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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7EBF | 31053 | 2023-02-20 | 2021-03-09 | 2.63 | 2.31 | — | 2.5 | 0.002 | 0.42 | 0.0 | 0.04 | 11.01 | 0.00 | 2.294 | 5.76 | 2.11 | 2.0 | 98.0 | 0.0 | 1.61 | 0.65 | 0.78 | 2.64 | 2.3 | 0.003 | 0.52 | 0.0 | 0.04 | 15.90 | 0.00 | 2.270 | 8.68 | 2.56 | 2.9 | 97.1 | 0.0 | 1.11 | 0.55 | 0.67 | 0.81 | 2.90 | 13052 | 1640 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PM5 | 20388 | 2023-02-21 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.001 | 0.42 | 0.0 | 0.06 | 6.80 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 7QNA | 14072 | 2023-02-21 | 2021-12-20 | 3.0 | 3.58 | — | 3.3 | 0.002 | 0.42 | 0.0 | 0.04 | 9.01 | 0.00 | 2.271 | 4.69 | 0.76 | 1.2 | 98.8 | 0.0 | 1.88 | 0.76 | 0.86 | 3.66 | 3.3 | 0.003 | 0.67 | 0.0 | 0.04 | 13.54 | 0.00 | 2.185 | 9.10 | 1.45 | 2.1 | 97.9 | 0.0 | 1.22 | 2.13 | 0.77 | 0.89 | 4.09 | 14777 | 1763 | 16 | 0 | 29 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2023-02-24 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WU9 | 32824 | 2023-02-18 | 2022-02-07 | 3.375 | 3.51 | 3.21 | 3.4 | 0.002 | 0.42 | 0.0 | 0.04 | 13.28 | 0.00 | 2.137 | 6.26 | 0.00 | 3.0 | 97.0 | 0.0 | 1.21 | 0.71 | 0.82 | 3.04 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 15.22 | 0.00 | 2.261 | 8.25 | 0.43 | 3.0 | 97.0 | 0.0 | 1.17 | 0.82 | 0.68 | 0.83 | 2.14 | 7369 | 1030 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WoA | 32646 | 2023-02-28 | 2022-01-21 | 3.25 | 2.98 | — | 3.2 | 0.002 | 0.42 | 0.0 | 0.04 | 8.91 | 0.00 | 2.229 | 6.55 | 4.23 | 3.8 | 96.2 | 0.0 | -3.46 | 0.86 | 0.78 | 2.52 | 3.2 | 0.004 | 0.66 | 0.0 | 0.05 | 13.68 | 0.00 | 2.139 | 10.17 | 0.40 | 7.5 | 92.5 | 0.0 | -1.83 | 0.85 | 0.89 | 0.85 | 2.85 | 31952 | 4060 | 10 | 0 | 39 | 0 | 0 | logfile |
✔ | 7U1E | 26299 | 2023-02-22 | 2022-02-21 | 4.52 | 4.53 | — | 4.5 | 0.001 | 0.42 | 0.0 | 0.04 | 11.18 | 0.00 | 2.240 | 5.30 | 2.68 | 3.6 | 96.4 | 0.0 | -1.42 | 0.60 | 0.73 | — | 4.4 | 0.004 | 0.71 | 0.0 | 0.05 | 11.83 | 0.00 | 2.127 | 14.33 | 0.07 | 5.5 | 94.5 | 0.0 | 0.08 | 0.59 | 0.61 | 0.76 | — | 18366 | 2741 | 9 | 0 | 6 | 0 | 0 | logfile |
✔ | 7LZE | 23605 | 2023-02-18 | 2021-03-09 | 3.23 | 3.26 | 3.28 | 3.6 | 0.002 | 0.42 | 0.0 | 0.04 | 13.80 | 0.00 | 2.222 | 3.40 | 0.11 | 8.4 | 91.6 | 0.0 | -0.70 | 0.76 | 0.82 | 3.47 | 3.5 | 0.005 | 0.60 | 0.0 | 0.05 | 14.92 | 0.00 | 2.119 | 3.08 | 0.23 | 8.2 | 91.8 | 0.0 | -0.94 | 1.12 | 0.77 | 0.85 | 2.71 | 7842 | 1011 | 9 | 0 | 9 | 0 | 0 | logfile |
✔ | 8DK1 | 27480 | 2023-02-23 | 2022-07-01 | 2.95 | 3.68 | 3.03 | 3.4 | 0.002 | 0.42 | 0.0 | 0.04 | 9.97 | 0.00 | 2.294 | 2.83 | 1.44 | 3.3 | 96.7 | 0.0 | 2.11 | 0.85 | 0.90 | 2.51 | 3.4 | 0.002 | 0.51 | 0.0 | 0.04 | 12.85 | 0.00 | 2.260 | 3.98 | 1.49 | 3.6 | 96.4 | 0.0 | 2.59 | 0.62 | 0.85 | 0.90 | 2.22 | 19500 | 2446 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EoU | 31231 | 2023-02-25 | 2021-04-22 | 4.3 | 4.50 | — | 4.2 | 0.002 | 0.43 | 0.0 | 0.04 | 8.92 | 0.00 | 2.243 | 9.12 | 1.92 | 3.9 | 96.0 | 0.1 | 0.78 | 0.86 | 0.73 | — | 4.2 | 0.002 | 0.60 | 0.0 | 0.04 | 11.17 | 0.00 | 2.074 | 13.71 | 0.00 | 5.3 | 94.6 | 0.1 | -0.18 | 1.64 | 0.89 | 0.79 | — | 24593 | 3084 | 8 | 0 | 19 | 0 | 0 | logfile |
✔ | 6VX4 | 21429 | 2023-02-19 | 2020-02-21 | 3.12 | 3.57 | 3.17 | 3.4 | 0.002 | 0.43 | 0.0 | 0.04 | 12.96 | 0.00 | 2.173 | 11.38 | 0.38 | 8.1 | 91.9 | 0.0 | -4.73 | 0.80 | 0.73 | 1.78 | 3.3 | 0.004 | 0.80 | 0.0 | 0.05 | 15.92 | 0.00 | 2.105 | 22.34 | 0.38 | 6.3 | 93.7 | 0.0 | -1.35 | 1.49 | 0.84 | 0.83 | 2.39 | 9813 | 1265 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UNM | 26627 | 2023-02-20 | 2022-04-11 | 2.61 | 3.48 | 2.66 | 3.3 | 0.002 | 0.43 | 0.0 | 0.04 | 11.23 | 0.00 | 2.087 | 3.44 | 0.00 | 0.5 | 99.5 | 0.0 | 3.34 | 0.67 | 0.82 | 2.41 | 3.3 | 0.004 | 0.53 | 0.0 | 0.04 | 14.40 | 0.00 | 1.941 | 4.47 | 0.48 | 2.1 | 97.9 | 0.0 | 4.10 | 0.81 | 0.56 | 0.79 | 1.79 | 11694 | 736 | 6 | 0 | 5 | 55 | 5920 | logfile |
✔ | 7JGD | 22323 | 2023-02-23 | 2020-07-19 | 3.38 | 3.68 | — | 3.6 | 0.002 | 0.43 | 0.0 | 0.05 | 12.94 | 0.00 | 2.123 | 11.45 | 0.00 | 3.9 | 96.1 | 0.0 | 1.18 | 0.61 | 0.66 | 2.22 | 3.6 | 0.003 | 0.53 | 0.0 | 0.05 | 14.82 | 0.00 | 2.054 | 14.21 | 0.08 | 7.3 | 92.7 | 0.0 | 0.43 | 0.52 | 0.63 | 0.71 | 1.77 | 20292 | 1435 | 1 | 0 | 0 | 0 | 8505 | logfile |
✔ | 7WQW | 32714 | 2023-02-17 | 2022-01-26 | 3.2 | 3.57 | — | 3.4 | 0.002 | 0.43 | 0.0 | 0.04 | 9.94 | 0.00 | 2.272 | 8.99 | 4.47 | 6.7 | 93.3 | 0.0 | -4.30 | 0.77 | 0.75 | 2.23 | 3.5 | 0.003 | 0.67 | 0.0 | 0.04 | 14.94 | 0.00 | 2.210 | 15.15 | 0.24 | 10.6 | 89.4 | 0.0 | -2.73 | 2.30 | 0.79 | 0.80 | 2.20 | 3983 | 496 | 4 | 0 | 9 | 0 | 0 | logfile |
✔ | 6NUD | 0516 | 2023-02-23 | 2019-01-31 | 3.5 | 3.80 | — | 3.7 | 0.002 | 0.43 | 0.0 | 0.03 | 11.76 | 0.00 | 2.290 | 4.84 | 0.29 | 15.0 | 83.5 | 1.5 | -5.22 | 0.53 | 0.46 | 0.65 | 3.7 | 0.004 | 0.82 | 0.0 | 0.04 | 16.71 | 0.00 | 2.146 | 15.03 | 0.24 | 10.1 | 89.9 | 0.0 | -2.41 | 2.02 | 0.73 | 0.76 | 1.77 | 20831 | 2420 | 13 | 68 | 1 | 0 | 0 | logfile |
✔ | 7XM1 | 33289 | 2023-02-23 | 2022-04-24 | 3.96 | 3.41 | 3.91 | 4.0 | 0.002 | 0.43 | 0.0 | 0.04 | 15.16 | 0.00 | 2.503 | 2.22 | 0.00 | 3.3 | 96.7 | 0.0 | 2.33 | 0.73 | 0.81 | 1.85 | 3.9 | 0.003 | 0.56 | 0.0 | 0.04 | 18.87 | 0.00 | 2.214 | 4.30 | 0.31 | 3.3 | 96.7 | 0.0 | 2.60 | 0.65 | 0.74 | 0.83 | 1.49 | 60240 | 7380 | 101 | 0 | 60 | 0 | 0 | logfile |
✔ | 7Y5G | 33619 | 2023-02-17 | 2022-06-17 | 3.85 | 4.19 | 3.81 | 4.2 | 0.002 | 0.43 | 0.0 | 0.04 | 12.74 | 0.00 | 2.084 | 2.19 | 0.00 | 0.7 | 99.3 | 0.0 | -0.05 | 0.63 | 0.72 | 1.21 | 4.1 | 0.002 | 0.53 | 0.0 | 0.04 | 15.35 | 0.00 | 2.030 | 5.10 | 0.38 | 1.0 | 99.0 | 0.0 | 1.53 | 0.65 | 0.65 | 0.75 | 0.28 | 4736 | 604 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 6XLB | 22238 | 2023-02-20 | 2020-06-28 | 3.8 | 4.01 | — | 3.8 | 0.002 | 0.43 | 0.0 | 0.04 | 13.65 | 0.00 | 2.235 | 7.33 | 0.00 | 2.0 | 98.0 | 0.0 | -2.43 | 0.82 | 0.77 | 1.14 | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 16.05 | 0.00 | 2.137 | 17.34 | 0.48 | 3.2 | 96.8 | 0.0 | -0.32 | 0.89 | 0.84 | 0.81 | 1.48 | 11180 | 1380 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TD1 | 25820 | 2023-02-20 | 2021-12-30 | 3.08 | 3.31 | — | 3.3 | 0.003 | 0.43 | 0.0 | 0.04 | 11.99 | 0.00 | 2.168 | 2.74 | 0.28 | 1.9 | 98.1 | 0.0 | -0.56 | 0.52 | 0.74 | 3.38 | 3.3 | 0.005 | 0.54 | 0.0 | 0.04 | 14.69 | 0.00 | 1.897 | 8.06 | 0.00 | 4.1 | 95.9 | 0.0 | 0.97 | 1.25 | 0.53 | 0.78 | 3.55 | 13492 | 906 | 5 | 0 | 1 | 0 | 6593 | logfile |
✔ | 8A05 | 15048 | 2023-02-16 | 2022-05-26 | 3.4 | 3.47 | 3.11 | 3.5 | 0.002 | 0.43 | 0.0 | 0.05 | 12.67 | 0.00 | 2.328 | 2.02 | 0.00 | 2.2 | 97.8 | 0.0 | 0.42 | 0.37 | 0.84 | 2.71 | 3.5 | 0.003 | 0.47 | 0.0 | 0.05 | 14.61 | 0.00 | 2.266 | 4.03 | 0.00 | 2.2 | 97.8 | 0.0 | 0.40 | 1.25 | 0.36 | 0.85 | 2.71 | 764 | 91 | 2 | 0 | 5 | 0 | 0 | logfile |