Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NN6	0458	2022-05-13	2019-01-14	3.9	3.97	—	3.8	0.010	1.02	0.0	0.05	25.83	0.01	2.144	9.12	0.81	3.8	96.0	0.2	-5.04	0.83	0.80	2.90	3.8	0.009	0.97	0.0	0.04	26.95	0.00	2.033	16.34	0.71	4.3	95.7	0.0	-0.38	1.36	0.83	0.79	1.43	15125	1149	12	290	0	0	0	logfile
✔	6HZ9	0315	2022-05-14	2018-10-22	4.8	4.94	4.76	4.8	0.009	1.01	0.0	0.05	14.59	0.01	1.957	3.28	0.51	2.9	97.1	0.0	-0.60	0.83	0.76	—	4.8	0.009	0.82	1.0	0.04	14.27	0.00	1.760	17.10	0.05	4.1	95.9	0.0	-0.05	1.89	0.84	0.78	—	67582	4120	26	6	12	0	33368	logfile
✔	5YWD	6853	2022-05-13	2017-11-29	4.2	4.38	4.11	4.2	0.003	0.73	0.0	0.04	14.12	0.00	2.031	12.08	6.20	4.1	95.9	0.0	-1.54	0.62	0.74	—	4.2	0.003	0.77	0.0	0.04	13.42	0.00	1.924	14.05	0.00	3.8	96.2	0.0	1.24	1.51	0.65	0.77	—	8997	1154	1	0	4	0	0	logfile
✔	5YU8	6844	2022-05-14	2017-11-21	3.8	3.92	—	3.9	0.014	1.86	0.0	0.09	12.63	0.02	1.834	0.30	0.25	2.5	97.3	0.2	-3.36	0.62	0.83	3.41	3.9	0.003	0.68	0.0	0.04	15.81	0.00	1.972	6.74	0.15	1.7	98.3	0.0	-0.77	1.32	0.61	0.85	2.27	18147	2292	13	0	10	0	0	logfile
✔	6DVZ	8921	2022-05-14	2018-06-25	4.24	4.48	—	4.4	0.008	1.27	0.0	0.06	12.54	0.01	2.265	5.74	0.18	16.6	82.6	0.8	-5.86	0.70	0.80	—	4.4	0.003	0.82	0.0	0.04	13.89	0.01	1.630	12.23	0.00	13.2	86.4	0.4	-2.20	0.89	0.70	0.80	—	20976	2572	8	0	12	0	0	logfile
✔	6HZ6	0312	2022-05-14	2018-10-22	4.3	4.35	4.18	4.3	0.010	1.00	0.0	0.05	14.61	0.01	1.941	3.54	0.59	2.8	97.2	0.0	-0.71	0.81	0.77	—	4.3	0.003	0.58	0.0	0.04	14.67	0.00	1.810	13.53	0.08	4.5	95.5	0.0	0.01	1.90	0.81	0.78	—	67582	4120	26	6	12	0	33368	logfile
✔	6HZ5	0311	2022-05-14	2018-10-22	4.2	4.28	4.18	4.2	0.009	0.97	0.0	0.05	14.60	0.01	1.960	2.98	0.70	2.7	97.3	0.0	-0.55	0.79	0.76	—	4.2	0.004	0.59	0.0	0.04	14.74	0.00	1.789	11.88	0.11	5.0	95.0	0.0	-0.14	1.88	0.81	0.78	—	67582	4120	26	6	12	0	33368	logfile
✔	6HZ8	0314	2022-05-14	2018-10-22	4.3	4.47	4.31	4.4	0.009	0.99	0.0	0.05	14.59	0.01	1.943	3.32	0.59	2.7	97.3	0.0	-0.48	0.77	0.73	—	4.4	0.003	0.60	0.0	0.04	14.39	0.00	1.759	12.32	0.00	4.3	95.7	0.0	-0.02	1.88	0.79	0.75	—	67582	4120	26	6	12	0	33368	logfile
✔	6PW5	20499	2022-05-15	2019-07-22	3.45	3.53	—	3.5	0.013	1.39	0.0	0.07	14.34	0.01	2.327	4.42	1.61	11.6	87.6	0.8	-6.95	0.76	0.85	3.30	3.5	0.003	0.70	0.0	0.04	15.91	0.00	2.142	8.52	0.31	8.2	91.5	0.3	-0.48	0.71	0.75	0.85	1.69	24740	3032	8	0	12	0	0	logfile
✔	6J2X	9772	2022-05-12	2019-01-03	3.8	3.99	—	3.9	0.002	0.40	0.0	0.04	7.12	0.00	2.220	6.73	0.00	5.8	94.1	0.1	-3.52	0.80	0.70	0.49	3.9	0.005	0.82	1.0	0.05	15.39	0.01	2.081	20.84	0.70	5.3	94.6	0.1	-0.82	1.89	0.84	0.78	0.91	106176	13501	47	0	0	0	0	logfile
✘	6RBE	4794	2022-05-15	2019-04-10	3.8	4.03	3.73	40.0	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.23	1.35	11.9	86.8	1.2	-4.17	0.25	0.02	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	6HZ7	0313	2022-05-14	2018-10-22	4.3	4.43	4.32	4.3	0.008	0.97	0.0	0.05	14.60	0.01	1.959	2.92	0.59	2.9	97.1	0.0	-0.47	0.81	0.76	—	4.3	0.005	0.66	0.0	0.04	14.38	0.00	1.764	15.60	0.05	5.5	94.5	0.0	-0.40	1.19	0.83	0.79	—	67582	4120	26	6	12	0	33368	logfile
✔	6PVL	20492	2022-05-14	2019-07-21	4.4	4.48	—	4.4	0.008	1.13	0.0	0.06	11.67	0.01	2.202	6.90	1.39	15.4	84.2	0.5	-5.53	0.69	0.81	—	4.4	0.003	0.82	0.0	0.04	13.42	0.00	2.144	13.93	0.00	12.6	87.3	0.2	-1.47	1.50	0.69	0.81	—	21006	2576	5	0	2	0	0	logfile
✔	5XYU	6790	2022-05-17	2017-07-10	3.45	3.46	—	3.4	0.006	1.04	0.0	0.10	18.30	0.00	1.633	6.96	1.66	6.1	91.6	2.3	-3.66	0.69	0.79	2.23	3.4	0.005	0.69	0.0	0.04	17.58	0.01	1.944	9.80	1.29	7.7	91.4	0.8	-0.87	1.49	0.78	0.86	1.45	45157	1966	22	1379	48	0	0	logfile
✔	6KS7	0759	2022-05-13	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.80	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.009	0.91	0.0	0.05	12.10	0.00	1.014	21.96	0.03	3.5	96.4	0.1	-0.25	1.82	0.74	0.68	—	62022	8131	16	0	0	0	0	logfile
✔	6BFU	7094	2022-05-15	2017-10-27	3.5	3.80	—	3.7	0.018	1.32	0.0	0.09	10.46	0.01	2.005	1.54	0.35	3.2	96.6	0.2	0.52	0.86	0.84	2.39	3.7	0.004	0.61	0.0	0.04	13.58	0.00	2.171	8.23	0.20	3.6	96.4	0.0	0.56	0.72	0.82	0.85	2.66	24480	2892	6	0	168	0	0	logfile
✔	6PZA	20530	2022-05-13	2019-07-31	3.74	3.92	—	3.9	0.008	1.06	0.0	0.06	10.72	0.01	2.252	3.33	0.00	8.0	92.0	0.0	-4.29	0.51	0.50	0.87	3.8	0.008	1.06	0.0	0.05	15.01	0.01	2.009	12.43	0.58	6.2	93.8	0.0	0.24	1.23	0.63	0.80	0.96	9659	1441	3	0	2	0	0	logfile
✘	5GW5	9541	2022-05-13	2016-09-08	4.6	4.75	—	4.7	0.002	0.58	0.0	0.04	7.37	0.00	2.136	6.96	0.01	4.5	95.4	0.1	-3.73	0.74	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	6QEM	4538	2022-05-13	2019-01-08	3.4	3.53	—	3.5	0.013	1.06	0.0	0.05	12.15	0.01	1.290	4.49	0.51	11.1	88.9	0.0	-4.45	0.74	0.71	2.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65750	4104	24	26	16	0	32652	logfile
✔	6C26	7336	2022-05-14	2018-01-06	3.5	3.64	—	3.6	0.011	1.39	0.0	0.07	15.85	0.01	1.833	6.83	2.07	9.8	90.2	0.0	-4.59	0.67	0.80	3.65	3.6	0.005	0.78	0.0	0.04	15.92	0.00	2.165	5.46	0.33	5.9	94.1	0.0	-0.66	1.29	0.73	0.84	2.47	17188	2077	14	0	19	0	0	logfile

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