Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TQM	10555	2023-08-24	2019-12-16	3.8	4.34	3.78	20.0	0.014	0.98	0.0	0.12	15.01	0.01	2.083	4.06	1.40	14.5	85.5	0.0	-5.95	0.30	0.07	0.30	3.9	0.003	0.78	0.0	0.04	15.99	0.00	1.902	16.86	0.14	11.1	88.9	0.0	-3.64	1.33	0.39	0.26	0.42	39616	2578	6	0	4	0	19804	logfile
✔	7R4H	14312	2023-08-14	2022-02-08	2.34	3.05	2.43	2.9	0.006	1.22	1.0	0.06	19.22	0.01	2.119	5.33	3.93	3.7	96.3	0.0	-3.26	0.80	0.83	2.89	2.9	0.003	0.63	0.0	0.04	18.72	0.00	1.912	10.30	3.88	3.0	97.0	0.0	0.42	1.33	0.79	0.83	3.29	16485	2049	9	0	4	0	0	logfile
✔	7TRA	26084	2023-08-23	2022-01-28	3.3	3.94	—	3.8	0.003	0.60	0.0	0.04	15.24	0.00	2.017	16.19	0.00	7.6	92.1	0.3	-1.17	0.80	0.73	0.77	3.7	0.004	0.74	0.0	0.05	17.19	0.00	1.948	23.57	0.47	8.6	91.2	0.2	-1.36	1.37	0.83	0.82	1.40	34872	4174	20	113	2	0	0	logfile
✔	7S9D	24933	2023-08-11	2021-09-20	4.6	4.40	—	4.1	0.006	0.89	0.0	0.05	11.27	0.00	2.095	23.20	0.35	10.7	89.0	0.3	-0.95	0.61	0.80	—	4.1	0.002	0.63	0.0	0.04	11.92	0.00	2.234	10.40	0.00	7.4	92.3	0.3	-0.77	0.46	0.59	0.77	—	10462	1354	2	0	0	0	0	logfile
✔	6Y90	10731	2023-08-11	2020-03-06	3.69	4.05	—	4.0	0.007	0.90	0.0	0.07	14.16	0.00	2.268	7.74	0.19	2.8	97.2	0.0	0.18	0.59	0.76	1.32	4.0	0.003	0.70	0.0	0.04	16.09	0.00	2.171	11.89	0.39	4.9	95.1	0.0	-0.32	0.99	0.59	0.80	1.49	9778	1218	8	0	20	0	0	logfile
✔	7UWN	26837	2023-08-11	2022-05-03	3.01	2.26	3.04	1.6	0.004	0.64	0.0	0.04	16.59	0.00	2.105	14.51	2.21	6.1	93.9	0.0	-1.09	0.66	0.63	1.06	1.5	0.004	0.65	0.0	0.05	16.70	0.00	2.117	15.57	0.51	6.0	94.0	0.0	-1.14	0.33	0.66	0.64	0.94	10602	1325	12	0	11	0	0	logfile
✔	7SPA	25370	2023-08-10	2021-11-02	2.8	3.04	—	2.9	0.004	0.57	0.0	0.05	11.96	0.00	2.275	6.27	0.00	1.4	98.6	0.0	1.68	0.71	0.77	2.48	2.9	0.004	0.65	0.0	0.04	15.48	0.00	2.078	9.94	1.59	3.0	96.8	0.1	1.36	0.78	0.76	0.86	4.32	6017	737	3	0	3	0	0	logfile
✔	7oE3	12860	2023-08-12	2021-05-01	3.35	4.05	3.43	3.4	0.003	0.52	0.0	0.04	15.39	0.00	2.179	5.99	3.39	8.2	91.8	0.0	-2.02	0.92	0.87	2.22	3.4	0.003	0.61	0.0	0.04	16.07	0.00	2.102	7.34	0.22	8.0	92.0	0.0	0.32	0.41	0.93	0.90	1.77	11904	1478	1	0	2	0	0	logfile
✔	7T54	25694	2023-08-10	2021-12-11	4.5	7.46	4.54	4.6	0.004	0.70	1.0	0.05	10.84	0.00	2.078	8.94	0.68	4.4	95.5	0.1	0.70	0.62	0.64	—	4.6	0.005	0.74	0.0	0.04	11.24	0.00	2.155	18.95	0.00	9.4	90.3	0.3	-0.60	1.60	0.70	0.81	—	8552	1416	4	0	2	0	0	logfile
✔	7UWM	26836	2023-08-10	2022-05-03	2.5	2.14	2.51	1.9	0.004	0.59	0.0	0.04	18.27	0.00	2.107	6.68	2.96	3.0	97.0	0.0	-0.69	0.80	0.79	2.42	1.9	0.003	0.57	0.0	0.04	18.46	0.00	2.122	7.90	4.39	3.5	96.5	0.0	-0.58	0.24	0.80	0.79	2.46	7972	967	9	0	9	0	0	logfile
✔	8B01	15775	2023-08-09	2022-09-06	3.03	3.65	3.02	3.5	0.004	0.60	0.0	0.04	13.05	0.00	2.217	2.82	0.53	2.9	97.1	0.0	2.16	0.67	0.82	2.94	3.5	0.003	0.53	0.0	0.04	14.65	0.00	2.223	3.70	0.35	1.8	98.2	0.0	1.95	0.44	0.71	0.86	2.82	5478	684	5	0	15	0	0	logfile
✔	5A6F	3063	2023-08-11	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.9	0.002	0.56	0.0	0.04	10.89	0.00	2.048	8.96	0.00	4.7	95.3	0.0	-0.78	0.97	0.57	0.75	—	8881	540	2	0	43	0	4330	logfile
✔	8DWS	27758	2023-08-15	2022-08-02	3.73	4.92	3.73	3.6	0.004	0.79	4.0	0.05	14.37	0.00	2.013	6.84	0.32	8.2	91.2	0.6	-1.47	0.69	0.45	0.78	3.6	0.007	0.92	0.0	0.05	15.86	0.00	2.010	32.17	0.21	9.9	89.5	0.6	-1.42	1.99	0.90	0.83	0.71	17229	2182	7	0	0	0	0	logfile
✔	6KLL	0711	2023-08-12	2019-07-30	3.0	3.78	—	3.3	0.007	0.78	0.0	0.05	15.55	0.00	1.944	7.72	7.64	5.4	94.6	0.0	-3.74	0.68	0.87	3.00	3.3	0.004	0.60	0.0	0.05	15.87	0.00	1.892	6.74	2.71	4.1	95.9	0.0	-0.28	1.18	0.68	0.90	2.59	11748	1488	8	0	8	0	0	logfile
✔	8AZA	15757	2023-08-09	2022-09-05	3.15	4.29	3.15	3.5	0.004	0.76	1.0	0.05	17.83	0.01	2.202	26.58	0.73	4.9	95.1	0.0	-0.75	0.83	0.67	0.65	3.5	0.003	0.79	0.0	0.05	18.00	0.01	2.231	23.06	0.55	4.6	95.4	0.0	-0.53	0.69	0.84	0.71	0.66	4970	606	4	0	1	0	0	logfile
✔	7UPi	26667	2023-08-10	2022-04-15	2.89	3.71	2.90	3.2	0.002	0.55	0.0	0.04	9.09	0.00	1.843	2.56	0.00	1.9	98.1	0.0	-0.12	0.91	0.87	3.97	3.2	0.002	0.56	0.0	0.04	10.89	0.00	2.006	4.22	0.11	2.1	97.9	0.0	-0.22	2.21	0.90	0.89	3.98	7775	972	5	0	5	0	0	logfile
✔	7N72	24217	2023-08-10	2021-06-09	2.5	3.08	2.57	2.9	0.007	1.35	0.0	0.06	13.10	0.01	1.971	6.06	0.00	1.4	98.6	0.0	-0.87	0.72	0.85	3.04	2.9	0.004	0.86	0.0	0.04	14.42	0.00	1.683	5.79	0.40	2.4	97.6	0.0	2.13	0.44	0.67	0.83	3.01	7705	1030	1	0	11	5	0	logfile
✔	7S9E	24934	2023-08-11	2021-09-20	3.7	3.21	—	3.6	0.004	0.72	0.0	0.05	13.53	0.00	2.202	11.48	0.00	7.1	92.9	0.0	-0.36	0.60	0.81	2.60	3.6	0.003	0.59	0.0	0.04	15.29	0.00	2.245	10.30	0.35	6.3	93.7	0.0	0.89	0.48	0.61	0.81	2.46	10476	1354	4	0	2	0	0	logfile
✔	7SYE	25523	2023-08-16	2021-11-24	3.3	4.16	—	3.5	0.007	0.86	2.0	0.05	14.40	0.00	2.060	11.84	1.65	14.8	84.9	0.3	-4.43	0.85	0.77	2.18	3.5	0.003	0.68	0.0	0.04	14.87	0.00	2.121	11.74	0.35	10.4	89.5	0.1	-1.89	0.56	0.89	0.86	2.05	10216	1322	4	0	0	0	0	logfile
✔	6VQT	21356	2023-08-11	2020-02-05	3.03	4.54	3.09	4.1	0.009	1.15	0.0	0.06	16.32	0.01	1.733	10.32	4.94	2.7	97.3	0.0	1.39	0.78	0.80	1.43	4.1	0.003	0.74	0.0	0.04	16.60	0.00	1.052	9.77	0.32	3.0	97.0	0.0	2.30	1.06	0.77	0.84	1.48	9144	1168	4	0	6	0	0	logfile

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