Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KDE	22820	2022-05-15	2020-10-08	3.55	3.68	—	3.6	0.008	0.94	0.0	0.06	13.50	0.01	2.097	9.81	0.00	12.5	87.1	0.4	-3.58	0.73	0.86	3.16	3.6	0.003	0.68	0.0	0.05	14.96	0.00	2.091	8.22	0.19	7.9	91.9	0.3	-2.07	0.40	0.72	0.85	2.25	25487	3069	48	0	134	0	0	logfile
✔	6WDR	21644	2022-05-15	2020-04-01	3.7	3.72	—	3.4	0.013	1.27	2.0	0.07	19.74	0.01	2.181	8.82	1.35	11.7	88.2	0.1	-5.01	0.85	0.81	1.85	3.4	0.009	0.80	0.0	0.04	19.41	0.01	2.016	16.98	0.50	8.2	91.7	0.0	-2.68	1.85	0.85	0.82	1.79	74473	4984	32	1647	0	0	0	logfile
✔	6X87	22089	2022-05-17	2020-06-01	3.2	3.56	—	3.5	0.002	0.52	0.0	0.04	11.69	0.01	2.262	5.90	0.11	4.2	95.8	0.0	-1.72	0.60	0.62	2.46	3.5	0.008	0.87	1.0	0.04	14.89	0.01	2.096	11.35	0.38	2.7	97.3	0.0	-0.29	0.72	0.68	0.77	2.78	23173	3085	15	0	0	0	0	logfile
✔	6PLW	20378	2022-05-13	2019-07-01	3.0	3.83	—	3.5	0.010	0.99	0.0	0.06	9.83	0.01	2.276	5.24	0.00	3.5	96.5	0.0	-4.80	0.76	0.88	4.48	3.5	0.003	0.72	0.0	0.04	14.06	0.00	2.082	11.66	2.19	3.5	96.5	0.0	-0.91	0.73	0.76	0.88	3.77	14095	1730	15	0	20	0	0	logfile
✔	6Z5L	11079	2022-05-25	2020-05-26	3.8	4.08	—	3.9	0.004	0.63	0.0	0.03	15.41	0.00	1.986	3.72	0.00	5.2	94.8	0.0	1.60	0.53	0.68	0.31	3.9	0.004	0.73	0.0	0.04	17.30	0.00	2.134	14.41	0.27	4.6	95.4	0.0	2.36	1.29	0.58	0.86	1.00	154880	20080	80	0	0	0	0	logfile
✔	7BYL	30244	2022-05-14	2020-04-23	2.5	3.69	—	2.9	0.008	1.25	0.0	0.05	18.87	0.01	2.089	13.52	5.31	1.4	98.4	0.2	-0.53	0.56	0.60	2.18	3.1	0.005	0.88	0.0	0.04	17.83	0.00	2.143	13.09	1.95	1.7	98.1	0.2	1.91	1.02	0.64	0.84	2.42	16332	2000	16	0	8	12	0	logfile
✔	6PLQ	20372	2022-05-13	2019-07-01	3.4	4.30	—	4.3	0.001	0.46	0.0	0.04	7.10	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.57	0.36	0.62	4.0	0.014	1.11	0.0	0.05	14.48	0.01	2.108	16.00	0.52	3.8	96.2	0.0	-1.09	1.67	0.71	0.72	0.89	14240	1730	15	0	20	0	0	logfile
✔	6M1Y	30049	2022-05-13	2020-02-26	3.2	3.58	—	3.4	0.006	0.93	0.0	0.06	14.01	0.01	2.245	5.85	1.65	9.6	89.0	1.4	-6.04	0.71	0.84	2.56	3.4	0.003	0.70	0.0	0.04	14.86	0.00	2.166	6.12	0.38	9.0	90.6	0.4	-0.56	3.51	0.71	0.88	2.83	14858	1876	12	0	22	2	0	logfile
✔	6YUP	10933	2022-05-13	2020-04-27	2.9	3.05	2.81	3.1	0.005	0.58	1.0	0.06	13.33	0.00	1.758	13.42	1.98	3.0	96.6	0.4	-3.94	0.64	0.74	3.19	3.0	0.003	0.62	0.0	0.04	15.26	0.00	2.232	8.19	1.67	4.7	95.3	0.0	-0.37	1.39	0.71	0.90	3.26	14774	1844	6	0	10	0	0	logfile
✔	7AE1	11736	2022-05-17	2020-09-17	2.8	3.75	2.86	3.2	0.008	1.05	2.0	0.06	12.07	0.01	1.628	2.24	0.45	4.0	95.9	0.1	-2.03	0.88	0.85	3.92	3.2	0.003	0.66	0.0	0.04	14.18	0.00	1.954	7.08	0.93	3.3	96.7	0.0	0.34	3.04	0.88	0.86	2.92	42608	5243	27	44	9	0	0	logfile
✔	6YUZ	10936	2022-05-13	2020-04-27	2.8	2.85	2.72	2.9	0.006	0.55	1.0	0.04	13.88	0.00	2.235	6.15	2.33	3.8	95.9	0.3	-3.67	0.66	0.85	3.38	2.9	0.003	0.58	0.0	0.04	15.41	0.00	2.241	6.93	2.23	5.7	94.2	0.2	-0.71	1.83	0.67	0.90	3.88	9782	1188	4	0	10	0	0	logfile
✔	7AE3	11738	2022-05-17	2020-09-17	3.1	3.92	3.23	3.0	0.008	0.97	1.0	0.06	11.10	0.01	1.688	3.49	0.37	4.2	95.7	0.1	-4.00	0.85	0.76	1.37	3.2	0.007	0.82	0.0	0.04	13.57	0.00	1.883	11.09	0.11	4.3	95.6	0.1	-0.18	1.32	0.89	0.87	2.37	42525	5232	27	44	9	0	0	logfile
✔	7BYM	30245	2022-05-14	2020-04-23	3.1	3.49	—	3.6	0.009	1.26	0.0	0.05	18.86	0.01	1.997	23.20	8.67	1.4	98.4	0.2	-0.33	0.46	0.48	1.34	3.5	0.003	0.61	0.0	0.03	17.05	0.00	2.168	9.93	0.24	1.1	98.8	0.1	2.58	0.92	0.55	0.74	1.47	16411	2000	16	0	11	4	0	logfile
✔	7K61	22686	2022-05-14	2020-09-17	2.85	3.27	—	3.1	0.007	0.67	0.0	0.04	27.29	0.00	2.130	6.03	0.00	1.5	98.5	0.0	1.15	0.85	0.86	4.35	3.1	0.004	0.57	0.0	0.03	27.87	0.00	2.129	7.81	1.25	2.1	97.9	0.0	2.03	0.36	0.86	0.88	3.49	17723	1222	12	394	0	0	0	logfile
✔	7JGJ	22328	2022-05-13	2020-07-19	4.8	7.06	—	6.5	0.013	2.22	17.0	0.31	17.49	0.01	1.656	7.23	12.68	7.2	91.6	1.2	-2.09	0.88	0.68	—	6.5	0.003	0.76	0.0	0.04	13.54	0.00	2.130	27.09	0.00	7.7	92.2	0.1	-2.19	1.26	0.84	0.48	—	13324	1707	3	0	0	0	0	logfile
✔	6M23	30061	2022-05-13	2020-02-26	3.2	3.49	—	3.3	0.010	1.11	0.0	0.07	14.80	0.01	2.216	8.07	2.32	10.7	87.8	1.5	-6.36	0.68	0.79	2.75	3.4	0.004	0.77	0.0	0.04	15.74	0.00	2.106	8.38	0.26	10.6	88.8	0.5	-1.61	0.76	0.67	0.83	2.24	14744	1872	12	0	18	2	0	logfile
✔	7CN1	30413	2022-05-12	2020-07-29	3.7	3.74	—	3.7	0.008	0.78	0.0	0.05	13.72	0.00	2.147	16.07	0.32	10.2	89.8	0.0	-3.65	0.47	0.79	1.71	3.7	0.003	0.71	0.0	0.04	15.20	0.00	2.222	9.51	0.00	5.9	94.1	0.0	0.41	0.58	0.48	0.75	1.44	6290	822	6	0	3	0	0	logfile
✔	6M22	30058	2022-05-13	2020-02-26	2.7	2.86	—	2.8	0.009	1.03	0.0	0.06	14.26	0.01	1.962	4.54	1.22	7.5	91.7	0.8	-5.21	0.74	0.84	3.10	2.8	0.003	0.64	2.0	0.04	16.09	0.00	2.221	3.97	2.10	7.3	92.5	0.1	0.49	0.62	0.72	0.88	2.83	14028	1770	12	0	24	40	0	logfile
✔	7BP0	30138	2022-05-17	2020-03-20	4.6	4.05	—	4.2	0.014	2.51	229.0	0.17	20.41	0.02	1.115	151.43	28.18	10.1	84.8	5.1	-1.64	0.62	0.71	—	4.2	0.004	1.06	0.0	0.05	15.03	0.01	2.103	20.38	0.00	13.0	86.1	0.9	-2.72	1.43	0.60	0.68	—	41388	5244	12	0	0	0	0	logfile
✔	6M4o	30080	2022-05-12	2020-03-08	3.4	3.64	—	3.6	0.007	1.14	0.0	0.06	11.53	0.01	2.203	4.69	1.15	11.4	88.4	0.2	-5.81	0.66	0.81	3.38	3.6	0.009	0.85	0.0	0.04	15.52	0.01	2.125	10.73	0.42	9.3	90.7	0.0	-1.77	1.75	0.68	0.83	2.59	8918	1127	6	0	1	0	0	logfile

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