Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VHQ	32003	2023-02-22	2021-09-22	3.27	3.68	—	3.5	0.003	0.60	0.0	0.04	13.43	0.00	2.165	9.53	0.00	3.1	96.9	0.0	1.82	0.73	0.82	1.67	3.4	0.004	0.63	0.0	0.04	15.43	0.00	2.148	10.42	0.61	4.1	95.9	0.0	1.79	0.42	0.74	0.85	1.46	16650	2076	12	0	0	0	0	logfile
✔	6oAA	0666	2023-02-23	2019-03-15	4.1	4.22	4.19	4.2	0.006	1.06	1.0	0.05	16.65	0.01	1.317	13.46	0.34	8.3	91.5	0.3	-5.52	0.63	0.70	—	4.2	0.003	0.83	0.0	0.05	15.51	0.00	1.082	14.28	0.00	9.7	90.2	0.1	-2.15	0.88	0.66	0.75	—	19546	2494	10	0	14	0	0	logfile
✔	7D10	30542	2023-02-17	2020-09-12	3.52	3.70	—	3.7	0.007	1.05	0.0	0.06	10.87	0.01	2.249	4.93	0.00	8.9	90.6	0.5	-6.70	0.65	0.83	3.73	3.7	0.003	0.64	0.0	0.04	13.88	0.00	2.238	7.52	0.34	6.4	93.6	0.0	-1.75	1.20	0.63	0.83	2.64	6424	892	4	0	4	0	0	logfile
✔	7XD1	33132	2023-02-20	2022-03-26	3.2	2.74	3.19	3.1	0.009	0.87	0.0	0.05	26.97	0.01	2.339	2.77	1.59	1.3	98.7	0.0	-5.83	0.76	0.83	4.00	3.1	0.006	0.66	0.0	0.04	28.71	0.01	2.046	6.46	0.16	2.4	97.6	0.0	1.20	0.48	0.78	0.85	2.65	12048	760	10	294	0	0	0	logfile
✔	7ZXY	15017	2023-02-21	2022-05-23	3.15	2.97	3.04	3.0	0.006	0.94	0.0	0.05	15.11	0.01	2.106	10.70	0.00	3.5	96.5	0.0	-0.44	0.74	0.81	3.20	3.0	0.003	0.70	0.0	0.04	15.36	0.00	2.080	9.40	0.26	3.2	96.8	0.0	0.35	0.31	0.74	0.84	2.80	15606	1913	25	0	23	0	0	logfile
✔	6Bo8	7120	2023-02-23	2017-11-18	3.6	3.64	—	3.6	0.008	1.19	0.0	0.06	10.83	0.01	2.286	7.18	0.97	11.0	89.0	0.0	-4.49	0.56	0.62	1.58	3.6	0.004	0.80	0.0	0.04	16.02	0.00	2.179	12.06	0.24	10.1	89.9	0.0	-0.60	1.34	0.75	0.80	1.82	19048	2372	4	0	0	0	0	logfile
✔	6HUJ	0279	2023-02-21	2018-10-08	3.04	3.16	3.04	3.1	0.005	0.86	0.0	0.06	8.71	0.01	2.265	4.61	0.00	4.0	96.0	0.0	-4.37	0.76	0.83	4.82	3.1	0.005	0.60	0.0	0.04	13.75	0.00	2.161	7.75	0.31	3.5	96.5	0.0	-0.11	0.65	0.76	0.87	4.18	15255	1812	15	0	35	0	0	logfile
✔	5BKK	9407	2023-02-22	2021-03-19	3.5	3.17	—	3.5	0.004	0.72	0.0	0.05	14.72	0.00	2.242	5.33	0.11	3.5	96.5	0.0	-4.88	0.68	0.82	2.52	3.5	0.003	0.56	0.0	0.05	16.37	0.00	2.142	8.29	0.33	2.9	97.1	0.0	-0.82	1.21	0.65	0.82	2.02	16831	2156	11	0	6	0	0	logfile
✔	7ND2	12273	2023-02-22	2021-01-29	4.0	4.21	—	4.0	0.011	1.65	4.0	0.09	13.92	0.01	2.172	11.78	0.22	5.0	94.7	0.3	-0.95	0.85	0.73	—	4.0	0.004	0.79	0.0	0.04	15.90	0.00	2.112	22.23	0.66	5.1	94.7	0.2	-0.38	0.68	0.86	0.75	—	16824	2204	8	0	0	0	0	logfile
✔	7EGK	31135	2023-02-19	2021-03-24	2.7	2.79	2.60	2.7	0.008	0.97	0.0	0.05	14.76	0.01	2.240	2.92	8.02	3.2	96.5	0.2	-5.67	0.74	0.87	3.24	2.7	0.003	0.65	0.0	0.04	16.50	0.00	2.213	6.00	1.84	2.8	97.2	0.0	0.97	1.21	0.72	0.88	2.11	9894	1317	12	0	6	0	0	logfile
✔	6ZB5	11145	2023-02-25	2020-06-07	2.85	2.93	2.86	2.9	0.009	0.76	1.0	0.06	17.24	0.01	1.985	2.81	3.76	7.6	92.4	0.0	-3.22	0.77	0.85	3.59	2.9	0.003	0.57	0.0	0.04	17.55	0.00	2.232	2.32	3.49	5.0	95.0	0.0	-0.95	1.13	0.77	0.86	3.40	24499	3096	9	0	29	0	0	logfile
✔	7Z7i	14533	2023-02-21	2022-03-15	3.5	4.18	3.47	3.8	0.014	1.07	0.0	0.07	14.69	0.01	1.952	3.82	0.00	5.7	94.3	0.0	-2.47	0.75	0.81	3.12	3.8	0.003	0.70	0.0	0.04	15.61	0.00	1.885	3.51	0.13	3.7	96.3	0.0	-0.02	0.70	0.75	0.83	2.48	14815	1855	10	0	15	0	0	logfile
✔	7PKo	13474	2023-02-23	2021-08-26	3.9	4.01	—	3.9	0.004	0.66	0.0	0.04	14.59	0.00	2.205	10.80	0.00	7.5	92.5	0.0	-4.16	0.76	0.82	2.59	3.9	0.003	0.65	0.0	0.04	16.06	0.00	2.180	12.19	0.62	5.6	94.4	0.0	-0.75	0.64	0.75	0.81	2.41	20368	2504	8	0	0	0	0	logfile
✔	6N7S	0362	2023-02-20	2018-11-28	4.6	4.47	—	4.4	0.008	1.20	0.0	0.07	14.87	0.01	1.812	8.33	1.04	12.5	87.5	0.0	-5.07	0.69	0.54	—	4.3	0.003	0.71	0.0	0.04	14.71	0.00	1.879	15.87	0.00	5.3	94.7	0.0	-2.15	1.90	0.71	0.59	—	12783	1607	11	13	8	0	0	logfile
✔	6o7H	0641	2023-02-22	2019-03-07	2.9	3.03	—	3.0	0.006	1.10	0.0	0.07	12.42	0.01	1.596	11.46	1.21	5.3	94.6	0.1	-4.35	0.74	0.81	3.78	3.0	0.003	0.65	0.0	0.04	16.45	0.00	2.155	8.52	1.99	4.9	95.1	0.0	-0.40	0.79	0.74	0.85	3.03	17576	2038	13	51	96	0	0	logfile
✔	6UWN	20925	2023-02-20	2019-11-05	3.5	3.59	—	3.6	0.007	0.73	0.0	0.05	13.75	0.00	2.285	3.49	0.15	3.4	96.6	0.0	-4.35	0.67	0.83	2.62	3.6	0.003	0.55	0.0	0.05	15.85	0.00	2.126	6.29	0.65	2.7	97.3	0.0	0.44	0.58	0.66	0.81	1.79	13258	1776	20	0	24	4	0	logfile
✔	6U8R	20690	2023-02-28	2019-09-05	3.91	3.97	3.83	3.9	0.019	1.84	0.0	0.08	14.05	0.01	2.188	10.11	3.21	8.7	91.0	0.3	-4.40	0.61	0.81	2.14	4.0	0.004	0.90	0.0	0.05	16.52	0.00	2.063	20.94	0.73	8.0	92.0	0.0	-2.25	1.64	0.61	0.80	0.90	31528	4016	24	0	32	0	0	logfile
✔	7EKi	31168	2023-02-21	2021-04-05	3.18	3.70	—	3.6	0.005	0.61	0.0	0.06	12.25	0.00	2.230	5.79	0.88	5.3	94.7	0.0	-1.88	0.69	0.81	2.83	3.6	0.002	0.53	0.0	0.04	13.80	0.00	2.183	5.16	0.18	5.1	94.9	0.0	-0.53	0.39	0.70	0.82	2.46	16005	1975	15	0	20	0	0	logfile
✔	6B3J	7039	2023-02-18	2017-09-22	3.3	3.63	3.26	3.5	0.007	1.00	0.0	0.06	9.89	0.01	2.229	4.31	0.00	4.2	95.8	0.0	0.60	0.66	0.73	2.35	3.5	0.003	0.66	0.0	0.04	14.91	0.00	2.186	12.43	0.31	4.3	95.7	0.0	0.92	1.71	0.70	0.78	1.51	9034	1129	6	0	0	0	0	logfile
✔	6UA2	20704	2023-02-28	2019-09-10	4.2	4.44	4.05	4.4	0.017	1.74	0.0	0.08	16.71	0.01	2.191	14.11	4.10	11.3	88.7	0.1	-4.76	0.65	0.78	—	4.4	0.003	0.92	0.0	0.05	14.43	0.01	2.104	22.04	0.00	8.5	91.4	0.0	-2.75	1.68	0.64	0.76	—	31660	4016	24	0	36	0	0	logfile

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