Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SAM	24952	2023-02-17	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.88	0.0	0.04	22.84	0.01	1.820	82.61	0.00	0.0	0.0	0.0	—	5.78	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	6XF6	22162	2023-02-24	2020-06-15	4.0	4.88	4.07	4.1	0.004	0.77	0.0	0.06	11.35	0.01	2.249	3.71	0.21	2.6	97.4	0.0	0.03	0.85	0.78	—	4.1	0.003	0.61	0.0	0.04	12.83	0.00	2.105	12.62	0.13	3.6	96.4	0.0	0.41	1.23	0.87	0.84	—	22938	2928	18	0	59	0	0	logfile
✔	6VXX	24693	2023-02-24	2020-02-25	2.8	3.28	2.89	39.0	0.016	1.35	0.0	0.09	10.67	0.01	2.389	0.81	0.23	2.4	97.6	0.0	0.27	0.07	0.00	0.14	2.8	0.003	0.69	0.0	0.05	13.86	0.00	2.095	12.22	2.00	3.9	96.1	0.0	-0.28	1.68	0.14	0.11	0.11	23694	2916	21	0	63	0	0	logfile
✔	7RU3	24695	2023-02-26	2021-08-16	3.3	4.03	3.38	3.7	0.022	1.84	0.0	0.11	10.60	0.01	2.056	1.17	0.32	3.2	96.8	0.0	0.61	0.84	0.81	2.55	3.7	0.003	0.66	0.0	0.04	13.37	0.00	2.145	8.96	0.19	3.8	96.0	0.1	0.40	0.73	0.85	0.84	1.94	28157	3537	16	0	42	0	0	logfile
✔	6M7D	30129	2023-02-17	2020-03-18	2.9	2.82	—	2.8	0.010	1.03	0.0	0.07	13.84	0.00	2.157	15.48	0.58	2.4	97.6	0.0	-0.46	0.35	0.86	4.08	2.8	0.002	0.51	0.0	0.04	15.72	0.00	2.232	8.89	1.46	1.5	98.5	0.0	2.16	0.85	0.34	0.88	3.05	3280	412	2	6	0	0	0	logfile
✔	8B9Z	15936	2023-02-25	2022-10-10	3.28	3.47	3.46	3.3	0.008	0.86	0.0	0.84	14.70	0.01	1.929	6.28	0.00	3.8	96.2	0.0	-0.52	0.80	0.84	3.18	3.3	0.007	1.35	0.0	0.26	15.95	0.00	2.073	9.37	0.24	3.0	97.0	0.0	0.86	0.44	0.81	0.86	2.65	66970	8178	64	0	39	0	0	logfile
✔	7BC5	12139	2023-02-16	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.003	0.72	0.0	0.04	17.04	0.00	2.243	14.42	0.76	7.5	92.5	0.0	-2.75	1.30	0.23	0.58	0.92	1200	161	1	0	0	0	0	logfile
✔	7RU1	24693	2023-02-25	2021-08-16	2.8	3.31	2.92	3.2	0.020	1.77	0.0	0.11	10.19	0.01	2.402	0.79	0.00	3.0	97.0	0.0	0.58	0.80	0.82	5.05	3.2	0.003	0.62	0.0	0.04	14.42	0.00	2.156	4.88	1.67	3.7	96.2	0.1	0.17	1.21	0.78	0.82	4.45	26493	3294	18	0	54	0	0	logfile
✔	5MS1	3562	2023-02-17	2016-12-29	4.25	4.22	—	4.2	0.014	1.51	0.0	0.07	9.30	0.01	2.413	2.10	0.00	5.5	93.5	1.1	-0.81	0.37	0.76	—	4.2	0.003	0.67	0.0	0.04	12.42	0.00	2.162	9.67	0.00	2.9	97.1	0.0	-0.77	1.54	0.46	0.85	—	4350	556	2	0	0	0	0	logfile
✔	7B93	12095	2023-02-26	2020-12-14	3.04	3.13	3.09	3.0	0.006	0.81	0.0	1.03	14.70	0.00	1.904	7.72	0.03	4.1	95.9	0.0	-3.26	0.76	0.85	4.00	3.0	0.008	1.59	0.0	0.31	15.82	0.00	1.949	7.99	0.14	3.1	96.9	0.0	0.99	1.17	0.77	0.88	3.14	67492	8235	67	0	35	0	0	logfile
✔	6TMJ	10523	2023-02-22	2019-12-04	3.5	3.68	3.39	3.7	0.007	0.62	0.0	0.04	13.81	0.01	2.037	6.53	0.00	8.7	91.3	0.0	-4.51	0.56	0.81	2.54	3.7	0.003	0.56	0.0	0.04	15.61	0.00	2.090	6.58	0.43	3.5	96.5	0.0	1.78	1.41	0.63	0.83	2.29	18084	1204	15	0	0	0	9178	logfile
✔	7K8X	22734	2023-02-27	2020-09-27	3.9	4.42	—	4.1	0.002	0.60	0.0	0.06	13.08	0.00	1.857	13.43	2.49	3.3	96.4	0.3	-2.04	0.76	0.69	1.31	4.1	0.003	0.63	0.0	0.04	14.35	0.00	2.127	12.49	0.23	4.6	95.4	0.0	0.02	1.18	0.80	0.83	1.72	27399	3478	10	0	28	0	0	logfile
✔	8B0J	15785	2023-02-26	2022-09-07	3.99	4.45	4.02	4.1	0.009	1.30	0.0	0.08	19.83	0.01	1.945	11.42	0.00	9.7	90.3	0.0	-2.43	0.73	0.68	1.71	4.1	0.003	0.62	0.0	0.04	19.52	0.00	1.931	14.86	0.48	5.0	95.0	0.0	0.11	1.39	0.75	0.74	1.68	28636	1931	7	160	0	0	12434	logfile
✔	6TMi	10522	2023-02-19	2019-12-04	3.5	3.96	3.49	3.8	0.006	0.64	0.0	0.04	16.16	0.01	2.113	9.16	0.58	10.0	90.0	0.0	-4.41	0.53	0.77	1.38	3.8	0.004	0.64	0.0	0.03	17.16	0.00	2.134	9.37	0.19	7.8	92.2	0.0	0.56	1.46	0.53	0.80	1.70	9606	605	5	0	0	0	4842	logfile
✔	7oNB	12994	2023-02-23	2021-05-25	3.1	3.40	3.04	3.0	0.005	1.01	0.0	0.06	13.91	0.01	2.273	5.59	0.00	3.6	96.4	0.0	-1.28	0.76	0.71	1.66	3.0	0.003	0.63	0.0	0.04	15.77	0.00	2.163	11.13	0.16	3.0	97.0	0.0	-0.08	0.79	0.80	0.82	2.26	20140	2568	14	46	6	0	0	logfile
✔	7M3N	23658	2023-02-17	2021-03-18	2.4	2.15	2.40	1.9	0.005	0.63	0.0	0.04	15.95	0.00	2.168	5.79	4.28	4.3	95.6	0.1	-2.53	0.43	0.82	4.98	2.0	0.002	0.55	0.0	0.04	16.96	0.00	2.273	6.81	2.75	3.7	96.3	0.0	-0.46	0.48	0.45	0.84	4.74	6004	759	3	0	0	0	0	logfile
✘	8AVV	15684	2023-02-18	2022-08-27	3.4	3.53	3.39	3.5	0.008	1.38	0.0	0.08	18.27	0.01	2.580	1.80	5.03	4.7	95.1	0.2	-3.08	0.76	0.87	2.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7794	1010	4	0	2	0	0	logfile
✔	7K8Y	22735	2023-02-26	2020-09-27	4.4	5.34	—	4.4	0.002	0.53	0.0	0.05	10.71	0.00	1.137	21.70	0.04	2.8	97.0	0.3	-2.11	0.80	0.77	—	4.4	0.005	0.75	0.0	0.05	11.59	0.00	1.985	25.96	0.00	7.4	92.5	0.2	-1.14	1.18	0.82	0.83	—	25560	3242	8	0	23	0	0	logfile
✔	6RFS	4874	2023-02-23	2019-04-16	4.04	4.52	—	4.1	0.010	1.26	0.0	0.94	10.33	0.01	2.078	8.88	0.15	8.3	91.5	0.2	-4.08	0.83	0.83	—	4.1	0.008	1.57	0.0	0.29	11.95	0.00	2.089	15.73	0.00	5.9	94.1	0.0	-0.68	1.38	0.83	0.84	—	60966	7685	49	0	12	0	0	logfile
✔	7RU5	24697	2023-02-26	2021-08-16	3.6	4.35	3.76	3.7	0.020	1.81	0.0	0.11	10.31	0.01	2.413	0.95	0.06	2.9	97.1	0.0	0.47	0.84	0.72	2.57	3.8	0.004	0.65	0.0	0.04	12.62	0.00	2.143	11.58	0.13	4.2	95.7	0.1	0.17	0.62	0.85	0.77	1.98	28673	3611	20	0	40	0	0	logfile

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