Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8C91	16498	2023-11-14	2023-01-21	4.19	4.74	4.70	4.2	0.001	0.36	0.0	0.03	12.73	0.00	1.896	5.51	0.07	3.8	96.1	0.2	0.39	0.84	0.79	—	4.2	0.005	0.67	0.0	0.04	16.34	0.01	1.963	29.65	0.00	9.5	90.4	0.1	-2.03	0.92	0.86	0.85	—	59110	1860	18	2077	0	0	0	logfile
✔	8HiA	34813	2023-11-14	2022-11-19	4.9	4.49	2.13	9.6	0.001	0.36	0.0	0.05	15.83	0.00	2.251	1.11	2.86	12.1	87.6	0.2	-4.39	0.47	0.07	—	9.3	0.006	0.81	0.0	0.05	13.96	0.00	2.003	41.39	4.76	14.3	85.7	0.0	-7.09	12.61	0.65	0.22	—	7200	460	20	0	0	0	3660	logfile
✔	8FEJ	29029	2023-11-15	2022-12-06	4.64	5.33	4.68	4.6	0.001	0.37	0.0	0.04	13.97	0.00	2.253	6.27	4.30	2.9	96.9	0.2	0.48	0.88	0.69	—	4.5	0.002	0.56	0.0	0.04	12.24	0.00	2.204	9.64	0.00	6.1	93.7	0.2	-0.44	1.31	0.91	0.74	—	10464	1368	3	0	0	0	0	logfile
✔	8D9K	27264	2023-11-13	2022-06-10	3.72	4.58	3.85	4.1	0.001	0.37	0.0	0.03	9.12	0.00	2.270	6.46	0.64	1.9	98.1	0.0	1.53	0.89	0.84	2.42	4.1	0.002	0.48	0.0	0.04	11.57	0.00	2.195	8.61	0.00	2.1	97.9	0.0	0.79	0.56	0.89	0.85	2.25	5708	546	3	65	0	0	0	logfile
✔	7TJ2	25915	2023-11-16	2022-01-14	3.2	3.32	—	3.4	0.002	0.37	0.0	0.04	8.62	0.00	2.196	3.77	1.64	2.4	97.6	0.0	0.18	0.69	0.76	3.52	3.3	0.005	0.55	0.0	0.04	13.57	0.00	2.187	6.25	0.23	3.5	96.5	0.0	-0.10	2.83	0.71	0.82	3.46	17083	2007	8	62	0	0	0	logfile
✔	6X33	22016	2023-11-15	2020-05-21	4.2	4.35	—	4.3	0.001	0.37	0.0	0.03	9.39	0.00	2.304	3.24	0.00	1.9	98.1	0.0	-4.22	0.55	0.69	—	4.3	0.003	0.64	0.0	0.04	11.75	0.00	2.056	8.49	0.06	3.0	97.0	0.0	0.21	0.65	0.57	0.72	—	112372	14796	16	0	1436	0	0	logfile
✔	7TCP	25816	2023-11-16	2021-12-27	3.84	3.97	—	3.9	0.002	0.37	0.0	0.03	9.57	0.00	2.327	4.21	1.26	2.8	97.2	0.0	2.66	0.70	0.81	2.29	3.9	0.003	0.50	0.0	0.04	12.75	0.00	2.113	5.39	0.60	3.3	96.7	0.0	2.51	0.36	0.71	0.83	2.44	14992	1912	12	0	12	0	0	logfile
✔	6NEQ	9358	2023-11-15	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.29	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.004	0.69	0.0	0.04	16.41	0.00	2.052	13.48	0.54	6.0	93.9	0.1	-0.50	2.02	0.85	0.85	1.54	65776	5509	32	952	147	0	0	logfile
✔	7R9E	24324	2023-11-14	2021-06-29	4.0	4.83	—	3.9	0.002	0.37	0.0	0.04	4.45	0.00	2.277	3.11	0.00	9.9	88.7	1.4	-3.58	0.87	0.80	—	3.9	0.002	0.56	0.0	0.04	9.08	0.00	2.177	7.90	0.00	5.0	95.0	0.0	0.09	1.76	0.88	0.82	—	7726	505	1	0	0	0	3938	logfile
✔	6X35	22018	2023-11-14	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.37	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.003	0.64	0.0	0.04	11.49	0.00	2.229	8.53	0.02	3.2	96.8	0.0	1.06	1.69	0.57	0.72	—	111888	14740	16	0	1432	0	0	logfile
✔	7SQV	25396	2023-11-13	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	2.8	0.003	0.47	0.0	0.04	16.30	0.00	2.295	1.36	1.67	1.1	98.9	0.0	1.71	1.99	0.77	0.90	3.84	4471	573	5	0	0	7	0	logfile
✔	8C90	16497	2023-11-15	2023-01-21	3.15	3.51	3.31	3.1	0.002	0.38	0.0	0.03	13.26	0.00	1.866	5.45	0.00	5.1	94.8	0.0	0.48	0.79	0.79	1.77	3.2	0.004	0.56	0.0	0.03	14.77	0.00	2.050	12.64	0.56	6.6	93.3	0.0	-0.69	0.48	0.81	0.84	1.69	64726	2183	22	2219	0	0	0	logfile
✔	7Xo2	33334	2023-11-13	2022-04-30	3.0	2.83	2.60	2.9	0.001	0.38	0.0	0.05	18.12	0.00	2.586	6.10	0.00	5.0	95.0	0.0	-0.89	0.49	0.87	6.67	2.9	0.005	0.60	0.0	0.05	19.10	0.00	2.290	4.76	3.88	7.2	92.8	0.0	-1.69	2.16	0.49	0.88	6.49	2550	372	6	0	0	0	0	logfile
✔	7JSE	22451	2023-11-15	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.50	—	3.9	0.007	1.10	0.0	0.09	14.86	0.00	2.156	11.87	0.00	20.1	79.9	0.0	-3.21	2.77	0.87	0.64	—	13288	3168	24	32	0	0	0	logfile
✔	8E41	27876	2023-11-15	2022-08-17	2.13	2.86	2.57	2.6	0.005	0.38	1.0	0.02	12.74	0.02	1.983	1.89	0.85	5.2	94.8	0.0	0.82	0.73	0.90	5.26	2.6	0.004	0.58	1.0	0.03	13.73	0.01	2.001	3.43	1.48	5.8	94.2	0.1	0.15	0.22	0.73	0.91	5.27	115744	1186	12	3016	1	0	41833	logfile
✔	7R9M	24329	2023-11-14	2021-06-29	4.0	4.58	—	3.9	0.002	0.38	0.0	0.04	4.68	0.00	2.214	3.88	0.00	8.3	90.9	0.8	-4.83	0.85	0.77	—	3.9	0.002	0.54	0.0	0.04	9.14	0.00	2.110	9.06	0.00	2.6	97.4	0.0	-0.08	1.73	0.86	0.79	—	7727	505	1	0	0	0	3939	logfile
✔	8C92	16499	2023-11-13	2023-01-21	3.79	4.24	4.02	3.8	0.002	0.38	0.0	0.03	13.24	0.00	1.872	5.69	0.00	4.5	95.4	0.1	0.46	0.83	0.79	1.60	3.8	0.005	0.61	0.0	0.03	15.31	0.00	2.005	18.89	0.29	8.0	92.0	0.0	-1.25	0.57	0.85	0.84	1.72	53489	1700	17	1873	0	0	0	logfile
✘	7VF9	31948	2023-11-18	2021-09-10	4.04	4.13	—	4.1	0.001	0.38	0.0	0.04	9.65	0.00	2.176	3.71	0.05	1.5	98.5	0.0	-4.44	0.74	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24247	3425	7	0	3	0	0	logfile
✔	8C98	16505	2023-11-20	2023-01-21	3.66	4.27	3.73	3.6	0.002	0.38	0.0	0.03	13.48	0.00	1.923	5.79	0.00	4.7	95.3	0.0	1.35	0.79	0.72	1.74	3.6	0.002	0.52	0.0	0.03	15.03	0.00	2.131	12.24	0.23	6.1	93.9	0.0	-0.56	0.57	0.79	0.82	1.51	30284	1080	12	1018	0	0	0	logfile
✔	7R9o	24330	2023-11-14	2021-06-29	4.0	4.66	—	4.0	0.002	0.38	0.0	0.04	4.49	0.00	2.252	2.85	0.25	10.5	88.7	0.8	-4.93	0.83	0.71	—	4.0	0.003	0.60	0.0	0.04	11.04	0.00	1.937	11.65	0.00	4.2	95.8	0.0	-0.51	3.45	0.88	0.83	—	7726	505	1	0	0	0	3938	logfile

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