Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7U1E	26299	2023-02-22	2022-02-21	4.52	4.53	—	4.5	0.001	0.42	0.0	0.04	11.18	0.00	2.240	5.30	2.68	3.6	96.4	0.0	-1.42	0.60	0.73	—	4.4	0.004	0.71	0.0	0.05	11.83	0.00	2.127	14.33	0.07	5.5	94.5	0.0	0.08	0.59	0.61	0.76	—	18366	2741	9	0	6	0	0	logfile
✔	7XMR	33302	2023-02-17	2022-04-26	3.1	3.31	2.93	3.3	0.001	0.40	0.0	0.04	10.86	0.00	2.250	5.63	0.00	1.6	98.4	0.0	-3.39	0.52	0.64	1.08	3.3	0.003	0.65	0.0	0.04	14.81	0.00	2.142	12.96	0.29	4.1	95.9	0.0	0.09	0.66	0.59	0.74	1.37	6611	871	5	0	0	0	0	logfile
✔	6MWQ	9277	2023-02-24	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.003	0.72	0.0	0.04	13.43	0.00	2.152	8.38	1.78	4.1	95.7	0.2	-1.12	1.34	0.78	0.87	1.94	22072	2873	8	0	0	0	0	logfile
✔	7FiJ	31599	2023-02-17	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.003	0.71	0.0	0.04	10.87	0.00	2.234	8.95	1.25	10.6	89.4	0.0	-0.78	0.63	0.60	0.54	2.95	3061	561	1	0	0	0	0	logfile
✔	7XSK	33425	2023-02-20	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	15.94	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.007	0.68	0.0	0.04	18.66	0.01	1.750	33.29	0.00	0.0	0.0	0.0	—	1.90	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7LH3	23335	2023-02-19	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.71	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.003	0.62	0.0	0.04	10.77	0.00	2.289	10.84	0.00	3.5	96.5	0.0	1.90	1.12	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile
✔	6XGC	22180	2023-02-22	2020-06-17	4.1	4.25	—	4.2	0.001	0.39	0.0	0.04	7.78	0.00	2.215	5.83	0.16	2.3	97.7	0.0	1.43	0.80	0.81	—	4.2	0.003	0.68	0.0	0.04	11.21	0.00	2.210	11.27	0.00	3.3	96.7	0.0	-0.05	1.32	0.81	0.83	—	17040	2157	21	0	21	0	0	logfile
✔	7Xo2	33334	2023-02-16	2022-04-30	3.0	2.83	2.60	2.9	0.001	0.38	0.0	0.05	18.12	0.00	2.586	6.10	0.00	5.0	95.0	0.0	-0.89	0.49	0.87	6.67	2.9	0.005	0.60	0.0	0.05	19.10	0.00	2.290	4.76	3.88	7.2	92.8	0.0	-1.69	2.16	0.49	0.88	6.49	2550	372	6	0	0	0	0	logfile
✔	7Xo0	33332	2023-02-16	2022-04-30	3.0	2.48	1.85	3.1	0.001	0.39	0.0	0.05	16.62	0.00	2.280	4.76	0.00	5.0	95.0	0.0	-2.66	0.47	0.87	7.11	3.1	0.003	0.43	0.0	0.05	17.01	0.00	2.241	5.71	1.94	5.8	94.2	0.0	-2.86	0.38	0.47	0.87	6.51	2550	372	6	0	0	0	0	logfile
✔	7EoS	31229	2023-02-25	2021-04-22	3.9	4.43	—	3.9	0.001	0.40	0.0	0.04	9.12	0.00	2.254	6.49	1.89	4.1	95.8	0.1	0.47	0.88	0.78	1.32	4.0	0.004	0.70	0.0	0.04	12.64	0.00	2.106	15.01	0.30	6.6	93.3	0.1	-0.26	2.26	0.90	0.83	1.47	24600	3106	8	0	18	0	0	logfile
✘	5GW4	9540	2023-02-24	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	6KS7	0759	2023-02-23	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.72	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.003	0.70	0.0	0.04	12.04	0.00	2.131	14.80	0.03	3.3	96.6	0.1	-0.06	1.85	0.74	0.67	—	62022	8131	16	0	0	0	0	logfile
✔	6KS8	0760	2023-02-23	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.86	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.73	0.0	0.05	11.70	0.00	2.011	17.70	0.01	3.4	96.6	0.0	-0.29	1.89	0.81	0.73	—	61943	8120	16	0	0	0	0	logfile
✔	7WoG	32651	2023-02-17	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.71	0.0	0.04	10.94	0.00	2.020	21.35	0.00	13.1	86.9	0.0	-2.59	1.02	0.54	0.55	—	3362	433	3	0	0	0	0	logfile
✔	6ZGG	11205	2023-02-25	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.83	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.005	0.73	0.0	0.04	11.39	0.00	2.111	11.42	0.36	5.9	94.0	0.0	-0.97	1.78	0.87	0.83	1.19	25096	3207	3	0	0	0	0	logfile
✘	6PM5	20388	2023-02-21	2019-07-01	3.1	3.38	—	3.4	0.001	0.42	0.0	0.06	6.80	0.00	2.275	4.99	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13975	1735	15	0	15	0	0	logfile
✔	5oAF	3773	2023-02-23	2017-06-21	4.06	4.15	—	4.1	0.001	0.47	0.0	0.04	9.13	0.00	2.165	12.39	0.28	2.4	97.6	0.0	-2.75	0.69	0.67	—	4.1	0.004	0.72	0.0	0.04	12.91	0.00	2.119	16.11	0.00	4.4	95.5	0.1	-0.37	3.72	0.73	0.73	—	19748	2538	12	0	6	0	0	logfile
✔	6PLP	20371	2023-02-21	2019-07-01	3.3	3.51	—	3.8	0.001	0.46	0.0	0.04	7.10	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.44	0.72	3.32	3.6	0.003	0.64	0.0	0.04	13.63	0.00	2.098	10.70	0.19	3.6	96.4	0.0	-0.94	1.22	0.44	0.75	2.95	14240	1730	15	0	20	0	0	logfile
✔	7JSH	22454	2023-02-18	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.30	0.0	0.05	13.69	0.01	1.942	27.17	0.00	31.8	67.9	0.3	-5.48	6.11	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	7UVT	26816	2023-02-20	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	16.13	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.70	0.0	0.04	17.94	0.01	1.892	21.35	0.00	0.0	0.0	0.0	—	0.48	0.77	0.76	—	12409	0	1	386	0	0	4149	logfile

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