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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6NM9 | 9398 | 2022-07-05 | 2019-01-10 | 3.38 | 3.86 | — | 3.8 | 0.008 | 0.77 | 3.0 | 0.05 | 15.44 | 0.00 | 1.884 | 18.75 | 0.29 | 12.6 | 87.3 | 0.1 | -4.62 | 0.72 | 0.76 | 1.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22916 | 2640 | 10 | 50 | 4 | 0 | 0 | logfile |
✘ | 5MKF | 3524 | 2022-07-04 | 2016-12-04 | 4.2 | 4.33 | — | 4.3 | 0.009 | 1.06 | 8.0 | 0.07 | 11.88 | 0.01 | 1.185 | 33.58 | 0.52 | 11.7 | 87.5 | 0.8 | -5.40 | 0.68 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16620 | 1932 | 8 | 0 | 41 | 0 | 0 | logfile |
✘ | 5MKE | 3523 | 2022-07-04 | 2016-12-04 | 4.3 | 4.44 | — | 4.3 | 0.009 | 1.18 | 8.0 | 0.07 | 12.88 | 0.01 | 1.185 | 56.89 | 0.82 | 18.5 | 81.1 | 0.5 | -5.74 | 0.63 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16426 | 1908 | 8 | 0 | 34 | 0 | 0 | logfile |
✘ | 6P2R | 20240 | 2022-07-03 | 2019-05-21 | 3.2 | 3.36 | — | 3.3 | 0.008 | 1.13 | 0.0 | 0.06 | 11.93 | 0.01 | 1.329 | 8.37 | 0.57 | 6.8 | 93.2 | 0.0 | -4.56 | 0.63 | 0.79 | 3.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11712 | 1421 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 6iRS | 9721 | 2022-07-03 | 2018-11-14 | 3.3 | 3.44 | — | 3.4 | 0.011 | 1.35 | 0.0 | 0.07 | 12.97 | 0.01 | 2.150 | 13.18 | 3.66 | 8.8 | 90.3 | 0.9 | -5.69 | 0.62 | 0.77 | 2.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7337 | 926 | 4 | 0 | 10 | 0 | 0 | logfile |
✘ | 6QCT | 4512 | 2022-07-04 | 2018-12-30 | 3.2 | 3.59 | — | 3.2 | 0.006 | 0.73 | 0.0 | 0.05 | 14.82 | 0.01 | 1.226 | 4.30 | 5.87 | 5.0 | 95.0 | 0.0 | -3.92 | 0.90 | 0.84 | 3.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18266 | 2186 | 8 | 38 | 3 | 0 | 0 | logfile |
✘ | 6NMA | 0445 | 2022-07-03 | 2019-01-10 | 3.38 | 3.71 | — | 3.7 | 0.009 | 0.78 | 0.0 | 0.05 | 15.30 | 0.00 | 1.973 | 10.78 | 8.09 | 11.0 | 89.0 | 0.1 | -4.94 | 0.65 | 0.78 | 2.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12404 | 1435 | 6 | 25 | 2 | 0 | 0 | logfile |
✘ | 6TF9 | 10491 | 2022-07-04 | 2019-11-13 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 6P25 | 20236 | 2022-07-03 | 2019-05-21 | 3.2 | 3.30 | — | 3.3 | 0.006 | 1.11 | 0.0 | 0.06 | 12.00 | 0.01 | 1.329 | 8.91 | 0.40 | 6.7 | 93.3 | 0.0 | -4.48 | 0.59 | 0.77 | 3.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11739 | 1424 | 5 | 0 | 6 | 0 | 0 | logfile |
✘ | 5NiK | 3652 | 2022-07-06 | 2017-03-24 | 3.3 | 3.47 | — | 3.4 | 0.010 | 1.29 | 0.0 | 0.04 | 10.30 | 0.01 | 0.941 | 22.03 | 0.24 | 6.4 | 91.6 | 1.9 | -1.88 | 0.64 | 0.59 | 1.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35215 | 4582 | 11 | 0 | 0 | 0 | 0 | logfile |
✘ | 6SJ7 | 10213 | 2022-07-03 | 2019-08-12 | 3.54 | 3.73 | — | 3.5 | 0.010 | 1.03 | 1.0 | 0.06 | 16.33 | 0.01 | 1.307 | 9.39 | 0.81 | 11.3 | 88.7 | 0.1 | -3.72 | 0.83 | 0.80 | 1.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10007 | 1260 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 6i53 | 4411 | 2022-07-04 | 2018-11-12 | 3.2 | 3.37 | 3.20 | 3.3 | 0.006 | 0.83 | 0.0 | 0.05 | 8.92 | 0.01 | 1.201 | 4.12 | 0.00 | 3.7 | 96.3 | 0.0 | -4.72 | 0.52 | 0.70 | 4.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15362 | 1821 | 11 | 0 | 34 | 0 | 0 | logfile |
✘ | 6RAK | 4778 | 2022-07-03 | 2019-04-06 | 3.3 | 3.53 | 3.33 | 3.4 | 0.006 | 1.06 | 2.0 | 0.06 | 13.99 | 0.01 | 1.299 | 5.29 | 0.00 | 3.2 | 96.8 | 0.0 | -5.73 | 0.83 | 0.85 | 2.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10180 | 1280 | 5 | 0 | 4 | 0 | 0 | logfile |
✘ | 6oMB | 20124 | 2022-07-05 | 2019-04-18 | 3.7 | 3.91 | — | 3.8 | 0.005 | 0.94 | 0.0 | 0.05 | 15.66 | 0.01 | 1.515 | 4.75 | 0.18 | 7.3 | 92.7 | 0.0 | -4.26 | 0.75 | 0.81 | 0.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21815 | 2775 | 11 | 0 | 48 | 0 | 0 | logfile |
✘ | 6HUK | 0280 | 2022-07-04 | 2018-10-08 | 3.69 | 3.75 | 3.64 | 3.7 | 0.005 | 0.99 | 0.0 | 0.06 | 9.26 | 0.01 | 1.201 | 5.10 | 0.00 | 4.0 | 96.0 | 0.0 | -3.20 | 0.71 | 0.82 | 3.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15300 | 1815 | 11 | 0 | 34 | 0 | 0 | logfile |
✘ | 6HUJ | 0279 | 2022-07-04 | 2018-10-08 | 3.04 | 3.16 | 3.04 | 3.1 | 0.005 | 0.80 | 0.0 | 0.06 | 8.43 | 0.01 | 1.197 | 4.71 | 0.00 | 4.0 | 96.0 | 0.0 | -4.37 | 0.76 | 0.83 | 4.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15255 | 1812 | 11 | 0 | 35 | 0 | 0 | logfile |
✘ | 3J8A | 6124 | 2022-07-04 | 2014-10-08 | 3.7 | 3.90 | — | 3.8 | 0.006 | 1.28 | 0.0 | 0.05 | 14.94 | 0.01 | 2.145 | 19.64 | 6.28 | 11.2 | 87.4 | 1.4 | -5.31 | 0.73 | 0.80 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15800 | 1835 | 12 | 0 | 280 | 0 | 0 | logfile |
✘ | 6RoJ | 4974 | 2022-07-03 | 2019-05-13 | 2.9 | 3.32 | 2.99 | 3.1 | 0.006 | 0.90 | 0.0 | 0.05 | 14.09 | 0.01 | 1.183 | 3.66 | 0.16 | 3.4 | 96.6 | 0.0 | -4.91 | 0.83 | 0.84 | 3.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11465 | 1404 | 5 | 0 | 12 | 2 | 0 | logfile |
✘ | 6K7L | 9939 | 2022-07-03 | 2019-06-07 | 2.83 | 2.93 | 2.81 | 2.9 | 0.012 | 1.15 | 0.0 | 0.07 | 15.48 | 0.01 | 1.976 | 4.83 | 0.17 | 7.5 | 92.3 | 0.2 | -3.27 | 0.58 | 0.83 | 3.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10615 | 1317 | 4 | 0 | 8 | 0 | 0 | logfile |
✘ | 6RBE | 4794 | 2022-07-04 | 2019-04-10 | 3.8 | 4.03 | 3.73 | 40.0 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.23 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.25 | 0.02 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |