Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SAM	24952	2023-04-20	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.88	0.0	0.04	22.84	0.01	1.820	82.61	0.00	0.0	0.0	0.0	—	5.78	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	7JLX	22383	2023-04-20	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile
✔	7XSK	33425	2023-04-22	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	15.94	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.007	0.68	0.0	0.04	18.66	0.01	1.750	33.29	0.00	0.0	0.0	0.0	—	1.90	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	5G2X	3331	2023-04-24	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.005	0.87	0.0	0.04	19.17	0.01	1.949	36.81	0.45	21.6	77.1	1.3	-5.19	1.94	0.80	0.66	0.50	19072	487	3	704	0	0	0	logfile
✔	6KRE	0757	2023-04-21	2019-08-21	4.45	4.34	—	4.4	0.001	0.39	0.0	0.04	7.11	0.00	2.244	6.04	0.03	4.1	95.8	0.1	-3.50	0.61	0.56	—	4.4	0.003	0.68	0.0	0.04	11.97	0.00	2.090	13.71	0.03	3.5	96.4	0.1	0.20	1.80	0.67	0.64	—	60321	7922	16	0	0	0	0	logfile
✔	6K9L	9950	2023-04-29	2019-06-16	4.27	4.50	—	4.2	0.001	0.49	0.0	0.04	9.31	0.00	2.240	4.79	4.95	4.6	95.4	0.0	-3.11	0.84	0.71	—	4.2	0.002	0.68	0.0	0.04	9.69	0.00	2.113	12.22	0.00	7.1	92.9	0.0	0.72	1.80	0.85	0.75	—	30601	5103	2	0	0	0	0	logfile
✔	6ZGG	11205	2023-04-27	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.83	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.005	0.73	0.0	0.04	11.39	0.00	2.111	11.42	0.36	5.9	94.0	0.0	-0.97	1.78	0.87	0.83	1.19	25096	3207	3	0	0	0	0	logfile
✔	6KS8	0760	2023-04-22	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.86	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.73	0.0	0.05	11.70	0.00	2.011	17.70	0.01	3.4	96.6	0.0	-0.29	1.89	0.81	0.73	—	61943	8120	16	0	0	0	0	logfile
✔	6KS7	0759	2023-04-22	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.72	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.003	0.70	0.0	0.04	12.04	0.00	2.131	14.80	0.03	3.3	96.6	0.1	-0.06	1.85	0.74	0.67	—	62022	8131	16	0	0	0	0	logfile
✔	5oAF	3773	2023-04-25	2017-06-21	4.06	4.15	—	4.1	0.001	0.47	0.0	0.04	9.13	0.00	2.165	12.39	0.28	2.4	97.6	0.0	-2.75	0.69	0.67	—	4.1	0.004	0.72	0.0	0.04	12.91	0.00	2.119	16.11	0.00	4.4	95.5	0.1	-0.37	3.72	0.73	0.73	—	19748	2538	12	0	6	0	0	logfile
✔	7WoG	32651	2023-04-20	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.71	0.0	0.04	10.94	0.00	2.020	21.35	0.00	13.1	86.9	0.0	-2.59	1.02	0.54	0.55	—	3362	433	3	0	0	0	0	logfile
✔	6X35	22018	2023-04-21	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.37	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.003	0.64	0.0	0.04	11.49	0.00	2.229	8.53	0.02	3.2	96.8	0.0	1.06	1.69	0.57	0.72	—	111888	14740	16	0	1432	0	0	logfile
✔	6X33	22016	2023-04-22	2020-05-21	4.2	4.35	—	4.3	0.001	0.37	0.0	0.03	9.39	0.00	2.304	3.24	0.00	1.9	98.1	0.0	-4.22	0.55	0.69	—	4.3	0.003	0.64	0.0	0.04	11.75	0.00	2.056	8.49	0.06	3.0	97.0	0.0	0.21	0.65	0.57	0.72	—	112372	14796	16	0	1436	0	0	logfile
✔	7XMR	33302	2023-04-20	2022-04-26	3.1	3.31	2.93	3.3	0.001	0.40	0.0	0.04	10.86	0.00	2.250	5.63	0.00	1.6	98.4	0.0	-3.39	0.52	0.64	1.08	3.3	0.003	0.65	0.0	0.04	14.81	0.00	2.142	12.96	0.29	4.1	95.9	0.0	0.09	0.66	0.59	0.74	1.37	6611	871	5	0	0	0	0	logfile
✔	6X32	22015	2023-04-22	2020-05-21	3.8	3.75	—	3.9	0.001	0.36	0.0	0.03	7.99	0.00	2.266	3.27	0.00	1.4	98.6	0.0	-3.72	0.56	0.69	2.26	3.9	0.004	0.67	0.0	0.04	13.24	0.00	2.114	9.22	0.43	3.1	96.9	0.0	0.55	1.68	0.60	0.74	1.86	114280	14744	16	0	1416	0	0	logfile
✔	8H8B	34541	2023-04-20	2022-10-22	3.16	3.37	3.20	3.3	0.001	0.46	0.0	0.04	13.00	0.00	2.226	6.42	0.67	6.3	93.7	0.0	-2.99	0.70	0.76	2.74	3.3	0.003	0.62	0.0	0.04	15.26	0.00	2.256	6.60	0.34	9.5	90.5	0.0	-1.76	0.61	0.74	0.85	3.67	8344	1027	1	0	0	0	0	logfile
✔	6SB3	10134	2023-04-28	2019-07-18	3.5	3.63	3.51	3.7	0.002	0.56	0.0	0.04	12.98	0.00	2.104	13.24	0.00	4.9	95.1	0.0	-2.84	0.68	0.71	1.27	3.6	0.005	0.68	0.0	0.05	15.97	0.00	2.036	17.49	0.63	7.7	92.3	0.0	-1.43	1.22	0.71	0.76	0.99	75712	9664	32	0	32	0	0	logfile
✔	6T9L	10415	2023-04-24	2019-10-28	3.6	3.74	3.53	3.6	0.002	0.47	0.0	0.03	22.54	0.00	2.136	7.11	0.07	1.1	98.9	0.0	-1.63	0.74	0.68	0.82	3.6	0.003	0.61	0.0	0.04	24.88	0.00	2.026	8.92	0.30	2.4	97.6	0.0	1.15	0.81	0.84	0.83	1.11	18157	1532	18	290	8	0	0	logfile
✔	7TBZ	25802	2023-04-22	2021-12-22	4.3	4.56	4.01	4.0	0.002	0.56	0.0	0.04	12.08	0.00	2.207	6.66	0.00	3.8	96.2	0.1	-2.61	0.70	0.77	—	4.0	0.003	0.68	0.0	0.04	12.09	0.00	2.162	10.10	0.00	6.3	93.7	0.0	0.15	2.66	0.72	0.82	—	13275	1788	4	0	10	0	0	logfile
✔	7VXM	32184	2023-04-29	2021-11-12	3.6	3.96	—	3.8	0.002	0.51	0.0	0.04	7.69	0.00	2.159	7.97	0.00	3.9	95.9	0.2	-2.41	0.49	0.54	0.82	3.8	0.003	0.66	0.0	0.04	14.30	0.00	2.086	11.95	0.24	3.5	96.5	0.0	-0.04	1.68	0.58	0.73	1.22	29901	3791	4	0	0	0	0	logfile

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