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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8EP0 | 28494 | 2024-03-19 | 2022-10-04 | 4.9 | 6.49 | 5.04 | 5.3 | 0.004 | 0.79 | 0.0 | 0.05 | 12.19 | 0.01 | 2.237 | 11.79 | 0.00 | 3.6 | 96.4 | 0.0 | 0.06 | 0.70 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24408 | 3372 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RL7 | 24519 | 2024-03-22 | 2021-07-23 | 3.0 | 3.48 | — | 3.0 | 0.003 | 0.68 | 0.0 | 0.04 | 15.61 | 0.00 | 2.057 | 11.36 | 0.00 | 6.2 | 93.8 | 0.0 | -1.11 | 0.85 | 0.82 | 2.05 | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 16.02 | 0.00 | 1.975 | 9.56 | 1.57 | 5.0 | 95.0 | 0.0 | -0.19 | 0.41 | 0.88 | 0.87 | 2.10 | 34950 | 4422 | 12 | 0 | 24 | 0 | 0 | logfile |
✔ | 7FHK | 31585 | 2024-03-16 | 2021-07-29 | 3.3 | 3.56 | — | 3.6 | 0.004 | 0.60 | 0.0 | 0.04 | 12.53 | 0.00 | 2.210 | 8.33 | 0.00 | 2.1 | 97.9 | 0.0 | 1.22 | 0.66 | 0.83 | 2.28 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 14.78 | 0.00 | 2.243 | 7.42 | 1.18 | 3.1 | 96.9 | 0.0 | 2.44 | 0.45 | 0.65 | 0.83 | 2.35 | 11058 | 1326 | 6 | 0 | 28 | 0 | 0 | logfile |
✔ | 7EJ7 | 31154 | 2024-03-11 | 2021-04-01 | 3.41 | 3.67 | — | 3.5 | 0.006 | 0.91 | 0.0 | 0.04 | 18.10 | 0.00 | 1.860 | 43.57 | 1.75 | 10.8 | 88.2 | 1.0 | -4.75 | 0.57 | 0.87 | 3.13 | 3.5 | 0.004 | 0.66 | 0.0 | 0.04 | 18.82 | 0.00 | 1.984 | 12.15 | 2.01 | 9.8 | 89.7 | 0.5 | -0.60 | 1.15 | 0.55 | 0.87 | 2.56 | 7773 | 948 | 8 | 18 | 6 | 0 | 0 | logfile |
✔ | 6C9K | 7437 | 2024-03-23 | 2018-01-26 | 3.49 | 5.32 | — | 5.0 | 0.016 | 1.08 | 0.0 | 0.07 | 11.33 | 0.01 | 2.388 | 0.77 | 0.00 | 0.6 | 99.4 | 0.0 | 1.74 | 0.55 | 0.28 | 0.81 | 5.0 | 0.002 | 0.57 | 0.0 | 0.04 | 14.77 | 0.00 | 2.147 | 14.48 | 1.69 | 1.3 | 98.7 | 0.0 | 3.59 | 0.88 | 0.81 | 0.65 | -0.19 | 37632 | 4923 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HTT | 35017 | 2024-03-10 | 2022-12-21 | 3.6 | 4.33 | 3.64 | 4.1 | 0.005 | 0.69 | 0.0 | 0.09 | 19.58 | 0.00 | 2.197 | 27.23 | 0.58 | 6.0 | 94.0 | 0.0 | 1.48 | 0.66 | 0.82 | 2.08 | 4.1 | 0.003 | 0.67 | 0.0 | 0.04 | 15.86 | 0.00 | 2.231 | 8.87 | 2.90 | 6.5 | 93.5 | 0.0 | 1.06 | 2.62 | 0.66 | 0.83 | 1.69 | 3292 | 389 | 5 | 0 | 8 | 0 | 0 | logfile |
✔ | 6ZQG | 11363 | 2024-03-17 | 2020-07-09 | 3.5 | 3.60 | — | 3.5 | 0.019 | 1.40 | 0.0 | 0.07 | 21.89 | 0.01 | 1.552 | 7.45 | 0.19 | 8.3 | 91.5 | 0.2 | -2.91 | 0.80 | 0.79 | 3.28 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 21.44 | 0.00 | 1.939 | 8.47 | 3.73 | 5.6 | 94.3 | 0.0 | -0.09 | 0.46 | 0.81 | 0.80 | 2.10 | 80072 | 7391 | 41 | 1418 | 42 | 0 | 0 | logfile |
✔ | 6HRM | 0261 | 2024-03-22 | 2018-09-27 | 2.96 | 3.03 | — | 3.0 | 0.010 | 1.02 | 0.0 | 0.17 | 22.74 | 0.02 | 2.029 | 3.00 | 0.49 | 5.2 | 94.8 | 0.1 | -4.48 | 0.73 | 0.83 | 3.89 | 3.0 | 0.006 | 0.74 | 0.0 | 0.04 | 22.71 | 0.01 | 1.829 | 6.91 | 5.01 | 5.4 | 94.6 | 0.0 | -1.55 | 1.13 | 0.73 | 0.84 | 2.99 | 145179 | 5972 | 64 | 4570 | 438 | 2 | 0 | logfile |
✔ | 7KAT | 22783 | 2024-03-15 | 2020-10-01 | 4.4 | 5.04 | 4.41 | 4.5 | 0.002 | 0.51 | 0.0 | 0.04 | 11.32 | 0.00 | 2.185 | 6.90 | 0.00 | 1.9 | 98.1 | 0.0 | -0.63 | 0.65 | 0.83 | — | 4.5 | 0.002 | 0.56 | 0.0 | 0.04 | 12.05 | 0.00 | 2.143 | 9.16 | 0.00 | 2.6 | 97.4 | 0.0 | 2.29 | 1.32 | 0.65 | 0.85 | — | 10431 | 1340 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QPC | 14117 | 2024-03-15 | 2022-01-03 | 3.44 | 3.64 | 3.38 | 3.7 | 0.004 | 0.62 | 0.0 | 0.04 | 15.00 | 0.00 | 2.199 | 5.74 | 0.00 | 2.5 | 97.5 | 0.0 | 1.61 | 0.59 | 0.79 | 1.03 | 3.7 | 0.003 | 0.55 | 0.0 | 0.04 | 15.50 | 0.00 | 2.108 | 7.50 | 0.18 | 2.9 | 97.1 | 0.0 | 1.29 | 0.31 | 0.57 | 0.80 | 1.52 | 10830 | 654 | 6 | 0 | 4 | 62 | 5540 | logfile |
✔ | 7TKH | 25969 | 2024-03-18 | 2022-01-17 | 4.4 | 7.29 | 4.45 | 4.2 | 0.019 | 2.19 | 0.0 | 0.00 | 6.81 | 0.01 | 2.385 | 0.08 | 0.00 | 3.9 | 94.7 | 1.4 | -0.35 | 0.59 | 0.62 | — | 4.2 | 0.018 | 1.32 | 0.0 | 0.00 | 7.42 | 0.01 | 1.974 | 32.32 | 0.00 | 15.1 | 84.5 | 0.3 | -2.28 | 1.70 | 0.83 | 0.84 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZJ5 | 14741 | 2024-03-15 | 2022-04-08 | 4.55 | 5.91 | 5.09 | 4.4 | 0.002 | 0.65 | 0.0 | 0.04 | 23.36 | 0.00 | 2.256 | 0.50 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.92 | 0.85 | — | 4.5 | 0.008 | 0.84 | 0.0 | 0.04 | 26.06 | 0.01 | 1.650 | 66.01 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.95 | 0.94 | 0.90 | — | 12014 | 0 | 1 | 374 | 1 | 0 | 4030 | logfile |
✔ | 6SWA | 10321 | 2024-03-18 | 2019-09-20 | 3.1 | 3.53 | — | 3.4 | 0.002 | 0.45 | 0.0 | 0.03 | 22.58 | 0.00 | 1.115 | 10.82 | 0.43 | 4.2 | 95.6 | 0.2 | -2.39 | 0.68 | 0.83 | 2.07 | 3.4 | 0.005 | 0.63 | 0.0 | 0.04 | 23.06 | 0.00 | 1.788 | 12.76 | 5.50 | 6.0 | 93.9 | 0.0 | -0.51 | 1.44 | 0.70 | 0.87 | 2.05 | 138160 | 6739 | 60 | 3888 | 250 | 0 | 0 | logfile |
✔ | 6XMQ | 22261 | 2024-03-11 | 2020-06-30 | 3.7 | 4.26 | 3.79 | 4.0 | 0.006 | 0.66 | 0.0 | 0.04 | 13.16 | 0.00 | 1.660 | 6.11 | 0.00 | 3.7 | 96.3 | 0.0 | -1.63 | 0.72 | 0.85 | 1.50 | 4.0 | 0.003 | 0.54 | 0.0 | 0.04 | 14.93 | 0.00 | 1.998 | 6.47 | 1.80 | 2.9 | 97.1 | 0.0 | 0.70 | 1.27 | 0.72 | 0.85 | 1.17 | 8362 | 1085 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7PG9 | 13389 | 2024-03-25 | 2021-08-13 | 3.7 | 4.05 | — | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 7.81 | 0.00 | 2.144 | 8.56 | 0.02 | 2.9 | 97.0 | 0.1 | -2.89 | 0.85 | 0.79 | 2.74 | 3.7 | 0.004 | 0.77 | 0.0 | 0.04 | 14.02 | 0.00 | 2.147 | 11.98 | 2.20 | 2.8 | 97.2 | 0.0 | 0.75 | 0.90 | 0.89 | 0.86 | 2.38 | 45326 | 6195 | 28 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RWX | 10045 | 2024-03-15 | 2019-06-06 | 3.55 | 3.70 | 3.34 | 3.6 | 0.009 | 0.89 | 0.0 | 0.06 | 9.10 | 0.01 | 2.192 | 3.33 | 0.00 | 8.3 | 91.7 | 0.0 | -2.76 | 0.81 | 0.86 | 3.14 | 3.6 | 0.003 | 0.58 | 0.0 | 0.04 | 15.73 | 0.00 | 2.152 | 7.95 | 3.01 | 5.5 | 94.5 | 0.0 | 0.84 | 2.06 | 0.76 | 0.87 | 2.28 | 70968 | 8784 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NHX | 12342 | 2024-03-22 | 2021-02-11 | 3.23 | 3.85 | — | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 15.18 | 0.01 | 1.869 | 9.83 | 0.00 | 4.7 | 95.2 | 0.1 | -2.68 | 0.84 | 0.78 | 2.44 | 3.6 | 0.004 | 0.59 | 0.0 | 0.04 | 16.10 | 0.00 | 1.973 | 9.05 | 0.43 | 4.0 | 95.9 | 0.0 | 0.37 | 1.12 | 0.84 | 0.83 | 2.30 | 34661 | 2121 | 5 | 23 | 0 | 0 | 17149 | logfile |
✔ | 6XWN | 10632 | 2024-03-14 | 2020-01-24 | 3.47 | 4.19 | — | 3.9 | 0.004 | 0.61 | 0.0 | 0.04 | 15.89 | 0.00 | 2.121 | 11.01 | 8.00 | 3.3 | 96.7 | 0.0 | -2.83 | 0.70 | 0.77 | 1.38 | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 16.08 | 0.00 | 2.172 | 10.86 | 2.00 | 2.3 | 97.7 | 0.0 | 1.66 | 0.55 | 0.72 | 0.85 | 0.64 | 9547 | 1276 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 7ZDR | 14667 | 2024-03-14 | 2022-03-29 | 3.05 | 3.23 | 2.94 | 3.2 | 0.006 | 0.71 | 0.0 | 0.04 | 15.07 | 0.00 | 2.031 | 8.19 | 0.00 | 1.9 | 98.1 | 0.0 | -2.22 | 0.75 | 0.88 | 3.23 | 3.2 | 0.003 | 0.56 | 0.0 | 0.04 | 15.69 | 0.00 | 2.045 | 7.09 | 1.39 | 2.1 | 97.9 | 0.0 | 1.29 | 0.36 | 0.74 | 0.89 | 2.27 | 9014 | 1158 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 7TKo | 25976 | 2024-03-18 | 2022-01-17 | 4.8 | 7.71 | 5.39 | 4.4 | 0.019 | 2.23 | 0.0 | 0.00 | 6.74 | 0.01 | 2.314 | 0.12 | 0.00 | 4.8 | 93.9 | 1.4 | -0.54 | 0.62 | 0.65 | — | 4.4 | 0.004 | 0.84 | 0.0 | 0.00 | 5.80 | 0.00 | 2.139 | 12.52 | 0.00 | 10.1 | 89.6 | 0.2 | -0.46 | 0.84 | 0.84 | 0.82 | — | 20229 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |