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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 2XEA | 1730 | 2022-04-05 | 2010-05-12 | 4.6 | 4.10 | — | 4.2 | 0.012 | 2.12 | 0.0 | 0.12 | 20.46 | 0.02 | 1.226 | 161.74 | 3.68 | 8.6 | 90.1 | 1.3 | -3.51 | 0.39 | 0.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62671 | 7546 | 98 | 147 | 0 | 0 | 0 | logfile |
✘ | 5i68 | 8072 | 2022-04-09 | 2016-02-16 | 3.37 | 3.45 | — | 3.5 | 0.009 | 1.47 | 0.0 | 0.08 | 10.36 | 0.01 | 1.419 | 25.74 | 1.25 | 5.2 | 94.8 | 0.0 | -0.41 | 0.73 | 0.80 | 3.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 42016 | 5296 | 8 | 0 | 16 | 0 | 0 | logfile |
✘ | 6Mi8 | 9126 | 2022-04-04 | 2018-09-19 | 4.3 | 4.20 | — | 4.2 | 0.007 | 1.17 | 0.0 | 0.07 | 11.58 | 0.01 | 1.262 | 6.40 | 0.13 | 8.8 | 91.2 | 0.0 | -5.13 | 0.56 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7139 | 911 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 5NUG | 3698 | 2022-04-09 | 2017-04-30 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 46232 | 5840 | 4 | 0 | 10 | 0 | 0 | logfile |
✘ | 5ZCS | 6913 | 2022-04-09 | 2018-02-20 | 4.9 | 5.50 | — | 6.9 | 0.003 | 0.77 | 0.0 | 0.05 | 9.66 | 0.01 | 2.281 | 3.31 | 0.05 | 5.6 | 94.3 | 0.1 | -5.28 | 0.85 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 49176 | 6644 | 8 | 0 | 278 | 0 | 0 | logfile |
✘ | 6JEo | 9807 | 2022-04-08 | 2019-02-06 | 3.3 | 3.44 | — | 3.4 | 0.009 | 1.07 | 0.0 | 0.06 | 18.06 | 0.02 | 1.212 | 7.49 | 0.24 | 4.8 | 95.2 | 0.0 | -5.26 | 0.73 | 0.81 | 4.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94576 | 8774 | 88 | 0 | 504 | 0 | 0 | logfile |
✘ | 6Ri5 | 4884 | 2022-04-07 | 2019-04-23 | 3.3 | 3.42 | — | 3.3 | 0.016 | 1.15 | 6.0 | 0.07 | 16.12 | 0.01 | 1.267 | 4.37 | 1.01 | 9.6 | 90.2 | 0.2 | -4.60 | 0.82 | 0.81 | 2.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 130139 | 7034 | 54 | 3424 | 217 | 0 | 0 | logfile |
✘ | 6RHZ | 4883 | 2022-04-08 | 2019-04-23 | 3.2 | 3.48 | 3.18 | 3.4 | 0.008 | 1.05 | 0.0 | 0.10 | 19.78 | 0.02 | 1.172 | 4.63 | 0.00 | 3.7 | 96.2 | 0.1 | -3.89 | 0.70 | 0.76 | 1.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53055 | 2783 | 20 | 0 | 193 | 0 | 21167 | logfile |
✘ | 5MDV | 3489 | 2022-04-13 | 2016-11-13 | 2.97 | 3.05 | 2.97 | 3.0 | 0.008 | 1.26 | 22.0 | 0.10 | 16.60 | 0.02 | 1.257 | 3.21 | 7.74 | 4.9 | 94.7 | 0.4 | -1.77 | 0.79 | 0.88 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 149892 | 6382 | 67 | 4638 | 442 | 2 | 0 | logfile |
✘ | 6PP5 | 20419 | 2022-04-08 | 2019-07-05 | 3.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32118 | 2063 | 13 | 0 | 18 | 0 | 16112 | logfile |
✘ | 6G2H | 4343 | 2022-04-09 | 2018-03-23 | 4.6 | 4.69 | — | 4.5 | 0.013 | 1.94 | 46.0 | 0.11 | 13.54 | 0.01 | 1.921 | 14.03 | 2.29 | 8.3 | 91.0 | 0.7 | -3.04 | 0.79 | 0.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 103896 | 6454 | 6 | 0 | 0 | 0 | 51852 | logfile |
✘ | 6R93 | 4767 | 2022-04-06 | 2019-04-02 | 4.0 | 4.29 | — | 4.1 | 0.010 | 1.48 | 2.0 | 0.10 | 28.49 | 0.01 | 1.600 | 2.04 | 0.00 | 2.5 | 97.0 | 0.5 | 0.30 | 0.78 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22961 | 775 | 10 | 290 | 0 | 0 | 10123 | logfile |
✘ | 6PP7 | 20421 | 2022-04-08 | 2019-07-05 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32499 | 2081 | 13 | 0 | 25 | 0 | 16296 | logfile |
✘ | 6J5T | 0680 | 2022-04-04 | 2019-01-12 | 3.4 | 3.94 | — | 3.0 | 0.009 | 1.20 | 0.0 | 0.07 | 11.49 | 0.01 | 1.182 | 7.02 | 0.59 | 11.3 | 88.4 | 0.3 | -4.25 | 0.83 | 0.67 | 0.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53488 | 6640 | 25 | 0 | 15 | 0 | 0 | logfile |
✘ | 6FBS | 4225 | 2022-04-05 | 2017-12-19 | 3.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13421 | 1665 | 5 | 8 | 3 | 0 | 0 | logfile |
✘ | 6SGA | 10177 | 2022-04-09 | 2019-08-03 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 137038 | 15423 | 77 | 463 | 790 | 0 | 0 | logfile |
✘ | 6MU2 | 9244 | 2022-04-09 | 2018-10-22 | 3.9 | 4.63 | — | 4.5 | 0.012 | 2.05 | 157.0 | 0.17 | 15.10 | 0.01 | 1.078 | 53.92 | 14.66 | 11.0 | 87.3 | 1.7 | -1.58 | 0.70 | 0.68 | 0.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 51404 | 8680 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PoD | 20412 | 2022-04-04 | 2019-07-03 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53637 | 3427 | 20 | 0 | 25 | 0 | 26898 | logfile |
✘ | 6oo3 | 20143 | 2022-04-06 | 2019-04-22 | 2.9 | 3.02 | 2.79 | 3.0 | 0.014 | 1.22 | 0.0 | 0.06 | 9.99 | 0.01 | 2.495 | 2.15 | 0.00 | 3.1 | 96.9 | 0.0 | -2.84 | 0.68 | 0.85 | 4.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18236 | 2404 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6oo5 | 20146 | 2022-04-06 | 2019-04-22 | 4.2 | 4.30 | 4.10 | 4.2 | 0.012 | 1.05 | 0.0 | 0.06 | 9.23 | 0.01 | 2.246 | 3.18 | 0.00 | 4.5 | 95.5 | 0.0 | -2.74 | 0.65 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17548 | 2440 | 8 | 0 | 4 | 0 | 0 | logfile |