Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZHX	11220	2022-12-12	2020-06-24	2.5	3.01	2.20	2.7	0.005	0.92	0.0	0.06	26.86	0.01	2.203	2.72	0.46	1.0	99.0	0.0	0.63	0.88	0.90	5.80	2.7	0.005	0.59	0.0	0.03	28.61	0.00	2.138	5.45	1.38	0.9	99.1	0.0	2.81	0.45	0.89	0.92	4.64	12313	784	22	290	0	146	0	logfile
✔	7K2T	22644	2022-12-12	2020-09-09	3.6	3.72	—	3.7	0.005	0.78	0.0	0.04	13.98	0.00	1.955	9.62	0.00	4.4	95.6	0.0	-3.30	0.69	0.84	2.63	3.7	0.003	0.62	0.0	0.04	16.23	0.00	1.932	9.87	0.45	3.7	96.3	0.0	-0.66	0.67	0.69	0.84	1.82	10275	1249	6	0	4	0	0	logfile
✔	6X16	21990	2022-12-12	2020-05-18	3.39	3.34	—	3.4	0.006	0.99	0.0	0.05	14.76	0.01	2.322	3.97	0.31	4.8	95.2	0.0	-3.86	0.40	0.73	1.79	3.4	0.002	0.56	0.0	0.04	15.07	0.00	2.191	8.24	0.00	3.5	96.5	0.0	0.91	0.32	0.44	0.76	1.38	9438	1248	6	0	6	0	0	logfile
✔	7D4F	30572	2022-12-12	2020-09-23	2.57	2.76	—	2.7	0.012	0.95	0.0	0.06	13.57	0.01	1.326	6.11	0.76	2.2	97.8	0.0	-2.50	0.73	0.85	3.63	2.8	0.002	0.50	0.0	0.04	15.76	0.00	2.210	6.11	1.24	1.6	98.4	0.0	0.37	0.44	0.75	0.88	3.54	9534	1181	4	0	4	0	0	logfile
✔	6ZKR	11259	2022-12-13	2020-06-30	3.5	3.57	—	3.5	0.008	1.01	0.0	1.03	11.78	0.01	2.249	6.12	0.08	4.5	95.5	0.0	-3.40	0.62	0.83	3.30	3.5	0.009	1.62	0.0	0.31	15.67	0.00	2.083	14.60	0.34	4.5	95.5	0.0	-0.08	0.68	0.63	0.84	2.50	67353	8157	69	0	44	0	0	logfile
✔	6PM1	20383	2022-12-13	2019-07-01	3.0	3.21	—	3.3	0.008	1.01	0.0	0.06	9.55	0.01	2.325	5.65	0.00	4.7	95.3	0.0	-4.95	0.52	0.84	4.33	3.3	0.003	0.66	0.0	0.04	15.18	0.00	2.155	8.94	2.36	3.6	96.4	0.0	-0.36	0.71	0.52	0.85	3.89	14160	1730	15	0	20	0	0	logfile
✔	7KDV	22830	2022-12-22	2020-10-09	4.59	8.08	5.28	6.0	0.004	0.82	0.0	0.05	12.35	0.01	2.109	13.08	0.98	5.4	94.2	0.4	-1.39	0.88	0.72	—	6.0	0.003	0.72	0.0	0.04	12.46	0.01	1.782	21.76	0.00	4.3	95.7	0.0	-0.40	1.66	0.94	0.86	—	51696	6312	42	0	72	0	0	logfile
✔	7KB5	22787	2022-12-12	2020-10-01	3.8	4.51	3.86	4.0	0.004	0.64	0.0	0.04	13.76	0.00	2.163	7.30	0.00	4.4	95.6	0.0	-1.47	0.65	0.84	1.16	4.0	0.003	0.63	0.0	0.04	15.15	0.00	2.186	9.02	0.19	2.7	97.3	0.0	2.17	0.54	0.65	0.84	1.19	9777	1252	6	0	0	0	0	logfile
✘	6RPo	4979	2022-12-19	2019-05-14	2.39	2.44	—	2.4	0.006	0.92	0.0	0.05	15.02	0.01	2.326	7.31	0.00	3.7	95.8	0.5	-2.67	0.72	0.86	4.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	101400	12060	60	0	0	0	0	logfile
✔	7JGD	22323	2022-12-14	2020-07-19	3.38	3.68	—	3.6	0.002	0.43	0.0	0.05	12.94	0.00	2.123	11.53	0.00	3.9	96.1	0.0	1.18	0.61	0.66	2.22	3.6	0.003	0.54	0.0	0.06	14.86	0.00	1.946	15.03	0.08	7.8	92.2	0.0	0.36	0.53	0.63	0.71	1.81	20292	1435	1	0	0	0	8505	logfile
✔	6X14	21988	2022-12-12	2020-05-18	3.71	3.82	—	3.8	0.008	1.10	0.0	0.05	16.45	0.01	2.282	6.68	0.00	3.2	96.8	0.0	-4.81	0.62	0.83	1.45	3.8	0.003	0.62	0.0	0.04	16.46	0.00	2.143	8.02	0.31	3.1	96.9	0.0	0.29	1.16	0.62	0.83	1.26	9486	1239	6	0	9	0	0	logfile
✔	7DSQ	30841	2022-12-11	2020-12-31	3.4	3.49	—	3.5	0.010	1.18	0.0	0.49	15.73	0.01	2.292	5.94	0.89	8.8	90.3	0.9	-4.52	0.64	0.82	1.74	3.5	0.003	1.22	0.0	0.11	16.17	0.00	2.216	6.80	0.13	8.2	91.7	0.1	-0.26	1.24	0.65	0.83	1.48	7507	935	7	0	11	15	0	logfile
✔	7K4F	22667	2022-12-14	2020-09-15	3.75	4.23	—	4.2	0.012	1.38	0.0	0.06	12.35	0.01	2.231	4.24	1.50	12.1	87.9	0.0	-5.98	0.57	0.85	2.49	4.2	0.003	0.89	0.0	0.04	16.61	0.00	2.193	10.87	0.33	9.6	90.4	0.0	-1.34	3.60	0.62	0.85	1.92	19875	2456	8	0	6	0	0	logfile
✔	7APX	11859	2022-12-14	2020-10-20	3.4	4.19	—	4.0	0.006	0.76	0.0	0.05	16.32	0.00	2.090	9.44	9.74	6.3	93.6	0.1	-2.30	0.83	0.83	1.26	4.0	0.003	0.60	0.0	0.04	15.89	0.00	2.150	7.03	0.22	4.9	95.1	0.0	1.28	0.47	0.80	0.77	1.26	20552	2870	6	0	19	0	0	logfile
✔	7LBF	23253	2022-12-13	2021-01-07	2.8	3.23	—	3.1	0.003	0.50	0.0	0.04	12.77	0.00	2.098	3.74	0.00	2.4	97.6	0.0	0.66	0.76	0.83	3.83	3.1	0.006	0.69	0.0	0.05	15.83	0.00	2.048	9.54	2.34	3.8	96.2	0.0	0.31	1.43	0.72	0.82	3.29	15656	1923	15	0	29	0	0	logfile
✔	7LBE	23252	2022-12-13	2021-01-07	2.9	3.31	—	3.2	0.002	0.44	0.0	0.04	12.74	0.00	2.200	3.62	0.00	2.8	97.2	0.0	1.20	0.69	0.82	3.12	3.2	0.004	0.60	0.0	0.04	15.74	0.00	2.115	7.32	1.57	3.4	96.6	0.0	0.72	0.44	0.70	0.85	2.90	13511	1653	13	0	27	0	0	logfile
✔	7L7Q	23216	2022-12-11	2020-12-30	3.7	4.37	—	4.0	0.005	0.91	0.0	0.05	15.54	0.00	1.873	23.94	0.16	10.2	89.5	0.3	-4.40	0.84	0.81	0.86	4.0	0.004	0.96	0.0	0.04	17.68	0.00	2.111	22.88	0.47	7.7	92.3	0.0	-0.31	1.44	0.84	0.79	0.76	5619	687	3	0	0	0	0	logfile
✔	6YRF	10888	2022-12-15	2020-04-20	3.9	4.58	—	4.2	0.006	0.78	0.0	0.05	14.50	0.00	2.028	27.58	0.21	12.8	87.1	0.1	-3.65	0.91	0.84	1.12	4.2	0.003	0.70	0.0	0.04	15.83	0.00	2.083	15.55	0.21	9.7	90.3	0.0	-0.77	0.57	0.91	0.82	0.98	24828	3108	4	0	0	0	0	logfile
✔	7AHD	11783	2022-12-12	2020-09-24	3.4	3.48	3.35	3.4	0.008	1.10	0.0	0.05	13.49	0.00	2.215	8.95	0.79	3.8	96.2	0.0	-0.17	0.74	0.81	3.06	3.4	0.003	0.59	0.0	0.04	15.44	0.00	2.203	9.00	0.09	1.6	98.4	0.0	0.95	1.16	0.75	0.85	2.61	10562	1361	7	0	3	0	0	logfile
✘	6TRC	10558	2022-12-19	2019-12-18	2.98	3.06	—	3.1	0.010	1.16	0.0	0.07	19.32	0.02	1.220	9.53	1.42	7.9	92.1	0.0	-3.92	0.71	0.79	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75591	6849	99	0	402	651	0	logfile

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