Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5GAQ	8015	2022-04-06	2016-01-05	3.1	3.36	—	3.2	0.006	1.01	0.0	0.08	11.97	0.00	2.289	1.94	0.80	7.3	92.7	0.0	-3.69	0.56	0.50	3.88	3.2	0.003	0.62	0.0	0.05	16.42	0.00	2.160	12.73	0.27	2.5	97.5	0.0	-1.81	1.65	0.78	0.84	3.66	20574	2592	9	0	0	0	0	logfile
✔	6U5o	20651	2022-04-07	2019-08-28	3.7	3.81	—	3.8	0.005	0.78	0.0	0.04	14.70	0.01	2.093	5.81	0.00	0.0	100.0	0.0	-4.22	0.65	0.75	1.93	3.8	0.004	0.67	0.0	0.04	16.92	0.01	1.902	10.26	0.27	8.4	91.6	0.0	-1.39	1.53	0.68	0.80	2.18	26316	1623	5	0	0	0	13339	logfile
✔	6BZE	7314	2022-04-05	2017-12-23	4.0	4.03	—	4.0	0.009	1.42	0.0	0.08	17.34	0.01	1.648	79.81	9.00	13.2	86.4	0.4	-5.34	0.37	0.48	—	4.0	0.004	1.05	0.0	0.05	18.92	0.00	2.121	28.61	0.88	11.1	88.7	0.2	-2.43	2.80	0.51	0.72	—	7072	848	8	0	0	0	0	logfile
✔	5G2Y	3332	2022-04-05	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.01	0.0	0.05	23.66	0.01	1.957	72.02	0.00	0.0	0.0	0.0	—	3.26	0.89	0.78	—	13494	0	1	630	0	0	0	logfile
✔	6oLK	20115	2022-04-06	2019-04-16	4.0	4.14	—	4.1	0.005	1.04	0.0	0.06	5.09	0.01	2.445	0.20	0.00	2.3	97.7	0.0	-0.75	0.56	0.49	—	4.1	0.003	0.69	0.0	0.04	4.93	0.00	2.195	4.38	0.00	8.3	91.7	0.0	-1.09	1.39	0.63	0.59	—	10323	2094	6	0	0	0	0	logfile
✔	6iZV	9758	2022-04-04	2018-12-20	4.2	4.27	—	4.2	0.005	0.90	0.0	0.05	10.55	0.01	2.170	5.77	0.00	4.9	95.1	0.0	-3.60	0.68	0.81	—	4.1	0.003	0.70	0.0	0.04	12.41	0.00	1.991	11.90	0.00	5.2	94.8	0.0	-0.81	1.02	0.70	0.82	—	5624	698	4	0	4	0	0	logfile
✔	5LNK	4093	2022-04-05	2016-08-04	3.9	3.95	—	3.9	0.007	1.05	0.0	1.04	10.81	0.01	2.038	25.39	0.32	12.6	86.9	0.5	-4.85	0.76	0.79	1.96	3.9	0.013	1.93	4.0	0.32	16.79	0.01	1.686	26.78	0.72	11.1	88.5	0.4	-1.76	0.90	0.77	0.79	0.83	63760	7918	61	0	144	0	0	logfile
✔	6SYT	10347	2022-04-06	2019-10-01	3.45	3.54	—	3.5	0.018	1.23	0.0	0.16	9.36	0.01	1.903	3.04	0.13	7.5	92.4	0.1	-5.37	0.69	0.81	4.11	3.5	0.002	0.60	0.0	0.04	13.79	0.00	2.060	5.04	0.25	3.1	96.9	0.0	1.00	0.64	0.71	0.84	2.38	18369	2369	5	0	216	0	0	logfile
✔	6NT9	0506	2022-04-05	2019-01-28	3.3	3.42	—	3.3	0.010	0.89	0.0	0.06	9.66	0.01	2.250	1.52	0.18	3.5	96.5	0.0	-2.03	0.81	0.86	3.98	3.3	0.004	0.53	0.0	0.04	14.49	0.00	2.218	4.29	0.36	1.8	98.2	0.0	2.41	0.59	0.83	0.88	3.11	9906	1228	4	0	0	0	0	logfile
✔	6N7W	0365	2022-04-04	2018-11-28	4.5	4.41	—	4.1	0.006	0.79	0.0	0.05	19.17	0.02	2.125	3.09	0.46	4.4	95.5	0.1	-2.55	0.85	0.81	—	4.1	0.003	0.60	0.0	0.04	19.51	0.00	1.993	11.76	0.00	4.9	95.1	0.0	1.25	1.92	0.87	0.84	—	7837	808	5	70	2	0	0	logfile
✔	6XTB	10618	2022-04-04	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.004	1.06	0.0	0.05	7.90	0.00	2.205	9.62	0.00	22.1	77.9	0.0	-5.53	2.43	0.34	0.64	—	1161	235	1	0	0	0	0	logfile
✔	6D7T	7825	2022-04-06	2018-04-25	4.44	4.50	—	4.4	0.010	1.49	0.0	0.07	14.79	0.01	1.997	11.64	5.48	10.7	88.8	0.5	-5.38	0.73	0.82	—	4.4	0.003	0.91	0.0	0.04	13.38	0.00	2.163	17.71	0.05	8.8	91.1	0.1	-1.96	0.82	0.73	0.80	—	19654	2444	8	0	6	0	0	logfile
✔	6J5A	0670	2022-04-04	2019-01-10	4.35	4.41	—	4.3	0.008	1.25	0.0	0.05	15.23	0.01	1.776	15.50	1.18	8.9	90.5	0.6	-6.05	0.52	0.56	—	4.3	0.003	0.81	0.0	0.04	13.04	0.00	2.218	11.14	0.00	8.5	91.5	0.0	-1.38	1.80	0.57	0.67	—	8544	1064	18	0	218	0	0	logfile
✔	6NCV	0438	2022-04-05	2018-12-12	3.7	3.98	—	3.9	0.008	0.94	0.0	0.05	17.27	0.01	2.398	4.87	2.74	9.1	90.9	0.0	-6.46	0.73	0.84	0.57	3.9	0.004	0.73	0.0	0.04	18.50	0.00	2.089	7.10	0.98	6.2	93.8	0.0	-0.22	1.69	0.74	0.85	1.18	15456	1911	21	0	0	0	0	logfile
✔	6FSZ	4301	2022-04-08	2018-02-20	4.6	4.95	—	4.6	0.010	1.25	0.0	0.06	10.87	0.01	2.147	13.06	0.26	7.3	92.7	0.0	-3.42	0.88	0.82	—	4.6	0.003	0.67	0.0	0.04	11.78	0.00	2.112	14.92	0.05	4.4	95.6	0.0	-0.57	1.63	0.88	0.81	—	36972	4821	15	23	11	0	0	logfile
✔	6RTC	4997	2022-04-06	2019-05-23	3.96	4.05	3.97	4.0	0.007	0.91	0.0	0.05	14.96	0.01	2.295	1.19	0.00	3.9	96.1	0.0	-3.83	0.68	0.80	1.58	4.0	0.002	0.58	0.0	0.04	16.14	0.00	2.258	6.56	0.10	4.6	95.4	0.0	0.77	0.62	0.68	0.81	1.63	19374	1242	2	0	0	0	9804	logfile
✔	5W5F	8767	2022-04-06	2017-06-15	3.4	3.16	—	3.6	0.007	0.91	0.0	0.06	12.30	0.01	2.171	6.53	0.00	4.1	95.9	0.0	-2.49	0.66	0.71	0.69	3.5	0.004	0.80	0.0	0.05	17.00	0.00	2.108	17.95	1.01	4.9	95.1	0.0	-1.93	2.79	0.73	0.84	2.39	23472	2934	18	0	0	0	0	logfile
✔	6DJP	7939	2022-04-04	2018-05-25	4.8	5.02	—	4.8	0.011	2.00	0.0	0.08	5.34	0.01	2.368	0.45	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.009	1.27	0.0	0.05	9.47	0.01	2.140	24.14	0.00	24.7	74.7	0.6	-4.67	1.25	0.82	0.77	—	7307	1393	8	0	23	0	0	logfile
✔	6VVo	21405	2022-04-07	2020-02-18	3.4	3.45	—	3.3	0.008	0.82	0.0	0.05	14.00	0.00	1.915	9.84	0.41	4.7	95.2	0.1	-2.93	0.89	0.86	2.75	3.3	0.002	0.54	0.0	0.04	15.19	0.00	1.979	7.03	0.27	3.1	96.9	0.0	0.71	1.15	0.90	0.88	2.49	19668	2493	13	0	9	0	0	logfile
✔	6CV9	7637	2022-04-05	2018-03-27	3.8	4.02	3.77	3.9	0.006	1.00	0.0	0.05	9.51	0.01	2.316	6.18	0.00	8.7	91.3	0.0	-3.93	0.77	0.75	1.07	3.9	0.018	1.42	2.0	0.04	15.92	0.01	2.018	19.70	0.27	9.1	90.9	0.0	0.08	2.75	0.80	0.80	1.22	10032	1264	4	0	0	0	0	logfile

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