Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NL9	12461	2023-08-15	2021-02-22	2.86	2.98	—	3.0	0.003	0.47	0.0	0.04	13.12	0.00	2.173	6.61	0.00	2.5	97.5	0.0	1.60	0.68	0.86	2.20	3.0	0.003	0.53	0.0	0.04	15.62	0.00	1.934	6.50	1.23	1.6	98.4	0.0	3.63	0.41	0.68	0.88	2.26	18756	1269	15	0	0	0	9500	logfile
✔	6L7E	0843	2023-08-24	2019-11-01	3.2	3.28	—	3.2	0.004	0.78	0.0	0.05	8.54	0.01	2.217	3.24	0.05	3.3	96.7	0.0	-4.72	0.78	0.85	3.48	3.2	0.003	0.55	0.0	0.04	14.21	0.00	2.055	6.21	0.16	2.6	97.4	0.0	1.22	2.01	0.79	0.88	3.30	97400	12270	5	0	0	0	0	logfile
✔	6Z1F	11028	2023-08-27	2020-05-13	2.86	3.01	—	3.1	0.008	1.33	0.0	0.08	15.50	0.00	1.507	2.78	1.00	3.7	96.2	0.1	-1.92	0.81	0.84	3.55	2.9	0.004	0.67	0.0	0.04	17.81	0.00	1.909	7.08	3.50	3.2	96.8	0.0	0.25	1.23	0.83	0.89	3.18	49815	6255	36	0	25	0	0	logfile
✔	7CMU	30410	2023-08-10	2020-07-29	3.0	3.27	—	3.3	0.005	0.49	0.0	0.04	12.33	0.00	1.996	4.13	0.00	1.7	98.3	0.0	2.96	0.61	0.74	2.42	3.3	0.003	0.62	0.0	0.04	16.18	0.00	2.086	8.65	2.08	2.2	97.8	0.0	1.68	1.19	0.64	0.80	2.62	8771	1123	5	0	1	0	0	logfile
✔	6N0G	9315	2023-08-10	2018-11-07	3.6	3.75	—	3.7	0.008	0.87	0.0	0.06	8.90	0.01	2.232	6.43	0.18	2.7	97.3	0.0	-3.39	0.81	0.85	3.75	3.7	0.005	0.69	0.0	0.04	14.85	0.00	2.087	14.18	0.56	2.3	97.7	0.0	0.17	2.43	0.81	0.86	2.93	55644	7545	57	0	0	0	0	logfile
✔	6LXV	30007	2023-08-10	2020-02-12	2.1	2.18	—	2.2	0.025	1.66	0.0	0.12	16.07	0.01	2.196	2.01	2.81	3.9	95.9	0.1	-1.79	0.78	0.91	6.69	2.2	0.002	0.57	0.0	0.04	16.46	0.00	2.149	4.16	0.92	2.3	97.7	0.0	1.03	0.92	0.79	0.91	6.13	54924	6448	24	0	16	2967	0	logfile
✔	7NKB	12436	2023-08-14	2021-02-17	2.9	3.02	—	2.9	0.004	0.50	0.0	0.04	13.12	0.00	2.057	6.86	0.00	2.0	98.0	0.0	1.81	0.73	0.86	2.90	2.9	0.005	0.55	0.0	0.04	15.09	0.00	2.077	7.16	1.50	1.4	98.6	0.0	3.48	0.38	0.73	0.88	2.71	16769	1150	12	0	0	0	8429	logfile
✔	5T7V	8369	2023-08-16	2016-09-06	3.6	3.63	—	3.6	0.008	0.98	0.0	0.05	16.93	0.01	2.118	3.79	0.38	11.8	88.1	0.1	-5.19	0.74	0.75	3.17	3.6	0.003	0.62	0.0	0.04	17.05	0.00	2.040	8.94	0.79	9.9	90.0	0.0	-3.48	1.20	0.76	0.79	2.26	126001	4152	44	4375	17	0	0	logfile
✔	7TM0	25992	2023-08-19	2022-01-19	3.1	3.24	3.21	3.2	0.010	1.37	0.0	0.08	8.70	0.01	2.264	1.47	0.17	2.4	97.6	0.0	0.62	0.73	0.76	3.91	3.2	0.005	0.67	0.0	0.05	11.92	0.00	2.154	2.97	0.17	3.4	96.6	0.0	0.35	1.30	0.78	0.83	3.63	27963	4401	19	0	52	0	0	logfile
✔	6ZDH	11174	2023-08-14	2020-06-14	3.7	3.91	—	3.8	0.004	0.57	0.0	0.04	9.44	0.00	1.948	4.61	0.83	4.1	95.9	0.0	0.08	0.79	0.79	2.39	3.8	0.004	0.60	0.0	0.04	12.71	0.00	1.958	9.24	0.43	5.8	94.2	0.0	-0.57	0.81	0.80	0.80	2.44	66571	4308	25	0	49	0	32513	logfile
✔	7RTV	24690	2023-08-09	2021-08-15	3.96	4.06	—	4.1	0.004	0.76	0.0	0.05	14.21	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.91	0.0	0.04	16.58	0.00	2.168	18.02	0.32	3.3	96.7	0.0	2.73	1.76	0.41	0.64	0.28	2881	366	3	0	6	0	0	logfile
✔	8iD3	35356	2023-08-10	2023-02-12	3.1	3.38	3.17	3.3	0.005	0.87	0.0	0.05	14.38	0.01	2.199	8.84	0.76	3.9	96.1	0.0	-1.42	0.65	0.79	3.03	3.3	0.003	0.56	0.0	0.04	14.82	0.00	2.208	6.41	0.33	3.2	96.8	0.0	0.26	0.41	0.65	0.80	2.55	8742	1141	5	0	1	0	0	logfile
✔	7D76	30602	2023-08-10	2020-10-03	3.1	3.39	—	3.4	0.008	0.79	0.0	0.05	13.86	0.01	2.167	8.33	0.00	4.7	95.3	0.0	-2.55	0.65	0.81	3.21	3.3	0.003	0.60	0.0	0.04	15.23	0.00	2.183	7.26	0.00	4.6	95.4	0.0	0.47	2.30	0.64	0.81	2.73	7015	874	6	0	7	0	0	logfile
✔	7LJD	23391	2023-08-10	2021-01-28	3.2	3.31	—	3.3	0.004	0.85	0.0	0.06	8.49	0.01	2.294	3.69	0.00	2.2	97.8	0.0	-2.10	0.57	0.72	2.46	3.3	0.002	0.58	0.0	0.04	13.71	0.00	2.174	7.15	0.11	3.0	97.0	0.0	0.45	0.74	0.62	0.79	2.07	8518	1046	6	0	11	0	0	logfile
✔	8iD8	35359	2023-08-10	2023-02-12	3.0	3.25	3.12	3.3	0.004	0.66	0.0	0.04	13.18	0.00	1.393	8.92	0.33	3.3	96.7	0.0	-0.43	0.67	0.78	2.54	3.3	0.003	0.60	0.0	0.04	15.71	0.00	2.175	7.16	2.77	3.0	97.0	0.0	0.47	0.41	0.62	0.78	2.33	8635	1137	6	0	1	0	0	logfile
✔	7CX2	30489	2023-08-10	2020-09-01	2.8	3.21	—	3.1	0.004	0.71	0.0	0.05	13.59	0.01	1.994	8.54	0.12	3.7	96.3	0.0	-2.13	0.69	0.82	3.34	3.1	0.004	0.63	0.0	0.04	16.01	0.00	2.107	6.88	2.26	3.2	96.8	0.0	0.70	1.15	0.62	0.78	3.29	7930	1020	6	0	1	1	0	logfile
✘	7RGM	24452	2023-08-11	2021-07-15	2.8	2.86	—	2.9	0.014	1.70	0.0	0.08	15.75	0.01	2.328	1.94	3.63	5.2	94.6	0.3	-1.77	0.62	0.86	3.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	59928	3872	16	0	32	0	29736	logfile
✔	7B00	11952	2023-08-10	2020-11-17	3.98	3.73	—	4.0	0.006	0.97	0.0	0.08	14.85	0.01	1.838	5.81	0.39	9.5	90.5	0.0	-6.20	0.59	0.79	1.66	4.0	0.003	0.75	0.0	0.04	16.30	0.00	2.149	9.80	0.64	8.2	91.8	0.0	-2.54	0.60	0.64	0.79	1.24	7389	926	7	0	9	0	0	logfile
✔	7NL0	12453	2023-08-12	2021-02-19	3.5	3.08	—	3.0	0.006	0.71	0.0	0.04	29.75	0.00	2.147	12.17	0.00	4.1	95.9	0.0	0.67	0.78	0.81	3.10	3.1	0.004	0.61	0.0	0.03	29.99	0.00	2.219	10.71	0.00	3.0	97.0	0.0	2.21	0.24	0.78	0.81	2.84	11363	755	10	262	0	0	0	logfile
✔	7NHR	12338	2023-08-23	2021-02-11	2.85	3.06	—	3.0	0.006	0.70	0.0	0.05	11.67	0.00	1.796	9.28	0.02	3.6	96.4	0.0	-0.14	0.78	0.87	3.66	3.0	0.003	0.68	0.0	0.04	14.36	0.00	2.100	9.70	1.25	3.5	96.5	0.0	1.23	0.47	0.77	0.88	2.96	37011	4772	8	0	0	0	0	logfile

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