Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BC6	12140	2023-09-27	2020-12-18	3.2	3.48	3.20	3.4	0.008	0.90	0.0	0.05	13.65	0.01	2.145	9.76	0.92	7.0	93.0	0.0	-1.77	0.64	0.85	2.92	3.4	0.004	0.65	0.0	0.04	15.20	0.00	2.200	8.93	0.46	4.2	95.8	0.0	0.13	0.29	0.59	0.84	1.99	4178	549	2	0	0	0	0	logfile
✔	7LKH	23408	2023-09-27	2021-02-02	3.5	3.06	—	3.6	0.006	0.94	0.0	0.05	13.23	0.01	1.903	8.34	0.22	5.5	94.5	0.0	-0.99	0.64	0.78	3.39	3.5	0.004	0.73	0.0	0.05	15.48	0.00	2.177	6.77	0.65	5.9	94.1	0.0	-0.34	0.47	0.66	0.80	3.21	4179	516	4	0	2	0	0	logfile
✔	8GVE	34291	2023-09-28	2022-09-15	3.17	3.38	3.19	3.4	0.003	0.62	0.0	0.04	14.33	0.01	2.113	5.93	0.00	5.7	94.3	0.0	0.31	0.64	0.80	1.68	3.4	0.003	0.57	0.0	0.04	15.91	0.00	2.236	6.11	0.11	5.7	94.3	0.0	0.93	0.27	0.63	0.81	1.12	8054	1020	2	0	0	0	0	logfile
✘	8GVC	34290	2023-09-28	2022-09-14	2.89	3.10	2.90	3.2	0.002	0.48	0.0	0.04	14.66	0.00	1.670	13.40	1.14	2.0	97.8	0.2	2.06	0.64	0.82	2.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8080	1022	4	0	2	0	0	logfile
✔	7L7Q	23216	2023-09-28	2020-12-30	3.7	4.37	—	4.0	0.005	0.91	0.0	0.05	15.54	0.00	1.873	23.85	0.16	10.2	89.5	0.3	-4.40	0.84	0.81	0.86	4.0	0.004	0.97	0.0	0.05	17.50	0.00	2.055	22.26	0.16	8.2	91.8	0.0	-0.37	1.44	0.84	0.79	0.98	5619	687	3	0	0	0	0	logfile
✔	6GC6	4381	2023-09-30	2018-04-17	4.3	5.02	—	4.5	0.003	0.66	0.0	0.03	12.88	0.00	2.229	5.26	0.00	6.0	93.9	0.1	-3.94	0.74	0.57	—	4.5	0.007	0.68	0.0	0.04	15.59	0.00	1.991	27.18	0.00	9.2	90.8	0.0	-2.08	2.14	0.91	0.85	—	61404	2118	19	2092	0	0	0	logfile
✔	6XYo	10650	2023-09-28	2020-01-30	2.6	2.79	2.31	2.7	0.008	0.74	0.0	0.06	12.93	0.00	2.300	5.78	0.93	2.6	97.4	0.0	-2.90	0.46	0.89	5.98	2.7	0.007	0.62	0.0	0.05	17.92	0.00	2.105	4.45	2.22	4.4	95.6	0.0	-1.84	0.96	0.48	0.91	4.74	5490	800	10	0	0	0	0	logfile
✔	8HDS	34679	2023-09-27	2022-11-06	3.57	3.28	3.59	3.4	0.007	1.11	0.0	0.06	10.70	0.01	2.312	4.13	0.63	10.9	89.1	0.0	-6.20	0.55	0.77	2.49	3.4	0.004	0.71	0.0	0.04	16.09	0.00	2.083	10.70	0.96	9.7	90.3	0.0	-2.59	1.26	0.56	0.78	1.67	53532	6864	24	0	0	0	0	logfile
✔	7V0S	26949	2023-09-30	2022-05-10	2.5	2.21	2.53	2.3	0.004	0.73	0.0	0.05	16.59	0.00	2.208	5.09	2.55	1.7	98.2	0.1	1.73	0.70	0.88	4.46	2.3	0.004	0.59	0.0	0.04	16.67	0.00	2.190	6.46	2.36	1.9	98.1	0.0	1.84	0.48	0.70	0.89	4.58	10303	1315	10	0	3	178	0	logfile
✘	7SXY	25510	2023-09-28	2021-11-24	2.79	3.53	—	3.2	0.005	0.84	0.0	0.06	13.35	0.01	2.303	2.81	0.00	1.3	98.7	0.0	-0.48	0.82	0.87	3.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6557	797	4	0	7	0	0	logfile
✔	7V0X	26952	2023-09-27	2022-05-11	3.0	2.83	2.92	2.9	0.002	0.63	0.0	0.04	19.06	0.01	2.211	6.52	5.05	4.0	96.0	0.0	0.72	0.61	0.88	3.78	2.9	0.002	0.53	0.0	0.04	19.08	0.00	2.176	7.23	4.38	4.9	95.1	0.0	1.77	0.47	0.60	0.88	3.17	2818	375	1	0	0	0	0	logfile
✔	7XD3	33134	2023-09-29	2022-03-26	4.05	4.16	—	3.8	0.003	0.62	0.0	0.04	16.04	0.00	1.960	1.21	0.00	0.0	0.0	0.0	—	0.85	0.74	—	3.9	0.007	0.80	0.0	0.04	17.33	0.01	1.680	17.06	0.00	0.0	0.0	0.0	—	1.79	0.87	0.82	—	9062	0	1	423	28	0	0	logfile
✘	7QFQ	13947	2023-09-30	2021-12-06	3.6	3.83	3.58	4.0	0.002	0.54	0.0	0.04	12.93	0.00	2.177	8.31	0.00	5.4	94.6	0.0	-0.70	0.65	0.70	1.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10659	1291	1	0	0	0	0	logfile
✔	7NZM	12665	2023-09-29	2021-03-24	3.96	6.56	4.22	4.2	0.007	1.12	0.0	0.06	13.94	0.01	1.774	11.10	0.00	3.8	96.2	0.0	-1.56	0.77	0.51	-0.04	4.3	0.003	0.74	0.0	0.04	15.04	0.00	2.061	18.47	0.21	2.9	97.1	0.0	0.28	1.50	0.94	0.84	0.28	9109	1157	8	0	4	0	0	logfile
✔	8S9P	40241	2023-09-29	2023-03-29	3.8	4.16	3.92	4.0	0.005	0.82	0.0	0.05	17.16	0.01	2.024	21.44	1.88	9.3	90.5	0.2	-2.07	0.80	0.78	1.62	4.0	0.006	0.85	0.0	0.05	17.20	0.01	2.084	24.93	1.28	10.1	89.8	0.1	-2.31	0.99	0.80	0.79	1.61	9288	1189	3	0	0	0	0	logfile
✔	7Mo8	23920	2023-09-29	2021-05-01	4.5	3.94	—	3.6	0.008	1.02	0.0	0.05	16.58	0.01	2.070	31.26	0.00	9.8	90.2	0.0	-1.95	0.82	0.75	—	3.6	0.004	0.74	0.0	0.05	14.46	0.00	2.115	25.62	0.00	8.6	91.4	0.0	-1.94	2.28	0.83	0.76	—	9877	1250	3	0	6	0	0	logfile
✔	7F3X	31442	2023-09-28	2021-06-17	3.57	4.09	—	4.0	0.003	0.67	0.0	0.04	15.03	0.00	2.117	6.43	0.00	7.2	92.6	0.2	-0.61	0.63	0.83	2.27	4.0	0.003	0.66	0.0	0.04	16.64	0.00	2.114	8.18	0.51	7.5	92.3	0.2	0.20	0.97	0.58	0.81	1.58	7408	898	4	0	2	0	0	logfile
✔	7A2i	11625	2023-09-29	2020-08-18	3.3	3.94	3.40	3.8	0.004	0.62	0.0	0.04	12.87	0.00	2.232	6.57	0.00	7.0	93.0	0.0	-1.94	0.81	0.84	2.69	3.8	0.002	0.53	0.0	0.04	13.99	0.00	2.238	6.00	0.00	4.3	95.7	0.0	-0.30	1.20	0.82	0.85	2.44	9196	1217	2	0	1	0	0	logfile
✔	7PQX	13606	2023-09-29	2021-09-20	3.08	3.48	—	3.4	0.010	1.11	0.0	0.06	14.20	0.01	2.296	4.37	0.00	4.3	95.7	0.0	-2.13	0.69	0.85	2.92	3.4	0.004	0.63	0.0	0.04	15.53	0.00	2.140	9.13	0.73	3.5	96.5	0.0	1.41	0.94	0.69	0.87	2.34	9032	1160	2	0	0	0	0	logfile
✔	6TQE	10549	2023-09-30	2019-12-16	4.3	4.14	—	4.2	0.007	1.04	0.0	0.06	14.59	0.01	2.077	2.78	0.76	8.6	91.4	0.0	-6.13	0.76	0.89	—	4.2	0.002	0.61	0.0	0.04	13.69	0.00	2.010	4.66	0.00	5.1	94.9	0.0	-2.69	1.28	0.75	0.88	—	10076	1268	4	0	4	0	0	logfile

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