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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8DBC | 27279 | 2024-03-16 | 2022-06-14 | 3.2 | 3.28 | 3.24 | 3.2 | 0.007 | 0.77 | 0.0 | 0.06 | 15.09 | 0.00 | 2.119 | 5.93 | 2.74 | 3.3 | 96.7 | 0.0 | 0.45 | 0.65 | 0.76 | 3.24 | 3.2 | 0.003 | 0.53 | 0.0 | 0.05 | 16.49 | 0.00 | 2.080 | 10.63 | 2.86 | 3.7 | 96.3 | 0.0 | 0.90 | 1.33 | 0.66 | 0.84 | 3.38 | 14232 | 1854 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 7Ri5 | 24474 | 2024-03-15 | 2021-07-19 | 4.0 | 4.07 | — | 4.0 | 0.007 | 1.04 | 0.0 | 0.05 | 15.00 | 0.01 | 1.904 | 22.74 | 0.31 | 13.0 | 86.8 | 0.2 | -2.74 | 0.71 | 0.75 | — | 4.0 | 0.005 | 0.80 | 0.0 | 0.05 | 16.75 | 0.00 | 2.168 | 17.03 | 2.59 | 12.7 | 87.1 | 0.2 | -2.02 | 0.56 | 0.71 | 0.74 | — | 11866 | 1520 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M3F | 23653 | 2024-03-15 | 2021-03-18 | 2.8 | 2.45 | — | 2.7 | 0.008 | 1.01 | 0.0 | 0.06 | 12.47 | 0.01 | 2.245 | 2.64 | 0.00 | 5.0 | 95.0 | 0.0 | -2.56 | 0.84 | 0.86 | 4.26 | 2.7 | 0.003 | 0.56 | 0.0 | 0.04 | 14.65 | 0.00 | 2.130 | 4.20 | 1.68 | 3.6 | 96.3 | 0.1 | -0.26 | 0.38 | 0.84 | 0.87 | 3.33 | 13084 | 1631 | 7 | 0 | 23 | 0 | 0 | logfile |
✔ | 7ARM | 11887 | 2024-03-15 | 2020-10-25 | 3.6 | 3.73 | — | 3.7 | 0.003 | 0.70 | 0.0 | 0.05 | 13.16 | 0.01 | 2.328 | 2.77 | 0.17 | 4.8 | 95.2 | 0.0 | -5.79 | 0.68 | 0.72 | 0.64 | 3.7 | 0.004 | 0.76 | 0.0 | 0.05 | 16.29 | 0.00 | 2.038 | 13.40 | 2.95 | 7.2 | 92.8 | 0.0 | -2.08 | 0.91 | 0.72 | 0.82 | 1.33 | 10971 | 1438 | 7 | 0 | 2 | 0 | 0 | logfile |
✔ | 7YG7 | 33810 | 2024-03-23 | 2022-07-11 | 3.7 | 3.35 | 3.38 | 3.3 | 0.004 | 0.80 | 0.0 | 0.05 | 18.89 | 0.01 | 2.065 | 5.65 | 1.00 | 9.7 | 90.3 | 0.0 | -2.57 | 0.71 | 0.73 | 1.83 | 3.3 | 0.003 | 0.62 | 0.0 | 0.04 | 18.55 | 0.00 | 2.092 | 8.98 | 3.40 | 11.7 | 88.3 | 0.0 | -1.33 | 0.35 | 0.72 | 0.75 | 1.98 | 38035 | 4554 | 12 | 99 | 0 | 0 | 0 | logfile |
✔ | 6WYJ | 21966 | 2024-03-10 | 2020-05-13 | 3.7 | 3.74 | — | 3.8 | 0.010 | 0.64 | 0.0 | 0.05 | 12.33 | 0.00 | 2.268 | 5.08 | 0.00 | 5.3 | 94.7 | 0.0 | -4.80 | 0.59 | 0.78 | 4.37 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 14.60 | 0.00 | 2.249 | 5.08 | 2.56 | 1.5 | 98.5 | 0.0 | 1.79 | 0.58 | 0.64 | 0.81 | 1.65 | 2949 | 398 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 6WB8 | 21586 | 2024-03-16 | 2020-03-26 | 3.24 | 3.55 | — | 3.5 | 0.011 | 0.91 | 0.0 | 0.05 | 8.89 | 0.00 | 2.124 | 16.94 | 0.00 | 5.9 | 93.9 | 0.2 | -3.70 | 0.73 | 0.79 | 3.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14888 | 1852 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 7U5M | 26355 | 2024-03-15 | 2022-03-02 | 2.28 | 2.36 | 2.38 | 2.4 | 0.008 | 0.96 | 0.0 | 0.07 | 14.03 | 0.00 | 2.296 | 4.95 | 1.87 | 3.6 | 96.4 | 0.0 | -0.13 | 0.74 | 0.83 | 6.21 | 2.4 | 0.003 | 0.57 | 0.0 | 0.05 | 16.10 | 0.00 | 2.187 | 5.74 | 1.31 | 2.0 | 98.0 | 0.0 | -0.38 | 0.32 | 0.75 | 0.84 | 5.71 | 10627 | 1328 | 12 | 0 | 4 | 399 | 0 | logfile |
✔ | 7LLY | 23436 | 2024-03-11 | 2021-02-04 | 3.3 | 3.93 | 3.18 | 3.8 | 0.003 | 0.47 | 0.0 | 0.04 | 15.15 | 0.00 | 1.982 | 3.05 | 0.68 | 2.0 | 98.0 | 0.0 | -2.48 | 0.73 | 0.82 | 1.82 | 3.7 | 0.002 | 0.63 | 0.0 | 0.04 | 16.49 | 0.00 | 2.166 | 8.37 | 3.30 | 3.1 | 96.9 | 0.0 | 0.60 | 0.46 | 0.73 | 0.84 | 1.77 | 8549 | 1101 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QD2 | 4517 | 2024-03-18 | 2018-12-31 | 4.8 | 4.92 | 5.85 | 4.9 | 0.006 | 0.86 | 0.0 | 0.04 | 9.04 | 0.01 | 2.025 | 6.53 | 0.00 | 11.6 | 88.4 | 0.0 | -4.60 | 0.35 | 0.62 | — | 4.9 | 0.004 | 0.70 | 0.0 | 0.04 | 10.80 | 0.01 | 2.038 | 14.21 | 0.00 | 10.0 | 90.0 | 0.0 | -2.07 | 1.11 | 0.39 | 0.66 | — | 21746 | 1420 | 5 | 0 | 2 | 0 | 11100 | logfile |
✔ | 6X79 | 22083 | 2024-03-18 | 2020-05-29 | 2.9 | 3.14 | 3.00 | 3.1 | 0.014 | 1.35 | 0.0 | 0.10 | 10.28 | 0.01 | 2.382 | 0.25 | 0.26 | 2.5 | 97.5 | 0.0 | 0.59 | 0.71 | 0.74 | 3.18 | 3.1 | 0.003 | 0.62 | 0.0 | 0.04 | 13.97 | 0.00 | 2.201 | 5.50 | 3.01 | 2.2 | 97.8 | 0.0 | 0.24 | 1.35 | 0.71 | 0.81 | 2.57 | 22251 | 2850 | 15 | 0 | 51 | 0 | 0 | logfile |
✔ | 6QCY | 4513 | 2024-03-18 | 2018-12-31 | 4.7 | 4.78 | 5.41 | 4.7 | 0.009 | 1.05 | 0.0 | 0.05 | 9.70 | 0.01 | 2.012 | 8.28 | 0.00 | 14.0 | 86.0 | 0.0 | -4.43 | 0.50 | 0.63 | — | 4.7 | 0.002 | 0.61 | 0.0 | 0.04 | 10.59 | 0.00 | 1.928 | 8.88 | 0.00 | 7.0 | 93.0 | 0.0 | -1.34 | 2.14 | 0.49 | 0.63 | — | 21746 | 1420 | 6 | 0 | 2 | 0 | 11100 | logfile |
✔ | 6X12 | 21986 | 2024-03-10 | 2020-05-18 | 3.52 | 3.69 | — | 3.7 | 0.008 | 1.08 | 0.0 | 0.06 | 16.64 | 0.01 | 2.322 | 3.01 | 0.00 | 2.7 | 97.3 | 0.0 | -5.29 | 0.65 | 0.84 | 1.43 | 3.7 | 0.002 | 0.62 | 0.0 | 0.04 | 16.26 | 0.00 | 2.263 | 7.61 | 2.84 | 2.5 | 97.5 | 0.0 | 0.21 | 1.17 | 0.67 | 0.85 | 1.33 | 3059 | 407 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6RTC | 4997 | 2024-03-17 | 2019-05-23 | 3.96 | 4.05 | 3.97 | 4.0 | 0.007 | 0.91 | 0.0 | 0.05 | 14.96 | 0.01 | 2.295 | 1.19 | 0.00 | 3.9 | 96.1 | 0.0 | -3.83 | 0.68 | 0.80 | 1.58 | 4.0 | 0.003 | 0.58 | 0.0 | 0.04 | 16.17 | 0.00 | 2.171 | 6.71 | 2.00 | 6.1 | 93.9 | 0.0 | 0.41 | 0.63 | 0.69 | 0.81 | 1.70 | 19374 | 1242 | 2 | 0 | 0 | 0 | 9804 | logfile |
✔ | 6PM2 | 20384 | 2024-03-16 | 2019-07-01 | 3.0 | 3.52 | — | 3.4 | 0.004 | 0.95 | 0.0 | 0.05 | 11.03 | 0.01 | 2.330 | 4.47 | 0.00 | 4.3 | 95.7 | 0.0 | -5.02 | 0.59 | 0.82 | 4.42 | 3.4 | 0.003 | 0.68 | 0.0 | 0.04 | 14.29 | 0.00 | 2.176 | 9.69 | 3.29 | 4.2 | 95.8 | 0.0 | -1.10 | 1.07 | 0.57 | 0.83 | 3.68 | 14125 | 1730 | 15 | 0 | 20 | 0 | 0 | logfile |
✔ | 6NMA | 0445 | 2024-03-15 | 2019-01-10 | 3.38 | 3.71 | — | 3.7 | 0.009 | 0.78 | 0.0 | 0.05 | 15.89 | 0.00 | 1.973 | 10.70 | 8.09 | 11.0 | 89.0 | 0.1 | -4.94 | 0.65 | 0.78 | 2.70 | 3.7 | 0.002 | 0.58 | 0.0 | 0.04 | 17.06 | 0.00 | 2.213 | 7.80 | 3.97 | 7.1 | 92.9 | 0.0 | -1.46 | 0.46 | 0.65 | 0.78 | 1.74 | 12404 | 1435 | 6 | 25 | 2 | 0 | 0 | logfile |
✔ | 6XTB | 10618 | 2024-03-10 | 2020-01-15 | 4.3 | 4.32 | — | 3.9 | 0.006 | 1.17 | 0.0 | 0.07 | 8.68 | 0.00 | 2.369 | 3.00 | 0.00 | 15.6 | 84.4 | 0.0 | -4.66 | 0.32 | 0.43 | — | 4.1 | 0.005 | 1.12 | 0.0 | 0.05 | 9.13 | 0.00 | 2.119 | 10.22 | 0.00 | 25.1 | 74.9 | 0.0 | -5.72 | 2.48 | 0.34 | 0.65 | — | 1161 | 235 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P2Q | 13172 | 2024-03-10 | 2021-07-06 | 4.9 | 4.54 | — | 4.3 | 0.004 | 0.84 | 0.0 | 0.05 | 11.11 | 0.01 | 2.264 | 4.17 | 0.00 | 5.0 | 95.0 | 0.0 | -3.09 | 0.77 | 0.72 | — | 4.3 | 0.003 | 0.75 | 0.0 | 0.04 | 12.26 | 0.00 | 2.174 | 14.19 | 0.00 | 4.8 | 95.2 | 0.0 | -0.30 | 1.55 | 0.80 | 0.74 | — | 4780 | 587 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 6oN2 | 20133 | 2024-03-19 | 2019-04-19 | 3.0 | 2.42 | 2.92 | 2.9 | 0.006 | 0.98 | 0.0 | 0.06 | 10.37 | 0.01 | 2.073 | 6.77 | 0.42 | 3.8 | 96.1 | 0.0 | -3.98 | 0.84 | 0.83 | 2.99 | 2.9 | 0.003 | 0.64 | 0.0 | 0.04 | 15.32 | 0.00 | 1.946 | 10.21 | 1.64 | 2.8 | 97.2 | 0.0 | 0.25 | 1.29 | 0.86 | 0.86 | 2.46 | 24350 | 3130 | 13 | 0 | 11 | 0 | 0 | logfile |
✔ | 5GAQ | 8015 | 2024-03-18 | 2016-01-05 | 3.1 | 3.36 | — | 3.2 | 0.006 | 1.02 | 0.0 | 0.08 | 11.97 | 0.00 | 2.289 | 1.94 | 0.80 | 7.3 | 92.7 | 0.0 | -3.69 | 0.56 | 0.50 | 3.88 | 3.2 | 0.004 | 0.73 | 1.0 | 0.05 | 16.19 | 0.00 | 1.816 | 12.29 | 3.41 | 2.4 | 97.6 | 0.0 | -1.65 | 0.78 | 0.79 | 0.85 | 3.65 | 20574 | 2592 | 9 | 0 | 0 | 0 | 0 | logfile |