Table showing results for November 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XM4	22255	2021-11-03	2020-06-29	2.9	3.01	2.91	3.0	0.010	1.04	0.0	0.07	14.34	0.01	2.223	3.01	0.40	6.8	93.1	0.1	-3.45	0.70	0.84	3.47	3.0	0.007	0.79	0.0	0.04	15.75	0.00	2.149	5.25	1.53	5.2	94.8	0.0	-1.04	0.42	0.70	0.83	2.83	25398	3143	24	0	61	0	0	logfile
✔	6ZTP	11423	2021-11-07	2020-07-20	3.0	2.63	3.07	2.9	0.013	1.11	0.0	0.06	16.31	0.02	0.284	6.58	5.10	5.8	93.5	0.7	-2.13	0.81	0.86	2.80	3.0	0.004	0.71	2.0	0.04	15.80	0.01	1.165	9.98	3.28	4.0	95.9	0.1	-0.08	2.17	0.82	0.88	2.34	172846	8886	79	4793	491	0	0	logfile
✔	6ZU1	11426	2021-11-07	2020-07-21	3.0	2.64	3.07	2.9	0.013	1.11	0.0	0.06	16.30	0.02	1.042	6.42	5.10	5.8	93.5	0.7	-2.13	0.81	0.86	2.82	3.0	0.002	0.63	0.0	0.03	15.69	0.01	1.227	10.14	3.15	3.6	96.4	0.0	-0.03	2.18	0.81	0.87	2.19	172846	8886	79	4793	491	0	0	logfile
✔	6o8Z	0659	2021-11-05	2019-03-12	3.49	3.99	—	3.6	0.010	0.88	0.0	0.05	16.68	0.01	1.940	17.12	15.40	18.5	81.1	0.3	-5.38	0.87	0.86	1.21	3.5	0.003	0.63	0.0	0.03	15.77	0.01	2.020	12.13	0.64	10.4	89.5	0.1	-2.52	0.57	0.87	0.86	1.19	138498	5235	53	4542	4	0	0	logfile
✔	6XF6	22162	2021-11-03	2020-06-15	4.0	4.88	4.07	4.1	0.004	0.77	0.0	0.06	11.35	0.01	2.249	3.69	0.21	2.6	97.4	0.0	0.03	0.85	0.78	—	4.2	0.003	0.57	0.0	0.04	12.84	0.00	2.180	10.54	0.09	2.8	97.2	0.0	0.55	2.24	0.87	0.84	—	22938	2928	18	0	59	0	0	logfile
✔	6ZTM	11420	2021-11-07	2020-07-20	3.3	3.40	3.35	3.2	0.014	1.18	0.0	0.07	16.40	0.02	1.048	8.77	6.58	6.3	93.2	0.5	-2.22	0.87	0.83	1.41	3.2	0.007	0.77	1.0	0.04	15.65	0.01	1.068	15.30	0.29	4.8	95.2	0.0	-0.31	1.29	0.88	0.86	1.56	171689	8739	70	4797	424	0	0	logfile
✔	6Z43	11068	2021-11-04	2020-05-22	3.3	3.43	—	3.4	0.005	0.56	0.0	0.05	10.79	0.00	2.094	4.31	0.68	3.5	96.5	0.0	-0.78	0.78	0.84	3.41	3.4	0.005	0.73	0.0	0.04	13.48	0.00	2.110	8.37	0.04	2.9	97.1	0.0	0.58	1.34	0.79	0.88	2.57	26725	3351	29	0	66	0	0	logfile
✘	6YJ5	10816	2021-11-01	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.22	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2061	306	1	0	0	0	0	logfile
✔	6YJ4	10815	2021-11-03	2020-04-02	2.7	2.35	2.73	2.6	0.011	1.10	0.0	0.66	14.62	0.01	2.031	2.87	0.03	4.1	95.8	0.0	-2.17	0.58	0.79	4.22	2.6	0.006	1.05	0.0	0.18	16.78	0.00	1.378	7.09	1.42	3.2	96.8	0.0	0.92	0.59	0.63	0.84	3.64	66311	8126	94	0	50	275	0	logfile
✔	7JJJ	22354	2021-11-01	2020-07-26	4.5	4.63	4.47	4.5	0.020	1.77	0.0	0.13	9.94	0.01	2.377	0.90	0.07	2.0	98.0	0.0	0.68	0.79	0.80	—	4.5	0.003	0.66	0.0	0.05	12.11	0.00	2.158	11.50	0.00	4.4	95.6	0.0	0.04	1.48	0.79	0.83	—	54614	6674	92	0	182	0	0	logfile
✘	6KNG	0731	2021-11-01	2019-08-05	2.85	3.15	—	3.1	0.005	0.65	0.0	0.05	14.34	0.00	2.093	4.97	3.68	0.9	99.1	0.0	-2.31	0.83	0.91	4.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7749	1002	6	0	6	0	0	logfile
✔	7JM7	22389	2021-11-04	2020-07-31	2.82	3.04	—	3.0	0.004	0.78	0.0	0.19	13.28	0.01	1.957	5.59	1.17	2.1	97.9	0.0	1.63	0.53	0.76	2.53	2.9	0.004	0.66	0.0	0.12	15.05	0.00	1.924	7.42	1.11	2.6	97.4	0.0	1.54	0.59	0.55	0.80	2.44	28596	1802	16	0	38	36	14054	logfile
✔	6VWG	21415	2021-11-02	2020-02-19	3.21	3.61	—	3.5	0.007	0.88	0.0	0.05	14.60	0.01	1.873	4.30	1.40	11.4	88.6	0.0	-2.78	0.71	0.72	2.81	3.5	0.003	0.66	0.0	0.04	16.27	0.00	2.063	8.67	0.14	9.6	90.4	0.0	-2.38	1.43	0.72	0.75	2.78	12751	800	5	0	4	0	6282	logfile
✔	6PC8	20299	2021-11-03	2019-06-16	2.9	3.26	—	3.1	0.006	0.48	0.0	0.03	12.75	0.02	1.931	3.25	2.62	7.2	92.7	0.1	-4.11	0.71	0.86	3.45	3.1	0.004	0.62	0.0	0.03	14.83	0.01	2.112	9.62	3.27	7.3	92.6	0.1	-1.60	1.26	0.72	0.88	3.30	72169	967	8	3015	1	0	0	logfile
✔	7JMJ	22396	2021-11-03	2020-07-31	4.5	5.51	—	4.3	0.007	1.08	0.0	0.05	10.58	0.01	1.373	9.86	0.62	11.3	88.5	0.3	-4.67	0.56	0.32	—	4.3	0.003	0.69	0.0	0.04	11.36	0.00	2.050	13.08	0.03	8.9	91.0	0.1	-1.61	1.53	0.78	0.63	—	120756	13500	12	0	3608	0	0	logfile
✘	6X0L	21978	2021-11-01	2020-05-16	3.9	3.69	—	3.6	0.005	0.85	0.0	0.05	18.72	0.00	2.067	21.30	0.13	5.0	95.0	0.0	-1.57	0.59	0.67	1.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8037	894	7	40	0	0	0	logfile
✔	6M3X	30073	2021-11-02	2020-03-04	2.24	2.31	—	2.3	0.006	0.81	0.0	0.05	13.95	0.01	2.222	3.45	0.37	3.2	96.8	0.0	-2.65	0.78	0.89	7.35	2.3	0.006	0.74	0.0	0.05	17.16	0.01	2.314	6.11	1.79	3.6	96.4	0.0	0.01	0.42	0.79	0.91	6.76	62387	7440	72	0	24	2243	0	logfile
✔	6S8E	10119	2021-11-02	2019-07-09	3.1	4.08	3.34	3.7	0.006	0.75	0.0	0.05	15.02	0.00	2.055	19.34	0.16	14.8	84.9	0.2	-4.68	0.79	0.77	1.91	3.9	0.007	0.98	0.0	0.05	17.03	0.01	1.873	27.85	0.70	13.2	86.8	0.1	-2.52	2.17	0.76	0.82	1.53	62224	7502	36	91	1	0	0	logfile
✔	6PV6	20486	2021-11-03	2019-07-19	4.5	5.79	—	3.8	0.006	1.04	0.0	0.05	10.65	0.01	1.373	9.43	0.31	11.0	88.9	0.1	-4.72	0.60	0.40	—	4.1	0.003	0.69	0.0	0.04	11.53	0.00	2.015	14.47	0.06	8.8	91.1	0.0	-1.84	1.52	0.82	0.73	—	120756	13500	12	0	3608	0	0	logfile
✔	6UBM	20710	2021-11-23	2019-09-12	3.3	4.23	3.63	4.1	0.007	0.84	0.0	0.05	9.74	0.01	0.759	48.25	0.22	4.0	96.0	0.0	-3.01	0.70	0.67	0.37	4.0	0.004	0.73	0.0	0.04	16.06	0.00	2.038	14.78	0.52	3.5	96.5	0.0	-1.31	2.02	0.72	0.85	2.87	248160	31140	60	0	0	0	0	logfile

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