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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7oDT | 12847 | 2023-07-04 | 2021-04-30 | 3.1 | 3.31 | — | 3.1 | 0.003 | 0.41 | 0.0 | 0.03 | 11.01 | 0.01 | 1.988 | 5.28 | 0.53 | 1.2 | 98.8 | 0.0 | 1.05 | 0.77 | 0.79 | 2.84 | 3.1 | 0.003 | 0.58 | 0.0 | 0.04 | 14.67 | 0.00 | 1.891 | 10.64 | 0.27 | 2.6 | 97.4 | 0.0 | 0.69 | 0.71 | 0.78 | 0.83 | 2.53 | 110473 | 9585 | 71 | 1526 | 110 | 0 | 0 | logfile |
✔ | 7PiM | 13442 | 2023-07-06 | 2021-08-20 | 4.6 | 5.02 | 5.18 | 4.6 | 0.002 | 0.41 | 0.0 | 0.03 | 8.31 | 0.00 | 1.900 | 45.64 | 0.67 | 2.0 | 98.0 | 0.0 | 2.23 | 0.81 | 0.76 | — | 4.6 | 0.002 | 0.46 | 0.0 | 0.03 | 12.01 | 0.00 | 1.854 | 66.59 | 0.00 | 3.2 | 96.8 | 0.0 | 0.47 | 1.02 | 0.82 | 0.76 | — | 11844 | 1412 | 12 | 0 | 8 | 0 | 524 | logfile |
✔ | 7oDR | 12845 | 2023-07-03 | 2021-04-30 | 2.9 | 3.11 | — | 3.0 | 0.002 | 0.41 | 0.0 | 0.03 | 11.20 | 0.02 | 1.963 | 4.98 | 0.44 | 1.1 | 98.9 | 0.0 | 0.96 | 0.74 | 0.80 | 3.31 | 3.0 | 0.003 | 0.70 | 0.0 | 0.04 | 15.27 | 0.01 | 1.900 | 10.20 | 2.30 | 2.0 | 98.0 | 0.0 | 0.89 | 1.26 | 0.76 | 0.84 | 2.70 | 107464 | 9244 | 68 | 1489 | 135 | 0 | 0 | logfile |
✔ | 8oiQ | 16896 | 2023-07-06 | 2023-03-23 | 3.5 | 3.76 | 3.59 | 3.7 | 0.003 | 0.41 | 0.0 | 0.03 | 11.81 | 0.01 | 1.362 | 5.13 | 0.63 | 2.7 | 97.3 | 0.0 | 0.46 | 0.64 | 0.82 | 2.68 | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 15.29 | 0.00 | 1.795 | 8.16 | 0.32 | 3.6 | 96.4 | 0.0 | 0.33 | 0.65 | 0.64 | 0.83 | 2.23 | 112981 | 9379 | 77 | 1718 | 238 | 0 | 0 | logfile |
✔ | 7TD2 | 25821 | 2023-07-07 | 2021-12-30 | 3.11 | 3.30 | — | 3.2 | 0.002 | 0.41 | 0.0 | 0.04 | 11.84 | 0.00 | 2.175 | 2.14 | 0.42 | 1.1 | 98.9 | 0.0 | -0.58 | 0.53 | 0.76 | 2.85 | 3.2 | 0.004 | 0.51 | 0.0 | 0.04 | 14.67 | 0.00 | 1.952 | 5.24 | 0.14 | 3.5 | 96.5 | 0.0 | 1.43 | 1.23 | 0.54 | 0.79 | 3.17 | 13528 | 904 | 5 | 0 | 1 | 0 | 6632 | logfile |
✔ | 8AA4 | 15293 | 2023-07-07 | 2022-06-29 | 3.1 | 3.54 | 2.92 | 3.2 | 0.001 | 0.41 | 0.0 | 0.04 | 7.46 | 0.00 | 2.240 | 3.52 | 0.00 | 2.7 | 97.2 | 0.1 | 0.39 | 0.73 | 0.88 | 4.17 | 3.2 | 0.004 | 0.59 | 0.0 | 0.04 | 10.31 | 0.00 | 2.136 | 4.08 | 0.00 | 4.6 | 95.3 | 0.1 | -0.44 | 0.94 | 0.73 | 0.90 | 4.26 | 13616 | 1742 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8C94 | 16501 | 2023-07-04 | 2023-01-21 | 3.8 | 4.29 | 4.13 | 3.8 | 0.002 | 0.41 | 0.0 | 0.03 | 13.06 | 0.00 | 1.610 | 7.44 | 0.00 | 5.3 | 94.7 | 0.0 | 0.23 | 0.79 | 0.79 | 1.17 | 3.9 | 0.004 | 0.62 | 0.0 | 0.03 | 15.06 | 0.00 | 2.013 | 19.37 | 0.89 | 8.9 | 91.0 | 0.1 | -1.43 | 0.64 | 0.81 | 0.83 | 1.11 | 54560 | 2070 | 21 | 1787 | 0 | 0 | 0 | logfile |
✔ | 7oJN | 12956 | 2023-07-08 | 2021-05-16 | 2.92 | 3.27 | 2.89 | 2.9 | 0.004 | 0.41 | 0.0 | 0.04 | 9.23 | 0.00 | 1.859 | 3.51 | 0.93 | 4.7 | 95.2 | 0.1 | 0.93 | 0.88 | 0.83 | 3.05 | 3.0 | 0.003 | 0.48 | 0.0 | 0.04 | 12.90 | 0.00 | 2.095 | 5.50 | 1.53 | 5.0 | 95.0 | 0.0 | 0.73 | 2.62 | 0.91 | 0.90 | 3.01 | 16991 | 2010 | 6 | 39 | 7 | 0 | 0 | logfile |
✔ | 7WoG | 32651 | 2023-07-03 | 2022-01-21 | 4.06 | 2.95 | — | 2.0 | 0.001 | 0.41 | 0.0 | 0.04 | 8.09 | 0.00 | 2.293 | 10.22 | 3.78 | 8.0 | 92.0 | 0.0 | -3.98 | 0.51 | 0.51 | — | 2.2 | 0.003 | 0.71 | 0.0 | 0.04 | 10.94 | 0.00 | 2.020 | 21.35 | 0.00 | 13.1 | 86.9 | 0.0 | -2.59 | 1.02 | 0.54 | 0.55 | — | 3362 | 433 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UVT | 26816 | 2023-07-06 | 2022-05-02 | 3.9 | 4.17 | 4.00 | 4.1 | 0.001 | 0.41 | 0.0 | 0.02 | 16.13 | 0.00 | 1.897 | 6.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.76 | 0.74 | — | 4.1 | 0.006 | 0.70 | 0.0 | 0.04 | 17.94 | 0.01 | 1.892 | 21.35 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.48 | 0.77 | 0.76 | — | 12409 | 0 | 1 | 386 | 0 | 0 | 4149 | logfile |
✔ | 7WKD | 32565 | 2023-07-08 | 2022-01-09 | 3.01 | 2.29 | — | 3.1 | 0.007 | 0.41 | 1.0 | 0.04 | 7.82 | 0.00 | 1.978 | 6.84 | 0.31 | 1.4 | 98.6 | 0.0 | -1.70 | 0.68 | 0.66 | 1.77 | 3.0 | 0.017 | 0.79 | 0.0 | 0.04 | 14.70 | 0.01 | 1.891 | 15.45 | 0.42 | 3.8 | 96.2 | 0.0 | 0.29 | 1.05 | 0.72 | 0.75 | 2.56 | 17515 | 1120 | 6 | 0 | 0 | 0 | 8712 | logfile |
✔ | 7FiJ | 31599 | 2023-07-03 | 2021-07-31 | 3.8 | 2.32 | — | 1.8 | 0.001 | 0.41 | 0.0 | 0.04 | 8.02 | 0.00 | 2.344 | 3.95 | 0.00 | 4.1 | 95.9 | 0.0 | 1.10 | 0.58 | 0.50 | 3.05 | 1.6 | 0.003 | 0.71 | 0.0 | 0.04 | 10.87 | 0.00 | 2.234 | 8.95 | 1.25 | 10.6 | 89.4 | 0.0 | -0.78 | 0.63 | 0.60 | 0.54 | 2.95 | 3061 | 561 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DK1 | 27480 | 2023-07-09 | 2022-07-01 | 2.95 | 3.68 | 3.03 | 3.4 | 0.002 | 0.42 | 0.0 | 0.04 | 9.97 | 0.00 | 2.294 | 2.83 | 1.44 | 3.3 | 96.7 | 0.0 | 2.11 | 0.85 | 0.90 | 2.51 | 3.4 | 0.002 | 0.51 | 0.0 | 0.04 | 12.85 | 0.00 | 2.260 | 3.98 | 1.49 | 3.6 | 96.4 | 0.0 | 2.59 | 0.62 | 0.85 | 0.90 | 2.22 | 19500 | 2446 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U1E | 26299 | 2023-07-09 | 2022-02-21 | 4.52 | 4.53 | — | 4.5 | 0.001 | 0.42 | 0.0 | 0.04 | 11.18 | 0.00 | 2.240 | 5.36 | 2.68 | 3.6 | 96.4 | 0.0 | -1.42 | 0.60 | 0.73 | — | 4.4 | 0.005 | 0.72 | 0.0 | 0.05 | 11.96 | 0.00 | 2.129 | 15.55 | 0.00 | 6.0 | 94.0 | 0.0 | 0.02 | 0.62 | 0.61 | 0.76 | — | 18366 | 2741 | 9 | 0 | 6 | 0 | 0 | logfile |
✔ | 7JLX | 22383 | 2023-07-03 | 2020-07-30 | 4.6 | 3.86 | — | 3.7 | 0.001 | 0.42 | 0.0 | 0.04 | 3.80 | 0.00 | 2.240 | 2.96 | 0.00 | 6.7 | 93.3 | 0.0 | 1.23 | 0.54 | 0.51 | — | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 7.17 | 0.00 | 2.306 | 8.03 | 0.00 | 17.7 | 82.3 | 0.0 | -2.25 | 2.42 | 0.48 | 0.53 | — | 3288 | 664 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T4N | 25681 | 2023-07-04 | 2021-12-10 | 2.35 | 2.66 | 2.38 | 2.5 | 0.002 | 0.42 | 0.0 | 0.04 | 16.22 | 0.00 | 2.207 | 4.39 | 1.25 | 1.0 | 99.0 | 0.0 | 0.87 | 0.63 | 0.85 | 3.82 | 2.5 | 0.003 | 0.49 | 0.0 | 0.04 | 16.48 | 0.00 | 2.284 | 5.93 | 1.53 | 1.0 | 99.0 | 0.0 | 1.61 | 0.24 | 0.66 | 0.87 | 3.71 | 6476 | 803 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GS2 | 34218 | 2023-07-08 | 2022-09-04 | 2.84 | 3.09 | 2.94 | 3.1 | 0.002 | 0.42 | 0.0 | 0.04 | 10.20 | 0.00 | 1.579 | 4.49 | 0.30 | 1.2 | 98.8 | 0.0 | 1.18 | 0.74 | 0.89 | 4.67 | 3.1 | 0.002 | 0.48 | 0.0 | 0.04 | 15.09 | 0.00 | 2.185 | 6.70 | 1.56 | 1.7 | 98.3 | 0.0 | 1.43 | 1.32 | 0.74 | 0.90 | 4.14 | 16935 | 1916 | 7 | 64 | 4 | 0 | 0 | logfile |
✔ | 7oZN | 13129 | 2023-07-04 | 2021-06-28 | 3.5 | 3.79 | 3.49 | 3.7 | 0.002 | 0.42 | 0.0 | 0.04 | 14.10 | 0.00 | 2.073 | 4.61 | 0.00 | 2.0 | 98.0 | 0.0 | 1.13 | 0.77 | 0.72 | 1.17 | 3.7 | 0.004 | 0.69 | 0.0 | 0.05 | 16.69 | 0.00 | 2.069 | 15.15 | 0.51 | 3.5 | 96.5 | 0.0 | -0.01 | 0.84 | 0.80 | 0.78 | 1.48 | 54330 | 6774 | 32 | 0 | 10 | 0 | 0 | logfile |
✔ | 7PXA | 13695 | 2023-07-19 | 2021-10-08 | 2.8 | 2.56 | — | 2.8 | 0.002 | 0.42 | 0.0 | 0.04 | 9.39 | 0.00 | 2.147 | 3.67 | 1.14 | 1.5 | 98.5 | 0.0 | 2.60 | 0.76 | 0.84 | 2.86 | 2.8 | 0.003 | 0.58 | 0.0 | 0.04 | 15.33 | 0.00 | 2.086 | 5.80 | 2.47 | 2.1 | 97.9 | 0.0 | 2.29 | 1.46 | 0.77 | 0.87 | 2.75 | 46614 | 6187 | 35 | 0 | 0 | 0 | 0 | logfile |
✔ | 7B0Y | 11972 | 2023-07-18 | 2020-11-23 | 3.6 | 3.87 | 3.41 | 3.7 | 0.002 | 0.42 | 0.0 | 0.04 | 15.19 | 0.00 | 1.954 | 4.30 | 0.02 | 2.1 | 97.9 | 0.0 | -2.96 | 0.75 | 0.78 | 2.05 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 17.17 | 0.00 | 2.033 | 10.43 | 0.29 | 3.5 | 96.5 | 0.0 | 0.03 | 1.23 | 0.75 | 0.78 | 1.72 | 43792 | 4745 | 31 | 274 | 9 | 0 | 0 | logfile |