Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KAL	22774	2022-07-03	2020-10-01	4.0	4.57	4.10	4.2	0.002	0.51	0.0	0.04	11.87	0.00	2.262	5.92	0.00	2.6	97.3	0.1	-0.72	0.63	0.82	—	4.2	0.003	0.68	0.0	0.04	14.44	0.00	2.240	9.07	0.28	3.1	96.8	0.1	1.85	0.59	0.63	0.83	—	10789	1429	7	0	0	0	0	logfile
✔	7KAJ	22772	2022-07-03	2020-10-01	3.1	3.82	3.25	3.5	0.003	0.54	0.0	0.04	12.81	0.00	2.264	3.91	0.00	3.1	96.9	0.0	-1.18	0.67	0.85	2.16	3.5	0.003	0.58	0.0	0.04	14.47	0.00	2.204	5.07	0.09	2.2	97.8	0.0	2.14	0.37	0.65	0.85	1.79	10712	1343	7	0	56	0	0	logfile
✔	7KAi	22771	2022-07-03	2020-10-01	3.2	3.86	3.25	3.5	0.003	0.53	0.0	0.04	12.28	0.00	2.229	4.28	0.00	3.6	96.4	0.0	-1.28	0.67	0.85	2.59	3.5	0.002	0.55	0.0	0.04	14.16	0.00	2.188	5.07	0.00	2.7	97.3	0.0	2.10	0.39	0.67	0.88	1.73	10718	1343	7	0	56	0	0	logfile
✔	6SWA	10321	2022-07-06	2019-09-20	3.1	3.53	—	3.4	0.002	0.45	0.0	0.03	13.70	0.00	1.115	10.87	0.43	4.2	95.6	0.2	-2.39	0.68	0.83	2.07	3.4	0.004	0.58	0.0	0.03	15.63	0.00	1.858	12.15	0.74	5.4	94.6	0.0	-0.42	1.44	0.70	0.87	1.92	138160	6739	60	3888	250	0	0	logfile
✔	7BY0	30239	2022-07-03	2020-04-21	4.5	5.50	—	4.5	0.008	0.97	0.0	0.05	30.91	0.01	1.950	11.25	0.15	3.1	96.9	0.0	-3.59	0.92	0.87	—	4.5	0.005	0.74	0.0	0.04	30.78	0.01	2.039	25.02	0.00	5.6	94.4	0.0	-0.56	1.30	0.92	0.86	—	12693	868	12	286	0	0	0	logfile
✘	7D99	30617	2022-07-04	2020-10-12	2.9	3.02	—	3.1	0.009	1.09	0.0	0.06	9.63	0.01	2.187	2.92	0.41	4.7	95.1	0.1	-5.36	0.71	0.85	3.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13800	1782	8	0	14	0	0	logfile
✔	7KAT	22783	2022-07-03	2020-10-01	4.4	5.04	4.41	4.5	0.002	0.51	0.0	0.04	11.32	0.00	2.185	6.94	0.00	1.9	98.1	0.0	-0.63	0.65	0.83	—	4.5	0.002	0.57	0.0	0.04	12.07	0.00	2.070	9.45	0.00	2.1	97.9	0.0	2.26	1.32	0.65	0.85	—	10431	1340	6	0	0	0	0	logfile
✔	7CRR	30457	2022-07-05	2020-08-14	3.48	3.61	—	3.5	0.007	0.74	0.0	0.04	27.70	0.00	2.037	12.49	1.56	10.2	89.8	0.0	-5.14	0.74	0.82	2.82	3.5	0.004	0.58	0.0	0.03	27.87	0.00	2.200	8.42	0.36	5.8	94.2	0.0	-1.45	0.43	0.77	0.86	2.42	14839	1002	11	336	4	0	0	logfile
✔	7CKW	30392	2022-07-04	2020-07-20	3.22	3.34	—	3.3	0.002	0.48	0.0	0.04	13.74	0.00	2.178	16.15	1.74	3.0	97.0	0.0	-3.30	0.58	0.71	1.74	3.3	0.004	0.71	0.0	0.04	16.30	0.01	2.012	22.64	0.81	5.0	95.0	0.0	-1.08	0.66	0.63	0.79	2.01	8103	1035	5	0	2	0	0	logfile
✔	7CKZ	30395	2022-07-04	2020-07-20	3.1	3.23	—	3.2	0.003	0.52	0.0	0.04	13.75	0.00	1.570	22.75	0.93	3.1	96.9	0.0	-3.38	0.59	0.71	2.01	3.2	0.008	1.05	0.0	0.04	16.55	0.01	1.845	26.55	0.58	4.8	95.2	0.0	-1.24	0.63	0.64	0.79	2.53	8133	1037	5	0	3	0	0	logfile
✘	7CKY	30394	2022-07-04	2020-07-20	3.2	3.28	—	3.3	0.003	0.48	0.0	0.04	14.59	0.00	2.154	17.54	1.51	4.3	95.7	0.0	-2.84	0.46	0.50	0.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8128	1038	5	0	2	0	0	logfile
✔	7CKX	30393	2022-07-04	2020-07-20	3.54	3.65	—	3.6	0.003	0.50	0.0	0.04	13.48	0.00	2.160	12.95	2.09	3.2	96.8	0.0	-3.07	0.59	0.71	1.45	3.6	0.014	1.33	2.0	0.05	16.23	0.01	1.838	31.01	0.46	3.8	96.2	0.0	-1.57	1.21	0.61	0.75	1.73	8112	1035	5	0	2	0	0	logfile
✔	7CRQ	30456	2022-07-06	2020-08-14	3.15	3.31	—	3.2	0.006	0.72	0.0	0.04	26.23	0.00	1.131	7.71	1.36	8.7	91.2	0.1	-5.19	0.75	0.81	2.87	3.2	0.003	0.61	0.0	0.04	26.75	0.00	2.075	6.29	0.19	8.3	91.7	0.0	-2.81	1.15	0.77	0.83	2.36	16633	1226	14	336	8	0	0	logfile
✔	7CRP	30455	2022-07-05	2020-08-14	3.2	3.29	—	3.3	0.006	0.74	0.0	0.04	27.13	0.01	1.478	6.64	0.96	8.0	91.8	0.1	-5.47	0.73	0.83	3.50	3.3	0.004	0.64	0.0	0.04	27.39	0.01	2.201	5.26	0.24	6.9	93.1	0.0	-3.36	0.33	0.75	0.86	2.88	14833	1002	11	336	4	0	0	logfile
✔	7KAo	22778	2022-07-03	2020-10-01	4.0	4.59	4.08	4.2	0.003	0.53	0.0	0.04	11.87	0.00	2.202	7.75	0.00	2.3	97.7	0.0	-1.25	0.65	0.84	—	4.2	0.007	0.80	0.0	0.04	14.15	0.00	2.105	14.70	0.45	3.8	96.2	0.0	1.16	1.25	0.66	0.85	—	10502	1349	6	0	0	0	0	logfile
✔	7LLA	23413	2022-07-06	2021-02-03	2.97	3.51	—	3.4	0.006	0.96	0.0	0.06	14.55	0.01	2.260	6.11	0.59	4.6	95.4	0.0	-2.37	0.74	0.79	2.24	3.4	0.006	0.71	0.0	0.05	15.99	0.00	2.066	10.41	1.13	4.7	95.3	0.0	-0.75	0.45	0.66	0.76	2.26	31900	4084	8	0	12	0	0	logfile
✔	7AoC	11840	2022-07-06	2020-10-14	3.84	3.91	—	3.9	0.007	0.88	0.0	0.05	15.06	0.01	1.929	15.92	0.33	11.2	88.5	0.3	-4.08	0.70	0.81	1.92	3.9	0.008	0.97	1.0	0.05	17.00	0.01	1.751	17.01	0.33	8.5	91.5	0.1	-1.79	0.62	0.70	0.81	1.45	29724	3746	17	0	6	0	0	logfile
✘	6LW1	30002	2022-07-03	2020-02-06	2.8	2.98	—	3.1	0.009	0.78	0.0	0.05	17.46	0.00	1.315	11.43	7.10	10.3	89.2	0.5	-3.85	0.67	0.80	2.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12412	1526	4	0	2	0	0	logfile
✘	6TRA	10557	2022-07-05	2019-12-18	2.85	3.02	—	3.0	0.006	0.96	0.0	0.04	18.82	0.02	1.225	8.56	0.05	4.7	95.3	0.0	-3.41	0.73	0.83	4.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25197	2283	33	0	134	217	0	logfile
✔	7CZ5	30505	2022-07-03	2020-09-07	2.6	2.89	—	2.9	0.004	0.69	0.0	0.05	13.25	0.00	2.186	6.39	0.00	3.3	96.7	0.0	-2.04	0.60	0.80	4.16	2.9	0.003	0.55	0.0	0.04	15.98	0.00	2.155	6.08	1.46	2.9	97.1	0.0	0.19	0.44	0.62	0.83	2.89	8336	1046	11	0	3	3	0	logfile

• ← previous
• Page 2 of 392
• next →