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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6o20 | 0607 | 2024-04-11 | 2019-02-22 | 3.3 | 3.73 | — | 3.7 | 0.008 | 1.09 | 1.0 | 0.06 | 15.65 | 0.01 | 2.014 | 8.33 | 0.40 | 8.4 | 91.5 | 0.0 | -5.94 | 0.56 | 0.78 | 2.20 | 3.7 | 0.003 | 0.72 | 0.0 | 0.04 | 17.73 | 0.00 | 2.124 | 10.88 | 2.84 | 5.8 | 94.2 | 0.0 | 0.03 | 0.78 | 0.56 | 0.79 | 1.88 | 20950 | 2624 | 7 | 0 | 4 | 0 | 0 | logfile |
✔ | 7oH6 | 12895 | 2024-04-07 | 2021-05-09 | 3.0 | 3.69 | 3.20 | 3.6 | 0.003 | 1.13 | 0.0 | 0.04 | 12.69 | 0.00 | 1.720 | 4.93 | 1.20 | 4.0 | 96.0 | 0.0 | -2.49 | 0.65 | 0.74 | 2.83 | 3.6 | 0.004 | 0.66 | 0.0 | 0.04 | 14.17 | 0.00 | 1.427 | 8.52 | 2.23 | 3.7 | 96.2 | 0.1 | -0.55 | 1.22 | 0.65 | 0.76 | 2.27 | 11552 | 1414 | 7 | 0 | 10 | 2 | 0 | logfile |
✔ | 6E1o | 8959 | 2024-04-07 | 2018-07-10 | 3.59 | 3.70 | — | 3.7 | 0.008 | 1.21 | 0.0 | 0.06 | 11.66 | 0.01 | 2.219 | 4.62 | 0.78 | 6.9 | 93.1 | 0.0 | -5.85 | 0.66 | 0.83 | 2.30 | 3.6 | 0.002 | 0.66 | 0.0 | 0.04 | 14.75 | 0.00 | 2.248 | 6.40 | 3.62 | 4.3 | 95.7 | 0.0 | -0.41 | 0.89 | 0.67 | 0.83 | 0.94 | 9784 | 1182 | 4 | 0 | 18 | 0 | 0 | logfile |
✔ | 7L31 | 23148 | 2024-04-08 | 2020-12-17 | 3.8 | 3.88 | — | 3.9 | 0.005 | 0.90 | 0.0 | 0.06 | 14.72 | 0.01 | 2.232 | 7.39 | 0.28 | 5.9 | 94.1 | 0.0 | -4.07 | 0.69 | 0.85 | 3.24 | 3.9 | 0.005 | 0.73 | 0.0 | 0.05 | 15.76 | 0.00 | 2.116 | 11.07 | 4.92 | 7.0 | 93.0 | 0.0 | -1.45 | 0.44 | 0.69 | 0.85 | 2.40 | 13596 | 1686 | 10 | 0 | 14 | 0 | 0 | logfile |
✔ | 5ACo | 3121 | 2024-04-11 | 2015-08-17 | 4.36 | 4.52 | — | 4.3 | 0.012 | 1.98 | 3.0 | 0.11 | 17.67 | 0.02 | 1.986 | 10.73 | 0.29 | 9.1 | 88.9 | 1.9 | -2.40 | 0.70 | 0.68 | — | 4.3 | 0.007 | 0.95 | 0.0 | 0.05 | 11.49 | 0.00 | 2.046 | 17.42 | 0.00 | 8.4 | 91.1 | 0.5 | -1.31 | 1.61 | 0.82 | 0.84 | — | 21297 | 2415 | 69 | 0 | 192 | 0 | 0 | logfile |
✔ | 5VA3 | 8652 | 2024-04-09 | 2017-03-24 | 4.0 | 6.91 | — | 6.8 | 0.008 | 1.07 | 0.0 | 0.06 | 12.27 | 0.01 | 1.727 | 9.17 | 1.30 | 4.8 | 94.1 | 1.1 | -3.78 | 0.64 | 0.74 | — | 6.7 | 0.004 | 0.93 | 0.0 | 0.05 | 15.44 | 0.00 | 2.122 | 22.46 | 3.68 | 4.3 | 95.5 | 0.2 | -0.72 | 3.42 | 0.66 | 0.81 | — | 17600 | 2236 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PQo | 20449 | 2024-04-10 | 2019-07-09 | 2.88 | 3.25 | 2.81 | 3.2 | 0.012 | 1.41 | 0.0 | 0.08 | 18.19 | 0.03 | 2.222 | 7.38 | 0.58 | 3.5 | 96.5 | 0.0 | -2.93 | 0.57 | 0.72 | 3.08 | 3.2 | 0.004 | 0.60 | 0.0 | 0.04 | 17.78 | 0.00 | 2.148 | 5.08 | 2.82 | 3.0 | 97.0 | 0.0 | 1.42 | 1.27 | 0.69 | 0.84 | 2.24 | 20312 | 2448 | 12 | 0 | 36 | 0 | 0 | logfile |
✔ | 6WHX | 21679 | 2024-04-11 | 2020-04-08 | 4.09 | 4.50 | — | 4.4 | 0.007 | 0.87 | 0.0 | 0.05 | 14.91 | 0.01 | 2.048 | 18.82 | 0.13 | 19.4 | 80.6 | 0.0 | -5.50 | 0.59 | 0.70 | — | 4.4 | 0.004 | 0.71 | 0.0 | 0.05 | 13.54 | 0.00 | 2.094 | 11.82 | 0.00 | 10.8 | 89.2 | 0.0 | -2.25 | 0.54 | 0.62 | 0.75 | — | 22925 | 3154 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6WHY | 21680 | 2024-04-12 | 2020-04-08 | 4.03 | 4.59 | — | 4.4 | 0.006 | 0.83 | 0.0 | 0.06 | 16.28 | 0.00 | 2.150 | 16.46 | 1.71 | 15.5 | 84.5 | 0.0 | -5.12 | 0.61 | 0.65 | — | 4.4 | 0.003 | 0.68 | 0.0 | 0.04 | 13.33 | 0.00 | 2.202 | 10.20 | 0.09 | 9.8 | 90.2 | 0.0 | -1.86 | 0.54 | 0.68 | 0.75 | — | 22198 | 3098 | 10 | 0 | 8 | 0 | 0 | logfile |
✔ | 6M7J | 9047 | 2024-04-13 | 2018-08-20 | 4.4 | 5.36 | — | 4.4 | 0.008 | 1.07 | 2.0 | 0.05 | 13.78 | 0.01 | 1.543 | 73.63 | 0.22 | 12.3 | 87.5 | 0.2 | -4.19 | 0.92 | 0.87 | — | 4.4 | 0.003 | 0.65 | 0.0 | 0.04 | 14.24 | 0.00 | 1.993 | 14.58 | 0.00 | 5.4 | 94.6 | 0.1 | -0.56 | 0.67 | 0.92 | 0.87 | — | 27183 | 3349 | 10 | 57 | 4 | 0 | 0 | logfile |
✔ | 7UQY | 26702 | 2024-04-07 | 2022-04-20 | 3.0 | 2.33 | 2.95 | 2.1 | 0.003 | 0.59 | 0.0 | 0.04 | 13.64 | 0.00 | 2.197 | 10.04 | 0.00 | 5.0 | 95.0 | 0.0 | -0.18 | 0.76 | 0.70 | 3.53 | 2.0 | 0.004 | 0.67 | 0.0 | 0.05 | 15.56 | 0.00 | 2.072 | 13.74 | 1.92 | 5.0 | 95.0 | 0.0 | -0.38 | 0.42 | 0.76 | 0.76 | 3.23 | 9556 | 1167 | 4 | 1 | 3 | 0 | 0 | logfile |
✔ | 7PUY | 13662 | 2024-04-07 | 2021-10-01 | 3.3 | 3.42 | 2.55 | 3.3 | 0.006 | 0.74 | 0.0 | 0.05 | 17.93 | 0.00 | 2.067 | 13.87 | 1.90 | 3.0 | 97.0 | 0.0 | -0.75 | 0.70 | 0.68 | 1.46 | 3.3 | 0.003 | 0.70 | 0.0 | 0.04 | 15.15 | 0.00 | 2.096 | 13.92 | 1.72 | 3.6 | 96.4 | 0.0 | -0.22 | 0.69 | 0.73 | 0.74 | 1.44 | 10395 | 1224 | 24 | 0 | 42 | 0 | 0 | logfile |
✔ | 6o7U | 0645 | 2024-04-11 | 2019-03-08 | 3.1 | 3.32 | — | 3.3 | 0.006 | 0.98 | 0.0 | 0.05 | 9.82 | 0.01 | 2.294 | 3.39 | 0.09 | 2.3 | 97.7 | 0.0 | -3.98 | 0.65 | 0.85 | 4.64 | 3.3 | 0.005 | 0.81 | 2.0 | 0.04 | 13.73 | 0.00 | 2.008 | 7.64 | 1.93 | 2.3 | 97.7 | 0.0 | 0.91 | 1.16 | 0.64 | 0.86 | 3.60 | 21268 | 2832 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RB0 | 24391 | 2024-04-14 | 2021-07-05 | 2.98 | 3.22 | — | 3.2 | 0.009 | 0.76 | 0.0 | 0.05 | 13.47 | 0.00 | 2.115 | 13.03 | 0.00 | 4.9 | 95.1 | 0.0 | -1.42 | 0.72 | 0.82 | 3.78 | 3.2 | 0.002 | 0.62 | 0.0 | 0.05 | 16.10 | 0.00 | 2.157 | 9.86 | 1.54 | 3.6 | 96.4 | 0.0 | -0.34 | 0.45 | 0.75 | 0.85 | 3.31 | 16350 | 2082 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LML | 0918 | 2024-04-07 | 2019-12-26 | 3.9 | 4.02 | — | 3.9 | 0.006 | 0.96 | 0.0 | 0.06 | 15.40 | 0.01 | 2.260 | 7.25 | 0.51 | 8.8 | 91.2 | 0.0 | -5.53 | 0.69 | 0.80 | 1.70 | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 16.63 | 0.00 | 2.190 | 12.99 | 4.15 | 7.0 | 93.0 | 0.0 | -2.01 | 1.04 | 0.68 | 0.79 | 0.96 | 9438 | 1219 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6D6V | 7821 | 2024-04-09 | 2018-04-22 | 4.8 | 5.14 | — | 4.6 | 0.013 | 1.70 | 1.0 | 0.08 | 21.41 | 0.01 | 1.189 | 25.63 | 0.97 | 15.8 | 83.5 | 0.7 | -4.28 | 0.84 | 0.74 | — | 4.6 | 0.003 | 0.77 | 0.0 | 0.05 | 20.74 | 0.00 | 2.099 | 25.57 | 0.00 | 14.3 | 85.7 | 0.0 | -2.18 | 1.56 | 0.86 | 0.78 | — | 17317 | 1535 | 9 | 178 | 158 | 0 | 0 | logfile |
✔ | 6P47 | 20245 | 2024-04-08 | 2019-05-26 | 3.9 | 4.13 | 3.63 | 4.0 | 0.007 | 1.21 | 2.0 | 0.07 | 17.02 | 0.01 | 2.243 | 11.77 | 3.68 | 8.8 | 90.7 | 0.6 | -5.94 | 0.64 | 0.76 | 1.64 | 4.0 | 0.004 | 0.88 | 0.0 | 0.05 | 17.07 | 0.00 | 2.068 | 19.94 | 3.30 | 9.8 | 90.0 | 0.3 | -2.04 | 0.75 | 0.64 | 0.76 | 1.44 | 11972 | 1450 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5A0Q | 2981 | 2024-04-17 | 2015-04-22 | 3.5 | 3.34 | — | 3.3 | 0.019 | 2.22 | 14.0 | 0.11 | 16.22 | 0.02 | 0.702 | 33.75 | 1.99 | 4.5 | 95.1 | 0.4 | -3.18 | 0.60 | 0.61 | 1.82 | 3.3 | 0.004 | 0.82 | 0.0 | 0.05 | 18.24 | 0.01 | 2.124 | 20.58 | 5.64 | 4.6 | 95.3 | 0.1 | -1.45 | 0.96 | 0.64 | 0.64 | 0.91 | 43448 | 5582 | 34 | 0 | 6 | 0 | 0 | logfile |
✔ | 6PKW | 20368 | 2024-04-12 | 2019-06-30 | 4.5 | 4.77 | — | 4.4 | 0.007 | 0.94 | 0.0 | 0.05 | 9.19 | 0.01 | 2.239 | 4.10 | 0.00 | 5.8 | 94.2 | 0.0 | -3.48 | 0.66 | 0.78 | — | 4.4 | 0.002 | 0.55 | 0.0 | 0.04 | 9.78 | 0.00 | 2.224 | 6.54 | 0.00 | 4.7 | 95.3 | 0.0 | 2.18 | 1.62 | 0.67 | 0.78 | — | 26262 | 4056 | 4 | 0 | 88 | 0 | 0 | logfile |
✔ | 6PQP | 20450 | 2024-04-10 | 2019-07-09 | 3.06 | 3.46 | 3.03 | 3.4 | 0.012 | 1.29 | 0.0 | 0.23 | 21.82 | 0.01 | 2.132 | 8.72 | 0.19 | 4.3 | 95.7 | 0.0 | -3.28 | 0.74 | 0.82 | 3.00 | 3.4 | 0.002 | 0.58 | 0.0 | 0.04 | 17.62 | 0.00 | 2.157 | 6.06 | 1.92 | 2.5 | 97.5 | 0.0 | 1.87 | 2.26 | 0.74 | 0.85 | 2.20 | 20492 | 2460 | 12 | 0 | 36 | 0 | 0 | logfile |