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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6MZV | 9308 | 2022-12-18 | 2018-11-05 | 3.4 | 3.57 | — | 3.5 | 0.006 | 0.73 | 0.0 | 0.05 | 8.48 | 0.01 | 2.343 | 7.32 | 0.34 | 3.4 | 96.6 | 0.0 | -4.51 | 0.79 | 0.86 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32833 | 4523 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S8H | 10122 | 2022-12-11 | 2019-07-10 | 3.7 | 3.89 | — | 3.8 | 0.011 | 1.64 | 0.0 | 0.26 | 17.14 | 0.01 | 2.300 | 5.75 | 0.12 | 9.9 | 89.8 | 0.2 | -6.48 | 0.67 | 0.83 | 0.98 | 3.8 | 0.004 | 0.98 | 0.0 | 0.09 | 18.00 | 0.00 | 2.087 | 11.06 | 0.62 | 8.4 | 91.5 | 0.1 | -2.12 | 0.65 | 0.67 | 0.84 | 0.83 | 7818 | 959 | 6 | 0 | 7 | 0 | 0 | logfile |
✔ | 6KXS | 0782 | 2022-12-14 | 2019-09-12 | 3.4 | 3.50 | — | 3.4 | 0.018 | 1.44 | 0.0 | 0.09 | 15.88 | 0.01 | 2.157 | 9.02 | 3.30 | 15.2 | 84.4 | 0.4 | -4.73 | 0.70 | 0.72 | 2.54 | 3.4 | 0.003 | 0.69 | 0.0 | 0.05 | 16.61 | 0.00 | 2.148 | 11.56 | 0.51 | 8.8 | 91.2 | 0.0 | -2.11 | 0.56 | 0.71 | 0.75 | 2.08 | 22499 | 2869 | 23 | 0 | 12 | 0 | 0 | logfile |
✔ | 6U2K | 20621 | 2022-12-11 | 2019-08-20 | 2.93 | 3.31 | 3.29 | 3.3 | 0.010 | 0.98 | 0.0 | 0.06 | 10.03 | 0.01 | 2.354 | 3.34 | 0.19 | 9.7 | 90.3 | 0.0 | -4.70 | 0.70 | 0.83 | 4.65 | 3.3 | 0.004 | 0.70 | 0.0 | 0.04 | 15.05 | 0.00 | 2.275 | 6.57 | 2.12 | 8.2 | 91.8 | 0.0 | -2.00 | 1.20 | 0.65 | 0.81 | 2.97 | 4719 | 604 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 6SB3 | 10134 | 2022-12-15 | 2019-07-18 | 3.5 | 3.63 | 3.51 | 3.7 | 0.002 | 0.56 | 0.0 | 0.04 | 12.95 | 0.00 | 2.104 | 13.36 | 0.00 | 4.9 | 95.1 | 0.0 | -2.84 | 0.68 | 0.71 | 1.27 | 3.7 | 0.005 | 0.71 | 0.0 | 0.05 | 16.11 | 0.01 | 2.025 | 19.45 | 0.76 | 8.0 | 92.0 | 0.0 | -1.75 | 1.63 | 0.71 | 0.77 | 0.99 | 75712 | 9664 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 6EZM | 4160 | 2022-12-20 | 2017-11-15 | 3.2 | 3.09 | — | 3.1 | 0.010 | 1.28 | 0.0 | 0.06 | 10.27 | 0.01 | 1.913 | 8.89 | 0.10 | 10.0 | 90.0 | 0.0 | -4.97 | 0.79 | 0.82 | 4.74 | 3.1 | 0.004 | 0.69 | 0.0 | 0.05 | 15.82 | 0.01 | 2.051 | 10.65 | 0.23 | 8.3 | 91.7 | 0.0 | -1.00 | 1.99 | 0.81 | 0.86 | 3.43 | 38400 | 5088 | 38 | 0 | 72 | 0 | 0 | logfile |
✘ | 6UUZ | 20903 | 2022-12-18 | 2019-11-01 | 3.0 | 3.14 | — | 3.1 | 0.007 | 1.03 | 0.0 | 0.06 | 13.18 | 0.01 | 1.219 | 8.06 | 1.45 | 5.6 | 94.2 | 0.2 | -4.07 | 0.62 | 0.65 | 3.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31818 | 4084 | 10 | 0 | 4 | 2 | 0 | logfile |
✔ | 6SKY | 10231 | 2022-12-14 | 2019-08-16 | 2.8 | 2.95 | — | 3.0 | 0.009 | 0.69 | 0.0 | 0.05 | 13.80 | 0.00 | 2.077 | 5.12 | 3.63 | 4.2 | 95.8 | 0.0 | -2.12 | 0.75 | 0.85 | 2.69 | 3.0 | 0.003 | 0.52 | 0.0 | 0.04 | 16.48 | 0.00 | 2.102 | 5.19 | 2.81 | 2.1 | 97.9 | 0.0 | 1.58 | 2.20 | 0.73 | 0.85 | 2.38 | 22348 | 2824 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 4CE4 | 2490 | 2022-12-19 | 2013-11-08 | 4.9 | 5.03 | — | 5.0 | 0.004 | 0.79 | 0.0 | 0.04 | 14.48 | 0.00 | 1.398 | 13.86 | 2.64 | 5.3 | 94.5 | 0.2 | -2.30 | 0.47 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65473 | 3572 | 40 | 1437 | 984 | 0 | 0 | logfile |
✔ | 6iZR | 9757 | 2022-12-16 | 2018-12-20 | 4.7 | 4.86 | — | 4.7 | 0.004 | 0.90 | 0.0 | 0.05 | 11.50 | 0.01 | 2.086 | 6.64 | 0.26 | 6.9 | 93.1 | 0.0 | -4.07 | 0.68 | 0.78 | — | 4.7 | 0.004 | 0.86 | 0.0 | 0.05 | 12.98 | 0.00 | 2.077 | 22.21 | 0.00 | 6.6 | 93.4 | 0.0 | -0.51 | 2.07 | 0.66 | 0.71 | — | 84360 | 10470 | 60 | 0 | 60 | 0 | 0 | logfile |
✔ | 6MWQ | 9277 | 2022-12-14 | 2018-10-30 | 3.0 | 3.33 | 2.89 | 3.1 | 0.001 | 0.36 | 0.0 | 0.04 | 4.66 | 0.00 | 2.321 | 4.19 | 0.13 | 11.0 | 87.5 | 1.5 | -4.81 | 0.54 | 0.39 | 0.22 | 3.1 | 0.003 | 0.70 | 0.0 | 0.04 | 13.25 | 0.00 | 2.183 | 8.34 | 1.48 | 3.6 | 96.1 | 0.2 | -1.09 | 1.31 | 0.77 | 0.86 | 1.70 | 22072 | 2873 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JSi | 9882 | 2022-12-19 | 2019-04-08 | 4.7 | 4.70 | — | 4.6 | 0.007 | 1.48 | 0.0 | 0.06 | 15.33 | 0.01 | 2.231 | 10.68 | 2.42 | 23.2 | 72.3 | 4.5 | -6.05 | 0.64 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62820 | 5844 | 9 | 0 | 4044 | 0 | 0 | logfile |
✔ | 6XWQ | 10635 | 2022-12-12 | 2020-01-24 | 3.41 | 4.27 | — | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 13.42 | 0.00 | 2.171 | 10.53 | 0.00 | 3.5 | 96.2 | 0.2 | -2.80 | 0.73 | 0.80 | 0.22 | 4.0 | 0.003 | 0.78 | 0.0 | 0.04 | 15.52 | 0.00 | 2.168 | 13.94 | 0.20 | 4.0 | 96.0 | 0.0 | 1.04 | 1.17 | 0.72 | 0.84 | 0.66 | 9572 | 1281 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N1V | 9319 | 2022-12-19 | 2018-11-12 | 4.0 | 4.63 | — | 4.2 | 0.008 | 0.96 | 0.0 | 0.06 | 15.13 | 0.01 | 2.226 | 8.06 | 10.74 | 6.7 | 93.1 | 0.2 | -2.97 | 0.79 | 0.72 | — | 4.2 | 0.003 | 0.69 | 0.0 | 0.05 | 14.86 | 0.00 | 2.129 | 13.02 | 0.29 | 6.9 | 93.0 | 0.1 | -1.16 | 1.70 | 0.86 | 0.86 | — | 36498 | 4470 | 69 | 0 | 144 | 0 | 0 | logfile |
✔ | 6QXM | 4669 | 2022-12-19 | 2019-03-07 | 4.1 | 2.35 | — | 3.5 | 0.008 | 1.25 | 0.0 | 0.06 | 18.91 | 0.01 | 2.333 | 6.84 | 8.63 | 9.3 | 90.7 | 0.0 | -4.78 | 0.68 | 0.67 | — | 2.5 | 0.003 | 0.69 | 0.0 | 0.04 | 15.70 | 0.00 | 2.096 | 11.00 | 0.10 | 5.4 | 94.6 | 0.0 | -1.31 | 1.63 | 0.66 | 0.65 | — | 37164 | 4704 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UES | 20755 | 2022-12-11 | 2019-09-23 | 3.7 | 3.94 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 17.15 | 0.00 | 2.100 | 7.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.76 | — | 3.3 | 0.007 | 0.87 | 0.0 | 0.04 | 21.10 | 0.01 | 1.792 | 36.17 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.34 | 0.88 | 0.83 | — | 3842 | 0 | 1 | 119 | 0 | 0 | 1291 | logfile |
✘ | 6KMW | 0726 | 2022-12-19 | 2019-08-01 | 2.35 | 2.41 | — | 2.4 | 0.026 | 2.51 | 0.0 | 0.08 | 20.93 | 0.03 | 1.212 | 6.39 | 3.70 | 4.3 | 95.6 | 0.1 | -4.06 | 0.77 | 0.85 | 4.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64083 | 5739 | 63 | 0 | 366 | 627 | 0 | logfile |
✔ | 6GEJ | 4395 | 2022-12-21 | 2018-04-26 | 3.6 | 3.77 | — | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 18.57 | 0.00 | 1.491 | 9.17 | 3.93 | 4.6 | 95.4 | 0.0 | -2.70 | 0.82 | 0.77 | 0.98 | 3.7 | 0.004 | 0.68 | 0.0 | 0.04 | 20.51 | 0.00 | 0.867 | 10.76 | 0.38 | 4.4 | 95.6 | 0.0 | -0.05 | 0.83 | 0.83 | 0.80 | 0.97 | 43702 | 4683 | 29 | 308 | 151 | 0 | 0 | logfile |
✔ | 6ME0 | 9105 | 2022-12-14 | 2018-09-05 | 3.6 | 3.74 | — | 3.6 | 0.010 | 1.16 | 0.0 | 0.05 | 17.63 | 0.01 | 1.531 | 13.75 | 0.00 | 11.8 | 88.2 | 0.0 | -5.11 | 0.89 | 0.81 | 2.89 | 3.6 | 0.005 | 0.67 | 0.0 | 0.03 | 17.39 | 0.00 | 1.842 | 19.43 | 0.28 | 13.2 | 86.8 | 0.0 | -2.26 | 1.22 | 0.89 | 0.82 | 2.07 | 21539 | 414 | 4 | 845 | 33 | 0 | 0 | logfile |
✔ | 6C9i | 7436 | 2022-12-15 | 2018-01-26 | 3.09 | 3.21 | — | 3.2 | 0.029 | 1.48 | 0.0 | 0.12 | 9.22 | 0.01 | 2.417 | 1.04 | 0.00 | 0.3 | 99.6 | 0.1 | 2.36 | 0.79 | 0.85 | 4.97 | 3.2 | 0.004 | 0.47 | 0.0 | 0.04 | 15.04 | 0.00 | 2.229 | 5.61 | 0.12 | 0.0 | 100.0 | 0.0 | 3.66 | 2.42 | 0.72 | 0.90 | 3.62 | 23700 | 3087 | 24 | 0 | 0 | 0 | 0 | logfile |