Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7EBF	31053	2023-02-20	2021-03-09	2.63	2.31	—	2.5	0.002	0.42	0.0	0.04	11.01	0.00	2.294	5.76	2.11	2.0	98.0	0.0	1.61	0.65	0.78	2.64	2.3	0.003	0.52	0.0	0.04	15.90	0.00	2.270	8.68	2.56	2.9	97.1	0.0	1.11	0.55	0.67	0.81	2.90	13052	1640	4	0	0	0	0	logfile
✘	6PM5	20388	2023-02-21	2019-07-01	3.1	3.38	—	3.4	0.001	0.42	0.0	0.06	6.80	0.00	2.275	4.99	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13975	1735	15	0	15	0	0	logfile
✔	7QNA	14072	2023-02-21	2021-12-20	3.0	3.58	—	3.3	0.002	0.42	0.0	0.04	9.01	0.00	2.271	4.69	0.76	1.2	98.8	0.0	1.88	0.76	0.86	3.66	3.3	0.003	0.67	0.0	0.04	13.54	0.00	2.185	9.10	1.45	2.1	97.9	0.0	1.22	2.13	0.77	0.89	4.09	14777	1763	16	0	29	0	0	logfile
✘	5GW4	9540	2023-02-24	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	7WU9	32824	2023-02-18	2022-02-07	3.375	3.51	3.21	3.4	0.002	0.42	0.0	0.04	13.28	0.00	2.137	6.26	0.00	3.0	97.0	0.0	1.21	0.71	0.82	3.04	3.4	0.003	0.62	0.0	0.04	15.22	0.00	2.261	8.25	0.43	3.0	97.0	0.0	1.17	0.82	0.68	0.83	2.14	7369	1030	5	0	0	0	0	logfile
✔	7WoA	32646	2023-02-28	2022-01-21	3.25	2.98	—	3.2	0.002	0.42	0.0	0.04	8.91	0.00	2.229	6.55	4.23	3.8	96.2	0.0	-3.46	0.86	0.78	2.52	3.2	0.004	0.66	0.0	0.05	13.68	0.00	2.139	10.17	0.40	7.5	92.5	0.0	-1.83	0.85	0.89	0.85	2.85	31952	4060	10	0	39	0	0	logfile
✔	7U1E	26299	2023-02-22	2022-02-21	4.52	4.53	—	4.5	0.001	0.42	0.0	0.04	11.18	0.00	2.240	5.30	2.68	3.6	96.4	0.0	-1.42	0.60	0.73	—	4.4	0.004	0.71	0.0	0.05	11.83	0.00	2.127	14.33	0.07	5.5	94.5	0.0	0.08	0.59	0.61	0.76	—	18366	2741	9	0	6	0	0	logfile
✔	7LZE	23605	2023-02-18	2021-03-09	3.23	3.26	3.28	3.6	0.002	0.42	0.0	0.04	13.80	0.00	2.222	3.40	0.11	8.4	91.6	0.0	-0.70	0.76	0.82	3.47	3.5	0.005	0.60	0.0	0.05	14.92	0.00	2.119	3.08	0.23	8.2	91.8	0.0	-0.94	1.12	0.77	0.85	2.71	7842	1011	9	0	9	0	0	logfile
✔	8DK1	27480	2023-02-23	2022-07-01	2.95	3.68	3.03	3.4	0.002	0.42	0.0	0.04	9.97	0.00	2.294	2.83	1.44	3.3	96.7	0.0	2.11	0.85	0.90	2.51	3.4	0.002	0.51	0.0	0.04	12.85	0.00	2.260	3.98	1.49	3.6	96.4	0.0	2.59	0.62	0.85	0.90	2.22	19500	2446	8	0	0	0	0	logfile
✔	7EoU	31231	2023-02-25	2021-04-22	4.3	4.50	—	4.2	0.002	0.43	0.0	0.04	8.92	0.00	2.243	9.12	1.92	3.9	96.0	0.1	0.78	0.86	0.73	—	4.2	0.002	0.60	0.0	0.04	11.17	0.00	2.074	13.71	0.00	5.3	94.6	0.1	-0.18	1.64	0.89	0.79	—	24593	3084	8	0	19	0	0	logfile
✔	6VX4	21429	2023-02-19	2020-02-21	3.12	3.57	3.17	3.4	0.002	0.43	0.0	0.04	12.96	0.00	2.173	11.38	0.38	8.1	91.9	0.0	-4.73	0.80	0.73	1.78	3.3	0.004	0.80	0.0	0.05	15.92	0.00	2.105	22.34	0.38	6.3	93.7	0.0	-1.35	1.49	0.84	0.83	2.39	9813	1265	9	0	0	0	0	logfile
✔	7UNM	26627	2023-02-20	2022-04-11	2.61	3.48	2.66	3.3	0.002	0.43	0.0	0.04	11.23	0.00	2.087	3.44	0.00	0.5	99.5	0.0	3.34	0.67	0.82	2.41	3.3	0.004	0.53	0.0	0.04	14.40	0.00	1.941	4.47	0.48	2.1	97.9	0.0	4.10	0.81	0.56	0.79	1.79	11694	736	6	0	5	55	5920	logfile
✔	7JGD	22323	2023-02-23	2020-07-19	3.38	3.68	—	3.6	0.002	0.43	0.0	0.05	12.94	0.00	2.123	11.45	0.00	3.9	96.1	0.0	1.18	0.61	0.66	2.22	3.6	0.003	0.53	0.0	0.05	14.82	0.00	2.054	14.21	0.08	7.3	92.7	0.0	0.43	0.52	0.63	0.71	1.77	20292	1435	1	0	0	0	8505	logfile
✔	7WQW	32714	2023-02-17	2022-01-26	3.2	3.57	—	3.4	0.002	0.43	0.0	0.04	9.94	0.00	2.272	8.99	4.47	6.7	93.3	0.0	-4.30	0.77	0.75	2.23	3.5	0.003	0.67	0.0	0.04	14.94	0.00	2.210	15.15	0.24	10.6	89.4	0.0	-2.73	2.30	0.79	0.80	2.20	3983	496	4	0	9	0	0	logfile
✔	6NUD	0516	2023-02-23	2019-01-31	3.5	3.80	—	3.7	0.002	0.43	0.0	0.03	11.76	0.00	2.290	4.84	0.29	15.0	83.5	1.5	-5.22	0.53	0.46	0.65	3.7	0.004	0.82	0.0	0.04	16.71	0.00	2.146	15.03	0.24	10.1	89.9	0.0	-2.41	2.02	0.73	0.76	1.77	20831	2420	13	68	1	0	0	logfile
✔	7XM1	33289	2023-02-23	2022-04-24	3.96	3.41	3.91	4.0	0.002	0.43	0.0	0.04	15.16	0.00	2.503	2.22	0.00	3.3	96.7	0.0	2.33	0.73	0.81	1.85	3.9	0.003	0.56	0.0	0.04	18.87	0.00	2.214	4.30	0.31	3.3	96.7	0.0	2.60	0.65	0.74	0.83	1.49	60240	7380	101	0	60	0	0	logfile
✔	7Y5G	33619	2023-02-17	2022-06-17	3.85	4.19	3.81	4.2	0.002	0.43	0.0	0.04	12.74	0.00	2.084	2.19	0.00	0.7	99.3	0.0	-0.05	0.63	0.72	1.21	4.1	0.002	0.53	0.0	0.04	15.35	0.00	2.030	5.10	0.38	1.0	99.0	0.0	1.53	0.65	0.65	0.75	0.28	4736	604	4	0	6	0	0	logfile
✔	6XLB	22238	2023-02-20	2020-06-28	3.8	4.01	—	3.8	0.002	0.43	0.0	0.04	13.65	0.00	2.235	7.33	0.00	2.0	98.0	0.0	-2.43	0.82	0.77	1.14	3.8	0.003	0.70	0.0	0.04	16.05	0.00	2.137	17.34	0.48	3.2	96.8	0.0	-0.32	0.89	0.84	0.81	1.48	11180	1380	4	0	0	0	0	logfile
✔	7TD1	25820	2023-02-20	2021-12-30	3.08	3.31	—	3.3	0.003	0.43	0.0	0.04	11.99	0.00	2.168	2.74	0.28	1.9	98.1	0.0	-0.56	0.52	0.74	3.38	3.3	0.005	0.54	0.0	0.04	14.69	0.00	1.897	8.06	0.00	4.1	95.9	0.0	0.97	1.25	0.53	0.78	3.55	13492	906	5	0	1	0	6593	logfile
✔	8A05	15048	2023-02-16	2022-05-26	3.4	3.47	3.11	3.5	0.002	0.43	0.0	0.05	12.67	0.00	2.328	2.02	0.00	2.2	97.8	0.0	0.42	0.37	0.84	2.71	3.5	0.003	0.47	0.0	0.05	14.61	0.00	2.266	4.03	0.00	2.2	97.8	0.0	0.40	1.25	0.36	0.85	2.71	764	91	2	0	5	0	0	logfile

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