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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7LKP | 23409 | 2023-11-16 | 2021-02-02 | 3.27 | 3.86 | — | 3.8 | 0.006 | 0.99 | 0.0 | 0.53 | 16.73 | 0.01 | 1.954 | 19.44 | 0.60 | 5.7 | 94.3 | 0.1 | -0.89 | 0.62 | 0.74 | 1.42 | 3.8 | 0.003 | 0.85 | 0.0 | 0.08 | 17.16 | 0.00 | 2.139 | 9.28 | 0.30 | 4.2 | 95.7 | 0.1 | 0.10 | 1.19 | 0.73 | 0.83 | 1.78 | 15789 | 1941 | 4 | 0 | 29 | 0 | 0 | logfile |
✔ | 8E2K | 27841 | 2023-11-21 | 2022-08-15 | 3.21 | 3.74 | 3.62 | 3.3 | 0.004 | 0.61 | 0.0 | 0.04 | 15.39 | 0.01 | 1.972 | 6.69 | 0.83 | 2.3 | 97.7 | 0.0 | 1.10 | 0.70 | 0.67 | 1.38 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 15.56 | 0.00 | 1.883 | 9.69 | 0.28 | 3.5 | 96.4 | 0.0 | 1.02 | 1.42 | 0.72 | 0.73 | 1.33 | 96785 | 6160 | 5 | 0 | 0 | 0 | 48882 | logfile |
✔ | 7K0N | 22604 | 2023-11-17 | 2020-09-04 | 3.1 | 3.55 | — | 3.5 | 0.004 | 0.69 | 0.0 | 0.04 | 13.94 | 0.00 | 2.227 | 6.22 | 0.32 | 2.5 | 97.5 | 0.0 | 0.72 | 0.73 | 0.82 | 2.88 | 3.5 | 0.002 | 0.48 | 0.0 | 0.04 | 15.30 | 0.00 | 2.253 | 5.17 | 0.05 | 2.0 | 98.0 | 0.0 | 1.15 | 1.06 | 0.72 | 0.84 | 2.63 | 18470 | 2340 | 14 | 0 | 18 | 0 | 0 | logfile |
✔ | 6V22 | 21025 | 2023-11-22 | 2019-11-22 | 3.2 | 3.50 | — | 3.4 | 0.014 | 1.41 | 0.0 | 0.06 | 17.77 | 0.02 | 2.257 | 5.84 | 0.21 | 4.3 | 95.7 | 0.0 | -3.73 | 0.73 | 0.86 | 3.42 | 3.4 | 0.004 | 0.55 | 0.0 | 0.04 | 16.13 | 0.00 | 2.127 | 7.99 | 0.15 | 3.9 | 96.1 | 0.0 | 0.48 | 1.56 | 0.73 | 0.87 | 3.25 | 37004 | 4380 | 16 | 0 | 100 | 0 | 0 | logfile |
✔ | 8F4N | 28855 | 2023-11-16 | 2022-11-11 | 2.95 | 3.15 | 3.04 | 3.2 | 0.004 | 0.55 | 0.0 | 0.04 | 9.96 | 0.00 | 2.278 | 8.28 | 2.12 | 1.9 | 98.1 | 0.0 | 2.00 | 0.72 | 0.80 | 3.23 | 3.2 | 0.003 | 0.54 | 0.0 | 0.04 | 15.74 | 0.00 | 2.085 | 9.21 | 2.18 | 1.4 | 98.6 | 0.0 | 2.01 | 1.26 | 0.69 | 0.85 | 2.77 | 15574 | 2043 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M1P | 23617 | 2023-11-15 | 2021-03-14 | 3.6 | 3.93 | — | 3.9 | 0.003 | 0.61 | 0.0 | 0.04 | 13.10 | 0.00 | 2.226 | 8.07 | 0.00 | 9.4 | 90.4 | 0.2 | -0.96 | 0.68 | 0.74 | 1.70 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 14.49 | 0.00 | 2.182 | 9.45 | 0.27 | 10.5 | 89.4 | 0.1 | -1.10 | 0.32 | 0.69 | 0.76 | 1.15 | 13511 | 1938 | 5 | 0 | 13 | 1 | 0 | logfile |
✔ | 7ZPL | 14857 | 2023-11-17 | 2022-04-27 | 3.12 | 3.95 | 3.13 | 3.2 | 0.002 | 0.39 | 0.0 | 0.04 | 14.05 | 0.00 | 2.178 | 5.65 | 0.00 | 2.2 | 97.8 | 0.0 | 0.80 | 0.92 | 0.85 | 2.46 | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 15.28 | 0.00 | 2.144 | 9.22 | 0.19 | 3.0 | 97.0 | 0.0 | 1.02 | 4.21 | 0.93 | 0.89 | 2.34 | 19919 | 2422 | 9 | 24 | 1 | 0 | 0 | logfile |
✔ | 7TCP | 25816 | 2023-11-16 | 2021-12-27 | 3.84 | 3.97 | — | 3.9 | 0.002 | 0.37 | 0.0 | 0.03 | 9.57 | 0.00 | 2.327 | 4.21 | 1.26 | 2.8 | 97.2 | 0.0 | 2.66 | 0.70 | 0.81 | 2.29 | 3.9 | 0.003 | 0.50 | 0.0 | 0.04 | 12.75 | 0.00 | 2.113 | 5.39 | 0.60 | 3.3 | 96.7 | 0.0 | 2.51 | 0.36 | 0.71 | 0.83 | 2.44 | 14992 | 1912 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 6KPJ | 0748 | 2023-11-15 | 2019-08-15 | 2.56 | 3.82 | — | 3.3 | 0.014 | 0.94 | 0.0 | 0.06 | 12.22 | 0.00 | 1.218 | 8.38 | 0.00 | 6.7 | 93.3 | 0.0 | -4.33 | 0.85 | 0.86 | 3.83 | 3.3 | 0.005 | 0.73 | 1.0 | 0.13 | 14.32 | 0.00 | 1.110 | 6.83 | 0.50 | 3.1 | 96.9 | 0.0 | 0.92 | 0.69 | 0.85 | 0.87 | 3.62 | 62845 | 3936 | 24 | 0 | 48 | 0 | 31225 | logfile |
✔ | 6MRC | 9195 | 2023-11-17 | 2018-10-12 | 3.08 | 3.40 | — | 3.4 | 0.007 | 0.81 | 0.0 | 0.07 | 10.51 | 0.00 | 1.988 | 27.58 | 0.18 | 7.5 | 92.3 | 0.2 | -2.93 | 0.81 | 0.83 | 3.65 | 3.3 | 0.004 | 0.64 | 0.0 | 0.07 | 13.87 | 0.00 | 1.830 | 33.35 | 0.30 | 6.9 | 93.0 | 0.1 | 0.01 | 0.64 | 0.81 | 0.86 | 3.39 | 69132 | 8792 | 56 | 0 | 28 | 98 | 2954 | logfile |
✔ | 6o9Z | 0664 | 2023-11-19 | 2019-03-15 | 3.03 | 3.58 | — | 3.6 | 0.008 | 0.93 | 0.0 | 0.05 | 12.41 | 0.01 | 2.192 | 12.43 | 0.48 | 4.2 | 95.8 | 0.0 | -3.03 | 0.65 | 0.81 | 2.65 | 3.5 | 0.007 | 0.80 | 0.0 | 0.05 | 15.33 | 0.00 | 2.118 | 13.48 | 1.55 | 6.1 | 93.9 | 0.0 | -0.19 | 1.92 | 0.63 | 0.82 | 2.47 | 25788 | 3605 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UK5 | 26575 | 2023-11-14 | 2022-03-31 | 2.76 | 3.16 | 2.85 | 3.1 | 0.004 | 0.58 | 0.0 | 0.04 | 12.96 | 0.01 | 2.139 | 7.69 | 0.00 | 3.1 | 96.9 | 0.0 | 1.44 | 0.62 | 0.85 | 3.74 | 3.1 | 0.002 | 0.51 | 0.0 | 0.04 | 14.52 | 0.00 | 2.343 | 8.62 | 0.95 | 2.3 | 97.7 | 0.0 | 2.74 | 0.32 | 0.53 | 0.82 | 3.12 | 8000 | 1036 | 5 | 0 | 4 | 0 | 0 | logfile |
✔ | 8F3E | 28848 | 2023-11-18 | 2022-11-10 | 3.09 | 3.38 | 3.21 | 3.4 | 0.003 | 0.52 | 0.0 | 0.04 | 9.85 | 0.00 | 2.213 | 7.20 | 2.91 | 1.9 | 98.1 | 0.0 | 1.77 | 0.61 | 0.64 | 1.05 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 15.62 | 0.00 | 2.070 | 10.09 | 0.40 | 1.8 | 98.2 | 0.0 | 1.68 | 1.75 | 0.63 | 0.80 | 1.92 | 23627 | 3095 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8F56 | 28861 | 2023-11-16 | 2022-11-11 | 2.98 | 3.18 | 3.09 | 3.2 | 0.004 | 0.56 | 0.0 | 0.04 | 9.89 | 0.00 | 2.200 | 9.91 | 2.64 | 2.2 | 97.8 | 0.0 | 1.81 | 0.68 | 0.75 | 1.96 | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 16.16 | 0.00 | 2.177 | 10.36 | 3.00 | 1.8 | 98.2 | 0.0 | 1.79 | 1.29 | 0.70 | 0.86 | 2.19 | 15631 | 2039 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KPi | 0747 | 2023-11-15 | 2019-08-15 | 2.43 | 3.50 | — | 3.0 | 0.008 | 0.67 | 0.0 | 0.06 | 11.99 | 0.00 | 1.974 | 5.19 | 0.00 | 7.1 | 92.9 | 0.0 | -4.39 | 0.85 | 0.88 | 4.58 | 3.0 | 0.005 | 0.78 | 3.0 | 0.13 | 14.43 | 0.00 | 1.988 | 5.83 | 0.62 | 3.5 | 96.5 | 0.0 | 1.23 | 0.72 | 0.85 | 0.89 | 4.30 | 62209 | 3936 | 24 | 0 | 24 | 0 | 31225 | logfile |
✔ | 7UKC | 26576 | 2023-11-14 | 2022-04-01 | 3.0 | 3.39 | 2.98 | 3.3 | 0.006 | 0.67 | 0.0 | 0.04 | 12.54 | 0.00 | 2.127 | 8.37 | 0.24 | 3.1 | 96.9 | 0.0 | 0.47 | 0.66 | 0.87 | 3.11 | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 15.43 | 0.00 | 2.216 | 8.80 | 1.54 | 2.7 | 97.3 | 0.0 | 1.94 | 0.38 | 0.66 | 0.86 | 2.76 | 8000 | 1036 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 8SBD | 40305 | 2023-11-14 | 2023-04-03 | 3.2 | 3.26 | 4.77 | 3.7 | 0.003 | 0.73 | 0.0 | 0.04 | 12.98 | 0.00 | 2.203 | 18.83 | 5.97 | 6.2 | 93.8 | 0.0 | -4.19 | 0.70 | 0.71 | 2.96 | 3.7 | 0.004 | 0.68 | 0.0 | 0.05 | 15.43 | 0.00 | 1.888 | 27.68 | 0.56 | 11.5 | 88.5 | 0.0 | -4.15 | 1.07 | 0.72 | 0.74 | 3.13 | 8864 | 584 | 32 | 0 | 0 | 0 | 4280 | logfile |
✔ | 8AGC | 15420 | 2023-11-17 | 2022-07-19 | 3.1 | 3.40 | 3.13 | 3.3 | 0.009 | 1.06 | 0.0 | 0.06 | 16.26 | 0.01 | 2.139 | 7.10 | 3.53 | 4.8 | 95.1 | 0.1 | -1.13 | 0.77 | 0.89 | 3.83 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 15.87 | 0.00 | 2.130 | 5.49 | 0.05 | 2.8 | 97.2 | 0.0 | 0.62 | 1.02 | 0.77 | 0.91 | 3.54 | 17764 | 2152 | 20 | 0 | 33 | 0 | 0 | logfile |
✔ | 6PZ8 | 20527 | 2023-11-20 | 2019-07-31 | 4.19 | 4.96 | 4.49 | 4.4 | 0.018 | 1.82 | 0.0 | 0.10 | 11.12 | 0.01 | 2.247 | 1.37 | 0.30 | 3.2 | 96.2 | 0.6 | 0.33 | 0.75 | 0.57 | — | 4.2 | 0.005 | 0.86 | 0.0 | 0.05 | 13.15 | 0.01 | 2.110 | 30.72 | 0.00 | 8.1 | 91.6 | 0.3 | -1.52 | 1.13 | 0.77 | 0.66 | — | 28683 | 3585 | 42 | 0 | 78 | 0 | 0 | logfile |
✔ | 7SL1 | 25188 | 2023-11-19 | 2021-10-22 | 3.4 | 3.69 | — | 3.6 | 0.002 | 0.60 | 0.0 | 0.04 | 13.62 | 0.00 | 2.186 | 10.54 | 0.00 | 7.8 | 92.0 | 0.2 | -1.04 | 0.80 | 0.79 | 3.27 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 15.46 | 0.00 | 2.117 | 12.23 | 0.06 | 8.2 | 91.8 | 0.0 | -1.07 | 0.43 | 0.82 | 0.85 | 2.91 | 13830 | 1714 | 6 | 0 | 0 | 0 | 0 | logfile |