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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7LCC | 23271 | 2023-08-12 | 2021-01-10 | 3.66 | 4.08 | — | 4.0 | 0.012 | 1.53 | 3.0 | 0.11 | 14.19 | 0.00 | 2.026 | 3.94 | 6.10 | 2.3 | 97.7 | 0.0 | 1.96 | 0.81 | 0.82 | 1.58 | 4.0 | 0.003 | 0.60 | 0.0 | 0.04 | 15.98 | 0.00 | 2.220 | 7.51 | 0.41 | 4.0 | 96.0 | 0.0 | 0.45 | 1.35 | 0.75 | 0.80 | 1.49 | 11281 | 1369 | 3 | 17 | 1 | 0 | 0 | logfile |
✔ | 6SHQ | 10203 | 2023-08-19 | 2019-08-07 | 3.2 | 3.65 | — | 3.6 | 0.011 | 1.28 | 2.0 | 0.10 | 14.46 | 0.01 | 2.246 | 10.32 | 2.28 | 7.9 | 92.1 | 0.0 | -3.69 | 0.54 | 0.66 | 4.02 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 14.98 | 0.00 | 2.064 | 5.49 | 0.21 | 3.8 | 96.2 | 0.0 | -1.21 | 1.23 | 0.66 | 0.80 | 4.13 | 26826 | 1696 | 8 | 0 | 4 | 0 | 13258 | logfile |
✔ | 6ZKU | 11262 | 2023-08-13 | 2020-06-30 | 3.0 | 2.73 | — | 2.9 | 0.009 | 1.03 | 0.0 | 1.04 | 11.65 | 0.01 | 2.218 | 4.96 | 0.06 | 4.1 | 95.9 | 0.0 | -2.98 | 0.62 | 0.82 | 3.82 | 2.9 | 0.008 | 1.62 | 0.0 | 0.31 | 16.36 | 0.00 | 2.080 | 11.79 | 2.02 | 3.6 | 96.4 | 0.0 | 0.45 | 0.67 | 0.63 | 0.83 | 3.04 | 65505 | 7966 | 69 | 0 | 36 | 0 | 0 | logfile |
✔ | 6SPG | 10285 | 2023-08-25 | 2019-09-01 | 3.34 | 3.45 | — | 3.4 | 0.007 | 0.91 | 0.0 | 0.05 | 16.43 | 0.01 | 0.514 | 3.96 | 0.30 | 8.6 | 91.4 | 0.0 | -5.03 | 0.84 | 0.81 | 2.64 | 3.4 | 0.005 | 0.72 | 0.0 | 0.04 | 17.07 | 0.01 | 1.832 | 9.45 | 0.61 | 8.9 | 91.1 | 0.0 | -2.69 | 0.66 | 0.87 | 0.86 | 2.05 | 141963 | 5779 | 58 | 4526 | 172 | 0 | 0 | logfile |
✔ | 6M49 | 30074 | 2023-08-09 | 2020-03-06 | 3.7 | 4.45 | — | 4.4 | 0.008 | 0.85 | 0.0 | 0.05 | 14.32 | 0.01 | 2.079 | 14.80 | 0.98 | 7.1 | 92.6 | 0.2 | -4.00 | 0.46 | 0.70 | 1.15 | 4.4 | 0.003 | 0.83 | 0.0 | 0.04 | 16.10 | 0.00 | 2.207 | 9.92 | 0.66 | 2.7 | 97.3 | 0.0 | 1.88 | 3.60 | 0.48 | 0.74 | 1.01 | 3098 | 420 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6L42 | 0828 | 2023-08-13 | 2019-10-15 | 3.4 | 3.83 | — | 3.7 | 0.013 | 3.32 | 109.0 | 0.17 | 16.55 | 0.02 | 1.223 | 41.56 | 6.61 | 11.4 | 86.6 | 2.0 | -5.16 | 0.79 | 0.75 | 1.25 | 3.7 | 0.004 | 0.88 | 0.0 | 0.05 | 16.72 | 0.01 | 2.057 | 13.83 | 0.43 | 11.2 | 88.5 | 0.3 | -2.67 | 0.84 | 0.82 | 0.84 | 1.45 | 14827 | 1864 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6SHJ | 10199 | 2023-08-18 | 2019-08-07 | 3.2 | 3.72 | — | 3.7 | 0.010 | 1.04 | 6.0 | 0.07 | 14.26 | 0.01 | 2.114 | 4.81 | 3.58 | 7.0 | 92.9 | 0.1 | -4.39 | 0.49 | 0.56 | 2.91 | 3.7 | 0.002 | 0.57 | 0.0 | 0.04 | 15.08 | 0.00 | 1.972 | 7.47 | 0.29 | 4.8 | 95.2 | 0.0 | -2.15 | 1.27 | 0.64 | 0.76 | 3.20 | 25934 | 1664 | 8 | 0 | 4 | 0 | 12832 | logfile |
✔ | 6ZKF | 11247 | 2023-08-14 | 2020-06-30 | 2.8 | 2.93 | — | 2.9 | 0.008 | 1.02 | 0.0 | 1.03 | 11.79 | 0.01 | 2.232 | 5.07 | 0.06 | 3.4 | 96.6 | 0.0 | -2.83 | 0.73 | 0.86 | 4.28 | 2.9 | 0.009 | 1.59 | 0.0 | 0.31 | 16.18 | 0.00 | 2.070 | 11.11 | 1.75 | 3.0 | 97.0 | 0.0 | 0.75 | 1.62 | 0.73 | 0.87 | 3.55 | 67440 | 8158 | 69 | 0 | 46 | 0 | 0 | logfile |
✔ | 7RU6 | 24698 | 2023-08-09 | 2021-08-16 | 4.4 | 4.33 | 3.79 | 4.2 | 0.003 | 0.59 | 0.0 | 0.04 | 15.25 | 0.00 | 2.027 | 10.32 | 0.00 | 0.3 | 99.7 | 0.0 | 3.15 | 0.71 | 0.67 | — | 4.2 | 0.002 | 0.50 | 0.0 | 0.03 | 13.30 | 0.00 | 2.118 | 7.19 | 0.34 | 1.9 | 98.1 | 0.0 | 4.08 | 0.78 | 0.74 | 0.70 | — | 5426 | 331 | 2 | 0 | 0 | 0 | 2725 | logfile |
✔ | 6VP0 | 21302 | 2023-08-10 | 2020-02-01 | 3.1 | 3.70 | 3.19 | 3.6 | 0.011 | 1.37 | 0.0 | 0.05 | 19.19 | 0.00 | 2.316 | 5.31 | 1.96 | 3.5 | 96.5 | 0.0 | -1.11 | 0.58 | 0.77 | 3.02 | 3.6 | 0.003 | 0.54 | 0.0 | 0.04 | 17.18 | 0.00 | 2.329 | 6.34 | 0.14 | 2.0 | 98.0 | 0.0 | 2.59 | 1.36 | 0.56 | 0.78 | 2.35 | 7210 | 808 | 4 | 0 | 12 | 0 | 0 | logfile |
✔ | 7X5H | 33014 | 2023-08-10 | 2022-03-04 | 3.1 | 3.30 | — | 3.3 | 0.003 | 0.52 | 0.0 | 0.04 | 14.22 | 0.00 | 2.148 | 4.44 | 0.00 | 1.9 | 98.1 | 0.0 | 2.43 | 0.64 | 0.79 | 2.26 | 3.3 | 0.003 | 0.51 | 0.0 | 0.04 | 15.49 | 0.00 | 2.162 | 6.69 | 0.32 | 2.4 | 97.6 | 0.0 | 1.62 | 0.42 | 0.66 | 0.83 | 2.36 | 8768 | 1128 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 5NGM | 3640 | 2023-08-24 | 2017-03-18 | 2.9 | 3.05 | — | 3.0 | 0.006 | 0.86 | 0.0 | 0.05 | 17.23 | 0.01 | 0.270 | 7.58 | 0.81 | 8.3 | 91.7 | 0.0 | -4.79 | 0.70 | 0.72 | 2.80 | 3.0 | 0.005 | 0.63 | 0.0 | 0.04 | 17.58 | 0.00 | 1.847 | 11.83 | 4.43 | 6.7 | 93.3 | 0.0 | -1.89 | 0.66 | 0.78 | 0.85 | 2.33 | 140965 | 5610 | 57 | 4559 | 205 | 0 | 0 | logfile |
✔ | 7XAT | 33098 | 2023-08-10 | 2022-03-19 | 2.85 | 3.05 | 2.92 | 3.1 | 0.010 | 1.00 | 0.0 | 0.06 | 13.72 | 0.01 | 2.215 | 5.11 | 0.82 | 6.7 | 93.3 | 0.0 | -4.15 | 0.66 | 0.82 | 3.83 | 3.1 | 0.003 | 0.65 | 0.0 | 0.04 | 15.69 | 0.00 | 2.178 | 9.24 | 3.39 | 5.1 | 94.9 | 0.0 | -1.01 | 0.53 | 0.65 | 0.82 | 3.43 | 8470 | 1153 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XSN | 33428 | 2023-08-10 | 2022-05-14 | 3.01 | 4.02 | 3.04 | 3.2 | 0.013 | 1.06 | 0.0 | 0.05 | 16.67 | 0.01 | 2.252 | 5.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.84 | — | 3.2 | 0.006 | 0.61 | 0.0 | 0.03 | 16.36 | 0.00 | 2.111 | 20.82 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.30 | 0.92 | 0.87 | — | 8279 | 0 | 1 | 387 | 0 | 0 | 0 | logfile |
✔ | 7F1S | 31424 | 2023-08-10 | 2021-06-09 | 2.8 | 3.44 | — | 3.2 | 0.002 | 0.55 | 0.0 | 0.04 | 10.91 | 0.00 | 2.228 | 9.48 | 0.00 | 3.5 | 96.5 | 0.0 | -1.65 | 0.69 | 0.76 | 1.35 | 3.2 | 0.003 | 0.69 | 0.0 | 0.04 | 14.92 | 0.00 | 2.156 | 13.22 | 2.68 | 4.0 | 96.0 | 0.0 | 0.06 | 1.18 | 0.70 | 0.80 | 2.16 | 6209 | 847 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RFL | 4868 | 2023-08-10 | 2019-04-15 | 2.76 | 2.94 | — | 2.9 | 0.005 | 0.76 | 0.0 | 0.08 | 14.26 | 0.01 | 1.641 | 4.30 | 4.82 | 6.2 | 93.7 | 0.0 | -3.54 | 0.73 | 0.83 | 3.73 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 16.39 | 0.00 | 2.092 | 8.47 | 2.67 | 6.1 | 93.9 | 0.0 | -0.76 | 0.51 | 0.75 | 0.85 | 3.38 | 51788 | 6194 | 29 | 63 | 5 | 61 | 0 | logfile |
✔ | 8D96 | 27256 | 2023-08-11 | 2022-06-09 | 3.35 | 4.21 | 3.32 | 3.9 | 0.002 | 0.58 | 0.0 | 0.04 | 17.10 | 0.00 | 1.836 | 7.87 | 0.11 | 2.5 | 97.3 | 0.2 | 2.00 | 0.89 | 0.85 | 1.96 | 3.8 | 0.002 | 0.48 | 0.0 | 0.04 | 17.33 | 0.00 | 1.431 | 5.89 | 0.32 | 2.7 | 97.1 | 0.2 | 1.92 | 0.41 | 0.90 | 0.88 | 1.95 | 9203 | 1056 | 6 | 30 | 4 | 0 | 0 | logfile |
✔ | 8oHS | 16884 | 2023-08-13 | 2023-03-21 | 4.1 | 4.12 | 3.94 | 4.0 | 0.009 | 1.09 | 0.0 | 0.08 | 14.89 | 0.00 | 0.697 | 2.69 | 0.41 | 4.5 | 95.5 | 0.0 | -1.04 | 0.47 | 0.78 | — | 4.0 | 0.003 | 0.67 | 0.0 | 0.04 | 13.86 | 0.00 | 2.228 | 6.93 | 0.07 | 1.7 | 98.3 | 0.0 | 1.31 | 3.02 | 0.50 | 0.85 | — | 13335 | 1758 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JCS | 6583 | 2023-08-12 | 2016-01-21 | 2.8 | 3.07 | — | 3.0 | 0.009 | 0.98 | 1.0 | 0.05 | 19.59 | 0.03 | 1.093 | 24.89 | 1.41 | 11.8 | 88.0 | 0.2 | -5.35 | 0.72 | 0.78 | 3.98 | 3.0 | 0.007 | 0.87 | 0.0 | 0.04 | 19.74 | 0.01 | 1.858 | 17.70 | 3.25 | 10.3 | 89.7 | 0.1 | -2.53 | 0.54 | 0.71 | 0.80 | 2.77 | 117257 | 5847 | 74 | 3420 | 109 | 144 | 0 | logfile |
✔ | 7SB2 | 24961 | 2023-08-09 | 2021-09-23 | 3.4 | 3.66 | 3.14 | 3.3 | 0.007 | 0.79 | 0.0 | 0.04 | 14.92 | 0.00 | 2.178 | 23.65 | 0.00 | 8.4 | 91.4 | 0.2 | -0.29 | 0.83 | 0.84 | 1.22 | 3.3 | 0.003 | 0.72 | 0.0 | 0.04 | 16.36 | 0.00 | 2.237 | 17.31 | 0.40 | 5.9 | 94.1 | 0.0 | 0.78 | 0.47 | 0.82 | 0.85 | 0.71 | 4715 | 598 | 2 | 0 | 0 | 0 | 0 | logfile |