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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5GAQ | 8015 | 2022-04-06 | 2016-01-05 | 3.1 | 3.36 | — | 3.2 | 0.006 | 1.01 | 0.0 | 0.08 | 11.97 | 0.00 | 2.289 | 1.94 | 0.80 | 7.3 | 92.7 | 0.0 | -3.69 | 0.56 | 0.50 | 3.88 | 3.2 | 0.003 | 0.62 | 0.0 | 0.05 | 16.42 | 0.00 | 2.160 | 12.73 | 0.27 | 2.5 | 97.5 | 0.0 | -1.81 | 1.65 | 0.78 | 0.84 | 3.66 | 20574 | 2592 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U5o | 20651 | 2022-04-07 | 2019-08-28 | 3.7 | 3.81 | — | 3.8 | 0.005 | 0.78 | 0.0 | 0.04 | 14.70 | 0.01 | 2.093 | 5.81 | 0.00 | 0.0 | 100.0 | 0.0 | -4.22 | 0.65 | 0.75 | 1.93 | 3.8 | 0.004 | 0.67 | 0.0 | 0.04 | 16.92 | 0.01 | 1.902 | 10.26 | 0.27 | 8.4 | 91.6 | 0.0 | -1.39 | 1.53 | 0.68 | 0.80 | 2.18 | 26316 | 1623 | 5 | 0 | 0 | 0 | 13339 | logfile |
✔ | 6BZE | 7314 | 2022-04-05 | 2017-12-23 | 4.0 | 4.03 | — | 4.0 | 0.009 | 1.42 | 0.0 | 0.08 | 17.34 | 0.01 | 1.648 | 79.81 | 9.00 | 13.2 | 86.4 | 0.4 | -5.34 | 0.37 | 0.48 | — | 4.0 | 0.004 | 1.05 | 0.0 | 0.05 | 18.92 | 0.00 | 2.121 | 28.61 | 0.88 | 11.1 | 88.7 | 0.2 | -2.43 | 2.80 | 0.51 | 0.72 | — | 7072 | 848 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G2Y | 3332 | 2022-04-05 | 2016-04-16 | 4.5 | 4.38 | — | 3.8 | 0.001 | 0.22 | 0.0 | 0.01 | 11.90 | 0.00 | 2.269 | 2.32 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.28 | — | 3.7 | 0.007 | 1.01 | 0.0 | 0.05 | 23.66 | 0.01 | 1.957 | 72.02 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.26 | 0.89 | 0.78 | — | 13494 | 0 | 1 | 630 | 0 | 0 | 0 | logfile |
✔ | 6oLK | 20115 | 2022-04-06 | 2019-04-16 | 4.0 | 4.14 | — | 4.1 | 0.005 | 1.04 | 0.0 | 0.06 | 5.09 | 0.01 | 2.445 | 0.20 | 0.00 | 2.3 | 97.7 | 0.0 | -0.75 | 0.56 | 0.49 | — | 4.1 | 0.003 | 0.69 | 0.0 | 0.04 | 4.93 | 0.00 | 2.195 | 4.38 | 0.00 | 8.3 | 91.7 | 0.0 | -1.09 | 1.39 | 0.63 | 0.59 | — | 10323 | 2094 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iZV | 9758 | 2022-04-04 | 2018-12-20 | 4.2 | 4.27 | — | 4.2 | 0.005 | 0.90 | 0.0 | 0.05 | 10.55 | 0.01 | 2.170 | 5.77 | 0.00 | 4.9 | 95.1 | 0.0 | -3.60 | 0.68 | 0.81 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 12.41 | 0.00 | 1.991 | 11.90 | 0.00 | 5.2 | 94.8 | 0.0 | -0.81 | 1.02 | 0.70 | 0.82 | — | 5624 | 698 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 5LNK | 4093 | 2022-04-05 | 2016-08-04 | 3.9 | 3.95 | — | 3.9 | 0.007 | 1.05 | 0.0 | 1.04 | 10.81 | 0.01 | 2.038 | 25.39 | 0.32 | 12.6 | 86.9 | 0.5 | -4.85 | 0.76 | 0.79 | 1.96 | 3.9 | 0.013 | 1.93 | 4.0 | 0.32 | 16.79 | 0.01 | 1.686 | 26.78 | 0.72 | 11.1 | 88.5 | 0.4 | -1.76 | 0.90 | 0.77 | 0.79 | 0.83 | 63760 | 7918 | 61 | 0 | 144 | 0 | 0 | logfile |
✔ | 6SYT | 10347 | 2022-04-06 | 2019-10-01 | 3.45 | 3.54 | — | 3.5 | 0.018 | 1.23 | 0.0 | 0.16 | 9.36 | 0.01 | 1.903 | 3.04 | 0.13 | 7.5 | 92.4 | 0.1 | -5.37 | 0.69 | 0.81 | 4.11 | 3.5 | 0.002 | 0.60 | 0.0 | 0.04 | 13.79 | 0.00 | 2.060 | 5.04 | 0.25 | 3.1 | 96.9 | 0.0 | 1.00 | 0.64 | 0.71 | 0.84 | 2.38 | 18369 | 2369 | 5 | 0 | 216 | 0 | 0 | logfile |
✔ | 6NT9 | 0506 | 2022-04-05 | 2019-01-28 | 3.3 | 3.42 | — | 3.3 | 0.010 | 0.89 | 0.0 | 0.06 | 9.66 | 0.01 | 2.250 | 1.52 | 0.18 | 3.5 | 96.5 | 0.0 | -2.03 | 0.81 | 0.86 | 3.98 | 3.3 | 0.004 | 0.53 | 0.0 | 0.04 | 14.49 | 0.00 | 2.218 | 4.29 | 0.36 | 1.8 | 98.2 | 0.0 | 2.41 | 0.59 | 0.83 | 0.88 | 3.11 | 9906 | 1228 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N7W | 0365 | 2022-04-04 | 2018-11-28 | 4.5 | 4.41 | — | 4.1 | 0.006 | 0.79 | 0.0 | 0.05 | 19.17 | 0.02 | 2.125 | 3.09 | 0.46 | 4.4 | 95.5 | 0.1 | -2.55 | 0.85 | 0.81 | — | 4.1 | 0.003 | 0.60 | 0.0 | 0.04 | 19.51 | 0.00 | 1.993 | 11.76 | 0.00 | 4.9 | 95.1 | 0.0 | 1.25 | 1.92 | 0.87 | 0.84 | — | 7837 | 808 | 5 | 70 | 2 | 0 | 0 | logfile |
✔ | 6XTB | 10618 | 2022-04-04 | 2020-01-15 | 4.3 | 4.32 | — | 3.9 | 0.006 | 1.17 | 0.0 | 0.07 | 8.68 | 0.00 | 2.369 | 3.00 | 0.00 | 15.6 | 84.4 | 0.0 | -4.66 | 0.32 | 0.43 | — | 4.1 | 0.004 | 1.06 | 0.0 | 0.05 | 7.90 | 0.00 | 2.205 | 9.62 | 0.00 | 22.1 | 77.9 | 0.0 | -5.53 | 2.43 | 0.34 | 0.64 | — | 1161 | 235 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6D7T | 7825 | 2022-04-06 | 2018-04-25 | 4.44 | 4.50 | — | 4.4 | 0.010 | 1.49 | 0.0 | 0.07 | 14.79 | 0.01 | 1.997 | 11.64 | 5.48 | 10.7 | 88.8 | 0.5 | -5.38 | 0.73 | 0.82 | — | 4.4 | 0.003 | 0.91 | 0.0 | 0.04 | 13.38 | 0.00 | 2.163 | 17.71 | 0.05 | 8.8 | 91.1 | 0.1 | -1.96 | 0.82 | 0.73 | 0.80 | — | 19654 | 2444 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 6J5A | 0670 | 2022-04-04 | 2019-01-10 | 4.35 | 4.41 | — | 4.3 | 0.008 | 1.25 | 0.0 | 0.05 | 15.23 | 0.01 | 1.776 | 15.50 | 1.18 | 8.9 | 90.5 | 0.6 | -6.05 | 0.52 | 0.56 | — | 4.3 | 0.003 | 0.81 | 0.0 | 0.04 | 13.04 | 0.00 | 2.218 | 11.14 | 0.00 | 8.5 | 91.5 | 0.0 | -1.38 | 1.80 | 0.57 | 0.67 | — | 8544 | 1064 | 18 | 0 | 218 | 0 | 0 | logfile |
✔ | 6NCV | 0438 | 2022-04-05 | 2018-12-12 | 3.7 | 3.98 | — | 3.9 | 0.008 | 0.94 | 0.0 | 0.05 | 17.27 | 0.01 | 2.398 | 4.87 | 2.74 | 9.1 | 90.9 | 0.0 | -6.46 | 0.73 | 0.84 | 0.57 | 3.9 | 0.004 | 0.73 | 0.0 | 0.04 | 18.50 | 0.00 | 2.089 | 7.10 | 0.98 | 6.2 | 93.8 | 0.0 | -0.22 | 1.69 | 0.74 | 0.85 | 1.18 | 15456 | 1911 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FSZ | 4301 | 2022-04-08 | 2018-02-20 | 4.6 | 4.95 | — | 4.6 | 0.010 | 1.25 | 0.0 | 0.06 | 10.87 | 0.01 | 2.147 | 13.06 | 0.26 | 7.3 | 92.7 | 0.0 | -3.42 | 0.88 | 0.82 | — | 4.6 | 0.003 | 0.67 | 0.0 | 0.04 | 11.78 | 0.00 | 2.112 | 14.92 | 0.05 | 4.4 | 95.6 | 0.0 | -0.57 | 1.63 | 0.88 | 0.81 | — | 36972 | 4821 | 15 | 23 | 11 | 0 | 0 | logfile |
✔ | 6RTC | 4997 | 2022-04-06 | 2019-05-23 | 3.96 | 4.05 | 3.97 | 4.0 | 0.007 | 0.91 | 0.0 | 0.05 | 14.96 | 0.01 | 2.295 | 1.19 | 0.00 | 3.9 | 96.1 | 0.0 | -3.83 | 0.68 | 0.80 | 1.58 | 4.0 | 0.002 | 0.58 | 0.0 | 0.04 | 16.14 | 0.00 | 2.258 | 6.56 | 0.10 | 4.6 | 95.4 | 0.0 | 0.77 | 0.62 | 0.68 | 0.81 | 1.63 | 19374 | 1242 | 2 | 0 | 0 | 0 | 9804 | logfile |
✔ | 5W5F | 8767 | 2022-04-06 | 2017-06-15 | 3.4 | 3.16 | — | 3.6 | 0.007 | 0.91 | 0.0 | 0.06 | 12.30 | 0.01 | 2.171 | 6.53 | 0.00 | 4.1 | 95.9 | 0.0 | -2.49 | 0.66 | 0.71 | 0.69 | 3.5 | 0.004 | 0.80 | 0.0 | 0.05 | 17.00 | 0.00 | 2.108 | 17.95 | 1.01 | 4.9 | 95.1 | 0.0 | -1.93 | 2.79 | 0.73 | 0.84 | 2.39 | 23472 | 2934 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DJP | 7939 | 2022-04-04 | 2018-05-25 | 4.8 | 5.02 | — | 4.8 | 0.011 | 2.00 | 0.0 | 0.08 | 5.34 | 0.01 | 2.368 | 0.45 | 0.00 | 4.6 | 95.4 | 0.0 | -0.74 | 0.76 | 0.65 | — | 4.8 | 0.009 | 1.27 | 0.0 | 0.05 | 9.47 | 0.01 | 2.140 | 24.14 | 0.00 | 24.7 | 74.7 | 0.6 | -4.67 | 1.25 | 0.82 | 0.77 | — | 7307 | 1393 | 8 | 0 | 23 | 0 | 0 | logfile |
✔ | 6VVo | 21405 | 2022-04-07 | 2020-02-18 | 3.4 | 3.45 | — | 3.3 | 0.008 | 0.82 | 0.0 | 0.05 | 14.00 | 0.00 | 1.915 | 9.84 | 0.41 | 4.7 | 95.2 | 0.1 | -2.93 | 0.89 | 0.86 | 2.75 | 3.3 | 0.002 | 0.54 | 0.0 | 0.04 | 15.19 | 0.00 | 1.979 | 7.03 | 0.27 | 3.1 | 96.9 | 0.0 | 0.71 | 1.15 | 0.90 | 0.88 | 2.49 | 19668 | 2493 | 13 | 0 | 9 | 0 | 0 | logfile |
✔ | 6CV9 | 7637 | 2022-04-05 | 2018-03-27 | 3.8 | 4.02 | 3.77 | 3.9 | 0.006 | 1.00 | 0.0 | 0.05 | 9.51 | 0.01 | 2.316 | 6.18 | 0.00 | 8.7 | 91.3 | 0.0 | -3.93 | 0.77 | 0.75 | 1.07 | 3.9 | 0.018 | 1.42 | 2.0 | 0.04 | 15.92 | 0.01 | 2.018 | 19.70 | 0.27 | 9.1 | 90.9 | 0.0 | 0.08 | 2.75 | 0.80 | 0.80 | 1.22 | 10032 | 1264 | 4 | 0 | 0 | 0 | 0 | logfile |