Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6MZV	9308	2022-12-18	2018-11-05	3.4	3.57	—	3.5	0.006	0.73	0.0	0.05	8.48	0.01	2.343	7.32	0.34	3.4	96.6	0.0	-4.51	0.79	0.86	4.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32833	4523	42	0	0	0	0	logfile
✔	6S8H	10122	2022-12-11	2019-07-10	3.7	3.89	—	3.8	0.011	1.64	0.0	0.26	17.14	0.01	2.300	5.75	0.12	9.9	89.8	0.2	-6.48	0.67	0.83	0.98	3.8	0.004	0.98	0.0	0.09	18.00	0.00	2.087	11.06	0.62	8.4	91.5	0.1	-2.12	0.65	0.67	0.84	0.83	7818	959	6	0	7	0	0	logfile
✔	6KXS	0782	2022-12-14	2019-09-12	3.4	3.50	—	3.4	0.018	1.44	0.0	0.09	15.88	0.01	2.157	9.02	3.30	15.2	84.4	0.4	-4.73	0.70	0.72	2.54	3.4	0.003	0.69	0.0	0.05	16.61	0.00	2.148	11.56	0.51	8.8	91.2	0.0	-2.11	0.56	0.71	0.75	2.08	22499	2869	23	0	12	0	0	logfile
✔	6U2K	20621	2022-12-11	2019-08-20	2.93	3.31	3.29	3.3	0.010	0.98	0.0	0.06	10.03	0.01	2.354	3.34	0.19	9.7	90.3	0.0	-4.70	0.70	0.83	4.65	3.3	0.004	0.70	0.0	0.04	15.05	0.00	2.275	6.57	2.12	8.2	91.8	0.0	-2.00	1.20	0.65	0.81	2.97	4719	604	3	0	4	0	0	logfile
✔	6SB3	10134	2022-12-15	2019-07-18	3.5	3.63	3.51	3.7	0.002	0.56	0.0	0.04	12.95	0.00	2.104	13.36	0.00	4.9	95.1	0.0	-2.84	0.68	0.71	1.27	3.7	0.005	0.71	0.0	0.05	16.11	0.01	2.025	19.45	0.76	8.0	92.0	0.0	-1.75	1.63	0.71	0.77	0.99	75712	9664	32	0	32	0	0	logfile
✔	6EZM	4160	2022-12-20	2017-11-15	3.2	3.09	—	3.1	0.010	1.28	0.0	0.06	10.27	0.01	1.913	8.89	0.10	10.0	90.0	0.0	-4.97	0.79	0.82	4.74	3.1	0.004	0.69	0.0	0.05	15.82	0.01	2.051	10.65	0.23	8.3	91.7	0.0	-1.00	1.99	0.81	0.86	3.43	38400	5088	38	0	72	0	0	logfile
✘	6UUZ	20903	2022-12-18	2019-11-01	3.0	3.14	—	3.1	0.007	1.03	0.0	0.06	13.18	0.01	1.219	8.06	1.45	5.6	94.2	0.2	-4.07	0.62	0.65	3.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31818	4084	10	0	4	2	0	logfile
✔	6SKY	10231	2022-12-14	2019-08-16	2.8	2.95	—	3.0	0.009	0.69	0.0	0.05	13.80	0.00	2.077	5.12	3.63	4.2	95.8	0.0	-2.12	0.75	0.85	2.69	3.0	0.003	0.52	0.0	0.04	16.48	0.00	2.102	5.19	2.81	2.1	97.9	0.0	1.58	2.20	0.73	0.85	2.38	22348	2824	4	0	4	0	0	logfile
✘	4CE4	2490	2022-12-19	2013-11-08	4.9	5.03	—	5.0	0.004	0.79	0.0	0.04	14.48	0.00	1.398	13.86	2.64	5.3	94.5	0.2	-2.30	0.47	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65473	3572	40	1437	984	0	0	logfile
✔	6iZR	9757	2022-12-16	2018-12-20	4.7	4.86	—	4.7	0.004	0.90	0.0	0.05	11.50	0.01	2.086	6.64	0.26	6.9	93.1	0.0	-4.07	0.68	0.78	—	4.7	0.004	0.86	0.0	0.05	12.98	0.00	2.077	22.21	0.00	6.6	93.4	0.0	-0.51	2.07	0.66	0.71	—	84360	10470	60	0	60	0	0	logfile
✔	6MWQ	9277	2022-12-14	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.003	0.70	0.0	0.04	13.25	0.00	2.183	8.34	1.48	3.6	96.1	0.2	-1.09	1.31	0.77	0.86	1.70	22072	2873	8	0	0	0	0	logfile
✘	6JSi	9882	2022-12-19	2019-04-08	4.7	4.70	—	4.6	0.007	1.48	0.0	0.06	15.33	0.01	2.231	10.68	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62820	5844	9	0	4044	0	0	logfile
✔	6XWQ	10635	2022-12-12	2020-01-24	3.41	4.27	—	4.0	0.003	0.61	0.0	0.04	13.42	0.00	2.171	10.53	0.00	3.5	96.2	0.2	-2.80	0.73	0.80	0.22	4.0	0.003	0.78	0.0	0.04	15.52	0.00	2.168	13.94	0.20	4.0	96.0	0.0	1.04	1.17	0.72	0.84	0.66	9572	1281	6	0	0	0	0	logfile
✔	6N1V	9319	2022-12-19	2018-11-12	4.0	4.63	—	4.2	0.008	0.96	0.0	0.06	15.13	0.01	2.226	8.06	10.74	6.7	93.1	0.2	-2.97	0.79	0.72	—	4.2	0.003	0.69	0.0	0.05	14.86	0.00	2.129	13.02	0.29	6.9	93.0	0.1	-1.16	1.70	0.86	0.86	—	36498	4470	69	0	144	0	0	logfile
✔	6QXM	4669	2022-12-19	2019-03-07	4.1	2.35	—	3.5	0.008	1.25	0.0	0.06	18.91	0.01	2.333	6.84	8.63	9.3	90.7	0.0	-4.78	0.68	0.67	—	2.5	0.003	0.69	0.0	0.04	15.70	0.00	2.096	11.00	0.10	5.4	94.6	0.0	-1.31	1.63	0.66	0.65	—	37164	4704	12	0	0	0	0	logfile
✔	6UES	20755	2022-12-11	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✘	6KMW	0726	2022-12-19	2019-08-01	2.35	2.41	—	2.4	0.026	2.51	0.0	0.08	20.93	0.03	1.212	6.39	3.70	4.3	95.6	0.1	-4.06	0.77	0.85	4.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64083	5739	63	0	366	627	0	logfile
✔	6GEJ	4395	2022-12-21	2018-04-26	3.6	3.77	—	3.7	0.003	0.62	0.0	0.04	18.57	0.00	1.491	9.17	3.93	4.6	95.4	0.0	-2.70	0.82	0.77	0.98	3.7	0.004	0.68	0.0	0.04	20.51	0.00	0.867	10.76	0.38	4.4	95.6	0.0	-0.05	0.83	0.83	0.80	0.97	43702	4683	29	308	151	0	0	logfile
✔	6ME0	9105	2022-12-14	2018-09-05	3.6	3.74	—	3.6	0.010	1.16	0.0	0.05	17.63	0.01	1.531	13.75	0.00	11.8	88.2	0.0	-5.11	0.89	0.81	2.89	3.6	0.005	0.67	0.0	0.03	17.39	0.00	1.842	19.43	0.28	13.2	86.8	0.0	-2.26	1.22	0.89	0.82	2.07	21539	414	4	845	33	0	0	logfile
✔	6C9i	7436	2022-12-15	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	1.04	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.004	0.47	0.0	0.04	15.04	0.00	2.229	5.61	0.12	0.0	100.0	0.0	3.66	2.42	0.72	0.90	3.62	23700	3087	24	0	0	0	0	logfile

• ← previous
• Page 5 of 443
• next →