Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KWZ	23059	2022-11-29	2020-12-02	3.2	3.41	—	3.4	0.006	0.80	0.0	0.05	12.48	0.00	2.271	14.29	0.00	7.3	92.7	0.0	-5.51	0.47	0.81	4.47	3.4	0.008	0.97	0.0	0.05	15.62	0.01	2.151	21.09	1.14	20.0	80.0	0.0	-5.58	1.07	0.49	0.85	4.11	4695	695	5	0	0	0	0	logfile
✔	6WYK	21967	2022-11-29	2020-05-13	4.0	4.14	—	4.2	0.007	0.77	0.0	0.05	11.98	0.00	2.223	5.97	0.00	3.4	96.6	0.0	-2.28	0.62	0.77	—	4.2	0.004	0.82	0.0	0.04	16.48	0.00	2.158	11.62	0.31	2.7	97.3	0.0	1.72	0.84	0.62	0.78	—	3083	415	1	0	0	0	0	logfile
✔	7KJR	22898	2022-11-29	2020-10-26	2.08	2.52	2.15	2.4	0.006	0.84	0.0	0.05	16.31	0.00	2.254	8.14	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.003	0.52	0.0	0.04	16.17	0.00	2.108	10.44	0.74	2.3	97.7	0.0	1.38	0.39	0.63	0.85	4.62	3840	448	8	0	2	122	0	logfile
✔	6WYJ	21966	2022-11-29	2020-05-13	3.7	3.74	—	3.8	0.010	0.64	0.0	0.05	12.33	0.00	2.268	5.08	0.00	5.3	94.7	0.0	-4.80	0.59	0.78	4.37	3.8	0.004	0.61	0.0	0.04	14.39	0.00	2.257	5.25	0.96	1.5	98.5	0.0	1.66	0.59	0.64	0.80	1.50	2949	398	1	0	0	0	0	logfile
✔	6X12	21986	2022-11-29	2020-05-18	3.52	3.69	—	3.7	0.008	1.08	0.0	0.06	15.87	0.01	2.322	3.01	0.00	2.7	97.3	0.0	-5.29	0.65	0.84	1.43	3.7	0.003	0.65	0.0	0.04	15.91	0.00	2.249	7.77	0.63	2.5	97.5	0.0	0.23	1.19	0.67	0.84	1.33	3059	407	1	0	1	0	0	logfile
✔	6X13	21987	2022-11-29	2020-05-18	3.66	3.77	—	3.8	0.007	1.04	1.0	0.05	16.27	0.01	2.340	4.80	0.31	6.5	93.5	0.0	-3.73	0.64	0.84	1.86	3.8	0.003	0.66	0.0	0.04	15.85	0.00	2.290	10.07	0.00	5.1	94.9	0.0	1.68	0.43	0.64	0.83	1.50	3136	417	1	0	1	0	0	logfile
✔	6ZRQ	11382	2022-11-29	2020-07-14	3.9	4.06	—	4.2	0.014	1.20	0.0	0.05	12.20	0.00	2.597	20.13	0.00	5.0	95.0	0.0	-4.20	0.64	0.62	3.62	4.2	0.003	0.70	0.0	0.04	12.79	0.00	2.180	20.13	0.00	15.4	84.6	0.0	-5.93	2.13	0.70	0.77	2.95	3816	276	12	0	0	0	1776	logfile
✔	7BX7	30235	2022-11-29	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.79	6.36	2.9	0.004	0.60	0.0	0.04	13.78	0.00	2.166	11.86	1.72	8.5	91.5	0.0	-5.45	1.13	0.41	0.79	6.15	1896	270	6	0	0	0	0	logfile
✔	7KPW	22990	2022-11-29	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.8	0.005	0.86	0.0	0.04	6.91	0.00	2.059	5.41	0.00	14.6	84.8	0.6	-1.66	2.04	0.83	0.83	—	4313	865	1	0	0	0	0	logfile
✔	6XLY	22252	2022-11-29	2020-06-29	3.1	4.00	3.11	3.5	0.006	0.95	0.0	0.05	15.47	0.01	2.336	4.00	0.97	4.3	95.7	0.0	-5.77	0.86	0.77	1.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5111	646	1	0	1	0	0	logfile
✔	7K1V	22630	2022-11-29	2020-09-08	4.6	4.95	—	4.8	0.008	1.12	0.0	0.06	15.77	0.01	2.159	13.77	0.40	11.0	89.0	0.0	-4.04	0.71	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4971	626	1	0	0	0	0	logfile
✔	6ZPG	11338	2022-11-29	2020-07-08	4.6	4.29	—	7.0	0.004	0.99	0.0	0.05	15.64	0.01	2.313	5.51	0.25	5.6	94.4	0.0	-3.85	0.60	0.55	—	6.9	0.003	0.83	0.0	0.04	15.55	0.00	2.211	18.10	0.00	7.2	92.8	0.0	0.34	1.95	0.65	0.63	—	3808	463	1	0	0	0	0	logfile
✔	6WiK	21684	2022-11-29	2020-04-10	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6077	859	3	0	0	0	0	logfile
✔	7KNU	22963	2022-11-29	2020-11-06	3.49	4.38	3.61	4.1	0.003	0.64	0.0	0.04	14.11	0.01	2.141	9.64	0.00	4.0	96.0	0.0	-1.59	0.59	0.76	1.17	4.1	0.003	0.70	0.0	0.04	16.16	0.00	2.174	14.14	0.00	4.0	96.0	0.0	-0.39	0.58	0.59	0.77	0.52	3809	467	3	0	0	0	0	logfile
✔	7KNT	22962	2022-11-29	2020-11-06	3.15	4.00	3.32	3.7	0.004	0.75	0.0	0.05	14.56	0.00	2.116	11.65	0.74	3.6	96.4	0.0	-0.48	0.58	0.75	1.64	3.7	0.003	0.71	0.0	0.04	16.05	0.00	2.229	12.73	0.25	2.7	97.3	0.0	0.57	0.49	0.57	0.75	0.28	3716	455	2	0	0	0	0	logfile
✔	6LZ0	30020	2022-11-29	2020-02-16	3.3	4.24	—	4.2	0.008	1.17	10.0	0.09	15.05	0.01	2.126	17.56	5.25	11.1	88.7	0.2	-4.02	0.46	0.61	1.68	4.2	0.003	0.79	0.0	0.04	16.17	0.01	2.163	9.24	0.31	6.2	93.8	0.0	-0.24	1.27	0.41	0.67	1.61	4006	591	3	0	1	0	0	logfile
✔	7CWo	30485	2022-11-29	2020-08-29	3.9	4.25	—	4.1	0.007	1.04	0.0	0.06	9.37	0.01	2.262	9.56	0.28	8.4	91.6	0.0	-3.72	0.58	0.74	2.31	4.1	0.005	0.78	0.0	0.05	14.28	0.00	2.126	21.79	0.28	8.2	91.8	0.0	-2.11	1.72	0.59	0.75	2.34	3254	422	3	0	0	0	0	logfile
✔	6M49	30074	2022-11-29	2020-03-06	3.7	4.45	—	4.4	0.008	0.85	0.0	0.05	14.32	0.01	2.079	14.80	0.98	7.1	92.6	0.2	-4.00	0.46	0.70	1.15	4.4	0.003	0.84	0.0	0.04	16.18	0.00	2.192	10.57	0.66	2.9	97.1	0.0	1.84	3.61	0.48	0.73	1.18	3098	420	3	0	1	0	0	logfile
✔	6LYY	30019	2022-11-29	2020-02-16	3.2	3.40	—	3.9	0.010	1.16	9.0	0.10	13.41	0.01	2.152	14.72	0.90	8.3	91.7	0.0	-3.75	0.38	0.51	1.45	3.8	0.003	0.73	0.0	0.04	15.49	0.00	2.267	9.94	0.60	4.6	95.4	0.0	0.46	1.24	0.46	0.66	2.02	4104	597	3	0	1	0	0	logfile
✔	6X2Z	22014	2022-11-29	2020-05-21	3.03	3.18	—	3.2	0.005	0.84	0.0	0.05	15.51	0.01	2.131	6.52	0.00	3.6	96.4	0.0	-5.65	0.44	0.86	2.63	3.2	0.003	0.67	0.0	0.04	16.19	0.00	2.185	9.85	0.85	3.1	96.9	0.0	0.73	0.96	0.43	0.86	2.16	3205	420	1	0	3	0	0	logfile

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