Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6KS7	0759	2022-04-05	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.72	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.009	0.91	0.0	0.05	12.10	0.00	1.014	21.86	0.03	3.5	96.4	0.1	-0.25	1.82	0.74	0.68	—	62022	8131	16	0	0	0	0	logfile
✔	6NEQ	9358	2022-04-05	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.27	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.004	0.68	0.0	0.04	16.24	0.01	2.099	13.00	0.35	5.3	94.6	0.1	-0.32	1.93	0.84	0.84	1.44	65776	5509	32	952	147	0	0	logfile
✔	6KRE	0757	2022-04-05	2019-08-21	4.45	4.34	—	4.4	0.001	0.39	0.0	0.04	7.11	0.00	2.244	6.04	0.03	4.1	95.8	0.1	-3.50	0.61	0.56	—	4.4	0.004	0.75	1.0	0.04	12.02	0.00	2.101	12.63	0.05	3.2	96.8	0.1	0.24	1.77	0.65	0.62	—	60321	7922	16	0	0	0	0	logfile
✘	5GW4	9540	2022-04-05	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	6MWQ	9277	2022-04-06	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.004	0.75	0.0	0.04	13.37	0.00	2.114	9.31	2.04	4.9	94.9	0.2	-1.32	1.34	0.78	0.86	1.93	22072	2873	8	0	0	0	0	logfile
✔	5N6W	3595	2022-04-09	2017-02-16	4.2	4.31	—	4.2	0.001	0.36	0.0	0.04	4.92	0.00	2.309	3.73	0.00	17.7	79.7	2.6	-5.61	0.44	0.27	—	4.2	0.021	1.61	1.0	0.04	10.59	0.01	1.586	23.47	0.04	11.8	87.5	0.6	-4.11	1.47	0.68	0.64	—	40752	2512	16	0	0	0	20032	logfile
✔	7TBH	25799	2022-04-09	2021-12-22	2.3	3.49	—	2.8	0.001	0.43	0.0	0.03	8.12	0.00	2.141	6.17	0.43	7.8	91.4	0.8	0.80	0.78	0.76	0.52	2.8	0.003	0.64	0.0	0.04	13.85	0.01	2.127	7.87	0.39	2.0	97.6	0.4	2.81	0.94	0.81	0.87	2.74	51768	6288	48	0	0	0	0	logfile
✔	6KRD	0756	2022-04-05	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.80	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.008	0.86	1.0	0.05	11.99	0.00	1.822	15.45	0.01	3.3	96.6	0.1	-0.02	1.78	0.63	0.59	—	61005	8006	16	0	0	0	0	logfile
✔	6K9L	9950	2022-04-07	2019-06-16	4.27	4.50	—	4.2	0.001	0.49	0.0	0.04	9.31	0.00	2.240	4.75	4.95	4.6	95.4	0.0	-3.11	0.84	0.71	—	4.2	0.003	0.70	0.0	0.04	9.93	0.00	2.093	13.21	0.00	8.3	91.7	0.0	0.47	1.81	0.85	0.75	—	30601	5103	2	0	0	0	0	logfile
✔	6KS8	0760	2022-04-05	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.85	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.69	0.0	0.04	11.61	0.00	2.100	15.56	0.01	3.0	97.0	0.0	-0.13	1.85	0.80	0.71	—	61943	8120	16	0	0	0	0	logfile
✔	6D00	7782	2022-04-08	2018-04-09	4.0	3.65	—	3.0	0.001	0.45	0.0	0.04	9.42	0.00	2.284	3.91	0.05	6.5	92.8	0.7	-4.95	0.62	0.43	—	3.4	0.004	0.85	0.0	0.04	15.19	0.01	2.117	14.55	0.39	3.2	96.7	0.0	-0.43	1.59	0.83	0.68	—	38328	4824	12	0	12	0	0	logfile
✔	5oAF	3773	2022-04-06	2017-06-21	4.06	4.15	—	4.1	0.001	0.47	0.0	0.04	9.13	0.00	2.165	12.38	0.28	2.4	97.6	0.0	-2.75	0.69	0.67	—	4.1	0.003	0.70	0.0	0.04	12.90	0.00	2.107	13.73	0.00	4.1	95.8	0.0	-0.36	3.56	0.72	0.72	—	19748	2538	12	0	6	0	0	logfile
✔	5ZBo	6746	2022-04-08	2018-02-12	4.12	4.69	—	4.8	0.001	0.38	0.0	0.04	15.92	0.00	2.148	1.93	0.49	11.1	86.2	2.7	-4.88	0.71	0.60	—	4.1	0.003	0.77	1.0	0.04	13.18	0.00	2.045	19.38	0.00	5.9	94.1	0.0	-2.25	2.94	0.74	0.79	—	89100	10860	60	0	0	0	0	logfile
✘	7FiJ	31599	2022-04-04	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3061	561	1	0	0	0	0	logfile
✔	7SAM	24952	2022-04-04	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.006	0.88	0.0	0.04	22.86	0.01	1.817	83.53	0.00	0.0	0.0	0.0	—	5.89	0.95	0.86	—	5399	0	1	169	0	0	1802	logfile
✔	7T4M	25680	2022-04-09	2021-12-10	2.48	2.77	2.55	2.7	0.001	0.38	0.0	0.04	9.69	0.00	2.253	4.85	0.97	1.6	98.4	0.0	1.34	0.72	0.86	4.48	2.7	0.003	0.50	0.0	0.04	12.95	0.00	2.169	5.68	0.69	1.4	98.6	0.0	1.55	0.90	0.73	0.88	3.98	39054	4854	12	0	0	0	0	logfile
✔	5G2Y	3332	2022-04-05	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.01	0.0	0.05	23.66	0.01	1.957	72.02	0.00	0.0	0.0	0.0	—	3.26	0.89	0.78	—	13494	0	1	630	0	0	0	logfile
✔	5G2X	3331	2022-04-06	2016-04-16	3.8	3.49	—	3.4	0.001	0.31	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.004	0.76	0.0	0.04	17.15	0.01	1.994	28.48	0.45	18.5	80.5	1.1	-4.42	1.71	0.79	0.64	0.68	19072	487	3	704	0	0	0	logfile
✔	6HD5	0201	2022-04-04	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.73	0.0	0.04	11.96	0.00	2.138	15.18	0.00	5.4	94.5	0.1	-0.09	2.01	0.45	0.55	—	9707	1234	3	0	0	0	0	logfile
✔	6NF8	9362	2022-04-05	2018-12-19	3.48	3.99	—	3.6	0.001	0.39	0.0	0.03	12.76	0.00	1.916	3.05	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.003	0.67	0.0	0.04	15.68	0.00	2.019	12.72	0.19	5.5	94.5	0.0	-0.34	2.59	0.84	0.79	1.23	65776	5509	32	952	147	0	0	logfile

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