Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VN7	21249	2023-04-20	2020-01-29	3.2	3.53	—	3.7	0.004	0.90	0.0	0.07	8.54	0.01	2.254	4.22	0.00	2.8	97.2	0.0	-2.38	0.66	0.78	2.53	3.7	0.005	0.65	0.0	0.04	14.31	0.00	2.106	8.15	0.44	2.3	97.7	0.0	0.87	0.75	0.56	0.74	2.05	8620	1052	7	0	10	0	0	logfile
✔	6T2V	10370	2023-04-26	2019-10-09	3.8	4.58	—	3.8	0.002	0.45	0.0	0.03	13.03	0.01	2.213	4.84	3.02	2.0	98.0	0.0	-3.62	0.88	0.73	0.79	3.8	0.004	0.72	0.0	0.04	15.71	0.00	2.160	15.45	0.17	4.1	95.9	0.0	0.33	2.38	0.90	0.80	0.62	23826	2847	4	54	0	0	0	logfile
✔	8A7D	15220	2023-04-21	2022-06-20	3.06	3.45	3.18	3.4	0.004	0.76	0.0	0.05	14.94	0.01	2.115	7.59	0.50	5.3	94.2	0.5	-0.22	0.64	0.77	2.66	3.4	0.003	0.63	0.0	0.04	15.80	0.00	2.144	8.11	0.67	4.7	95.0	0.3	0.25	0.54	0.60	0.75	2.34	10771	1361	5	0	17	0	0	logfile
✔	6ZY7	11553	2023-04-25	2020-07-30	4.64	8.26	4.84	4.6	0.009	1.01	0.0	0.08	12.28	0.01	2.218	6.54	0.00	1.7	98.3	0.0	-1.71	0.93	0.83	—	4.6	0.002	0.57	0.0	0.04	13.75	0.00	2.166	14.32	0.00	2.3	97.7	0.0	-0.31	2.28	0.92	0.71	—	19979	2319	10	60	4	0	0	logfile
✔	7CKB	30384	2023-04-22	2020-07-16	3.24	3.29	—	3.2	0.008	0.88	0.0	0.05	16.33	0.01	2.160	6.96	1.05	4.0	96.0	0.0	-0.87	0.85	0.88	2.17	3.2	0.006	0.72	0.0	0.05	17.10	0.00	2.145	7.26	1.43	2.5	97.5	0.0	-0.14	0.28	0.85	0.90	2.74	114840	15840	180	0	0	0	0	logfile
✔	7TS0	26104	2023-04-21	2022-01-31	2.8	3.02	—	3.1	0.004	0.79	0.0	0.05	8.38	0.01	2.273	3.92	0.10	1.5	98.5	0.0	-1.24	0.66	0.80	2.15	3.0	0.005	0.63	0.0	0.04	15.45	0.00	2.073	6.94	2.05	2.2	97.8	0.0	1.52	1.63	0.62	0.84	2.85	9383	1186	6	0	0	0	0	logfile
✔	7CKW	30392	2023-04-23	2020-07-20	3.22	3.34	—	3.3	0.002	0.48	0.0	0.04	13.74	0.00	2.178	15.84	1.74	3.0	97.0	0.0	-3.30	0.58	0.71	1.74	3.3	0.003	0.67	0.0	0.04	16.11	0.00	2.036	20.45	0.70	4.6	95.4	0.0	-0.85	0.67	0.62	0.78	1.82	8103	1035	5	0	2	0	0	logfile
✔	7XN3	33309	2023-04-23	2022-04-27	2.9	3.05	2.92	3.0	0.006	0.62	0.0	0.05	13.52	0.00	2.174	6.06	2.37	7.9	92.1	0.0	-0.76	0.72	0.84	3.66	3.0	0.003	0.58	0.0	0.05	14.71	0.00	2.205	5.95	0.72	6.6	93.4	0.0	0.25	0.37	0.74	0.87	3.52	14016	1830	18	0	12	54	0	logfile
✔	8F7Q	28907	2023-04-22	2022-11-20	3.22	3.34	3.24	3.4	0.004	0.87	0.0	0.07	8.03	0.01	2.262	3.31	0.00	1.4	98.6	0.0	0.89	0.64	0.78	2.57	3.3	0.003	0.53	0.0	0.04	12.74	0.00	2.135	5.66	0.23	1.8	98.2	0.0	2.02	0.66	0.64	0.83	2.76	11994	1484	11	0	10	0	0	logfile
✔	7P5J	13200	2023-04-20	2021-07-14	4.0	3.72	3.98	4.0	0.004	0.72	0.0	0.04	15.50	0.01	2.264	8.81	0.60	2.5	97.5	0.0	2.65	0.51	0.76	—	4.0	0.003	0.79	0.0	0.04	17.82	0.00	2.172	11.51	0.45	1.8	98.2	0.0	3.11	0.48	0.53	0.77	—	6250	798	6	0	8	0	0	logfile
✔	7AZP	11950	2023-04-28	2020-11-17	3.5	3.84	3.46	3.6	0.004	0.62	0.0	0.04	13.41	0.00	2.210	10.65	0.71	3.3	96.7	0.0	-2.29	0.89	0.86	0.66	3.6	0.007	0.75	0.0	0.05	14.85	0.00	2.172	14.54	0.54	4.3	95.7	0.0	0.48	1.22	0.89	0.86	1.01	27391	3675	7	0	0	0	0	logfile
✔	6LW1	30002	2023-04-22	2020-02-06	2.8	2.98	—	3.1	0.010	1.05	0.0	0.07	17.53	0.00	2.119	11.43	7.10	10.3	89.2	0.5	-3.85	0.67	0.80	2.54	3.1	0.003	0.62	0.0	0.05	17.99	0.00	2.108	10.95	4.74	5.9	93.8	0.3	-2.06	0.48	0.62	0.78	2.80	12412	1526	4	0	2	0	0	logfile
✘	6H3i	0133	2023-04-25	2018-07-18	3.5	3.59	—	3.5	0.009	0.92	0.0	0.05	10.08	0.01	2.012	39.59	0.40	21.4	78.4	0.2	-5.64	0.78	0.86	4.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20599	2597	3	0	0	0	53	logfile
✔	7oHB	12899	2023-04-22	2021-05-10	3.4	3.61	—	3.4	0.005	0.86	0.0	0.05	28.70	0.01	2.254	4.48	0.89	2.6	97.4	0.0	-2.05	0.89	0.86	3.09	3.3	0.003	0.62	0.0	0.04	27.93	0.00	2.224	10.43	0.25	2.2	97.8	0.0	1.68	1.19	0.90	0.88	2.44	13424	943	11	290	0	0	0	logfile
✔	6PVM	20493	2023-04-25	2019-07-21	4.5	4.24	—	4.3	0.006	1.18	0.0	0.06	12.60	0.01	2.154	6.75	0.87	15.6	84.1	0.3	-6.13	0.49	0.74	—	4.3	0.003	0.88	0.0	0.04	13.70	0.00	2.121	13.51	0.00	13.6	86.1	0.3	-2.67	1.03	0.49	0.74	—	21006	2576	6	0	2	0	0	logfile
✘	8CVP	27012	2023-04-21	2022-05-18	3.4	3.75	3.50	3.7	0.003	0.58	0.0	0.04	13.05	0.00	2.231	4.87	0.12	6.1	93.8	0.1	-1.69	0.69	0.74	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10112	1484	2	0	1	0	0	logfile
✔	7WQ4	32699	2023-04-20	2022-01-24	2.6	2.77	—	2.9	0.007	0.61	0.0	0.05	8.04	0.00	1.399	6.69	0.45	0.8	99.2	0.0	-1.07	0.51	0.70	3.03	2.8	0.003	0.56	0.0	0.04	15.87	0.00	2.151	6.33	2.82	1.9	98.1	0.0	0.90	1.28	0.64	0.83	3.61	8290	1048	7	0	2	0	0	logfile
✘	6P19	20234	2023-04-28	2019-05-19	3.8	3.94	3.94	3.8	0.008	0.92	0.0	0.06	16.49	0.01	2.061	7.97	0.46	6.1	93.9	0.0	-3.93	0.84	0.82	1.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27416	3323	10	66	3	0	0	logfile
✔	7CZ5	30505	2023-04-20	2020-09-07	2.6	2.89	—	2.9	0.004	0.69	0.0	0.05	13.25	0.00	2.186	6.27	0.00	3.3	96.7	0.0	-2.04	0.60	0.80	4.16	2.9	0.002	0.53	0.0	0.04	16.06	0.00	2.174	6.39	1.46	2.9	97.1	0.0	0.42	0.47	0.61	0.82	2.89	8336	1046	11	0	3	3	0	logfile
✔	7SHS	25135	2023-04-20	2021-10-11	4.1	3.40	—	4.3	0.003	0.74	0.0	0.04	13.65	0.01	2.349	5.95	0.00	1.8	98.2	0.0	0.74	0.60	0.71	—	3.3	0.002	0.61	0.0	0.04	14.56	0.00	2.248	11.15	0.00	2.0	98.0	0.0	2.37	1.88	0.61	0.73	—	6873	849	3	0	0	0	0	logfile

• ← previous
• Page 4 of 372
• next →