Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XLH	22244	2021-08-08	2020-06-28	2.83	2.93	—	2.9	0.001	0.39	0.0	0.04	7.54	0.00	2.093	5.96	0.13	1.5	98.5	0.0	-3.84	0.73	0.80	3.26	2.9	0.003	0.61	0.0	0.04	16.61	0.00	1.978	9.15	2.47	3.0	97.0	0.0	-0.65	1.47	0.77	0.87	3.78	13608	1675	6	0	6	0	0	logfile
✔	6KS8	0760	2021-08-09	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.83	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.73	0.0	0.04	11.67	0.00	2.099	18.19	0.06	3.7	96.3	0.0	-0.31	1.99	0.82	0.73	—	61943	8120	16	0	0	0	0	logfile
✔	6XLC	22239	2021-08-07	2020-06-28	3.66	3.01	—	3.7	0.001	0.38	0.0	0.04	12.67	0.00	2.079	6.07	0.00	1.6	98.4	0.0	-2.69	0.66	0.64	1.16	3.6	0.004	0.65	0.0	0.04	15.92	0.01	1.913	13.20	0.46	2.8	97.2	0.0	-0.39	1.48	0.72	0.75	2.05	9858	1212	4	0	4	0	0	logfile
✔	6XLE	22241	2021-08-08	2020-06-28	2.74	2.85	—	2.8	0.001	0.36	0.0	0.04	9.93	0.00	2.095	5.07	0.07	1.4	98.6	0.0	-3.54	0.75	0.80	3.20	2.8	0.004	0.59	0.0	0.04	16.52	0.00	1.972	8.38	1.11	2.9	97.1	0.0	-0.38	1.32	0.79	0.86	3.43	12240	1502	6	0	6	0	0	logfile
✔	5G2X	3331	2021-08-08	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.006	0.99	0.0	0.05	21.03	0.01	1.921	46.80	0.23	20.8	77.9	1.3	-4.85	2.50	0.81	0.67	1.09	19072	487	3	704	0	0	0	logfile
✔	6K9L	9950	2021-08-10	2019-06-16	4.27	4.50	—	4.2	0.001	0.49	0.0	0.04	9.31	0.00	2.240	4.75	4.95	4.6	95.4	0.0	-3.11	0.84	0.71	—	4.2	0.002	0.67	0.0	0.04	9.83	0.00	2.138	11.84	0.07	7.2	92.8	0.0	0.83	1.81	0.85	0.75	—	30601	5103	2	0	0	0	0	logfile
✔	6X34	22017	2021-08-13	2020-05-21	4.7	6.14	4.99	4.8	0.001	0.41	0.0	0.03	9.38	0.00	2.258	3.73	0.61	1.6	98.4	0.0	-2.99	0.74	0.66	—	4.8	0.003	0.66	0.0	0.04	9.74	0.00	2.039	14.09	0.00	4.8	95.2	0.0	0.36	1.04	0.80	0.80	—	97888	13956	12	0	1320	0	0	logfile
✔	7EoS	31229	2021-08-09	2021-04-22	3.9	4.43	—	3.9	0.001	0.40	0.0	0.04	9.12	0.00	2.254	6.51	1.89	4.1	95.8	0.1	0.47	0.88	0.78	1.32	4.0	0.003	0.67	0.0	0.04	12.78	0.00	2.091	14.40	0.11	6.7	93.3	0.1	-0.45	1.72	0.90	0.83	1.39	24600	3106	8	0	18	0	0	logfile
✔	6XLD	22240	2021-08-08	2020-06-28	3.66	3.78	—	3.7	0.001	0.37	0.0	0.04	9.87	0.00	2.061	5.73	0.58	1.5	98.5	0.0	-3.76	0.77	0.75	1.85	3.7	0.004	0.62	0.0	0.04	14.60	0.00	1.923	10.95	0.08	3.5	96.5	0.0	-0.45	1.40	0.80	0.81	2.44	10992	1349	5	0	4	0	0	logfile
✔	6XLF	22242	2021-08-08	2020-06-28	3.15	3.29	—	3.2	0.001	0.36	0.0	0.04	12.66	0.00	2.115	6.23	1.20	1.6	98.4	0.0	-4.12	0.75	0.79	2.37	3.2	0.005	0.62	0.0	0.05	15.83	0.00	1.930	10.34	0.53	4.0	96.0	0.0	-1.10	2.48	0.78	0.85	2.91	13653	1680	6	0	6	0	0	logfile
✔	6XLG	22243	2021-08-08	2020-06-28	2.71	2.81	—	2.8	0.001	0.36	0.0	0.04	10.12	0.00	2.105	5.84	0.00	1.3	98.7	0.0	-3.01	0.73	0.81	4.05	2.8	0.004	0.60	0.0	0.04	16.75	0.00	1.989	9.68	2.00	2.3	97.7	0.0	-0.27	3.19	0.77	0.88	4.05	12258	1504	6	0	6	0	0	logfile
✔	5G2Y	3332	2021-08-08	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.01	0.0	0.05	23.93	0.01	1.976	72.56	0.00	0.0	0.0	0.0	—	3.28	0.90	0.79	—	13494	0	1	630	0	0	0	logfile
✔	6KRD	0756	2021-08-09	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.79	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.003	0.73	0.0	0.04	12.59	0.00	2.028	13.76	0.01	4.9	95.0	0.1	-0.51	3.29	0.66	0.67	—	61005	8006	16	0	0	0	0	logfile
✔	6KRE	0757	2021-08-09	2019-08-21	4.45	4.34	—	4.4	0.001	0.39	0.0	0.04	7.11	0.00	2.244	6.03	0.03	4.1	95.8	0.1	-3.50	0.61	0.56	—	4.4	0.004	0.77	0.0	0.04	12.26	0.00	2.121	14.32	0.02	4.3	95.7	0.1	0.01	2.98	0.68	0.65	—	60321	7922	16	0	0	0	0	logfile
✔	7JSE	22451	2021-08-08	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.51	—	3.8	0.007	1.12	0.0	0.09	14.79	0.00	2.151	10.99	0.00	21.9	78.1	0.0	-2.77	2.79	0.69	0.70	—	13288	3168	24	32	0	0	0	logfile
✔	7JLX	22383	2021-08-07	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.83	0.0	0.04	7.84	0.00	2.303	8.24	0.00	17.7	82.3	0.0	-3.14	2.43	0.49	0.54	—	3288	664	4	0	0	0	0	logfile
✔	6PLQ	20372	2021-08-08	2019-07-01	3.4	4.30	—	4.3	0.001	0.43	0.0	0.04	7.21	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.57	0.36	0.62	3.8	0.004	0.87	0.0	0.05	14.71	0.01	2.123	13.23	0.32	4.3	95.7	0.0	-1.02	2.46	0.76	0.84	2.17	14240	1730	15	0	20	0	0	logfile
✔	7KoD	22972	2021-08-10	2020-11-08	1.655	2.30	—	1.9	0.001	0.35	0.0	0.03	8.49	0.00	2.288	0.78	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	1.9	0.004	0.50	0.0	0.03	13.81	0.00	1.878	1.88	0.11	0.9	99.1	0.0	5.24	0.59	0.87	0.93	8.04	68186	4128	48	0	0	1727	32643	logfile
✔	6KS7	0759	2021-08-09	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.70	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.004	0.84	0.0	0.05	12.57	0.00	2.088	16.60	0.04	4.0	95.9	0.1	-0.42	2.40	0.75	0.69	—	62022	8131	16	0	0	0	0	logfile
✔	5GW4	9540	2021-08-09	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.48	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	4.8	0.003	0.74	0.0	0.04	11.82	0.00	2.046	17.06	0.03	4.2	95.8	0.0	0.28	2.59	0.74	0.60	—	64544	8446	16	0	0	0	0	logfile

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