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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5GM6 | 9524 | 2024-03-11 | 2016-07-12 | 3.5 | 3.61 | — | 3.6 | 0.012 | 1.33 | 11.0 | 0.08 | 15.15 | 0.01 | 1.303 | 18.95 | 3.36 | 6.6 | 92.1 | 1.2 | -3.54 | 0.58 | 0.83 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112064 | 12796 | 55 | 361 | 881 | 0 | 0 | logfile |
✘ | 6J6Q | 0692 | 2024-03-17 | 2019-01-15 | 3.7 | 3.85 | — | 3.7 | 0.008 | 0.99 | 0.0 | 0.09 | 17.42 | 0.01 | 1.463 | 18.21 | 2.93 | 4.9 | 94.2 | 0.9 | -3.65 | 0.62 | 0.66 | 1.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 80535 | 9167 | 50 | 549 | 15 | 0 | 0 | logfile |
✘ | 6KAD | 9956 | 2024-03-21 | 2019-06-21 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105342 | 9734 | 94 | 0 | 560 | 0 | 0 | logfile |
✘ | 6JV2 | 9889 | 2024-03-11 | 2019-04-15 | 4.4 | 5.59 | — | 4.4 | 0.011 | 1.30 | 1.0 | 0.06 | 16.74 | 0.01 | 2.116 | 19.38 | 1.92 | 13.3 | 86.5 | 0.3 | -4.61 | 0.83 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111080 | 14564 | 16 | 0 | 24 | 0 | 0 | logfile |
✘ | 6Ji8 | 9833 | 2024-03-12 | 2019-02-20 | 3.6 | 3.80 | — | 3.7 | 0.010 | 1.26 | 8.0 | 0.06 | 11.98 | 0.01 | 2.196 | 8.60 | 1.03 | 10.5 | 89.0 | 0.5 | -4.77 | 0.73 | 0.77 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115060 | 15024 | 16 | 0 | 4 | 0 | 0 | logfile |
✘ | 7Z15 | 14441 | 2024-03-25 | 2022-02-24 | 1.93 | 2.40 | 1.98 | 2.3 | 0.012 | 1.01 | 9.0 | 0.06 | 15.88 | 0.01 | 1.723 | 3.87 | 0.83 | 1.6 | 98.4 | 0.0 | 1.32 | 0.83 | 0.86 | 6.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 46112 | 2888 | 32 | 0 | 16 | 1171 | 22357 | logfile |
✘ | 6JiU | 9836 | 2024-03-11 | 2019-02-23 | 4.2 | 4.52 | — | 4.2 | 0.006 | 1.01 | 9.0 | 0.05 | 15.69 | 0.01 | 2.218 | 10.69 | 0.51 | 10.3 | 89.5 | 0.2 | -5.44 | 0.78 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112212 | 14684 | 20 | 0 | 24 | 0 | 0 | logfile |
✘ | 6JHN | 9826 | 2024-03-11 | 2019-02-18 | 4.5 | 7.49 | — | 4.4 | 0.010 | 1.23 | 0.0 | 0.06 | 16.52 | 0.01 | 2.114 | 19.26 | 1.44 | 13.9 | 85.8 | 0.3 | -4.27 | 0.85 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109488 | 14332 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 7WFE | 32463 | 2024-03-23 | 2021-12-26 | 3.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35123 | 3216 | 30 | 0 | 205 | 0 | 0 | logfile |
✘ | 7WYi | 32892 | 2024-03-19 | 2022-02-16 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25007 | 3631 | 28 | 0 | 171 | 0 | 0 | logfile |
✘ | 6L35 | 0821 | 2024-03-22 | 2019-10-09 | 3.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34822 | 3260 | 30 | 0 | 205 | 0 | 0 | logfile |
✘ | 7o1C | 12695 | 2024-03-24 | 2021-03-29 | 2.6 | 3.02 | 2.70 | 2.4 | 0.018 | 1.90 | 0.0 | 0.06 | 22.52 | 0.02 | 0.055 | 6.76 | 0.04 | 5.1 | 94.8 | 0.1 | -1.96 | 0.80 | 0.83 | 3.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 148175 | 6042 | 76 | 4638 | 489 | 800 | 0 | logfile |
✘ | 8DDU | 27342 | 2024-03-22 | 2022-06-19 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32230 | 3872 | 12 | 0 | 82 | 0 | 0 | logfile |
✘ | 7S6K | 24878 | 2024-03-21 | 2021-09-14 | 3.4 | 3.64 | 3.40 | 3.6 | 0.020 | 1.79 | 0.0 | 0.11 | 9.77 | 0.01 | 2.392 | 0.89 | 0.00 | 3.4 | 96.6 | 0.0 | 0.43 | 0.80 | 0.82 | 3.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30903 | 3885 | 24 | 0 | 45 | 0 | 0 | logfile |
✘ | 7JN3 | 22400 | 2024-03-16 | 2020-08-03 | 3.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15666 | 1807 | 14 | 68 | 8 | 0 | 0 | logfile |
✘ | 6J6H | 0687 | 2024-03-17 | 2019-01-15 | 3.6 | 3.74 | — | 3.6 | 0.008 | 0.97 | 2.0 | 0.09 | 17.34 | 0.01 | 1.805 | 16.37 | 2.68 | 4.4 | 95.1 | 0.5 | -3.20 | 0.62 | 0.67 | 1.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 76847 | 8644 | 47 | 551 | 14 | 0 | 0 | logfile |
✘ | 7S6J | 24877 | 2024-03-21 | 2021-09-14 | 3.4 | 3.70 | 3.47 | 3.6 | 0.020 | 1.80 | 0.0 | 0.11 | 9.98 | 0.01 | 2.401 | 0.72 | 0.18 | 4.0 | 96.0 | 0.0 | 0.16 | 0.80 | 0.82 | 2.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30795 | 3894 | 21 | 0 | 33 | 0 | 0 | logfile |
✘ | 6iD1 | 9647 | 2024-03-17 | 2018-09-07 | 2.86 | 2.99 | — | 3.0 | 0.009 | 1.35 | 22.0 | 0.10 | 16.99 | 0.01 | 1.603 | 16.93 | 3.66 | 6.6 | 92.5 | 0.9 | -2.72 | 0.61 | 0.64 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 79882 | 10720 | 49 | 399 | 16 | 0 | 0 | logfile |
✘ | 8HLA | 34859 | 2024-03-18 | 2022-11-29 | 2.81 | 2.68 | 2.73 | 2.8 | 0.011 | 0.96 | 0.0 | 0.06 | 14.25 | 0.01 | 2.027 | 19.94 | 0.09 | 8.2 | 91.7 | 0.1 | -2.33 | 0.62 | 0.83 | 3.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20868 | 2580 | 20 | 0 | 12 | 0 | 0 | logfile |
✘ | 7WG5 | 32477 | 2024-03-11 | 2021-12-28 | 3.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112687 | 11759 | 92 | 0 | 545 | 0 | 0 | logfile |