Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JGF	22325	2023-02-17	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.63	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.47	0.0	0.04	13.18	0.00	2.190	46.17	0.41	4.8	95.2	0.0	1.10	0.62	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	7JGD	22323	2023-02-23	2020-07-19	3.38	3.68	—	3.6	0.002	0.43	0.0	0.05	12.94	0.00	2.123	11.45	0.00	3.9	96.1	0.0	1.18	0.61	0.66	2.22	3.6	0.003	0.53	0.0	0.05	14.82	0.00	2.054	14.21	0.08	7.3	92.7	0.0	0.43	0.52	0.63	0.71	1.77	20292	1435	1	0	0	0	8505	logfile
✔	7oNL	12997	2023-02-21	2021-05-25	3.9	3.35	3.58	3.6	0.002	0.38	0.0	0.04	9.17	0.00	2.180	5.51	0.41	1.5	98.5	0.0	2.97	0.64	0.80	2.02	3.6	0.003	0.63	0.0	0.04	13.87	0.00	2.200	9.71	0.74	1.4	98.6	0.0	2.16	0.57	0.64	0.81	1.09	13923	1827	7	0	0	0	0	logfile
✔	7F1R	31423	2023-02-18	2021-06-09	3.0	3.21	—	3.2	0.002	0.48	0.0	0.04	11.21	0.00	2.224	8.00	0.46	1.5	98.5	0.0	-2.21	0.59	0.70	1.80	3.2	0.004	0.71	0.0	0.04	15.11	0.00	2.161	13.20	3.82	3.9	96.1	0.0	0.37	1.26	0.63	0.80	2.53	6621	894	4	0	0	0	0	logfile
✔	7P1J	13162	2023-02-17	2021-07-01	3.04	4.02	2.96	4.0	0.002	0.48	0.0	0.03	8.89	0.00	2.305	5.96	2.29	3.5	96.5	0.0	2.14	0.65	0.71	0.64	4.0	0.003	0.87	0.0	0.04	14.68	0.00	2.227	16.91	0.72	6.3	93.7	0.0	0.73	1.43	0.66	0.74	0.77	6502	868	2	0	0	0	0	logfile
✔	6Z3Y	11066	2023-02-17	2020-05-22	3.51	3.78	3.53	3.6	0.002	0.52	0.0	0.04	11.75	0.00	2.269	9.32	1.68	5.6	94.4	0.0	0.09	0.59	0.70	0.69	3.6	0.003	0.83	0.0	0.05	14.87	0.00	2.036	17.43	0.31	8.8	91.2	0.0	-0.62	0.72	0.59	0.71	0.99	6131	771	2	0	0	0	0	logfile
✔	7TQV	26073	2023-02-22	2022-01-27	3.43	3.72	—	3.7	0.002	0.38	0.0	0.04	7.79	0.00	2.162	5.00	0.82	3.8	96.2	0.0	-0.34	0.68	0.69	2.18	3.6	0.003	0.56	0.0	0.04	12.72	0.00	2.213	8.13	0.33	3.7	96.3	0.0	-0.50	1.51	0.73	0.76	2.12	17792	2083	8	66	0	0	0	logfile
✔	7PUY	13662	2023-02-19	2021-10-01	3.3	3.42	2.55	3.3	0.002	0.61	0.0	0.04	14.51	0.00	2.067	13.87	1.90	3.0	97.0	0.0	-0.75	0.70	0.68	1.46	3.3	0.004	0.70	0.0	0.05	16.65	0.00	2.112	15.92	0.36	4.8	95.2	0.0	-0.41	0.68	0.73	0.74	1.70	10395	1224	24	0	42	0	0	logfile
✔	7LBE	23252	2023-02-21	2021-01-07	2.9	3.31	—	3.2	0.002	0.44	0.0	0.04	12.74	0.00	2.200	3.47	0.00	2.8	97.2	0.0	1.20	0.69	0.82	3.12	3.2	0.005	0.65	0.0	0.05	15.87	0.00	2.132	8.18	1.84	3.9	96.1	0.0	0.50	0.44	0.70	0.85	2.79	13511	1653	13	0	27	0	0	logfile
✔	7M42	23662	2023-02-18	2021-03-19	3.3	3.66	—	3.6	0.002	0.54	0.0	0.04	12.86	0.00	2.128	6.83	1.22	3.5	96.4	0.1	-2.65	0.63	0.65	3.52	3.6	0.002	0.60	0.0	0.04	14.72	0.00	2.098	7.46	0.11	4.0	95.9	0.1	-0.86	0.94	0.68	0.84	3.59	8115	1070	6	0	3	0	0	logfile
✔	7CR3	30446	2023-02-21	2020-08-12	3.6	3.76	—	3.7	0.002	0.55	0.0	0.04	14.56	0.00	2.232	12.46	0.00	3.3	96.7	0.0	-3.24	0.61	0.75	1.93	3.7	0.003	0.88	0.0	0.04	16.74	0.00	2.172	16.93	0.42	3.4	96.6	0.0	0.98	2.01	0.60	0.72	1.15	15924	1968	8	0	0	0	0	logfile
✘	7R8B	24314	2023-02-19	2021-06-26	3.1	3.48	—	3.3	0.002	0.55	0.0	0.04	13.48	0.00	2.103	6.66	1.94	3.5	96.5	0.0	-1.73	0.67	0.85	2.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10868	1371	6	0	2	0	0	logfile
✔	7PY1	13707	2023-02-26	2021-10-08	3.8	2.55	—	2.2	0.002	0.56	0.0	0.04	16.22	0.00	2.154	8.07	0.04	4.8	95.2	0.1	-0.59	0.75	0.75	1.14	2.2	0.004	0.73	0.0	0.04	18.19	0.00	1.921	11.78	0.57	6.5	93.4	0.1	-0.72	0.56	0.76	0.75	1.16	27442	3307	10	75	3	0	0	logfile
✔	7QNB	14073	2023-02-21	2021-12-20	3.1	3.62	—	3.3	0.002	0.40	0.0	0.04	9.33	0.00	2.241	5.47	0.56	1.7	98.3	0.0	1.87	0.75	0.84	3.27	3.3	0.006	0.71	0.0	0.05	12.85	0.00	2.100	9.27	0.31	3.3	96.7	0.0	0.94	2.00	0.78	0.90	3.89	14793	1767	15	0	24	0	0	logfile
✔	8B1U	15805	2023-02-24	2022-09-12	3.8	3.92	3.70	3.8	0.002	0.51	0.0	0.04	12.03	0.00	2.172	5.77	1.51	1.1	98.9	0.0	-0.66	0.77	0.78	1.88	3.8	0.003	0.62	0.0	0.04	16.44	0.00	2.166	9.54	0.16	2.2	97.8	0.0	0.87	1.38	0.79	0.82	2.03	24127	2886	6	51	2	0	0	logfile
✔	7SQS	25392	2023-02-17	2021-11-06	3.1	3.86	2.91	3.6	0.002	0.47	0.0	0.04	13.61	0.00	2.317	3.59	0.22	2.9	97.1	0.0	1.01	0.76	0.84	2.45	3.6	0.004	0.57	0.0	0.04	14.95	0.00	2.243	4.28	0.00	4.6	95.4	0.0	0.93	0.32	0.77	0.86	2.75	4376	560	5	0	0	0	0	logfile
✔	7FHo	31588	2023-02-23	2021-07-29	2.8	2.98	—	3.1	0.002	0.57	0.0	0.04	12.96	0.00	2.179	6.20	0.17	3.1	96.9	0.0	1.34	0.64	0.80	3.27	3.0	0.003	0.56	0.0	0.04	15.70	0.00	2.142	6.86	0.61	2.8	97.2	0.0	2.82	1.11	0.65	0.84	2.97	10648	1294	4	0	6	0	0	logfile
✔	7QN8	14070	2023-02-22	2021-12-20	3.1	3.39	—	3.2	0.002	0.42	0.0	0.04	8.28	0.00	2.247	3.93	0.34	0.5	99.5	0.0	2.21	0.79	0.86	3.96	3.1	0.002	0.60	0.0	0.04	13.00	0.00	2.181	8.10	0.34	1.2	98.8	0.0	1.88	0.80	0.80	0.90	3.94	16755	1992	19	0	32	0	0	logfile
✔	7XMS	33303	2023-02-18	2022-04-26	2.9	3.10	2.83	3.2	0.002	0.46	0.0	0.04	10.09	0.00	2.251	6.90	0.00	2.9	97.1	0.0	-4.06	0.55	0.65	1.49	3.1	0.004	0.76	0.0	0.04	14.98	0.00	2.040	14.79	1.73	3.7	96.3	0.0	-0.47	0.80	0.61	0.76	2.09	8370	1113	6	0	0	0	0	logfile
✔	7WVU	32858	2023-02-18	2022-02-11	3.3	3.40	—	3.4	0.002	0.47	0.0	0.04	13.25	0.00	2.221	8.29	0.00	2.3	97.7	0.0	0.98	0.58	0.72	1.55	3.4	0.003	0.59	0.0	0.04	15.27	0.00	2.230	11.63	0.14	3.2	96.8	0.0	0.55	1.14	0.61	0.78	2.12	6862	909	5	0	0	0	0	logfile

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