Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PGS	13394	2022-05-14	2021-08-15	3.4	3.61	3.34	3.4	0.002	0.40	0.0	0.03	10.77	0.00	1.972	3.59	0.66	1.2	98.8	0.0	-0.33	0.80	0.79	2.03	3.4	0.004	0.57	0.0	0.04	13.25	0.00	1.886	6.43	0.16	4.0	95.9	0.0	1.36	0.74	0.82	0.81	1.49	67202	4210	2	0	1	0	33807	logfile
✔	7LH3	23335	2022-05-13	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.81	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.003	0.65	0.0	0.04	10.89	0.00	2.261	11.45	0.00	4.2	95.8	0.0	1.60	1.12	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile
✔	7RZR	24775	2022-05-12	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.003	0.35	0.0	0.03	15.28	0.00	2.325	4.84	0.35	0.0	100.0	0.0	6.56	0.32	0.81	0.82	3.42	2448	324	6	0	0	0	0	logfile
✔	7VXC	32175	2022-05-18	2021-11-12	3.9	4.21	—	4.1	0.002	0.40	0.0	0.04	7.11	0.00	2.022	12.45	0.00	4.2	95.8	0.0	-1.96	0.63	0.62	0.87	4.1	0.008	0.85	1.0	0.04	14.01	0.00	1.727	37.75	0.30	5.6	94.3	0.1	-0.77	1.70	0.67	0.73	1.15	46264	3801	4	0	0	0	16332	logfile
✔	6J2X	9772	2022-05-12	2019-01-03	3.8	3.99	—	3.9	0.002	0.40	0.0	0.04	7.12	0.00	2.220	6.73	0.00	5.8	94.1	0.1	-3.52	0.80	0.70	0.49	3.9	0.005	0.82	1.0	0.05	15.39	0.01	2.081	20.84	0.70	5.3	94.6	0.1	-0.82	1.89	0.84	0.78	0.91	106176	13501	47	0	0	0	0	logfile
✔	6J2Q	9771	2022-05-12	2019-01-02	3.8	3.95	—	3.9	0.002	0.40	0.0	0.04	7.17	0.00	2.202	6.66	0.00	5.5	94.4	0.1	-3.50	0.77	0.68	0.88	3.9	0.004	0.80	0.0	0.04	15.39	0.00	2.012	16.29	0.52	3.9	95.9	0.1	-0.67	2.27	0.82	0.76	1.04	106311	13518	47	0	0	0	0	logfile
✔	7EoS	31229	2022-05-15	2021-04-22	3.9	4.43	—	3.9	0.001	0.40	0.0	0.04	9.12	0.00	2.254	6.57	1.89	4.1	95.8	0.1	0.47	0.88	0.78	1.32	4.0	0.004	0.71	0.0	0.04	12.91	0.00	2.114	15.89	0.27	6.9	93.1	0.1	-0.55	2.28	0.91	0.83	1.42	24600	3106	8	0	18	0	0	logfile
✔	7QNB	14073	2022-05-13	2021-12-20	3.1	3.62	—	3.3	0.002	0.40	0.0	0.04	9.33	0.00	2.241	5.57	0.56	1.7	98.3	0.0	1.87	0.75	0.84	3.27	3.3	0.003	0.65	0.0	0.04	12.91	0.00	2.134	8.56	0.38	2.4	97.6	0.0	1.24	2.14	0.78	0.89	3.66	14793	1767	15	0	24	0	0	logfile
✔	7oDS	12846	2022-05-12	2021-04-30	3.1	3.32	—	3.1	0.002	0.40	0.0	0.03	11.15	0.02	2.009	5.15	0.51	1.2	98.8	0.0	0.91	0.78	0.76	2.42	3.1	0.006	0.77	1.0	0.04	14.75	0.01	1.478	11.86	0.36	3.3	96.7	0.0	0.33	1.69	0.79	0.79	2.24	108339	9371	67	1487	132	0	0	logfile
✔	6HD5	0201	2022-05-13	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.52	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.73	0.0	0.04	11.96	0.00	2.138	15.29	0.00	5.4	94.5	0.1	-0.09	2.01	0.45	0.55	—	9707	1234	3	0	0	0	0	logfile
✔	7RZQ	24774	2022-05-12	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.30	0.0	0.03	15.08	0.00	2.337	5.30	0.36	0.0	100.0	0.0	5.90	0.30	0.81	0.82	1.87	2421	322	6	0	0	0	0	logfile
✔	7MFG	23816	2022-05-14	2021-04-09	3.87	4.47	3.92	4.0	0.002	0.40	0.0	0.04	9.39	0.00	1.993	5.51	0.22	4.2	95.8	0.0	0.42	0.86	0.84	2.35	4.1	0.003	0.68	0.0	0.04	12.94	0.00	2.046	11.10	0.27	5.4	94.6	0.0	-0.23	1.25	0.87	0.86	1.97	17013	2121	18	0	30	0	0	logfile
✔	7VXA	32173	2022-05-18	2021-11-12	3.9	4.16	—	4.1	0.002	0.41	0.0	0.04	7.17	0.00	2.017	13.02	0.00	4.3	95.7	0.0	-1.90	0.60	0.60	0.95	4.0	0.005	0.74	0.0	0.04	13.79	0.00	1.906	34.19	0.15	4.8	95.2	0.1	-0.61	1.69	0.65	0.72	1.08	46176	3795	4	0	0	0	16288	logfile
✘	7FiJ	31599	2022-05-12	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3061	561	1	0	0	0	0	logfile
✘	7PiM	13442	2022-05-13	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	46.18	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11844	1412	12	0	8	0	524	logfile
✔	6X34	22017	2022-05-17	2020-05-21	4.7	6.14	4.99	4.8	0.001	0.41	0.0	0.03	9.38	0.00	2.258	3.87	0.61	1.6	98.4	0.0	-2.99	0.74	0.66	—	4.8	0.003	0.65	0.0	0.04	9.64	0.00	2.095	12.85	0.00	4.0	96.0	0.0	0.40	0.92	0.80	0.80	—	97888	13956	12	0	1320	0	0	logfile
✔	6WCB	21605	2022-05-13	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.003	0.49	0.0	0.04	15.56	0.00	2.085	4.05	0.16	1.7	98.3	0.0	3.29	1.29	0.55	0.79	2.44	11647	734	6	0	7	40	5904	logfile
✔	7EU8	31309	2022-05-14	2021-05-16	4.07	4.11	—	3.6	0.002	0.41	0.0	0.04	8.07	0.00	2.206	3.16	3.51	2.0	97.9	0.1	1.10	0.75	0.61	—	3.4	0.008	0.95	1.0	0.05	8.88	0.00	1.886	10.58	0.00	5.3	94.5	0.2	-0.12	1.36	0.79	0.69	—	18670	3010	8	0	8	0	0	logfile
✔	6W18	21503	2022-05-13	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.01	0.00	2.196	4.79	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.1	0.007	0.90	0.0	0.05	13.19	0.01	2.028	17.62	0.09	12.6	87.4	0.0	-2.30	1.61	0.78	0.73	—	13151	1837	9	0	3	0	0	logfile
✔	7TB3	25791	2022-05-18	2021-12-21	2.57	3.30	—	3.1	0.002	0.41	0.0	0.03	9.42	0.00	2.212	4.57	1.06	9.5	90.1	0.4	0.76	0.74	0.74	1.78	3.0	0.003	0.64	0.0	0.04	15.25	0.00	2.145	9.47	1.65	3.0	97.0	0.0	3.19	0.98	0.73	0.84	2.00	48000	5832	24	0	0	0	0	logfile

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