Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PPR	20446	2022-12-12	2019-07-08	3.5	3.62	—	3.6	0.009	1.16	0.0	0.06	14.83	0.01	2.032	11.55	1.28	10.1	89.8	0.1	-6.00	0.77	0.84	3.29	3.6	0.003	0.69	0.0	0.04	16.93	0.00	2.051	6.06	0.59	5.9	94.1	0.0	-1.69	1.08	0.77	0.84	2.60	11995	1594	4	32	2	0	0	logfile
✘	5GW4	9540	2022-12-19	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.57	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	6PWW	20513	2022-12-18	2019-07-23	4.4	5.49	—	4.5	0.004	0.64	0.0	0.04	25.69	0.00	1.996	22.00	1.22	4.5	95.5	0.0	-2.62	0.92	0.84	—	4.5	0.005	0.72	0.0	0.04	25.25	0.00	2.055	28.30	0.00	5.3	94.7	0.0	-1.27	0.69	0.92	0.85	—	18174	1550	14	292	1	0	0	logfile
✔	6RUo	10007	2022-12-22	2019-05-28	3.5	3.56	—	4.0	0.007	1.05	0.0	0.06	13.11	0.01	2.170	8.06	0.40	10.5	89.4	0.1	-4.99	0.53	0.29	0.05	3.5	0.004	0.81	0.0	0.05	17.45	0.00	2.062	19.29	0.53	8.4	91.6	0.0	-2.64	2.43	0.68	0.60	0.65	50792	6086	26	93	8	0	0	logfile
✔	6SSX	10307	2022-12-11	2019-09-09	2.98	3.11	—	3.1	0.008	0.94	0.0	0.07	14.94	0.00	2.424	6.14	4.26	12.6	87.4	0.0	-4.73	0.65	0.82	4.81	3.0	0.007	0.76	0.0	0.05	17.03	0.00	2.213	12.88	4.04	12.6	87.4	0.0	-5.11	0.78	0.65	0.85	4.46	4900	730	10	0	0	0	0	logfile
✘	6oMB	20124	2022-12-18	2019-04-18	3.7	3.91	—	3.8	0.010	0.96	0.0	0.05	15.28	0.03	1.515	4.75	0.18	7.3	92.7	0.0	-4.26	0.75	0.81	0.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21815	2775	11	0	48	0	0	logfile
✔	6F2D	4173	2022-12-12	2017-11-24	4.2	4.27	4.05	4.1	0.010	1.19	0.0	0.05	9.30	0.01	2.023	26.32	0.51	16.3	83.0	0.7	-6.32	0.71	0.72	—	4.1	0.004	0.88	0.0	0.04	12.99	0.01	2.116	13.80	0.00	7.9	91.5	0.6	0.23	2.03	0.75	0.77	—	12541	1629	10	0	0	0	0	logfile
✔	6PPL	20442	2022-12-11	2019-07-08	3.02	3.14	—	3.1	0.010	0.99	0.0	0.25	14.17	0.01	1.917	3.57	0.23	2.7	97.3	0.0	-6.00	0.74	0.86	4.10	3.1	0.004	0.65	0.0	0.05	16.12	0.00	2.116	6.52	0.23	2.8	97.2	0.0	-0.72	1.92	0.74	0.88	3.40	8155	980	6	0	4	0	0	logfile
✔	6N3C	0334	2022-12-11	2018-11-14	3.3	3.53	—	3.5	0.009	1.31	0.0	0.07	14.00	0.00	2.387	18.47	0.00	11.5	88.5	0.0	-5.01	0.52	0.83	4.06	3.5	0.003	0.68	0.0	0.04	15.70	0.00	2.372	12.69	1.58	8.2	91.8	0.0	-3.77	2.40	0.52	0.83	3.93	4260	640	20	0	0	0	0	logfile
✔	6B3o	7040	2022-12-11	2017-09-22	4.1	4.04	—	4.1	0.024	1.82	0.0	0.11	10.99	0.01	2.285	2.28	0.34	2.1	97.6	0.3	1.14	0.69	0.76	—	4.0	0.004	0.71	0.0	0.04	14.21	0.00	2.135	10.06	0.00	3.9	95.8	0.3	1.00	1.66	0.71	0.76	—	7980	1032	3	0	0	0	0	logfile
✔	6N37	9339	2022-12-11	2018-11-14	3.8	3.51	—	4.2	0.009	1.42	0.0	0.06	16.98	0.01	2.399	13.15	0.00	14.7	85.3	0.0	-5.92	0.51	0.77	3.18	3.6	0.004	0.78	0.0	0.04	18.43	0.00	2.266	20.72	0.80	11.2	88.8	0.0	-5.14	0.89	0.52	0.77	2.42	2580	360	10	0	0	0	0	logfile
✔	6N3B	9350	2022-12-11	2018-11-14	3.8	3.75	—	4.0	0.010	1.21	0.0	0.05	11.40	0.01	2.253	20.70	0.00	13.7	86.3	0.0	-5.17	0.41	0.71	2.90	4.0	0.005	0.87	0.0	0.04	16.51	0.01	2.102	26.34	1.51	13.2	86.8	0.0	-5.29	1.48	0.42	0.71	1.88	2735	385	10	0	0	0	0	logfile
✔	5AJ3	2913	2022-12-13	2015-02-20	3.6	3.73	—	3.7	0.018	1.27	0.0	0.05	18.73	0.01	1.844	24.09	10.71	3.9	96.0	0.1	-3.65	0.86	0.86	2.03	3.6	0.004	0.70	0.0	0.04	18.12	0.00	1.816	14.88	0.83	4.5	95.4	0.0	0.15	1.61	0.84	0.82	1.66	66363	4665	44	1102	1006	118	0	logfile
✔	6D7S	7824	2022-12-14	2018-04-25	4.34	4.44	—	4.3	0.007	1.16	0.0	0.06	11.86	0.01	2.248	7.37	1.17	12.1	87.8	0.2	-5.61	0.77	0.79	—	4.3	0.003	0.84	0.0	0.04	13.61	0.00	2.202	15.84	0.10	10.1	89.9	0.0	-1.23	1.42	0.77	0.80	—	19018	2372	4	0	0	0	0	logfile
✔	6PEo	20328	2022-12-11	2019-06-20	3.3	3.52	—	3.6	0.003	0.54	0.0	0.05	13.06	0.01	2.492	10.62	0.00	9.7	90.3	0.0	-1.64	0.41	0.82	3.20	3.6	0.006	0.64	0.0	0.06	15.74	0.00	2.435	9.07	0.00	8.1	91.9	0.0	-2.61	1.64	0.42	0.83	4.88	2205	320	5	0	0	0	0	logfile
✔	6DZM	8936	2022-12-13	2018-07-05	4.29	4.66	—	4.3	0.008	0.91	0.0	0.05	9.66	0.01	2.058	8.59	0.00	13.6	86.4	0.0	-4.76	0.77	0.80	—	4.3	0.003	0.70	0.0	0.04	11.90	0.00	2.190	14.07	0.00	9.3	90.7	0.0	-1.69	0.94	0.78	0.83	—	13584	1695	24	0	27	0	0	logfile
✔	6PES	20331	2022-12-11	2019-06-20	3.6	3.82	—	4.0	0.009	0.70	0.0	0.06	12.87	0.01	2.432	11.45	0.00	12.3	87.7	0.0	-1.79	0.38	0.78	1.73	4.0	0.003	0.59	0.0	0.05	14.73	0.00	2.341	7.11	0.00	6.5	93.5	0.0	-2.43	0.56	0.43	0.81	2.65	4040	590	10	0	0	0	0	logfile
✔	6PDT	20309	2022-12-16	2019-06-19	3.8	3.95	—	3.9	0.022	2.06	0.0	0.21	11.05	0.01	1.771	1.30	0.00	1.9	97.7	0.4	0.40	0.73	0.73	1.74	3.9	0.005	0.94	0.0	0.04	14.91	0.00	1.722	11.32	0.23	6.9	93.1	0.0	0.42	2.53	0.76	0.79	1.58	31364	2000	8	0	12	0	15636	logfile
✔	6UFR	20759	2022-12-11	2019-09-24	2.5	2.80	—	2.8	0.012	0.96	0.0	0.07	13.71	0.01	2.209	5.48	0.00	6.6	93.4	0.0	-1.99	0.50	0.87	5.55	2.8	0.004	0.63	0.0	0.06	17.00	0.00	2.402	2.46	2.95	4.8	95.2	0.0	-0.87	0.98	0.51	0.89	5.06	4420	630	20	0	0	90	0	logfile
✔	6BFU	7094	2022-12-15	2017-10-27	3.5	3.80	—	3.7	0.018	1.32	0.0	0.09	10.46	0.01	2.005	1.54	0.35	3.2	96.6	0.2	0.52	0.86	0.84	2.39	3.7	0.004	0.61	0.0	0.04	13.49	0.00	2.143	8.19	0.31	3.7	96.3	0.0	0.52	0.72	0.82	0.85	2.67	24480	2892	45	0	168	0	0	logfile

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