24 | 3.7 | 4.01 | — | 3.9 | 0.009 | 1.54 | 0.0 | 0.06 | 12.91 | 0.01 | 1.203 | 39.73 | 0.87 | 9.8 | 89.0 | 1.1 | -3.87 | 0.79 | 0.76 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23732 | 2953 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 7VPD | 32063 | 2023-11-20 | 2021-10-15 | 3.77 | 4.04 | 3.88 | 3.9 | 0.005 | 0.79 | 0.0 | 0.05 | 20.10 | 0.01 | 1.979 | 6.99 | 0.44 | 3.6 | 96.4 | 0.0 | -0.05 | 0.82 | 0.73 | 1.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30924 | 3531 | 14 | 168 | 9 | 0 | 0 | logfile |
✘ | 7YYo | 14385 | 2023-11-21 | 2022-02-18 | 2.87 | 3.03 | — | 3.0 | 0.026 | 1.42 | 0.0 | 0.05 | 20.68 | 0.01 | 2.025 | 12.73 | 12.83 | 5.7 | 94.3 | 0.0 | -4.07 | 0.82 | 0.82 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35136 | 4424 | 24 | 0 | 16 | 0 | 0 | logfile |
✘ | 7DEG | 30657 | 2023-11-15 | 2020-11-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12852 | 1520 | 12 | 0 | 18 | 0 | 0 | logfile |
✘ | 7L6o | 23124 | 2023-11-20 | 2020-12-23 | 3.9 | 4.18 | 3.92 | 3.9 | 0.016 | 2.00 | 2.0 | 0.12 | 14.17 | 0.02 | 2.534 | 0.23 | 0.70 | 8.2 | 91.1 | 0.7 | -1.91 | 0.83 | 0.80 | 3.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29270 | 1776 | 51 | 0 | 132 | 0 | 13598 | logfile |
✘ | 6PTJ | 20471 | 2023-11-21 | 2019-07-15 | 3.8 | 4.13 | — | 4.0 | 0.008 | 1.12 | 1.0 | 0.06 | 14.87 | 0.01 | 2.011 | 6.46 | 0.39 | 10.6 | 89.2 | 0.2 | -5.32 | 0.86 | 0.82 | 1.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34361 | 4280 | 14 | 0 | 0 | 0 | 0 | logfile |
✘ | 6Z5R | 11080 | 2023-11-19 | 2020-05-27 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25048 | 2336 | 72 | 0 | 105 | 3 | 0 | logfile |