Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8E41	27876	2023-08-13	2022-08-17	2.13	2.86	2.57	2.6	0.005	0.38	1.0	0.02	12.72	0.02	1.983	1.89	0.85	5.2	94.8	0.0	0.82	0.73	0.90	5.26	2.6	0.005	0.58	1.0	0.04	13.77	0.01	1.985	3.39	1.17	5.5	94.4	0.1	0.23	0.24	0.73	0.91	5.26	115744	1186	12	3016	1	0	41833	logfile
✔	7R9o	24330	2023-08-10	2021-06-29	4.0	4.66	—	4.0	0.002	0.38	0.0	0.04	4.49	0.00	2.252	2.85	0.25	10.5	88.7	0.8	-4.93	0.83	0.71	—	4.0	0.003	0.60	0.0	0.04	11.04	0.00	1.937	11.65	0.00	4.2	95.8	0.0	-0.51	3.45	0.88	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	7JSE	22451	2023-08-13	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.50	—	3.9	0.007	1.10	0.0	0.09	14.86	0.00	2.156	11.87	0.00	20.1	79.9	0.0	-3.21	2.77	0.87	0.64	—	13288	3168	24	32	0	0	0	logfile
✔	8C98	16505	2023-08-21	2023-01-21	3.66	4.27	3.73	3.6	0.002	0.38	0.0	0.03	13.48	0.00	1.923	5.79	0.00	4.7	95.3	0.0	1.35	0.79	0.72	1.74	3.5	0.004	0.58	0.0	0.03	15.23	0.00	2.085	15.12	0.68	8.3	91.7	0.0	-0.73	0.56	0.79	0.83	1.30	30284	1080	12	1018	0	0	0	logfile
✘	7VF9	31948	2023-08-18	2021-09-10	4.04	4.13	—	4.1	0.001	0.38	0.0	0.04	9.65	0.00	2.176	3.71	0.05	1.5	98.5	0.0	-4.44	0.74	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24247	3425	7	0	3	0	0	logfile
✔	5ZBo	6746	2023-08-21	2018-02-12	4.12	4.69	—	4.8	0.001	0.38	0.0	0.04	15.92	0.00	2.148	1.93	0.49	11.1	86.2	2.7	-4.88	0.71	0.60	—	4.1	0.003	0.79	1.0	0.04	13.14	0.00	2.131	20.40	0.00	5.8	94.2	0.0	-2.51	2.97	0.74	0.80	—	89100	10860	60	0	0	0	0	logfile
✔	7oNL	12997	2023-08-13	2021-05-25	3.9	3.35	3.58	3.6	0.002	0.38	0.0	0.04	9.17	0.00	2.180	5.51	0.41	1.5	98.5	0.0	2.97	0.64	0.80	2.02	3.6	0.003	0.63	0.0	0.04	13.87	0.00	2.200	9.71	0.74	1.4	98.6	0.0	2.16	0.57	0.64	0.81	1.09	13923	1827	7	0	0	0	0	logfile
✔	8C90	16497	2023-08-12	2023-01-21	3.15	3.51	3.31	3.1	0.002	0.38	0.0	0.03	13.26	0.00	1.866	5.45	0.00	5.1	94.8	0.0	0.48	0.79	0.79	1.77	3.2	0.004	0.58	0.0	0.03	14.79	0.00	2.035	12.84	0.39	7.4	92.6	0.0	-0.80	0.49	0.81	0.84	1.79	64726	2183	22	2219	0	0	0	logfile
✔	6XLH	22244	2023-08-13	2020-06-28	2.83	2.93	—	2.9	0.001	0.39	0.0	0.04	7.54	0.00	2.093	5.99	0.13	1.5	98.5	0.0	-3.84	0.73	0.80	3.26	2.9	0.004	0.62	0.0	0.04	16.39	0.00	1.913	9.37	1.67	3.1	96.9	0.0	-0.57	0.88	0.77	0.88	3.86	13608	1675	6	0	6	0	0	logfile
✔	6KRD	0756	2023-08-11	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.80	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.003	0.67	0.0	0.04	11.93	0.00	2.014	12.31	0.01	3.2	96.7	0.1	0.08	1.78	0.62	0.58	—	61005	8006	16	0	0	0	0	logfile
✔	8C99	16506	2023-08-19	2023-01-21	3.29	3.69	3.33	3.3	0.002	0.39	0.0	0.03	13.03	0.00	1.957	5.35	0.00	4.7	95.3	0.0	0.97	0.79	0.79	2.26	3.3	0.005	0.60	0.0	0.03	14.88	0.00	2.025	12.60	0.50	8.0	92.0	0.0	-0.89	0.57	0.81	0.84	2.06	27988	987	11	945	0	0	0	logfile
✔	7Xo0	33332	2023-08-09	2022-04-30	3.0	2.48	1.85	3.1	0.001	0.39	0.0	0.05	16.62	0.00	2.280	4.76	0.00	5.0	95.0	0.0	-2.66	0.47	0.87	7.11	3.1	0.003	0.43	0.0	0.05	17.01	0.00	2.241	5.71	1.94	5.8	94.2	0.0	-2.86	0.38	0.47	0.87	6.51	2550	372	6	0	0	0	0	logfile
✔	7Y5H	33620	2023-08-09	2022-06-17	3.72	4.13	3.68	4.1	0.002	0.39	0.0	0.04	12.51	0.00	2.030	3.76	0.00	0.5	99.5	0.0	0.06	0.63	0.77	1.35	4.1	0.003	0.59	0.0	0.04	15.31	0.00	2.037	6.90	0.57	0.9	99.1	0.0	1.70	1.10	0.66	0.80	1.37	4704	600	4	0	4	0	0	logfile
✔	6KRE	0757	2023-08-11	2019-08-21	4.45	4.34	—	4.4	0.001	0.39	0.0	0.04	7.11	0.00	2.244	6.04	0.03	4.1	95.8	0.1	-3.50	0.61	0.56	—	4.4	0.003	0.68	0.0	0.04	11.97	0.00	2.090	13.71	0.03	3.5	96.4	0.1	0.20	1.80	0.67	0.64	—	60321	7922	16	0	0	0	0	logfile
✘	7XL3	33271	2023-08-18	2022-04-21	3.13	3.20	—	3.2	0.002	0.39	0.0	0.04	12.03	0.00	2.263	4.77	1.08	2.9	97.1	0.0	-4.73	0.73	0.79	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25700	3480	8	0	3	0	0	logfile
✔	6KS7	0759	2023-08-12	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.72	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.003	0.70	0.0	0.04	12.04	0.00	2.131	14.80	0.03	3.3	96.6	0.1	-0.06	1.85	0.74	0.67	—	62022	8131	16	0	0	0	0	logfile
✔	7ZPL	14857	2023-08-16	2022-04-27	3.12	3.95	3.13	3.2	0.002	0.39	0.0	0.04	14.05	0.00	2.178	5.65	0.00	2.2	97.8	0.0	0.80	0.92	0.85	2.46	3.2	0.003	0.58	0.0	0.04	15.28	0.00	2.144	9.22	0.19	3.0	97.0	0.0	1.02	4.21	0.93	0.89	2.34	19919	2422	9	24	1	0	0	logfile
✔	8C97	16504	2023-08-23	2023-01-21	4.07	4.81	4.16	4.0	0.002	0.39	0.0	0.03	13.88	0.00	1.904	5.95	0.00	4.6	95.2	0.2	0.72	0.80	0.75	—	4.0	0.004	0.62	0.0	0.03	16.08	0.00	1.791	23.08	0.00	8.3	91.5	0.2	-1.49	0.75	0.80	0.83	—	36163	1077	12	1292	0	0	0	logfile
✔	8E45	27880	2023-08-13	2022-08-17	2.3	2.93	2.71	2.8	0.005	0.39	0.0	0.03	12.39	0.02	1.957	1.35	0.74	4.5	95.4	0.2	0.33	0.71	0.90	5.24	2.8	0.005	0.62	0.0	0.04	13.83	0.01	1.895	2.05	1.38	5.8	93.9	0.3	-0.43	0.59	0.69	0.90	5.62	115749	1179	11	3015	1	0	41831	logfile
✔	7MVY	24058	2023-08-19	2021-05-15	2.39	3.24	1.97	3.1	0.002	0.39	0.0	0.03	6.61	0.00	2.209	3.28	0.00	0.7	99.3	0.0	-0.54	0.72	0.64	0.92	3.0	0.004	0.62	0.0	0.04	14.21	0.00	1.966	12.50	1.86	4.0	96.0	0.0	1.26	1.65	0.76	0.75	2.15	26555	1694	2	0	0	0	13337	logfile

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