Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7EW4	31347	2021-12-01	2021-05-24	3.2	3.38	—	3.4	0.002	0.49	0.0	0.14	13.98	0.00	2.237	7.77	0.00	2.0	98.0	0.0	1.05	0.67	0.74	2.41	3.4	0.011	1.16	1.0	0.04	15.44	0.01	2.009	11.72	0.10	3.0	97.0	0.0	0.56	0.43	0.68	0.78	2.40	8929	1145	6	0	3	0	0	logfile
✔	7CMU	30410	2021-12-01	2020-07-29	3.0	3.27	—	3.3	0.005	0.49	0.0	0.04	12.33	0.00	1.996	4.07	0.00	1.7	98.3	0.0	2.96	0.61	0.74	2.42	3.3	0.005	0.70	0.0	0.04	16.18	0.01	2.046	8.88	2.81	3.1	96.9	0.0	1.55	1.18	0.66	0.81	2.42	8771	1123	5	0	1	0	0	logfile
✔	7EW3	31346	2021-12-01	2021-05-24	3.1	3.34	—	3.4	0.004	0.49	0.0	0.04	14.15	0.00	2.274	4.63	0.00	1.4	98.6	0.0	1.36	0.66	0.76	2.23	3.4	0.003	0.55	0.0	0.04	15.66	0.00	2.098	4.68	0.20	1.9	98.1	0.0	1.26	1.36	0.64	0.77	2.46	9072	1149	6	0	5	0	0	logfile
✔	7oDF	12827	2021-12-01	2021-04-29	2.66	3.20	—	3.1	0.003	0.49	0.0	0.04	16.48	0.00	1.952	6.12	0.00	1.4	98.6	0.0	1.47	0.75	0.83	3.58	3.1	0.003	0.52	0.0	0.04	17.77	0.00	2.010	8.11	2.74	2.1	97.9	0.0	1.74	0.89	0.70	0.80	3.35	6847	703	7	78	2	5	0	logfile
✔	6WJ3	21687	2021-12-01	2020-04-11	3.9	4.46	4.05	4.2	0.009	0.50	0.0	0.04	12.83	0.00	2.210	8.22	0.00	4.7	95.2	0.1	-2.80	0.85	0.76	0.95	4.2	0.009	1.04	0.0	0.04	15.41	0.01	1.836	15.75	0.11	6.0	94.0	0.0	-0.67	1.72	0.86	0.78	1.14	8912	1168	10	1	1	0	0	logfile
✔	7L2Z	23146	2021-12-02	2020-12-17	3.4	3.78	—	3.7	0.002	0.50	1.0	0.05	12.49	0.00	1.866	2.68	0.63	3.6	96.4	0.0	-2.91	0.74	0.75	1.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	59631	3866	6	0	0	0	29676	logfile
✔	7E7S	31003	2021-12-01	2021-02-27	3.3	3.32	3.27	3.4	0.003	0.50	0.0	0.04	14.41	0.00	2.166	8.26	0.00	2.6	97.4	0.0	-0.13	0.68	0.82	1.44	3.4	0.003	0.58	0.0	0.04	15.87	0.00	2.214	8.57	0.23	3.1	96.9	0.0	1.43	1.28	0.67	0.82	0.57	7884	1020	1	0	2	0	0	logfile
✔	6UUS	20901	2021-12-01	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.39	3.27	2.8	97.2	0.0	-2.25	0.57	0.72	3.22	2.3	0.002	0.57	0.0	0.04	17.80	0.00	2.176	9.30	2.25	2.6	97.4	0.0	0.57	1.00	0.63	0.76	3.20	9308	1190	7	0	0	0	0	logfile
✔	7RPo	24618	2021-12-02	2021-08-03	4.16	2.77	—	1.8	0.003	0.50	0.0	0.04	16.86	0.00	1.759	6.97	1.64	8.5	91.5	0.0	-2.01	0.74	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10602	1179	9	62	5	0	0	logfile
✔	7CMV	30411	2021-12-01	2020-07-29	2.7	2.91	—	2.9	0.008	0.50	0.0	0.04	12.72	0.00	2.032	3.78	0.00	1.5	98.5	0.0	2.95	0.61	0.78	2.85	2.9	0.003	0.54	0.0	0.04	15.56	0.00	2.140	5.67	1.87	2.0	98.0	0.0	1.94	0.47	0.64	0.84	3.28	8775	1123	5	0	1	0	0	logfile
✔	6Wi9	21683	2021-12-01	2020-04-09	4.3	4.37	4.24	4.3	0.002	0.50	0.0	0.04	12.85	0.00	2.214	5.37	0.00	4.2	95.8	0.0	-3.72	0.77	0.78	—	4.3	0.004	0.73	0.0	0.04	13.93	0.00	2.087	14.09	0.00	6.6	93.4	0.0	-0.58	0.80	0.78	0.78	—	8550	1108	6	0	0	0	0	logfile
✔	6WB1	21584	2021-12-01	2020-03-26	4.7	4.87	—	4.6	0.002	0.50	0.0	0.04	12.49	0.00	2.204	7.21	0.55	4.5	95.4	0.1	-4.82	0.86	0.80	—	4.6	0.003	0.61	0.0	0.04	13.12	0.00	2.159	10.71	0.00	4.3	95.7	0.0	-0.90	0.73	0.88	0.84	—	8235	944	4	75	0	0	0	logfile
✔	6TKo	10515	2021-12-01	2019-11-28	3.3	3.40	3.22	3.6	0.005	0.51	0.0	0.04	12.62	0.00	2.079	2.87	0.23	1.0	99.0	0.0	-2.07	0.71	0.73	2.06	3.5	0.005	0.75	0.0	0.04	15.16	0.01	2.016	15.87	0.47	2.6	97.4	0.0	0.05	1.73	0.77	0.81	2.52	8085	1052	5	0	1	0	0	logfile
✔	6V5V	21054	2021-12-01	2019-12-04	3.8	4.01	—	3.9	0.003	0.51	0.0	0.04	13.58	0.00	2.212	6.07	0.00	4.6	95.4	0.0	-2.04	0.52	0.82	2.06	3.9	0.002	0.54	0.0	0.04	14.64	0.00	2.192	7.93	0.30	3.2	96.8	0.0	0.28	0.57	0.53	0.82	1.76	2979	369	1	1	0	0	0	logfile
✔	7KAT	22783	2021-12-02	2020-10-01	4.4	5.04	4.41	4.5	0.002	0.51	0.0	0.04	11.32	0.00	2.185	6.85	0.00	1.9	98.1	0.0	-0.63	0.65	0.83	—	4.5	0.002	0.57	0.0	0.04	12.07	0.00	2.070	9.26	0.00	2.1	97.9	0.0	2.26	1.32	0.65	0.85	—	10431	1340	6	0	0	0	0	logfile
✔	6V69	21060	2021-12-01	2019-12-04	4.2	4.28	—	4.2	0.003	0.51	0.0	0.04	13.16	0.00	2.204	6.51	0.22	3.5	96.5	0.0	-4.11	0.55	0.83	—	4.2	0.003	0.65	0.0	0.04	13.47	0.00	2.166	8.30	0.11	3.6	96.4	0.0	0.39	1.48	0.55	0.83	—	8353	1027	2	0	0	0	0	logfile
✔	7KCL	22812	2021-12-02	2020-10-06	3.14	3.19	—	3.2	0.002	0.51	0.0	0.04	15.80	0.00	2.009	10.47	0.00	4.7	95.3	0.0	-0.08	0.76	0.84	2.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10057	1249	5	0	6	0	0	logfile
✔	7P54	13194	2021-12-01	2021-07-14	3.3	3.29	3.21	3.5	0.003	0.51	0.0	0.04	13.48	0.00	2.206	6.98	0.00	1.7	98.3	0.0	4.08	0.53	0.76	1.07	3.5	0.003	0.49	0.0	0.05	15.89	0.00	2.239	6.82	0.15	2.0	98.0	0.0	4.49	1.36	0.55	0.78	1.13	6248	794	8	0	12	0	0	logfile
✔	7CTT	30469	2021-12-01	2020-08-20	3.2	3.41	—	3.4	0.009	0.51	0.0	0.04	12.54	0.00	2.123	10.28	0.45	4.7	95.3	0.0	-2.80	0.71	0.76	2.65	3.4	0.003	0.61	0.0	0.04	14.51	0.00	2.179	12.78	0.79	4.4	95.5	0.1	-0.64	0.44	0.70	0.77	2.43	8912	1031	7	34	4	0	0	logfile
✔	7KAL	22774	2021-12-02	2020-10-01	4.0	4.57	4.10	4.2	0.002	0.51	0.0	0.04	11.87	0.00	2.262	5.74	0.00	2.6	97.3	0.1	-0.72	0.63	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10789	1429	7	0	0	0	0	logfile

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