Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SFK	25091	2023-04-20	2021-10-04	2.74	2.96	—	3.1	0.008	0.97	0.0	0.04	18.02	0.01	2.265	3.61	0.43	1.8	98.2	0.0	2.37	0.74	0.84	3.90	3.0	0.003	0.49	0.0	0.04	17.19	0.01	2.160	5.04	0.43	2.4	97.6	0.0	1.08	0.34	0.67	0.83	4.06	7419	852	9	0	24	57	0	logfile
✘	8EY2	28666	2023-04-20	2022-10-26	3.5	3.71	3.55	3.8	0.003	0.60	0.0	0.04	13.04	0.00	2.149	14.08	0.00	5.8	94.2	0.0	-0.29	0.78	0.80	2.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4908	634	4	0	0	0	0	logfile
✔	8G8G	29850	2023-04-23	2023-02-17	3.2	4.22	3.27	3.4	0.005	0.59	0.0	0.03	27.75	0.00	1.622	6.71	0.64	1.8	98.2	0.0	-0.50	0.70	0.50	0.77	3.0	0.004	0.65	0.0	0.03	28.86	0.00	2.193	11.69	0.13	2.9	97.1	0.0	1.87	1.57	0.91	0.87	1.73	14558	931	11	348	0	0	0	logfile
✔	8E55	27903	2023-04-22	2022-08-19	3.85	4.07	3.34	4.0	0.007	0.67	0.0	0.03	12.36	0.00	2.252	3.39	0.50	2.5	97.5	0.0	1.17	0.66	0.60	-0.11	4.0	0.003	0.55	0.0	0.03	16.13	0.00	2.262	10.49	0.00	1.8	98.2	0.0	4.40	1.43	0.69	0.70	-0.11	12176	780	4	0	0	0	6104	logfile
✔	6B19	7031	2023-04-20	2017-09-18	4.5	4.61	—	4.4	0.023	1.38	0.0	0.05	6.45	0.01	2.201	16.18	0.00	19.4	80.5	0.1	-5.73	0.74	0.63	—	4.4	0.003	0.84	0.0	0.04	12.73	0.00	1.937	28.68	0.00	25.4	74.6	0.0	-4.85	1.32	0.78	0.68	—	5699	907	4	38	0	0	409	logfile
✔	6YSZ	10911	2023-04-23	2020-04-23	3.6	2.67	—	3.8	0.004	0.56	0.0	0.04	15.54	0.00	2.295	11.00	0.38	2.9	97.1	0.0	-1.45	0.80	0.81	1.22	3.9	0.003	0.58	0.0	0.04	17.83	0.00	2.145	9.80	0.81	1.2	98.8	0.0	1.97	1.02	0.80	0.79	1.01	15192	1896	6	0	0	0	0	logfile
✔	8B1R	15803	2023-04-26	2022-09-12	3.2	3.47	3.13	3.3	0.004	0.63	0.0	0.05	9.18	0.00	2.210	7.58	0.34	0.7	99.3	0.0	0.06	0.84	0.87	2.66	3.3	0.004	0.55	0.0	0.04	13.23	0.00	2.221	5.19	0.17	1.6	98.4	0.0	2.27	0.64	0.86	0.90	2.75	21953	2746	6	0	1	0	0	logfile
✔	7N64	24193	2023-04-20	2021-06-07	4.2	3.94	—	3.9	0.009	1.06	0.0	0.06	15.21	0.01	2.157	36.86	1.78	20.8	78.9	0.3	-3.80	0.65	0.71	—	3.9	0.005	0.83	0.0	0.05	13.92	0.01	2.089	23.18	0.13	14.5	85.5	0.0	-2.77	0.52	0.64	0.69	—	7189	906	7	0	7	0	0	logfile
✔	6oF2	20040	2023-04-22	2019-03-28	2.9	2.77	—	3.7	0.006	1.00	0.0	0.05	14.63	0.01	2.062	8.80	1.02	17.7	80.2	2.2	-4.30	0.69	0.63	0.25	3.4	0.004	0.81	0.0	0.04	17.12	0.01	1.964	10.21	2.71	8.0	92.0	0.0	0.24	1.60	0.79	0.83	1.80	11062	1422	6	0	4	0	0	logfile
✔	8EFL	28085	2023-04-22	2022-09-08	3.2	3.35	3.03	3.4	0.006	0.89	0.0	0.07	8.27	0.01	2.259	3.59	0.00	1.1	98.9	0.0	0.35	0.62	0.77	2.84	3.3	0.003	0.55	0.0	0.04	13.54	0.00	2.131	7.02	0.55	1.7	98.3	0.0	1.92	0.65	0.63	0.83	2.38	11750	1446	9	0	12	0	0	logfile
✔	7L2J	23130	2023-04-24	2020-12-17	3.66	3.92	3.68	3.9	0.007	0.70	0.0	0.28	11.48	0.00	2.074	2.22	0.16	4.9	95.1	0.0	0.68	0.58	0.79	2.07	3.9	0.003	0.71	0.0	0.04	15.94	0.00	2.034	10.05	0.21	5.8	94.2	0.0	0.32	1.84	0.57	0.80	1.21	17336	2116	8	0	4	0	0	logfile
✔	7BZW	30261	2023-04-21	2020-04-28	4.6	7.66	4.73	6.0	0.003	0.82	0.0	0.05	15.82	0.01	2.176	28.88	0.00	19.4	80.6	0.0	-5.59	0.85	0.67	—	6.5	0.003	0.82	0.0	0.05	14.68	0.01	1.922	20.13	0.00	19.3	80.7	0.0	-2.79	1.80	0.93	0.86	—	9756	1212	12	0	0	0	0	logfile
✔	7A4A	11630	2023-04-25	2020-08-19	3.76	3.95	3.75	4.0	0.007	0.71	0.0	0.04	11.65	0.01	2.109	13.28	2.96	12.8	87.2	0.0	-6.00	0.69	0.78	2.12	4.0	0.003	0.74	0.0	0.05	14.47	0.00	2.177	13.38	0.51	10.3	89.7	0.0	-3.32	0.87	0.67	0.77	2.19	19785	1317	6	0	3	0	9618	logfile
✔	8DD4	27334	2023-04-21	2022-06-17	3.1	3.27	3.15	3.2	0.003	0.65	0.0	0.04	14.94	0.00	2.219	8.36	0.00	2.8	97.0	0.2	0.21	0.74	0.75	2.15	3.2	0.003	0.63	0.0	0.04	16.72	0.00	2.241	12.68	0.52	3.1	96.7	0.2	0.49	1.61	0.75	0.79	2.11	10426	1255	4	0	0	21	0	logfile
✔	6V1S	21016	2023-04-24	2019-11-21	3.8	3.91	—	3.9	0.007	0.75	0.0	0.05	14.40	0.01	2.181	10.19	0.25	12.6	87.4	0.0	-5.42	0.74	0.86	2.93	3.8	0.003	0.62	0.0	0.04	15.96	0.00	2.208	8.10	0.30	6.5	93.5	0.0	-2.74	1.19	0.74	0.85	2.31	17964	2293	15	0	14	0	0	logfile
✔	6K1P	9719	2023-04-23	2019-05-10	3.87	4.09	—	4.0	0.010	1.03	0.0	0.06	24.72	0.01	1.838	5.33	0.10	8.5	90.9	0.6	-4.45	0.75	0.82	2.45	4.0	0.003	0.62	0.0	0.04	25.48	0.00	1.912	8.85	0.48	5.4	94.6	0.0	0.10	2.48	0.75	0.82	0.99	15841	1230	11	292	3	0	0	logfile
✔	7ANZ	11835	2023-04-24	2020-10-13	3.6	2.50	—	3.7	0.003	0.78	0.0	0.05	15.89	0.00	2.277	4.54	0.31	6.5	93.4	0.2	-5.88	0.77	0.74	1.50	3.7	0.003	0.70	0.0	0.04	17.57	0.00	2.104	10.67	0.52	6.5	93.5	0.0	-0.61	0.66	0.78	0.76	1.10	16751	2041	4	0	0	0	0	logfile
✔	7CKX	30393	2023-04-23	2020-07-20	3.54	3.65	—	3.6	0.003	0.50	0.0	0.04	13.48	0.00	2.160	12.77	2.09	3.2	96.8	0.0	-3.07	0.59	0.71	1.45	3.6	0.004	0.78	0.0	0.05	16.61	0.00	2.140	22.36	1.39	4.8	95.2	0.0	-1.32	0.76	0.61	0.76	1.72	8112	1035	5	0	2	0	0	logfile
✘	7N62	24192	2023-04-20	2021-06-07	4.0	3.42	—	3.9	0.006	0.82	0.0	0.05	13.98	0.01	2.203	21.20	0.00	14.9	85.1	0.0	-2.74	0.73	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5613	712	4	0	5	0	0	logfile
✔	7L2o	23135	2023-04-23	2020-12-17	3.64	3.93	3.68	3.9	0.010	0.89	0.0	0.05	12.84	0.00	1.989	3.56	1.87	5.0	95.0	0.0	-0.84	0.54	0.78	2.34	3.9	0.004	0.71	0.0	0.04	16.29	0.00	2.140	11.29	0.35	6.9	93.1	0.0	0.43	0.91	0.54	0.77	1.38	15800	1920	8	0	4	0	0	logfile

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