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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PPR | 20446 | 2022-12-12 | 2019-07-08 | 3.5 | 3.62 | — | 3.6 | 0.009 | 1.16 | 0.0 | 0.06 | 14.83 | 0.01 | 2.032 | 11.55 | 1.28 | 10.1 | 89.8 | 0.1 | -6.00 | 0.77 | 0.84 | 3.29 | 3.6 | 0.003 | 0.69 | 0.0 | 0.04 | 16.93 | 0.00 | 2.051 | 6.06 | 0.59 | 5.9 | 94.1 | 0.0 | -1.69 | 1.08 | 0.77 | 0.84 | 2.60 | 11995 | 1594 | 4 | 32 | 2 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2022-12-19 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.57 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PWW | 20513 | 2022-12-18 | 2019-07-23 | 4.4 | 5.49 | — | 4.5 | 0.004 | 0.64 | 0.0 | 0.04 | 25.69 | 0.00 | 1.996 | 22.00 | 1.22 | 4.5 | 95.5 | 0.0 | -2.62 | 0.92 | 0.84 | — | 4.5 | 0.005 | 0.72 | 0.0 | 0.04 | 25.25 | 0.00 | 2.055 | 28.30 | 0.00 | 5.3 | 94.7 | 0.0 | -1.27 | 0.69 | 0.92 | 0.85 | — | 18174 | 1550 | 14 | 292 | 1 | 0 | 0 | logfile |
✔ | 6RUo | 10007 | 2022-12-22 | 2019-05-28 | 3.5 | 3.56 | — | 4.0 | 0.007 | 1.05 | 0.0 | 0.06 | 13.11 | 0.01 | 2.170 | 8.06 | 0.40 | 10.5 | 89.4 | 0.1 | -4.99 | 0.53 | 0.29 | 0.05 | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 17.45 | 0.00 | 2.062 | 19.29 | 0.53 | 8.4 | 91.6 | 0.0 | -2.64 | 2.43 | 0.68 | 0.60 | 0.65 | 50792 | 6086 | 26 | 93 | 8 | 0 | 0 | logfile |
✔ | 6SSX | 10307 | 2022-12-11 | 2019-09-09 | 2.98 | 3.11 | — | 3.1 | 0.008 | 0.94 | 0.0 | 0.07 | 14.94 | 0.00 | 2.424 | 6.14 | 4.26 | 12.6 | 87.4 | 0.0 | -4.73 | 0.65 | 0.82 | 4.81 | 3.0 | 0.007 | 0.76 | 0.0 | 0.05 | 17.03 | 0.00 | 2.213 | 12.88 | 4.04 | 12.6 | 87.4 | 0.0 | -5.11 | 0.78 | 0.65 | 0.85 | 4.46 | 4900 | 730 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oMB | 20124 | 2022-12-18 | 2019-04-18 | 3.7 | 3.91 | — | 3.8 | 0.010 | 0.96 | 0.0 | 0.05 | 15.28 | 0.03 | 1.515 | 4.75 | 0.18 | 7.3 | 92.7 | 0.0 | -4.26 | 0.75 | 0.81 | 0.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21815 | 2775 | 11 | 0 | 48 | 0 | 0 | logfile |
✔ | 6F2D | 4173 | 2022-12-12 | 2017-11-24 | 4.2 | 4.27 | 4.05 | 4.1 | 0.010 | 1.19 | 0.0 | 0.05 | 9.30 | 0.01 | 2.023 | 26.32 | 0.51 | 16.3 | 83.0 | 0.7 | -6.32 | 0.71 | 0.72 | — | 4.1 | 0.004 | 0.88 | 0.0 | 0.04 | 12.99 | 0.01 | 2.116 | 13.80 | 0.00 | 7.9 | 91.5 | 0.6 | 0.23 | 2.03 | 0.75 | 0.77 | — | 12541 | 1629 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PPL | 20442 | 2022-12-11 | 2019-07-08 | 3.02 | 3.14 | — | 3.1 | 0.010 | 0.99 | 0.0 | 0.25 | 14.17 | 0.01 | 1.917 | 3.57 | 0.23 | 2.7 | 97.3 | 0.0 | -6.00 | 0.74 | 0.86 | 4.10 | 3.1 | 0.004 | 0.65 | 0.0 | 0.05 | 16.12 | 0.00 | 2.116 | 6.52 | 0.23 | 2.8 | 97.2 | 0.0 | -0.72 | 1.92 | 0.74 | 0.88 | 3.40 | 8155 | 980 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 6N3C | 0334 | 2022-12-11 | 2018-11-14 | 3.3 | 3.53 | — | 3.5 | 0.009 | 1.31 | 0.0 | 0.07 | 14.00 | 0.00 | 2.387 | 18.47 | 0.00 | 11.5 | 88.5 | 0.0 | -5.01 | 0.52 | 0.83 | 4.06 | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 15.70 | 0.00 | 2.372 | 12.69 | 1.58 | 8.2 | 91.8 | 0.0 | -3.77 | 2.40 | 0.52 | 0.83 | 3.93 | 4260 | 640 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 6B3o | 7040 | 2022-12-11 | 2017-09-22 | 4.1 | 4.04 | — | 4.1 | 0.024 | 1.82 | 0.0 | 0.11 | 10.99 | 0.01 | 2.285 | 2.28 | 0.34 | 2.1 | 97.6 | 0.3 | 1.14 | 0.69 | 0.76 | — | 4.0 | 0.004 | 0.71 | 0.0 | 0.04 | 14.21 | 0.00 | 2.135 | 10.06 | 0.00 | 3.9 | 95.8 | 0.3 | 1.00 | 1.66 | 0.71 | 0.76 | — | 7980 | 1032 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N37 | 9339 | 2022-12-11 | 2018-11-14 | 3.8 | 3.51 | — | 4.2 | 0.009 | 1.42 | 0.0 | 0.06 | 16.98 | 0.01 | 2.399 | 13.15 | 0.00 | 14.7 | 85.3 | 0.0 | -5.92 | 0.51 | 0.77 | 3.18 | 3.6 | 0.004 | 0.78 | 0.0 | 0.04 | 18.43 | 0.00 | 2.266 | 20.72 | 0.80 | 11.2 | 88.8 | 0.0 | -5.14 | 0.89 | 0.52 | 0.77 | 2.42 | 2580 | 360 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N3B | 9350 | 2022-12-11 | 2018-11-14 | 3.8 | 3.75 | — | 4.0 | 0.010 | 1.21 | 0.0 | 0.05 | 11.40 | 0.01 | 2.253 | 20.70 | 0.00 | 13.7 | 86.3 | 0.0 | -5.17 | 0.41 | 0.71 | 2.90 | 4.0 | 0.005 | 0.87 | 0.0 | 0.04 | 16.51 | 0.01 | 2.102 | 26.34 | 1.51 | 13.2 | 86.8 | 0.0 | -5.29 | 1.48 | 0.42 | 0.71 | 1.88 | 2735 | 385 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 5AJ3 | 2913 | 2022-12-13 | 2015-02-20 | 3.6 | 3.73 | — | 3.7 | 0.018 | 1.27 | 0.0 | 0.05 | 18.73 | 0.01 | 1.844 | 24.09 | 10.71 | 3.9 | 96.0 | 0.1 | -3.65 | 0.86 | 0.86 | 2.03 | 3.6 | 0.004 | 0.70 | 0.0 | 0.04 | 18.12 | 0.00 | 1.816 | 14.88 | 0.83 | 4.5 | 95.4 | 0.0 | 0.15 | 1.61 | 0.84 | 0.82 | 1.66 | 66363 | 4665 | 44 | 1102 | 1006 | 118 | 0 | logfile |
✔ | 6D7S | 7824 | 2022-12-14 | 2018-04-25 | 4.34 | 4.44 | — | 4.3 | 0.007 | 1.16 | 0.0 | 0.06 | 11.86 | 0.01 | 2.248 | 7.37 | 1.17 | 12.1 | 87.8 | 0.2 | -5.61 | 0.77 | 0.79 | — | 4.3 | 0.003 | 0.84 | 0.0 | 0.04 | 13.61 | 0.00 | 2.202 | 15.84 | 0.10 | 10.1 | 89.9 | 0.0 | -1.23 | 1.42 | 0.77 | 0.80 | — | 19018 | 2372 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PEo | 20328 | 2022-12-11 | 2019-06-20 | 3.3 | 3.52 | — | 3.6 | 0.003 | 0.54 | 0.0 | 0.05 | 13.06 | 0.01 | 2.492 | 10.62 | 0.00 | 9.7 | 90.3 | 0.0 | -1.64 | 0.41 | 0.82 | 3.20 | 3.6 | 0.006 | 0.64 | 0.0 | 0.06 | 15.74 | 0.00 | 2.435 | 9.07 | 0.00 | 8.1 | 91.9 | 0.0 | -2.61 | 1.64 | 0.42 | 0.83 | 4.88 | 2205 | 320 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DZM | 8936 | 2022-12-13 | 2018-07-05 | 4.29 | 4.66 | — | 4.3 | 0.008 | 0.91 | 0.0 | 0.05 | 9.66 | 0.01 | 2.058 | 8.59 | 0.00 | 13.6 | 86.4 | 0.0 | -4.76 | 0.77 | 0.80 | — | 4.3 | 0.003 | 0.70 | 0.0 | 0.04 | 11.90 | 0.00 | 2.190 | 14.07 | 0.00 | 9.3 | 90.7 | 0.0 | -1.69 | 0.94 | 0.78 | 0.83 | — | 13584 | 1695 | 24 | 0 | 27 | 0 | 0 | logfile |
✔ | 6PES | 20331 | 2022-12-11 | 2019-06-20 | 3.6 | 3.82 | — | 4.0 | 0.009 | 0.70 | 0.0 | 0.06 | 12.87 | 0.01 | 2.432 | 11.45 | 0.00 | 12.3 | 87.7 | 0.0 | -1.79 | 0.38 | 0.78 | 1.73 | 4.0 | 0.003 | 0.59 | 0.0 | 0.05 | 14.73 | 0.00 | 2.341 | 7.11 | 0.00 | 6.5 | 93.5 | 0.0 | -2.43 | 0.56 | 0.43 | 0.81 | 2.65 | 4040 | 590 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PDT | 20309 | 2022-12-16 | 2019-06-19 | 3.8 | 3.95 | — | 3.9 | 0.022 | 2.06 | 0.0 | 0.21 | 11.05 | 0.01 | 1.771 | 1.30 | 0.00 | 1.9 | 97.7 | 0.4 | 0.40 | 0.73 | 0.73 | 1.74 | 3.9 | 0.005 | 0.94 | 0.0 | 0.04 | 14.91 | 0.00 | 1.722 | 11.32 | 0.23 | 6.9 | 93.1 | 0.0 | 0.42 | 2.53 | 0.76 | 0.79 | 1.58 | 31364 | 2000 | 8 | 0 | 12 | 0 | 15636 | logfile |
✔ | 6UFR | 20759 | 2022-12-11 | 2019-09-24 | 2.5 | 2.80 | — | 2.8 | 0.012 | 0.96 | 0.0 | 0.07 | 13.71 | 0.01 | 2.209 | 5.48 | 0.00 | 6.6 | 93.4 | 0.0 | -1.99 | 0.50 | 0.87 | 5.55 | 2.8 | 0.004 | 0.63 | 0.0 | 0.06 | 17.00 | 0.00 | 2.402 | 2.46 | 2.95 | 4.8 | 95.2 | 0.0 | -0.87 | 0.98 | 0.51 | 0.89 | 5.06 | 4420 | 630 | 20 | 0 | 0 | 90 | 0 | logfile |
✔ | 6BFU | 7094 | 2022-12-15 | 2017-10-27 | 3.5 | 3.80 | — | 3.7 | 0.018 | 1.32 | 0.0 | 0.09 | 10.46 | 0.01 | 2.005 | 1.54 | 0.35 | 3.2 | 96.6 | 0.2 | 0.52 | 0.86 | 0.84 | 2.39 | 3.7 | 0.004 | 0.61 | 0.0 | 0.04 | 13.49 | 0.00 | 2.143 | 8.19 | 0.31 | 3.7 | 96.3 | 0.0 | 0.52 | 0.72 | 0.82 | 0.85 | 2.67 | 24480 | 2892 | 45 | 0 | 168 | 0 | 0 | logfile |