Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LCC	23271	2023-08-12	2021-01-10	3.66	4.08	—	4.0	0.012	1.53	3.0	0.11	14.19	0.00	2.026	3.94	6.10	2.3	97.7	0.0	1.96	0.81	0.82	1.58	4.0	0.003	0.60	0.0	0.04	15.98	0.00	2.220	7.51	0.41	4.0	96.0	0.0	0.45	1.35	0.75	0.80	1.49	11281	1369	3	17	1	0	0	logfile
✔	6SHQ	10203	2023-08-19	2019-08-07	3.2	3.65	—	3.6	0.011	1.28	2.0	0.10	14.46	0.01	2.246	10.32	2.28	7.9	92.1	0.0	-3.69	0.54	0.66	4.02	3.6	0.003	0.62	0.0	0.04	14.98	0.00	2.064	5.49	0.21	3.8	96.2	0.0	-1.21	1.23	0.66	0.80	4.13	26826	1696	8	0	4	0	13258	logfile
✔	6ZKU	11262	2023-08-13	2020-06-30	3.0	2.73	—	2.9	0.009	1.03	0.0	1.04	11.65	0.01	2.218	4.96	0.06	4.1	95.9	0.0	-2.98	0.62	0.82	3.82	2.9	0.008	1.62	0.0	0.31	16.36	0.00	2.080	11.79	2.02	3.6	96.4	0.0	0.45	0.67	0.63	0.83	3.04	65505	7966	69	0	36	0	0	logfile
✔	6SPG	10285	2023-08-25	2019-09-01	3.34	3.45	—	3.4	0.007	0.91	0.0	0.05	16.43	0.01	0.514	3.96	0.30	8.6	91.4	0.0	-5.03	0.84	0.81	2.64	3.4	0.005	0.72	0.0	0.04	17.07	0.01	1.832	9.45	0.61	8.9	91.1	0.0	-2.69	0.66	0.87	0.86	2.05	141963	5779	58	4526	172	0	0	logfile
✔	6M49	30074	2023-08-09	2020-03-06	3.7	4.45	—	4.4	0.008	0.85	0.0	0.05	14.32	0.01	2.079	14.80	0.98	7.1	92.6	0.2	-4.00	0.46	0.70	1.15	4.4	0.003	0.83	0.0	0.04	16.10	0.00	2.207	9.92	0.66	2.7	97.3	0.0	1.88	3.60	0.48	0.74	1.01	3098	420	3	0	1	0	0	logfile
✔	6L42	0828	2023-08-13	2019-10-15	3.4	3.83	—	3.7	0.013	3.32	109.0	0.17	16.55	0.02	1.223	41.56	6.61	11.4	86.6	2.0	-5.16	0.79	0.75	1.25	3.7	0.004	0.88	0.0	0.05	16.72	0.01	2.057	13.83	0.43	11.2	88.5	0.3	-2.67	0.84	0.82	0.84	1.45	14827	1864	1	0	1	0	0	logfile
✔	6SHJ	10199	2023-08-18	2019-08-07	3.2	3.72	—	3.7	0.010	1.04	6.0	0.07	14.26	0.01	2.114	4.81	3.58	7.0	92.9	0.1	-4.39	0.49	0.56	2.91	3.7	0.002	0.57	0.0	0.04	15.08	0.00	1.972	7.47	0.29	4.8	95.2	0.0	-2.15	1.27	0.64	0.76	3.20	25934	1664	8	0	4	0	12832	logfile
✔	6ZKF	11247	2023-08-14	2020-06-30	2.8	2.93	—	2.9	0.008	1.02	0.0	1.03	11.79	0.01	2.232	5.07	0.06	3.4	96.6	0.0	-2.83	0.73	0.86	4.28	2.9	0.009	1.59	0.0	0.31	16.18	0.00	2.070	11.11	1.75	3.0	97.0	0.0	0.75	1.62	0.73	0.87	3.55	67440	8158	69	0	46	0	0	logfile
✔	7RU6	24698	2023-08-09	2021-08-16	4.4	4.33	3.79	4.2	0.003	0.59	0.0	0.04	15.25	0.00	2.027	10.32	0.00	0.3	99.7	0.0	3.15	0.71	0.67	—	4.2	0.002	0.50	0.0	0.03	13.30	0.00	2.118	7.19	0.34	1.9	98.1	0.0	4.08	0.78	0.74	0.70	—	5426	331	2	0	0	0	2725	logfile
✔	6VP0	21302	2023-08-10	2020-02-01	3.1	3.70	3.19	3.6	0.011	1.37	0.0	0.05	19.19	0.00	2.316	5.31	1.96	3.5	96.5	0.0	-1.11	0.58	0.77	3.02	3.6	0.003	0.54	0.0	0.04	17.18	0.00	2.329	6.34	0.14	2.0	98.0	0.0	2.59	1.36	0.56	0.78	2.35	7210	808	4	0	12	0	0	logfile
✔	7X5H	33014	2023-08-10	2022-03-04	3.1	3.30	—	3.3	0.003	0.52	0.0	0.04	14.22	0.00	2.148	4.44	0.00	1.9	98.1	0.0	2.43	0.64	0.79	2.26	3.3	0.003	0.51	0.0	0.04	15.49	0.00	2.162	6.69	0.32	2.4	97.6	0.0	1.62	0.42	0.66	0.83	2.36	8768	1128	5	0	1	0	0	logfile
✔	5NGM	3640	2023-08-24	2017-03-18	2.9	3.05	—	3.0	0.006	0.86	0.0	0.05	17.23	0.01	0.270	7.58	0.81	8.3	91.7	0.0	-4.79	0.70	0.72	2.80	3.0	0.005	0.63	0.0	0.04	17.58	0.00	1.847	11.83	4.43	6.7	93.3	0.0	-1.89	0.66	0.78	0.85	2.33	140965	5610	57	4559	205	0	0	logfile
✔	7XAT	33098	2023-08-10	2022-03-19	2.85	3.05	2.92	3.1	0.010	1.00	0.0	0.06	13.72	0.01	2.215	5.11	0.82	6.7	93.3	0.0	-4.15	0.66	0.82	3.83	3.1	0.003	0.65	0.0	0.04	15.69	0.00	2.178	9.24	3.39	5.1	94.9	0.0	-1.01	0.53	0.65	0.82	3.43	8470	1153	6	0	0	0	0	logfile
✔	7XSN	33428	2023-08-10	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	16.67	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.61	0.0	0.03	16.36	0.00	2.111	20.82	0.00	0.0	0.0	0.0	—	0.30	0.92	0.87	—	8279	0	1	387	0	0	0	logfile
✔	7F1S	31424	2023-08-10	2021-06-09	2.8	3.44	—	3.2	0.002	0.55	0.0	0.04	10.91	0.00	2.228	9.48	0.00	3.5	96.5	0.0	-1.65	0.69	0.76	1.35	3.2	0.003	0.69	0.0	0.04	14.92	0.00	2.156	13.22	2.68	4.0	96.0	0.0	0.06	1.18	0.70	0.80	2.16	6209	847	4	0	0	0	0	logfile
✔	6RFL	4868	2023-08-10	2019-04-15	2.76	2.94	—	2.9	0.005	0.76	0.0	0.08	14.26	0.01	1.641	4.30	4.82	6.2	93.7	0.0	-3.54	0.73	0.83	3.73	2.9	0.003	0.60	0.0	0.04	16.39	0.00	2.092	8.47	2.67	6.1	93.9	0.0	-0.76	0.51	0.75	0.85	3.38	51788	6194	29	63	5	61	0	logfile
✔	8D96	27256	2023-08-11	2022-06-09	3.35	4.21	3.32	3.9	0.002	0.58	0.0	0.04	17.10	0.00	1.836	7.87	0.11	2.5	97.3	0.2	2.00	0.89	0.85	1.96	3.8	0.002	0.48	0.0	0.04	17.33	0.00	1.431	5.89	0.32	2.7	97.1	0.2	1.92	0.41	0.90	0.88	1.95	9203	1056	6	30	4	0	0	logfile
✔	8oHS	16884	2023-08-13	2023-03-21	4.1	4.12	3.94	4.0	0.009	1.09	0.0	0.08	14.89	0.00	0.697	2.69	0.41	4.5	95.5	0.0	-1.04	0.47	0.78	—	4.0	0.003	0.67	0.0	0.04	13.86	0.00	2.228	6.93	0.07	1.7	98.3	0.0	1.31	3.02	0.50	0.85	—	13335	1758	9	0	0	0	0	logfile
✔	3JCS	6583	2023-08-12	2016-01-21	2.8	3.07	—	3.0	0.009	0.98	1.0	0.05	19.59	0.03	1.093	24.89	1.41	11.8	88.0	0.2	-5.35	0.72	0.78	3.98	3.0	0.007	0.87	0.0	0.04	19.74	0.01	1.858	17.70	3.25	10.3	89.7	0.1	-2.53	0.54	0.71	0.80	2.77	117257	5847	74	3420	109	144	0	logfile
✔	7SB2	24961	2023-08-09	2021-09-23	3.4	3.66	3.14	3.3	0.007	0.79	0.0	0.04	14.92	0.00	2.178	23.65	0.00	8.4	91.4	0.2	-0.29	0.83	0.84	1.22	3.3	0.003	0.72	0.0	0.04	16.36	0.00	2.237	17.31	0.40	5.9	94.1	0.0	0.78	0.47	0.82	0.85	0.71	4715	598	2	0	0	0	0	logfile

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