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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7KS9 | 23016 | 2024-04-12 | 2020-11-21 | 4.75 | 5.64 | 4.96 | 4.9 | 0.005 | 0.80 | 0.0 | 0.05 | 11.62 | 0.01 | 2.222 | 3.57 | 0.07 | 1.9 | 98.1 | 0.0 | -0.64 | 0.82 | 0.74 | — | 4.8 | 0.003 | 0.62 | 0.0 | 0.04 | 11.64 | 0.00 | 2.098 | 14.10 | 0.00 | 3.7 | 96.3 | 0.0 | 0.05 | 0.73 | 0.84 | 0.80 | — | 25380 | 3189 | 20 | 0 | 59 | 0 | 0 | logfile |
✔ | 8CTJ | 26992 | 2024-04-05 | 2022-05-15 | 4.74 | 4.27 | 4.78 | 5.3 | 0.005 | 0.92 | 0.0 | 0.05 | 14.67 | 0.01 | 2.233 | 6.13 | 0.00 | 4.6 | 95.4 | 0.0 | -0.72 | 0.43 | 0.48 | — | 4.2 | 0.003 | 0.73 | 0.0 | 0.04 | 14.72 | 0.00 | 2.098 | 15.69 | 0.00 | 5.8 | 94.2 | 0.0 | 0.16 | 1.85 | 0.50 | 0.59 | — | 3312 | 401 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7TNM | 26014 | 2024-04-10 | 2022-01-21 | 4.74 | 3.56 | — | 3.5 | 0.007 | 1.08 | 0.0 | 0.06 | 12.01 | 0.01 | 2.214 | 5.88 | 0.86 | 2.6 | 97.0 | 0.5 | -1.48 | 0.68 | 0.68 | — | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 12.69 | 0.00 | 2.107 | 14.47 | 0.00 | 4.6 | 95.4 | 0.0 | 0.22 | 1.80 | 0.69 | 0.69 | — | 19448 | 2486 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 8DAN | 27271 | 2024-04-10 | 2022-06-13 | 4.74 | 5.06 | 4.76 | 5.0 | 0.003 | 0.53 | 0.0 | 0.04 | 13.83 | 0.00 | 1.929 | 10.23 | 0.00 | 4.5 | 95.5 | 0.0 | -0.75 | 0.65 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 68968 | 4472 | 24 | 0 | 12 | 0 | 33968 | logfile |
✘ | 8S90 | 40233 | 2024-04-09 | 2023-03-27 | 4.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15323 | 2096 | 9 | 0 | 1 | 0 | 0 | logfile |
✔ | 6Y92 | 10732 | 2024-04-09 | 2020-03-06 | 4.73 | 5.03 | — | 4.9 | 0.006 | 0.77 | 0.0 | 0.06 | 14.34 | 0.00 | 2.265 | 7.43 | 0.77 | 3.7 | 96.3 | 0.0 | -0.68 | 0.59 | 0.71 | — | 4.9 | 0.003 | 0.70 | 0.0 | 0.04 | 13.27 | 0.00 | 2.188 | 10.59 | 0.00 | 5.9 | 94.1 | 0.0 | -1.35 | 0.65 | 0.61 | 0.77 | — | 9497 | 1210 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 7R0C | 14221 | 2024-04-06 | 2022-02-01 | 4.73 | 5.24 | 5.06 | 5.1 | 0.005 | 0.91 | 1.0 | 0.05 | 13.19 | 0.01 | 2.100 | 26.54 | 0.14 | 6.1 | 93.9 | 0.0 | -0.89 | 0.64 | 0.73 | — | 5.1 | 0.003 | 0.64 | 0.0 | 0.04 | 13.25 | 0.00 | 2.185 | 18.60 | 0.14 | 5.0 | 95.0 | 0.0 | -0.42 | 0.47 | 0.64 | 0.72 | — | 6816 | 875 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6EF1 | 9043 | 2024-04-11 | 2018-08-15 | 4.73 | 3.61 | — | 4.2 | 0.009 | 0.99 | 0.0 | 0.05 | 12.32 | 0.01 | 2.040 | 7.26 | 0.00 | 14.5 | 85.5 | 0.0 | -5.20 | 0.59 | 0.78 | — | 4.2 | 0.003 | 0.75 | 0.0 | 0.04 | 13.10 | 0.00 | 2.117 | 11.98 | 0.05 | 7.8 | 92.2 | 0.0 | -2.14 | 1.69 | 0.60 | 0.80 | — | 23658 | 3294 | 20 | 0 | 6 | 0 | 0 | logfile |
✘ | 8PWL | 17994 | 2024-04-08 | 2023-07-20 | 4.73 | 5.25 | 4.85 | 4.8 | 0.002 | 0.51 | 0.0 | 0.04 | 13.55 | 0.00 | 2.250 | 5.28 | 0.00 | 2.0 | 98.0 | 0.0 | -0.12 | 0.83 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12266 | 1541 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CDV | 16596 | 2024-04-17 | 2023-02-01 | 4.73 | 3.73 | 4.59 | 3.7 | 0.009 | 1.44 | 2.0 | 0.11 | 24.69 | 0.02 | 1.187 | 13.24 | 3.68 | 3.0 | 96.0 | 0.9 | -1.91 | 0.67 | 0.66 | — | 3.6 | 0.002 | 0.61 | 0.0 | 0.04 | 23.46 | 0.00 | 2.081 | 16.47 | 0.11 | 2.4 | 97.4 | 0.2 | 0.34 | 1.23 | 0.66 | 0.61 | — | 43593 | 2094 | 19 | 1258 | 0 | 0 | 0 | logfile |
✔ | 6DiD | 7896 | 2024-04-17 | 2018-05-23 | 4.71 | 5.51 | — | 4.7 | 0.014 | 1.61 | 0.0 | 0.10 | 15.54 | 0.01 | 0.718 | 10.44 | 1.83 | 2.4 | 97.6 | 0.0 | 1.29 | 0.72 | 0.51 | — | 4.7 | 0.004 | 0.69 | 0.0 | 0.04 | 11.02 | 0.00 | 1.792 | 51.13 | 0.53 | 7.2 | 92.8 | 0.0 | 0.29 | 0.97 | 0.81 | 0.67 | — | 34674 | 3009 | 54 | 0 | 147 | 0 | 9465 | logfile |
✔ | 5Y5Y | 6811 | 2024-04-14 | 2017-08-10 | 4.7 | 4.66 | — | 4.6 | 0.027 | 2.87 | 128.0 | 0.17 | 18.51 | 0.03 | 2.246 | 4.73 | 9.44 | 16.3 | 75.1 | 8.6 | -5.44 | 0.70 | 0.77 | — | 4.6 | 0.006 | 0.98 | 0.0 | 0.05 | 15.00 | 0.01 | 2.079 | 18.28 | 0.00 | 10.5 | 89.0 | 0.5 | -1.76 | 1.74 | 0.69 | 0.82 | — | 32159 | 4164 | 15 | 0 | 2 | 0 | 0 | logfile |
✔ | 7WZR | 32912 | 2024-04-12 | 2022-02-19 | 4.7 | 4.70 | — | 4.4 | 0.008 | 1.21 | 3.0 | 0.06 | 7.95 | 0.01 | 2.197 | 7.80 | 0.00 | 21.6 | 77.2 | 1.2 | -4.58 | 0.76 | 0.65 | — | 4.4 | 0.002 | 0.67 | 0.0 | 0.04 | 4.72 | 0.00 | 2.151 | 1.89 | 0.00 | 11.3 | 88.4 | 0.3 | -0.14 | 1.59 | 0.76 | 0.69 | — | 27037 | 5440 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2024-04-07 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X34 | 22017 | 2024-04-15 | 2020-05-21 | 4.7 | 6.14 | 4.99 | 4.8 | 0.001 | 0.41 | 0.0 | 0.03 | 9.38 | 0.00 | 2.258 | 3.80 | 0.61 | 1.6 | 98.4 | 0.0 | -2.99 | 0.74 | 0.66 | — | 4.8 | 0.004 | 0.68 | 0.0 | 0.04 | 9.64 | 0.00 | 2.092 | 16.08 | 0.00 | 5.3 | 94.7 | 0.0 | 0.02 | 0.92 | 0.80 | 0.80 | — | 97888 | 13956 | 12 | 0 | 1320 | 0 | 0 | logfile |
✔ | 4V1W | 2788 | 2024-04-14 | 2014-10-02 | 4.7 | 4.69 | — | 4.7 | 0.020 | 2.45 | 172.0 | 0.17 | 18.97 | 0.01 | 2.533 | 7.94 | 7.67 | 3.0 | 96.5 | 0.6 | -2.40 | 0.74 | 0.84 | — | 4.6 | 0.003 | 0.80 | 0.0 | 0.04 | 17.57 | 0.00 | 2.213 | 17.43 | 0.69 | 3.0 | 97.0 | 0.0 | 1.92 | 2.68 | 0.75 | 0.79 | — | 32736 | 4080 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SLU | 10240 | 2024-04-07 | 2019-08-20 | 4.7 | 4.88 | 4.61 | 4.8 | 0.004 | 0.64 | 0.0 | 0.04 | 9.23 | 0.00 | 1.454 | 9.87 | 0.18 | 1.3 | 98.7 | 0.0 | -1.03 | 0.69 | 0.77 | — | 4.7 | 0.003 | 0.77 | 0.0 | 0.05 | 12.87 | 0.00 | 2.138 | 16.75 | 0.00 | 2.8 | 97.2 | 0.0 | 0.41 | 1.72 | 0.73 | 0.81 | — | 10336 | 1320 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Y5C | 33616 | 2024-04-15 | 2022-06-16 | 4.7 | 4.41 | 4.64 | 4.1 | 0.003 | 0.60 | 0.0 | 0.04 | 14.53 | 0.00 | 1.916 | 9.62 | 0.00 | 2.6 | 97.4 | 0.0 | 1.08 | 0.77 | 0.73 | — | 4.1 | 0.003 | 0.61 | 0.0 | 0.04 | 14.04 | 0.00 | 1.859 | 10.77 | 0.00 | 3.1 | 96.9 | 0.0 | 1.04 | 1.19 | 0.77 | 0.75 | — | 35993 | 4851 | 26 | 0 | 11 | 0 | 0 | logfile |
✔ | 7oHT | 12908 | 2024-04-11 | 2021-05-11 | 4.7 | 6.83 | 4.99 | 3.5 | 0.002 | 0.48 | 0.0 | 0.04 | 22.77 | 0.00 | 1.855 | 6.77 | 1.28 | 5.3 | 94.6 | 0.1 | 0.83 | 0.81 | 0.61 | — | 3.4 | 0.003 | 0.57 | 0.0 | 0.03 | 22.76 | 0.00 | 1.820 | 18.58 | 0.00 | 8.5 | 91.3 | 0.1 | -0.69 | 1.74 | 0.86 | 0.78 | — | 135365 | 5154 | 30 | 1618 | 3 | 0 | 59714 | logfile |
✘ | 7W6M | 32329 | 2024-04-14 | 2021-12-02 | 4.7 | 4.96 | 4.72 | 4.7 | 0.005 | 0.83 | 0.0 | 0.06 | 25.50 | 0.00 | 2.107 | 9.16 | 0.00 | 4.4 | 95.6 | 0.0 | -0.63 | 0.85 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30756 | 3672 | 51 | 0 | 204 | 0 | 0 | logfile |