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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7BC6 | 12140 | 2023-09-27 | 2020-12-18 | 3.2 | 3.48 | 3.20 | 3.4 | 0.008 | 0.90 | 0.0 | 0.05 | 13.65 | 0.01 | 2.145 | 9.76 | 0.92 | 7.0 | 93.0 | 0.0 | -1.77 | 0.64 | 0.85 | 2.92 | 3.4 | 0.004 | 0.65 | 0.0 | 0.04 | 15.20 | 0.00 | 2.200 | 8.93 | 0.46 | 4.2 | 95.8 | 0.0 | 0.13 | 0.29 | 0.59 | 0.84 | 1.99 | 4178 | 549 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LKH | 23408 | 2023-09-27 | 2021-02-02 | 3.5 | 3.06 | — | 3.6 | 0.006 | 0.94 | 0.0 | 0.05 | 13.23 | 0.01 | 1.903 | 8.34 | 0.22 | 5.5 | 94.5 | 0.0 | -0.99 | 0.64 | 0.78 | 3.39 | 3.5 | 0.004 | 0.73 | 0.0 | 0.05 | 15.48 | 0.00 | 2.177 | 6.77 | 0.65 | 5.9 | 94.1 | 0.0 | -0.34 | 0.47 | 0.66 | 0.80 | 3.21 | 4179 | 516 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8GVE | 34291 | 2023-09-28 | 2022-09-15 | 3.17 | 3.38 | 3.19 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 14.33 | 0.01 | 2.113 | 5.93 | 0.00 | 5.7 | 94.3 | 0.0 | 0.31 | 0.64 | 0.80 | 1.68 | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 15.91 | 0.00 | 2.236 | 6.11 | 0.11 | 5.7 | 94.3 | 0.0 | 0.93 | 0.27 | 0.63 | 0.81 | 1.12 | 8054 | 1020 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8GVC | 34290 | 2023-09-28 | 2022-09-14 | 2.89 | 3.10 | 2.90 | 3.2 | 0.002 | 0.48 | 0.0 | 0.04 | 14.66 | 0.00 | 1.670 | 13.40 | 1.14 | 2.0 | 97.8 | 0.2 | 2.06 | 0.64 | 0.82 | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8080 | 1022 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7L7Q | 23216 | 2023-09-28 | 2020-12-30 | 3.7 | 4.37 | — | 4.0 | 0.005 | 0.91 | 0.0 | 0.05 | 15.54 | 0.00 | 1.873 | 23.85 | 0.16 | 10.2 | 89.5 | 0.3 | -4.40 | 0.84 | 0.81 | 0.86 | 4.0 | 0.004 | 0.97 | 0.0 | 0.05 | 17.50 | 0.00 | 2.055 | 22.26 | 0.16 | 8.2 | 91.8 | 0.0 | -0.37 | 1.44 | 0.84 | 0.79 | 0.98 | 5619 | 687 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GC6 | 4381 | 2023-09-30 | 2018-04-17 | 4.3 | 5.02 | — | 4.5 | 0.003 | 0.66 | 0.0 | 0.03 | 12.88 | 0.00 | 2.229 | 5.26 | 0.00 | 6.0 | 93.9 | 0.1 | -3.94 | 0.74 | 0.57 | — | 4.5 | 0.007 | 0.68 | 0.0 | 0.04 | 15.59 | 0.00 | 1.991 | 27.18 | 0.00 | 9.2 | 90.8 | 0.0 | -2.08 | 2.14 | 0.91 | 0.85 | — | 61404 | 2118 | 19 | 2092 | 0 | 0 | 0 | logfile |
✔ | 6XYo | 10650 | 2023-09-28 | 2020-01-30 | 2.6 | 2.79 | 2.31 | 2.7 | 0.008 | 0.74 | 0.0 | 0.06 | 12.93 | 0.00 | 2.300 | 5.78 | 0.93 | 2.6 | 97.4 | 0.0 | -2.90 | 0.46 | 0.89 | 5.98 | 2.7 | 0.007 | 0.62 | 0.0 | 0.05 | 17.92 | 0.00 | 2.105 | 4.45 | 2.22 | 4.4 | 95.6 | 0.0 | -1.84 | 0.96 | 0.48 | 0.91 | 4.74 | 5490 | 800 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HDS | 34679 | 2023-09-27 | 2022-11-06 | 3.57 | 3.28 | 3.59 | 3.4 | 0.007 | 1.11 | 0.0 | 0.06 | 10.70 | 0.01 | 2.312 | 4.13 | 0.63 | 10.9 | 89.1 | 0.0 | -6.20 | 0.55 | 0.77 | 2.49 | 3.4 | 0.004 | 0.71 | 0.0 | 0.04 | 16.09 | 0.00 | 2.083 | 10.70 | 0.96 | 9.7 | 90.3 | 0.0 | -2.59 | 1.26 | 0.56 | 0.78 | 1.67 | 53532 | 6864 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V0S | 26949 | 2023-09-30 | 2022-05-10 | 2.5 | 2.21 | 2.53 | 2.3 | 0.004 | 0.73 | 0.0 | 0.05 | 16.59 | 0.00 | 2.208 | 5.09 | 2.55 | 1.7 | 98.2 | 0.1 | 1.73 | 0.70 | 0.88 | 4.46 | 2.3 | 0.004 | 0.59 | 0.0 | 0.04 | 16.67 | 0.00 | 2.190 | 6.46 | 2.36 | 1.9 | 98.1 | 0.0 | 1.84 | 0.48 | 0.70 | 0.89 | 4.58 | 10303 | 1315 | 10 | 0 | 3 | 178 | 0 | logfile |
✘ | 7SXY | 25510 | 2023-09-28 | 2021-11-24 | 2.79 | 3.53 | — | 3.2 | 0.005 | 0.84 | 0.0 | 0.06 | 13.35 | 0.01 | 2.303 | 2.81 | 0.00 | 1.3 | 98.7 | 0.0 | -0.48 | 0.82 | 0.87 | 3.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6557 | 797 | 4 | 0 | 7 | 0 | 0 | logfile |
✔ | 7V0X | 26952 | 2023-09-27 | 2022-05-11 | 3.0 | 2.83 | 2.92 | 2.9 | 0.002 | 0.63 | 0.0 | 0.04 | 19.06 | 0.01 | 2.211 | 6.52 | 5.05 | 4.0 | 96.0 | 0.0 | 0.72 | 0.61 | 0.88 | 3.78 | 2.9 | 0.002 | 0.53 | 0.0 | 0.04 | 19.08 | 0.00 | 2.176 | 7.23 | 4.38 | 4.9 | 95.1 | 0.0 | 1.77 | 0.47 | 0.60 | 0.88 | 3.17 | 2818 | 375 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XD3 | 33134 | 2023-09-29 | 2022-03-26 | 4.05 | 4.16 | — | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 16.04 | 0.00 | 1.960 | 1.21 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.85 | 0.74 | — | 3.9 | 0.007 | 0.80 | 0.0 | 0.04 | 17.33 | 0.01 | 1.680 | 17.06 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.79 | 0.87 | 0.82 | — | 9062 | 0 | 1 | 423 | 28 | 0 | 0 | logfile |
✘ | 7QFQ | 13947 | 2023-09-30 | 2021-12-06 | 3.6 | 3.83 | 3.58 | 4.0 | 0.002 | 0.54 | 0.0 | 0.04 | 12.93 | 0.00 | 2.177 | 8.31 | 0.00 | 5.4 | 94.6 | 0.0 | -0.70 | 0.65 | 0.70 | 1.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10659 | 1291 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NZM | 12665 | 2023-09-29 | 2021-03-24 | 3.96 | 6.56 | 4.22 | 4.2 | 0.007 | 1.12 | 0.0 | 0.06 | 13.94 | 0.01 | 1.774 | 11.10 | 0.00 | 3.8 | 96.2 | 0.0 | -1.56 | 0.77 | 0.51 | -0.04 | 4.3 | 0.003 | 0.74 | 0.0 | 0.04 | 15.04 | 0.00 | 2.061 | 18.47 | 0.21 | 2.9 | 97.1 | 0.0 | 0.28 | 1.50 | 0.94 | 0.84 | 0.28 | 9109 | 1157 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 8S9P | 40241 | 2023-09-29 | 2023-03-29 | 3.8 | 4.16 | 3.92 | 4.0 | 0.005 | 0.82 | 0.0 | 0.05 | 17.16 | 0.01 | 2.024 | 21.44 | 1.88 | 9.3 | 90.5 | 0.2 | -2.07 | 0.80 | 0.78 | 1.62 | 4.0 | 0.006 | 0.85 | 0.0 | 0.05 | 17.20 | 0.01 | 2.084 | 24.93 | 1.28 | 10.1 | 89.8 | 0.1 | -2.31 | 0.99 | 0.80 | 0.79 | 1.61 | 9288 | 1189 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Mo8 | 23920 | 2023-09-29 | 2021-05-01 | 4.5 | 3.94 | — | 3.6 | 0.008 | 1.02 | 0.0 | 0.05 | 16.58 | 0.01 | 2.070 | 31.26 | 0.00 | 9.8 | 90.2 | 0.0 | -1.95 | 0.82 | 0.75 | — | 3.6 | 0.004 | 0.74 | 0.0 | 0.05 | 14.46 | 0.00 | 2.115 | 25.62 | 0.00 | 8.6 | 91.4 | 0.0 | -1.94 | 2.28 | 0.83 | 0.76 | — | 9877 | 1250 | 3 | 0 | 6 | 0 | 0 | logfile |
✔ | 7F3X | 31442 | 2023-09-28 | 2021-06-17 | 3.57 | 4.09 | — | 4.0 | 0.003 | 0.67 | 0.0 | 0.04 | 15.03 | 0.00 | 2.117 | 6.43 | 0.00 | 7.2 | 92.6 | 0.2 | -0.61 | 0.63 | 0.83 | 2.27 | 4.0 | 0.003 | 0.66 | 0.0 | 0.04 | 16.64 | 0.00 | 2.114 | 8.18 | 0.51 | 7.5 | 92.3 | 0.2 | 0.20 | 0.97 | 0.58 | 0.81 | 1.58 | 7408 | 898 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7A2i | 11625 | 2023-09-29 | 2020-08-18 | 3.3 | 3.94 | 3.40 | 3.8 | 0.004 | 0.62 | 0.0 | 0.04 | 12.87 | 0.00 | 2.232 | 6.57 | 0.00 | 7.0 | 93.0 | 0.0 | -1.94 | 0.81 | 0.84 | 2.69 | 3.8 | 0.002 | 0.53 | 0.0 | 0.04 | 13.99 | 0.00 | 2.238 | 6.00 | 0.00 | 4.3 | 95.7 | 0.0 | -0.30 | 1.20 | 0.82 | 0.85 | 2.44 | 9196 | 1217 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 7PQX | 13606 | 2023-09-29 | 2021-09-20 | 3.08 | 3.48 | — | 3.4 | 0.010 | 1.11 | 0.0 | 0.06 | 14.20 | 0.01 | 2.296 | 4.37 | 0.00 | 4.3 | 95.7 | 0.0 | -2.13 | 0.69 | 0.85 | 2.92 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 15.53 | 0.00 | 2.140 | 9.13 | 0.73 | 3.5 | 96.5 | 0.0 | 1.41 | 0.94 | 0.69 | 0.87 | 2.34 | 9032 | 1160 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TQE | 10549 | 2023-09-30 | 2019-12-16 | 4.3 | 4.14 | — | 4.2 | 0.007 | 1.04 | 0.0 | 0.06 | 14.59 | 0.01 | 2.077 | 2.78 | 0.76 | 8.6 | 91.4 | 0.0 | -6.13 | 0.76 | 0.89 | — | 4.2 | 0.002 | 0.61 | 0.0 | 0.04 | 13.69 | 0.00 | 2.010 | 4.66 | 0.00 | 5.1 | 94.9 | 0.0 | -2.69 | 1.28 | 0.75 | 0.88 | — | 10076 | 1268 | 4 | 0 | 4 | 0 | 0 | logfile |