Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6W18	21503	2021-08-08	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.01	0.00	2.196	4.67	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.2	0.002	0.68	0.0	0.04	12.68	0.00	2.168	8.57	0.09	6.3	93.7	0.0	-1.40	1.30	0.76	0.70	—	13151	1837	9	0	3	0	0	logfile
✔	5GW4	9540	2021-08-09	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.48	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	4.8	0.003	0.74	0.0	0.04	11.82	0.00	2.046	17.06	0.03	4.2	95.8	0.0	0.28	2.59	0.74	0.60	—	64544	8446	16	0	0	0	0	logfile
✔	6QXF	4668	2021-08-10	2019-03-07	3.6	4.31	—	3.6	0.002	0.42	0.0	0.04	11.08	0.00	2.203	6.94	0.73	2.2	97.7	0.1	-1.19	0.90	0.86	1.38	3.6	0.003	0.61	0.0	0.04	14.28	0.00	2.111	11.22	0.13	2.3	97.6	0.1	1.77	2.80	0.89	0.86	1.34	34693	4088	30	50	8	0	0	logfile
✔	7A4H	11633	2021-08-14	2020-08-19	4.5	4.54	4.44	4.5	0.002	0.42	0.0	0.04	10.28	0.00	2.251	6.06	2.76	1.8	98.2	0.0	3.99	0.69	0.73	—	4.5	0.004	0.73	0.0	0.05	13.59	0.00	2.053	14.60	0.04	2.8	97.2	0.0	1.45	1.92	0.73	0.80	—	204396	26904	180	0	0	0	0	logfile
✔	7EBF	31053	2021-08-08	2021-03-09	2.63	2.31	—	2.5	0.002	0.42	0.0	0.04	11.01	0.00	2.294	5.76	2.11	2.0	98.0	0.0	1.61	0.65	0.78	2.64	2.3	0.003	0.52	0.0	0.04	16.03	0.00	2.270	7.92	1.96	2.6	97.4	0.0	1.14	0.58	0.66	0.80	3.12	13052	1640	4	0	0	0	0	logfile
✔	7B0Y	11972	2021-08-11	2020-11-23	3.6	3.87	3.41	3.7	0.002	0.42	0.0	0.04	15.19	0.00	1.954	4.27	0.02	2.1	97.9	0.0	-2.96	0.75	0.78	2.05	3.7	0.003	0.62	0.0	0.04	17.34	0.00	2.124	11.16	0.14	3.5	96.5	0.0	-0.21	1.27	0.76	0.78	1.65	43792	4745	31	274	9	0	0	logfile
✔	6PM5	20388	2021-08-08	2019-07-01	3.1	3.38	—	3.4	0.001	0.42	0.0	0.06	6.80	0.00	2.275	5.03	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	3.4	0.003	0.65	0.0	0.05	14.12	0.00	2.287	5.75	0.47	3.3	96.7	0.0	-0.20	1.12	0.57	0.85	3.95	13975	1735	15	0	15	0	0	logfile
✔	7JLX	22383	2021-08-07	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.83	0.0	0.04	7.84	0.00	2.303	8.24	0.00	17.7	82.3	0.0	-3.14	2.43	0.49	0.54	—	3288	664	4	0	0	0	0	logfile
✔	7BL6	12219	2021-08-12	2021-01-18	4.0	7.11	—	4.0	0.002	0.42	0.0	0.03	13.17	0.00	2.117	10.91	0.07	4.7	95.3	0.1	-0.28	0.92	0.83	—	4.0	0.003	0.57	0.0	0.03	16.31	0.00	2.060	24.04	0.14	6.6	93.4	0.1	-1.22	3.12	0.93	0.86	—	92769	3600	42	3016	5	27	0	logfile
✔	5WVK	6694	2021-08-13	2016-12-25	4.2	4.73	—	4.3	0.002	0.43	0.0	0.04	7.38	0.00	2.151	7.46	0.01	6.6	93.3	0.2	-3.70	0.84	0.75	—	4.3	0.003	0.73	0.0	0.04	12.07	0.00	2.053	19.27	0.01	5.2	94.6	0.2	-0.77	2.38	0.88	0.80	—	105261	13392	47	0	0	0	0	logfile
✔	6PLQ	20372	2021-08-08	2019-07-01	3.4	4.30	—	4.3	0.001	0.43	0.0	0.04	7.21	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.57	0.36	0.62	3.8	0.004	0.87	0.0	0.05	14.71	0.01	2.123	13.23	0.32	4.3	95.7	0.0	-1.02	2.46	0.76	0.84	2.17	14240	1730	15	0	20	0	0	logfile
✔	6VX4	21429	2021-08-07	2020-02-21	3.12	3.57	3.17	3.4	0.002	0.43	0.0	0.04	12.96	0.00	2.173	11.33	0.38	8.1	91.9	0.0	-4.73	0.80	0.73	1.78	3.3	0.006	0.86	0.0	0.05	16.27	0.01	2.079	28.00	0.38	6.9	93.1	0.0	-1.52	1.51	0.84	0.83	2.21	9813	1265	9	0	0	0	0	logfile
✔	7JGD	22323	2021-08-09	2020-07-19	3.38	3.68	—	3.6	0.002	0.43	0.0	0.05	12.94	0.00	2.123	11.41	0.00	3.9	96.1	0.0	1.18	0.61	0.66	2.22	3.6	0.013	1.02	1.0	0.05	14.89	0.01	1.985	15.51	0.00	6.9	93.1	0.0	0.45	0.50	0.65	0.72	1.81	20292	1435	1	0	0	0	8505	logfile
✔	6HD7	0202	2021-08-12	2018-08-17	3.4	3.54	—	3.3	0.002	0.43	0.0	0.05	14.93	0.00	0.345	24.87	0.08	11.1	87.1	1.9	-3.26	0.66	0.65	0.74	3.3	0.007	0.78	0.0	0.04	17.70	0.01	2.016	18.29	0.81	7.4	92.3	0.4	-1.08	1.59	0.76	0.87	1.74	141153	7514	52	3767	234	0	0	logfile
✔	7oBQ	12799	2021-08-08	2021-04-23	3.9	4.22	—	3.9	0.002	0.43	0.0	0.03	12.89	0.00	2.106	9.19	2.63	2.7	97.3	0.0	1.55	0.76	0.79	0.82	3.9	0.011	1.10	0.0	0.04	15.62	0.01	1.854	19.51	0.29	3.6	96.4	0.1	0.37	0.68	0.77	0.81	1.16	16668	1642	11	165	39	0	0	logfile
✔	6PLP	20371	2021-08-08	2019-07-01	3.3	3.51	—	3.8	0.001	0.43	0.0	0.04	7.21	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.44	0.72	3.32	3.6	0.003	0.63	0.0	0.04	13.63	0.01	2.085	10.07	0.39	3.0	97.0	0.0	-0.84	1.80	0.50	0.79	2.65	14240	1730	15	0	20	0	0	logfile
✔	6XLB	22238	2021-08-08	2020-06-28	3.8	4.01	—	3.8	0.002	0.43	0.0	0.04	13.65	0.00	2.235	7.29	0.00	2.0	98.0	0.0	-2.43	0.82	0.77	1.14	3.8	0.003	0.72	0.0	0.05	16.24	0.00	2.144	18.77	0.24	4.0	96.0	0.0	-0.26	1.41	0.84	0.81	1.46	11180	1380	4	0	0	0	0	logfile
✔	6PCS	20306	2021-08-10	2019-06-18	2.8	3.17	—	3.0	0.006	0.43	0.0	0.02	12.69	0.02	1.658	3.30	1.31	5.7	94.1	0.1	-3.87	0.66	0.86	3.98	3.0	0.007	0.74	0.0	0.04	15.14	0.01	2.102	8.49	4.19	6.9	92.8	0.3	-1.56	1.54	0.67	0.88	3.44	72169	967	8	3015	1	0	0	logfile
✘	6NUD	0516	2021-08-09	2019-01-31	3.5	3.80	—	3.7	0.002	0.43	0.0	0.03	11.76	0.00	2.290	4.84	0.29	15.0	83.5	1.5	-5.22	0.53	0.46	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20831	2420	13	68	1	0	0	logfile
✔	6TFJ	10492	2021-08-11	2019-11-14	2.9	3.01	2.90	3.0	0.002	0.43	0.0	0.04	9.89	0.00	2.013	6.70	0.11	8.4	91.6	0.0	-2.53	0.70	0.73	2.51	3.0	0.004	0.63	0.0	0.04	15.16	0.00	1.944	10.57	1.46	7.9	92.0	0.1	-0.95	1.35	0.72	0.77	2.15	48340	3058	4	0	0	0	24098	logfile

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