Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PB0	20284	2022-07-03	2019-06-12	3.0	3.47	—	3.5	0.004	0.82	0.0	0.06	9.19	0.01	2.277	4.29	0.22	2.6	97.4	0.0	-2.85	0.58	0.75	2.87	3.5	0.003	0.58	0.0	0.04	14.61	0.01	2.135	8.18	3.13	2.8	97.2	0.0	0.59	2.15	0.57	0.79	1.97	8827	1068	7	0	12	0	0	logfile
✔	3J9R	6271	2022-07-07	2015-02-17	3.9	3.83	—	3.8	0.006	0.89	0.0	0.04	9.86	0.00	2.112	3.86	0.89	14.5	80.8	4.7	-5.43	0.59	0.82	2.58	3.8	0.006	0.79	0.0	0.04	15.84	0.01	2.006	15.58	0.69	9.6	89.5	1.0	-2.01	1.33	0.63	0.83	1.86	103824	13788	36	0	0	0	0	logfile
✔	6QXE	4666	2022-07-07	2019-03-07	4.15	4.14	—	4.0	0.008	0.92	0.0	0.05	14.95	0.01	1.734	14.58	0.13	7.5	92.3	0.2	-3.74	0.67	0.54	—	4.0	0.007	0.86	0.0	0.04	14.45	0.01	1.858	22.80	0.00	9.8	90.1	0.1	-1.83	1.74	0.77	0.73	—	40460	2626	10	24	0	0	19050	logfile
✔	5U9G	8522	2022-07-10	2016-12-16	3.2	4.54	—	3.3	0.006	0.92	0.0	0.08	13.52	0.01	2.111	12.41	0.93	10.6	88.5	1.0	-5.08	0.89	0.79	1.20	3.4	0.006	0.73	0.0	0.04	15.50	0.01	1.805	24.37	0.78	9.9	89.9	0.2	-1.89	1.89	0.95	0.91	1.08	152649	6561	70	4729	349	0	0	logfile
✔	6J0N	9765	2022-07-10	2018-12-25	3.5	3.55	—	3.5	0.007	1.09	0.0	0.06	16.27	0.01	2.196	6.21	2.74	6.5	93.3	0.1	-4.63	0.69	0.80	2.09	3.5	0.006	0.78	2.0	0.04	17.17	0.01	1.812	12.31	0.41	5.9	94.1	0.0	-1.54	0.72	0.68	0.82	1.74	149886	19044	54	0	0	0	0	logfile
✘	6RR7	4986	2022-07-07	2019-05-17	3.01	3.03	—	3.0	0.009	0.85	0.0	0.05	15.02	0.01	1.182	3.23	0.00	5.1	94.9	0.0	-3.62	0.77	0.81	3.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36290	2197	6	30	1	0	18001	logfile
✔	5U9F	8521	2022-07-10	2016-12-16	3.2	4.48	—	3.3	0.006	0.95	0.0	0.08	13.57	0.01	2.301	12.66	1.02	10.8	88.2	1.0	-5.04	0.87	0.78	1.55	3.4	0.006	0.74	1.0	0.04	15.79	0.01	1.801	26.21	0.96	10.9	89.0	0.1	-2.26	1.46	0.94	0.90	1.08	152819	6576	72	4729	361	0	0	logfile
✔	6T9o	10419	2022-07-04	2019-10-28	3.39	3.51	3.38	3.5	0.009	1.00	0.0	0.07	10.78	0.01	2.200	3.72	0.00	6.7	92.7	0.6	-3.77	0.66	0.86	3.99	3.5	0.003	0.52	0.0	0.04	15.26	0.00	2.105	7.23	0.18	2.5	97.3	0.2	0.80	0.55	0.69	0.88	2.82	16481	1924	8	0	41	0	0	logfile
✔	6T9N	10418	2022-07-04	2019-10-28	2.96	3.07	2.95	3.0	0.012	1.15	0.0	0.07	11.50	0.01	2.216	3.95	0.00	3.2	96.4	0.4	-3.35	0.71	0.88	4.95	3.1	0.002	0.56	0.0	0.04	15.28	0.00	2.182	9.32	0.71	1.8	98.0	0.2	1.38	1.26	0.67	0.88	4.32	16917	1920	8	0	53	0	0	logfile
✔	6Ni2	9375	2022-07-03	2018-12-26	4.0	4.38	—	4.1	0.010	1.33	0.0	0.07	9.61	0.01	2.245	6.79	0.00	6.7	93.1	0.1	-1.50	0.75	0.71	—	4.1	0.005	0.83	0.0	0.05	14.20	0.01	2.131	13.76	0.53	4.7	95.3	0.0	0.15	1.38	0.75	0.72	—	5381	704	5	0	0	0	0	logfile
✘	6NPJ	0471	2022-07-03	2019-01-17	3.8	3.73	—	3.7	0.008	1.24	0.0	0.07	17.12	0.01	2.246	7.23	6.25	8.8	91.2	0.0	-5.64	0.62	0.77	2.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6186	768	2	0	0	0	0	logfile
✔	6PVM	20493	2022-07-04	2019-07-21	4.5	4.24	—	4.3	0.006	1.18	0.0	0.06	12.60	0.01	2.154	6.75	0.87	15.6	84.1	0.3	-6.13	0.49	0.74	—	4.3	0.004	0.88	0.0	0.04	13.72	0.00	2.097	16.04	0.00	15.6	84.2	0.2	-2.64	1.01	0.49	0.76	—	21006	2576	6	0	2	0	0	logfile
✔	6QP6	4611	2022-07-03	2019-02-13	3.2	3.29	3.19	3.3	0.010	1.06	0.0	0.18	15.49	0.01	1.975	5.97	0.45	2.8	97.2	0.0	-2.74	0.64	0.80	2.31	3.3	0.005	0.66	0.0	0.04	16.56	0.01	2.049	9.75	0.45	3.3	96.7	0.0	0.38	0.49	0.63	0.82	2.36	12330	1482	4	0	8	0	0	logfile
✔	6QX8	4663	2022-07-07	2019-03-07	4.07	4.05	—	4.0	0.008	0.94	0.0	0.05	15.12	0.01	1.805	11.25	0.14	8.0	91.9	0.2	-3.75	0.74	0.73	—	4.0	0.003	0.66	0.0	0.04	14.63	0.00	1.851	15.63	0.00	7.9	92.0	0.0	-1.41	1.28	0.74	0.72	—	38594	2384	8	24	0	0	19050	logfile
✔	6NPH	0470	2022-07-03	2019-01-17	2.9	3.11	—	3.2	0.012	1.42	0.0	0.06	17.82	0.01	2.292	5.15	4.67	7.9	92.1	0.0	-4.29	0.53	0.71	1.66	3.2	0.003	0.61	0.0	0.04	16.78	0.00	2.216	7.44	1.87	5.5	94.5	0.0	0.48	1.11	0.61	0.84	2.48	7504	944	4	0	13	0	0	logfile
✔	6QM5	4588	2022-07-03	2019-02-01	3.6	3.74	3.61	3.7	0.007	0.83	0.0	0.05	15.76	0.01	2.311	4.11	0.00	4.1	95.9	0.0	-6.65	0.70	0.85	2.84	3.7	0.003	0.63	0.0	0.04	16.91	0.01	2.134	7.16	0.17	2.8	97.2	0.0	-0.40	0.52	0.69	0.84	1.92	10874	1346	4	0	4	0	0	logfile
✔	6DBX	7853	2022-07-04	2018-05-03	4.2	4.39	—	4.2	0.005	0.85	0.0	0.05	20.21	0.00	2.076	20.58	0.00	11.9	88.0	0.2	-4.68	0.81	0.80	—	4.2	0.003	0.72	0.0	0.04	18.04	0.00	1.815	16.14	0.00	5.5	94.4	0.1	-1.12	0.93	0.81	0.82	—	17436	1933	8	100	6	0	0	logfile
✔	6NPL	0473	2022-07-04	2019-01-17	2.9	2.52	—	3.0	0.009	1.18	0.0	0.05	16.97	0.01	2.264	4.15	7.67	8.5	91.5	0.1	-4.62	0.70	0.70	1.19	3.0	0.008	1.02	1.0	0.05	17.23	0.01	2.203	15.35	2.79	7.8	92.2	0.0	-0.80	1.02	0.77	0.86	2.46	13774	1722	4	0	13	0	0	logfile
✔	6i3N	4405	2022-07-03	2018-11-06	3.1	3.19	2.96	3.2	0.007	1.05	0.0	0.05	11.33	0.01	2.410	3.63	0.00	7.9	92.1	0.0	-5.28	0.58	0.82	1.77	3.2	0.006	0.70	0.0	0.04	17.04	0.00	2.156	7.95	0.71	5.6	94.4	0.0	1.75	1.33	0.61	0.86	0.96	10660	1339	13	0	0	0	0	logfile
✔	6UKT	20812	2022-07-03	2019-10-05	3.87	4.71	—	4.3	0.007	1.03	0.0	0.06	16.89	0.01	2.247	10.29	0.46	15.8	84.2	0.0	-5.03	0.89	0.80	0.36	4.3	0.003	0.74	0.0	0.04	17.71	0.01	2.158	14.14	0.46	10.6	89.4	0.1	-2.47	0.57	0.90	0.84	0.42	8979	1204	6	0	0	0	0	logfile

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