Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SoA	25264	2023-04-20	2021-10-29	3.1	3.33	3.14	3.3	0.011	1.27	0.0	0.08	10.31	0.01	2.194	1.06	0.24	2.0	98.0	0.0	0.99	0.68	0.84	4.69	3.3	0.003	0.59	0.0	0.05	13.40	0.00	2.241	3.98	0.24	2.6	97.4	0.0	0.93	0.56	0.66	0.90	4.81	3850	477	5	0	6	0	0	logfile
✔	8GWo	34318	2023-04-26	2022-09-17	3.8	4.21	3.91	4.0	0.008	0.82	0.0	0.05	15.18	0.01	1.755	15.73	0.66	8.8	91.1	0.1	-2.55	0.81	0.82	1.08	4.0	0.003	0.64	0.0	0.04	15.57	0.00	2.121	12.36	0.35	7.3	92.7	0.0	-1.67	0.50	0.82	0.82	0.97	21880	2655	12	53	9	0	0	logfile
✔	7P9B	13261	2023-04-21	2021-07-26	2.45	2.64	2.53	2.6	0.008	0.76	0.0	0.05	10.07	0.01	1.733	7.36	0.93	2.5	97.5	0.0	-1.21	0.79	0.88	6.15	2.6	0.003	0.51	0.0	0.04	14.40	0.00	2.117	5.69	0.85	2.1	97.9	0.0	1.11	0.43	0.81	0.91	5.21	60290	7550	10	0	0	0	0	logfile
✔	7WS3	32742	2023-04-29	2022-01-28	3.6	4.00	—	3.8	0.004	0.65	0.0	0.05	13.11	0.00	2.202	7.83	0.03	3.2	96.8	0.0	-0.92	0.80	0.76	2.72	3.8	0.003	0.64	0.0	0.04	15.09	0.00	2.104	8.43	0.37	3.8	96.2	0.0	-0.48	1.30	0.83	0.83	2.31	30215	3811	27	0	54	0	0	logfile
✔	6QC7	4499	2023-04-23	2018-12-27	4.4	4.45	4.37	4.4	0.007	1.20	0.0	1.03	11.60	0.01	2.126	7.14	0.47	12.3	87.6	0.1	-4.14	0.62	0.75	—	4.4	0.009	1.72	0.0	0.31	13.71	0.01	2.045	19.68	0.03	11.0	89.0	0.0	-1.51	3.00	0.63	0.77	—	65353	8086	57	0	18	0	0	logfile
✔	7JJo	22357	2023-04-23	2020-07-27	2.6	2.72	—	2.6	0.003	0.48	0.0	0.04	14.21	0.00	2.102	3.07	1.78	2.0	98.0	0.0	-1.12	0.55	0.83	3.47	2.6	0.003	0.50	0.0	0.04	16.63	0.00	2.069	3.77	1.90	1.5	98.5	0.0	1.44	0.84	0.58	0.86	3.24	15641	1002	5	0	1	0	7749	logfile
✔	7F93	31496	2023-04-25	2021-07-03	3.6	3.95	—	4.0	0.007	1.26	0.0	0.05	16.99	0.01	2.293	3.35	4.00	2.8	97.2	0.0	-5.48	0.56	0.84	2.93	4.0	0.003	0.61	0.0	0.04	15.73	0.00	2.181	7.76	0.29	1.5	98.5	0.0	1.19	0.79	0.56	0.83	2.71	20808	2352	24	0	120	0	0	logfile
✔	7XRP	33416	2023-04-20	2022-05-11	3.88	4.07	3.83	4.0	0.008	1.14	0.0	0.08	14.63	0.02	2.261	4.57	0.45	8.4	91.6	0.0	-4.63	0.53	0.80	2.30	4.0	0.004	0.72	0.0	0.04	16.41	0.00	2.196	13.96	0.68	5.8	94.2	0.0	-3.10	0.68	0.53	0.80	1.97	4129	515	5	0	4	0	0	logfile
✔	7WS0	32739	2023-04-29	2022-01-28	3.2	3.66	—	3.5	0.004	0.62	0.0	0.05	13.22	0.00	2.225	5.96	0.00	3.1	96.9	0.0	-0.91	0.80	0.80	2.70	3.5	0.003	0.62	0.0	0.04	14.94	0.00	2.145	7.12	0.12	3.7	96.3	0.0	-0.39	0.56	0.78	0.85	2.61	30440	3817	30	0	66	0	0	logfile
✔	7P05	13144	2023-04-25	2021-06-29	3.13	3.16	—	3.3	0.008	0.87	0.0	0.04	13.66	0.01	1.997	7.44	0.09	4.1	95.9	0.0	0.57	0.66	0.82	3.58	3.3	0.004	0.54	0.0	0.04	14.62	0.00	1.976	5.82	0.00	4.0	96.0	0.0	1.12	0.78	0.67	0.84	3.24	21576	1353	1	0	3	0	10675	logfile
✔	7TZ6	26203	2023-04-22	2022-02-15	2.88	3.27	—	3.2	0.005	0.77	0.0	0.04	12.10	0.01	2.038	1.51	0.26	2.6	97.3	0.0	0.43	0.65	0.83	3.78	3.2	0.004	0.59	0.0	0.04	15.55	0.00	1.871	4.27	1.44	3.0	97.0	0.0	1.48	0.72	0.67	0.86	3.24	64906	4126	28	0	10	0	32164	logfile
✔	7ZGY	14715	2023-04-26	2022-04-04	2.54	3.09	5.67	3.1	0.025	0.90	0.0	0.27	14.44	0.01	1.605	24.14	0.00	10.2	89.5	0.2	-1.88	0.69	0.83	4.57	3.1	0.004	0.88	0.0	0.05	15.60	0.00	1.899	12.83	0.60	10.2	89.7	0.2	-1.80	0.23	0.68	0.87	4.49	21861	2847	6	0	21	0	0	logfile
✔	6QC5	4497	2023-04-23	2018-12-26	4.3	4.44	4.37	4.3	0.009	1.29	0.0	1.03	11.80	0.01	2.162	8.03	0.72	12.3	87.5	0.2	-4.12	0.64	0.77	—	4.3	0.009	1.72	0.0	0.31	13.58	0.01	1.296	20.13	0.01	10.9	89.1	0.0	-1.54	1.04	0.65	0.78	—	65691	8136	57	0	16	0	0	logfile
✔	6QC6	4498	2023-04-23	2018-12-27	4.1	4.24	4.40	4.2	0.006	1.19	0.0	1.03	11.45	0.01	2.082	6.24	0.55	10.3	89.6	0.1	-4.07	0.65	0.77	—	4.1	0.009	1.72	0.0	0.31	13.57	0.01	2.048	17.91	0.03	10.2	89.8	0.0	-1.43	1.06	0.66	0.79	—	65344	8085	58	0	18	0	0	logfile
✔	7WWi	32866	2023-04-29	2022-02-13	3.5	4.12	—	3.8	0.003	0.60	0.0	0.05	13.13	0.00	2.107	7.68	0.00	2.9	97.1	0.0	0.14	0.84	0.86	2.48	3.8	0.004	0.61	0.0	0.04	14.73	0.00	2.156	9.47	0.30	4.2	95.8	0.0	0.09	0.40	0.84	0.87	2.48	30237	3791	26	0	43	0	0	logfile
✔	7WAH	32385	2023-04-22	2021-12-14	2.45	2.65	—	2.8	0.002	0.51	0.0	0.04	11.56	0.00	2.239	7.07	0.55	1.7	98.3	0.0	0.28	0.64	0.80	3.72	2.8	0.002	0.53	0.0	0.04	15.46	0.00	2.081	7.50	2.11	2.3	97.7	0.0	0.63	1.00	0.63	0.80	3.25	13217	1473	3	62	4	0	0	logfile
✔	7WS5	32744	2023-04-29	2022-01-28	3.7	4.15	—	3.9	0.003	0.61	0.0	0.05	13.21	0.00	2.168	9.14	0.09	2.5	97.5	0.1	-0.07	0.83	0.84	1.95	3.8	0.004	0.61	0.0	0.04	14.76	0.00	2.116	11.11	0.12	4.2	95.8	0.0	-0.08	1.28	0.84	0.86	2.11	30228	3800	26	0	38	0	0	logfile
✔	8FM9	29289	2023-04-28	2022-12-22	3.2	3.48	3.49	3.6	0.002	0.45	0.0	0.04	11.34	0.00	1.810	6.85	0.00	2.7	97.3	0.0	0.35	0.46	0.71	2.23	3.5	0.003	0.60	0.0	0.04	13.56	0.00	1.971	7.01	0.29	4.3	95.6	0.2	1.29	1.47	0.48	0.78	2.50	76764	7692	24	0	0	0	29916	logfile
✔	7JRJ	22446	2023-04-26	2020-08-12	3.03	2.86	—	2.8	0.006	0.60	0.0	0.04	11.33	0.00	2.210	5.16	0.04	4.6	95.4	0.0	-2.44	0.75	0.81	3.28	2.6	0.005	0.62	0.0	0.04	14.01	0.00	2.121	5.98	0.13	3.8	96.2	0.0	0.36	0.61	0.77	0.84	2.83	22924	2931	15	0	128	0	0	logfile
✔	7WS4	32743	2023-04-27	2022-01-28	3.7	4.11	—	3.9	0.004	0.62	0.0	0.05	13.41	0.00	2.110	9.30	0.00	3.5	96.5	0.0	0.09	0.83	0.85	2.54	3.9	0.007	0.69	0.0	0.05	14.93	0.00	2.105	10.56	0.31	4.4	95.6	0.0	-0.12	0.34	0.84	0.87	2.50	26566	3327	22	0	38	0	0	logfile

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