Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LKP	23409	2023-11-16	2021-02-02	3.27	3.86	—	3.8	0.006	0.99	0.0	0.53	16.73	0.01	1.954	19.44	0.60	5.7	94.3	0.1	-0.89	0.62	0.74	1.42	3.8	0.003	0.85	0.0	0.08	17.16	0.00	2.139	9.28	0.30	4.2	95.7	0.1	0.10	1.19	0.73	0.83	1.78	15789	1941	4	0	29	0	0	logfile
✔	8E2K	27841	2023-11-21	2022-08-15	3.21	3.74	3.62	3.3	0.004	0.61	0.0	0.04	15.39	0.01	1.972	6.69	0.83	2.3	97.7	0.0	1.10	0.70	0.67	1.38	3.3	0.003	0.58	0.0	0.04	15.56	0.00	1.883	9.69	0.28	3.5	96.4	0.0	1.02	1.42	0.72	0.73	1.33	96785	6160	5	0	0	0	48882	logfile
✔	7K0N	22604	2023-11-17	2020-09-04	3.1	3.55	—	3.5	0.004	0.69	0.0	0.04	13.94	0.00	2.227	6.22	0.32	2.5	97.5	0.0	0.72	0.73	0.82	2.88	3.5	0.002	0.48	0.0	0.04	15.30	0.00	2.253	5.17	0.05	2.0	98.0	0.0	1.15	1.06	0.72	0.84	2.63	18470	2340	14	0	18	0	0	logfile
✔	6V22	21025	2023-11-22	2019-11-22	3.2	3.50	—	3.4	0.014	1.41	0.0	0.06	17.77	0.02	2.257	5.84	0.21	4.3	95.7	0.0	-3.73	0.73	0.86	3.42	3.4	0.004	0.55	0.0	0.04	16.13	0.00	2.127	7.99	0.15	3.9	96.1	0.0	0.48	1.56	0.73	0.87	3.25	37004	4380	16	0	100	0	0	logfile
✔	8F4N	28855	2023-11-16	2022-11-11	2.95	3.15	3.04	3.2	0.004	0.55	0.0	0.04	9.96	0.00	2.278	8.28	2.12	1.9	98.1	0.0	2.00	0.72	0.80	3.23	3.2	0.003	0.54	0.0	0.04	15.74	0.00	2.085	9.21	2.18	1.4	98.6	0.0	2.01	1.26	0.69	0.85	2.77	15574	2043	2	0	0	0	0	logfile
✔	7M1P	23617	2023-11-15	2021-03-14	3.6	3.93	—	3.9	0.003	0.61	0.0	0.04	13.10	0.00	2.226	8.07	0.00	9.4	90.4	0.2	-0.96	0.68	0.74	1.70	3.8	0.003	0.63	0.0	0.04	14.49	0.00	2.182	9.45	0.27	10.5	89.4	0.1	-1.10	0.32	0.69	0.76	1.15	13511	1938	5	0	13	1	0	logfile
✔	7ZPL	14857	2023-11-17	2022-04-27	3.12	3.95	3.13	3.2	0.002	0.39	0.0	0.04	14.05	0.00	2.178	5.65	0.00	2.2	97.8	0.0	0.80	0.92	0.85	2.46	3.2	0.003	0.58	0.0	0.04	15.28	0.00	2.144	9.22	0.19	3.0	97.0	0.0	1.02	4.21	0.93	0.89	2.34	19919	2422	9	24	1	0	0	logfile
✔	7TCP	25816	2023-11-16	2021-12-27	3.84	3.97	—	3.9	0.002	0.37	0.0	0.03	9.57	0.00	2.327	4.21	1.26	2.8	97.2	0.0	2.66	0.70	0.81	2.29	3.9	0.003	0.50	0.0	0.04	12.75	0.00	2.113	5.39	0.60	3.3	96.7	0.0	2.51	0.36	0.71	0.83	2.44	14992	1912	12	0	12	0	0	logfile
✔	6KPJ	0748	2023-11-15	2019-08-15	2.56	3.82	—	3.3	0.014	0.94	0.0	0.06	12.22	0.00	1.218	8.38	0.00	6.7	93.3	0.0	-4.33	0.85	0.86	3.83	3.3	0.005	0.73	1.0	0.13	14.32	0.00	1.110	6.83	0.50	3.1	96.9	0.0	0.92	0.69	0.85	0.87	3.62	62845	3936	24	0	48	0	31225	logfile
✔	6MRC	9195	2023-11-17	2018-10-12	3.08	3.40	—	3.4	0.007	0.81	0.0	0.07	10.51	0.00	1.988	27.58	0.18	7.5	92.3	0.2	-2.93	0.81	0.83	3.65	3.3	0.004	0.64	0.0	0.07	13.87	0.00	1.830	33.35	0.30	6.9	93.0	0.1	0.01	0.64	0.81	0.86	3.39	69132	8792	56	0	28	98	2954	logfile
✔	6o9Z	0664	2023-11-19	2019-03-15	3.03	3.58	—	3.6	0.008	0.93	0.0	0.05	12.41	0.01	2.192	12.43	0.48	4.2	95.8	0.0	-3.03	0.65	0.81	2.65	3.5	0.007	0.80	0.0	0.05	15.33	0.00	2.118	13.48	1.55	6.1	93.9	0.0	-0.19	1.92	0.63	0.82	2.47	25788	3605	12	0	0	0	0	logfile
✔	7UK5	26575	2023-11-14	2022-03-31	2.76	3.16	2.85	3.1	0.004	0.58	0.0	0.04	12.96	0.01	2.139	7.69	0.00	3.1	96.9	0.0	1.44	0.62	0.85	3.74	3.1	0.002	0.51	0.0	0.04	14.52	0.00	2.343	8.62	0.95	2.3	97.7	0.0	2.74	0.32	0.53	0.82	3.12	8000	1036	5	0	4	0	0	logfile
✔	8F3E	28848	2023-11-18	2022-11-10	3.09	3.38	3.21	3.4	0.003	0.52	0.0	0.04	9.85	0.00	2.213	7.20	2.91	1.9	98.1	0.0	1.77	0.61	0.64	1.05	3.4	0.003	0.59	0.0	0.04	15.62	0.00	2.070	10.09	0.40	1.8	98.2	0.0	1.68	1.75	0.63	0.80	1.92	23627	3095	3	0	0	0	0	logfile
✔	8F56	28861	2023-11-16	2022-11-11	2.98	3.18	3.09	3.2	0.004	0.56	0.0	0.04	9.89	0.00	2.200	9.91	2.64	2.2	97.8	0.0	1.81	0.68	0.75	1.96	3.2	0.003	0.58	0.0	0.04	16.16	0.00	2.177	10.36	3.00	1.8	98.2	0.0	1.79	1.29	0.70	0.86	2.19	15631	2039	2	0	0	0	0	logfile
✔	6KPi	0747	2023-11-15	2019-08-15	2.43	3.50	—	3.0	0.008	0.67	0.0	0.06	11.99	0.00	1.974	5.19	0.00	7.1	92.9	0.0	-4.39	0.85	0.88	4.58	3.0	0.005	0.78	3.0	0.13	14.43	0.00	1.988	5.83	0.62	3.5	96.5	0.0	1.23	0.72	0.85	0.89	4.30	62209	3936	24	0	24	0	31225	logfile
✔	7UKC	26576	2023-11-14	2022-04-01	3.0	3.39	2.98	3.3	0.006	0.67	0.0	0.04	12.54	0.00	2.127	8.37	0.24	3.1	96.9	0.0	0.47	0.66	0.87	3.11	3.3	0.003	0.59	0.0	0.04	15.43	0.00	2.216	8.80	1.54	2.7	97.3	0.0	1.94	0.38	0.66	0.86	2.76	8000	1036	6	0	4	0	0	logfile
✔	8SBD	40305	2023-11-14	2023-04-03	3.2	3.26	4.77	3.7	0.003	0.73	0.0	0.04	12.98	0.00	2.203	18.83	5.97	6.2	93.8	0.0	-4.19	0.70	0.71	2.96	3.7	0.004	0.68	0.0	0.05	15.43	0.00	1.888	27.68	0.56	11.5	88.5	0.0	-4.15	1.07	0.72	0.74	3.13	8864	584	32	0	0	0	4280	logfile
✔	8AGC	15420	2023-11-17	2022-07-19	3.1	3.40	3.13	3.3	0.009	1.06	0.0	0.06	16.26	0.01	2.139	7.10	3.53	4.8	95.1	0.1	-1.13	0.77	0.89	3.83	3.3	0.003	0.60	0.0	0.04	15.87	0.00	2.130	5.49	0.05	2.8	97.2	0.0	0.62	1.02	0.77	0.91	3.54	17764	2152	20	0	33	0	0	logfile
✔	6PZ8	20527	2023-11-20	2019-07-31	4.19	4.96	4.49	4.4	0.018	1.82	0.0	0.10	11.12	0.01	2.247	1.37	0.30	3.2	96.2	0.6	0.33	0.75	0.57	—	4.2	0.005	0.86	0.0	0.05	13.15	0.01	2.110	30.72	0.00	8.1	91.6	0.3	-1.52	1.13	0.77	0.66	—	28683	3585	42	0	78	0	0	logfile
✔	7SL1	25188	2023-11-19	2021-10-22	3.4	3.69	—	3.6	0.002	0.60	0.0	0.04	13.62	0.00	2.186	10.54	0.00	7.8	92.0	0.2	-1.04	0.80	0.79	3.27	3.5	0.003	0.62	0.0	0.04	15.46	0.00	2.117	12.23	0.06	8.2	91.8	0.0	-1.07	0.43	0.82	0.85	2.91	13830	1714	6	0	0	0	0	logfile

• ← previous
• Page 2 of 528
• next →