Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6NM9	9398	2022-07-05	2019-01-10	3.38	3.86	—	3.8	0.008	0.77	3.0	0.05	15.44	0.00	1.884	18.75	0.29	12.6	87.3	0.1	-4.62	0.72	0.76	1.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22916	2640	10	50	4	0	0	logfile
✘	5MKF	3524	2022-07-04	2016-12-04	4.2	4.33	—	4.3	0.009	1.06	8.0	0.07	11.88	0.01	1.185	33.58	0.52	11.7	87.5	0.8	-5.40	0.68	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16620	1932	8	0	41	0	0	logfile
✘	5MKE	3523	2022-07-04	2016-12-04	4.3	4.44	—	4.3	0.009	1.18	8.0	0.07	12.88	0.01	1.185	56.89	0.82	18.5	81.1	0.5	-5.74	0.63	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16426	1908	8	0	34	0	0	logfile
✘	6P2R	20240	2022-07-03	2019-05-21	3.2	3.36	—	3.3	0.008	1.13	0.0	0.06	11.93	0.01	1.329	8.37	0.57	6.8	93.2	0.0	-4.56	0.63	0.79	3.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11712	1421	4	0	6	0	0	logfile
✘	6iRS	9721	2022-07-03	2018-11-14	3.3	3.44	—	3.4	0.011	1.35	0.0	0.07	12.97	0.01	2.150	13.18	3.66	8.8	90.3	0.9	-5.69	0.62	0.77	2.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7337	926	4	0	10	0	0	logfile
✘	6QCT	4512	2022-07-04	2018-12-30	3.2	3.59	—	3.2	0.006	0.73	0.0	0.05	14.82	0.01	1.226	4.30	5.87	5.0	95.0	0.0	-3.92	0.90	0.84	3.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18266	2186	8	38	3	0	0	logfile
✘	6NMA	0445	2022-07-03	2019-01-10	3.38	3.71	—	3.7	0.009	0.78	0.0	0.05	15.30	0.00	1.973	10.78	8.09	11.0	89.0	0.1	-4.94	0.65	0.78	2.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12404	1435	6	25	2	0	0	logfile
✘	6TF9	10491	2022-07-04	2019-11-13	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✘	6P25	20236	2022-07-03	2019-05-21	3.2	3.30	—	3.3	0.006	1.11	0.0	0.06	12.00	0.01	1.329	8.91	0.40	6.7	93.3	0.0	-4.48	0.59	0.77	3.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11739	1424	5	0	6	0	0	logfile
✘	5NiK	3652	2022-07-06	2017-03-24	3.3	3.47	—	3.4	0.010	1.29	0.0	0.04	10.30	0.01	0.941	22.03	0.24	6.4	91.6	1.9	-1.88	0.64	0.59	1.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35215	4582	11	0	0	0	0	logfile
✘	6SJ7	10213	2022-07-03	2019-08-12	3.54	3.73	—	3.5	0.010	1.03	1.0	0.06	16.33	0.01	1.307	9.39	0.81	11.3	88.7	0.1	-3.72	0.83	0.80	1.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10007	1260	5	0	1	0	0	logfile
✘	6i53	4411	2022-07-04	2018-11-12	3.2	3.37	3.20	3.3	0.006	0.83	0.0	0.05	8.92	0.01	1.201	4.12	0.00	3.7	96.3	0.0	-4.72	0.52	0.70	4.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15362	1821	11	0	34	0	0	logfile
✘	6RAK	4778	2022-07-03	2019-04-06	3.3	3.53	3.33	3.4	0.006	1.06	2.0	0.06	13.99	0.01	1.299	5.29	0.00	3.2	96.8	0.0	-5.73	0.83	0.85	2.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10180	1280	5	0	4	0	0	logfile
✘	6oMB	20124	2022-07-05	2019-04-18	3.7	3.91	—	3.8	0.005	0.94	0.0	0.05	15.66	0.01	1.515	4.75	0.18	7.3	92.7	0.0	-4.26	0.75	0.81	0.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21815	2775	11	0	48	0	0	logfile
✘	6HUK	0280	2022-07-04	2018-10-08	3.69	3.75	3.64	3.7	0.005	0.99	0.0	0.06	9.26	0.01	1.201	5.10	0.00	4.0	96.0	0.0	-3.20	0.71	0.82	3.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15300	1815	11	0	34	0	0	logfile
✘	6HUJ	0279	2022-07-04	2018-10-08	3.04	3.16	3.04	3.1	0.005	0.80	0.0	0.06	8.43	0.01	1.197	4.71	0.00	4.0	96.0	0.0	-4.37	0.76	0.83	4.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15255	1812	11	0	35	0	0	logfile
✘	3J8A	6124	2022-07-04	2014-10-08	3.7	3.90	—	3.8	0.006	1.28	0.0	0.05	14.94	0.01	2.145	19.64	6.28	11.2	87.4	1.4	-5.31	0.73	0.80	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15800	1835	12	0	280	0	0	logfile
✘	6RoJ	4974	2022-07-03	2019-05-13	2.9	3.32	2.99	3.1	0.006	0.90	0.0	0.05	14.09	0.01	1.183	3.66	0.16	3.4	96.6	0.0	-4.91	0.83	0.84	3.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11465	1404	5	0	12	2	0	logfile
✘	6K7L	9939	2022-07-03	2019-06-07	2.83	2.93	2.81	2.9	0.012	1.15	0.0	0.07	15.48	0.01	1.976	4.83	0.17	7.5	92.3	0.2	-3.27	0.58	0.83	3.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10615	1317	4	0	8	0	0	logfile
✘	6RBE	4794	2022-07-04	2019-04-10	3.8	4.03	3.73	40.0	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.23	1.35	11.9	86.8	1.2	-4.17	0.25	0.02	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile

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