Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6C3o	7338	2021-09-06	2018-01-10	3.9	3.58	—	3.6	0.006	0.92	0.0	0.05	10.43	0.00	1.661	15.20	0.32	7.4	92.6	0.0	-3.06	0.40	0.56	1.23	3.5	0.006	0.88	0.0	0.05	15.83	0.01	1.958	16.43	0.98	5.9	94.1	0.0	-0.18	3.06	0.65	0.73	1.42	49055	6472	16	0	23	0	0	logfile
✔	6M99	9050	2021-09-07	2018-08-23	3.4	3.37	—	3.3	0.007	0.97	0.0	0.06	10.05	0.01	2.186	6.86	0.38	5.8	94.2	0.0	-4.38	0.27	0.84	3.06	3.3	0.004	0.78	0.0	0.05	15.18	0.01	2.043	13.92	0.78	5.6	94.4	0.0	-0.50	0.73	0.28	0.86	2.31	101389	13152	14	0	2	0	0	logfile
✔	6AHC	9623	2021-09-06	2018-08-17	3.45	3.82	—	3.8	0.008	1.06	0.0	0.06	10.67	0.01	2.268	3.08	0.66	7.9	92.0	0.1	-4.33	0.58	0.77	2.27	3.8	0.005	0.86	0.0	0.05	15.15	0.01	2.069	9.33	0.54	7.7	92.3	0.0	-1.12	3.63	0.67	0.85	1.86	46106	6052	8	0	0	0	0	logfile
✘	5XNM	6742	2021-09-06	2017-05-23	3.2	3.28	—	3.3	0.010	1.40	0.0	0.07	15.91	0.02	1.205	9.85	0.03	2.3	97.7	0.0	-2.60	0.71	0.82	3.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92842	8712	90	0	486	0	0	logfile
✔	6E2R	8969	2021-09-05	2018-07-12	2.8	2.92	—	2.9	0.016	0.92	0.0	0.06	14.23	0.01	2.216	2.61	4.65	3.3	96.7	0.0	-3.68	0.72	0.85	5.02	2.9	0.003	0.62	0.0	0.04	14.99	0.00	2.115	3.40	1.09	2.5	97.5	0.0	-1.33	1.30	0.74	0.87	5.04	183180	11340	60	0	0	0	90180	logfile
✔	6o1V	0606	2021-09-03	2019-02-21	3.2	3.50	—	3.6	0.016	1.83	0.0	0.21	13.60	0.01	1.933	6.26	0.48	4.7	95.3	0.0	-2.71	0.46	0.70	3.04	3.6	0.003	0.71	0.0	0.07	16.34	0.00	1.988	7.94	0.19	2.1	97.9	0.0	0.73	0.77	0.60	0.83	2.58	9711	1179	3	0	28	0	0	logfile
✔	5W9o	8790	2021-09-05	2017-06-23	4.5	4.59	4.45	4.5	0.013	1.67	0.0	0.08	10.49	0.01	1.325	7.67	0.08	3.9	95.4	0.7	1.29	0.73	0.77	—	4.4	0.006	1.18	12.0	0.07	13.21	0.01	1.809	28.27	0.11	7.4	91.9	0.7	-0.37	8.39	0.60	0.53	—	32958	4257	12	0	0	0	0	logfile
✔	6UKJ	20806	2021-09-02	2019-10-05	3.3	3.53	3.32	3.4	0.017	1.38	0.0	0.19	14.30	0.01	2.114	6.29	0.79	4.5	95.1	0.3	-3.21	0.62	0.81	3.08	3.4	0.003	0.66	0.0	0.04	16.03	0.00	2.115	13.02	0.40	4.0	96.0	0.0	0.30	1.54	0.65	0.82	2.31	4625	582	4	0	1	0	0	logfile
✔	6C14	7328	2021-09-03	2018-01-03	4.5	4.15	—	4.0	0.005	1.04	0.0	0.06	9.46	0.01	2.263	5.29	0.27	6.8	93.2	0.0	-4.44	0.55	0.70	—	4.0	0.005	0.82	0.0	0.05	12.11	0.01	2.092	22.47	0.27	5.2	94.8	0.0	-1.88	2.66	0.57	0.72	—	6746	860	4	0	0	0	0	logfile
✔	6JPU	9871	2021-09-05	2019-03-28	4.27	5.69	—	6.0	0.007	1.03	0.0	0.06	17.27	0.01	1.984	69.43	9.58	9.8	90.1	0.2	-3.97	0.80	0.76	—	5.2	0.005	0.89	0.0	0.05	13.59	0.01	1.796	135.54	0.00	11.9	88.0	0.1	-2.09	1.27	0.81	0.80	—	30378	3462	6	0	0	0	2610	logfile
✔	6o5B	0626	2021-09-03	2019-03-01	3.6	3.80	—	3.8	0.007	1.13	0.0	0.06	11.13	0.01	2.307	4.39	0.41	6.1	93.9	0.0	-4.21	0.63	0.79	2.85	3.7	0.006	0.80	0.0	0.05	15.08	0.01	2.166	9.45	0.62	6.8	93.2	0.0	-0.39	0.84	0.64	0.81	1.80	13169	1620	13	0	1	0	0	logfile
✔	6RJ9	4900	2021-09-03	2019-04-26	3.2	3.37	—	3.3	0.006	0.78	0.0	0.05	15.21	0.01	2.292	2.59	0.28	6.7	93.3	0.0	-3.87	0.67	0.86	2.60	3.3	0.003	0.57	0.0	0.04	16.27	0.00	2.220	5.27	0.09	3.8	96.2	0.0	-0.23	0.40	0.68	0.87	1.87	11874	1202	5	97	0	0	0	logfile
✔	5W9J	8785	2021-09-05	2017-06-23	4.8	4.91	5.09	4.7	0.013	1.58	0.0	0.07	11.98	0.02	1.881	5.22	0.90	4.0	94.8	1.2	0.53	0.78	0.75	—	4.7	0.003	0.67	0.0	0.04	12.52	0.00	2.158	12.22	0.00	5.1	94.7	0.1	0.33	1.35	0.74	0.68	—	32958	4257	12	0	0	0	0	logfile
✔	6S6V	10107	2021-09-03	2019-07-03	3.5	3.70	—	3.5	0.009	0.91	0.0	0.06	15.37	0.01	1.827	6.23	0.24	7.8	92.2	0.0	-3.61	0.86	0.86	2.78	3.5	0.002	0.56	0.0	0.04	16.09	0.00	1.816	8.22	0.24	4.4	95.6	0.0	-0.04	0.47	0.86	0.86	2.79	11820	1498	8	0	8	0	0	logfile
✘	6J6Q	0692	2021-09-05	2019-01-15	3.7	3.85	—	3.7	0.008	0.99	0.0	0.06	14.74	0.01	1.463	18.04	2.93	4.9	94.2	0.9	-3.65	0.62	0.66	1.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80535	9167	50	549	15	0	0	logfile
✔	6UZZ	20965	2021-09-03	2019-11-16	3.1	3.48	—	3.4	0.009	0.92	0.0	0.06	10.61	0.01	2.325	2.53	0.24	1.8	98.0	0.2	-4.22	0.60	0.81	3.12	3.4	0.003	0.56	0.0	0.04	14.99	0.00	2.250	5.35	0.18	2.4	97.6	0.0	2.83	0.65	0.68	0.86	1.77	15832	1984	12	0	8	0	0	logfile
✔	6oXL	20220	2021-09-03	2019-05-13	3.5	3.82	3.60	3.7	0.010	1.08	0.0	0.06	9.46	0.01	2.236	6.62	0.06	5.6	94.4	0.0	-5.46	0.81	0.84	3.05	3.7	0.006	0.85	0.0	0.04	13.56	0.00	2.170	9.86	0.13	3.2	96.8	0.0	-0.40	1.36	0.80	0.81	1.60	14413	1808	6	0	7	0	0	logfile
✔	6T72	10389	2021-09-04	2019-10-21	3.7	3.79	—	3.8	0.013	1.64	0.0	0.11	14.69	0.02	2.167	4.27	0.00	2.1	97.9	0.0	-2.53	0.76	0.87	2.40	3.7	0.004	0.60	0.0	0.04	15.01	0.00	2.077	3.64	0.26	3.2	96.8	0.0	1.38	1.25	0.78	0.88	1.84	26278	3388	14	0	210	0	0	logfile
✔	6BAA	7073	2021-09-06	2017-10-12	3.63	3.87	—	3.8	0.007	1.28	0.0	0.07	11.10	0.01	2.235	11.79	1.01	4.1	95.9	0.0	-1.13	0.61	0.64	0.78	3.8	0.009	0.97	1.0	0.05	14.83	0.00	2.207	11.57	0.70	3.4	96.6	0.0	1.44	1.34	0.65	0.79	1.38	44852	6552	16	0	8	0	0	logfile
✔	6MET	9109	2021-09-03	2018-09-07	4.5	4.68	4.22	4.4	0.006	0.99	0.0	0.15	10.66	0.01	1.985	11.91	1.37	8.0	91.5	0.5	-4.19	0.58	0.54	—	4.4	0.003	0.83	0.0	0.07	11.54	0.00	2.159	14.72	0.00	7.3	92.7	0.0	-1.62	1.33	0.69	0.81	—	8911	1074	5	0	32	0	0	logfile

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