Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6N07	9312	2022-07-06	2018-11-06	3.6	3.73	—	3.7	0.007	0.77	0.0	0.05	9.00	0.01	2.330	5.07	0.06	2.3	97.7	0.0	-3.72	0.78	0.86	3.84	3.7	0.005	0.70	0.0	0.05	14.93	0.00	2.118	13.51	0.53	2.1	97.9	0.0	0.04	2.18	0.79	0.86	2.80	32833	4523	42	0	0	0	0	logfile
✔	6CDi	7460	2022-07-06	2018-02-08	3.6	3.90	—	3.6	0.007	0.90	0.0	0.10	9.66	0.01	1.461	7.90	0.45	5.9	94.0	0.1	-3.25	0.84	0.84	2.59	3.6	0.004	0.71	0.0	0.04	13.67	0.01	2.148	11.39	0.42	6.4	93.6	0.0	-0.99	1.75	0.85	0.86	2.54	32763	3843	30	0	210	0	0	logfile
✔	6J2Q	9771	2022-07-02	2019-01-02	3.8	3.95	—	3.9	0.002	0.40	0.0	0.04	7.17	0.00	2.202	6.66	0.00	5.5	94.4	0.1	-3.50	0.77	0.68	0.88	3.9	0.004	0.79	0.0	0.04	15.52	0.01	2.019	16.08	0.55	4.3	95.6	0.1	-0.65	2.27	0.82	0.76	1.06	106311	13518	47	0	0	0	0	logfile
✘	6Ui9	20783	2022-07-06	2019-09-30	3.1	3.28	—	3.3	0.012	1.23	0.0	0.07	15.82	0.01	1.023	6.72	0.27	6.7	93.1	0.2	-3.91	0.67	0.67	2.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31951	4084	8	0	12	0	0	logfile
✘	6EF0	9042	2022-07-05	2018-08-15	4.43	3.84	—	4.1	0.011	1.07	0.0	0.06	12.59	0.01	2.089	8.62	0.00	16.8	83.2	0.0	-5.24	0.62	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24748	3318	20	0	6	0	0	logfile
✔	6i26	0328	2022-07-05	2018-10-31	4.3	4.37	—	4.2	0.005	0.89	0.0	0.05	8.22	0.01	0.411	6.12	0.50	6.4	93.3	0.3	-6.25	0.75	0.60	—	4.2	0.003	0.68	0.0	0.04	10.67	0.00	2.211	6.17	0.00	6.6	93.4	0.0	0.06	0.98	0.82	0.75	—	22765	3366	1	0	221	0	0	logfile
✔	6MHQ	9116	2022-07-06	2018-09-18	3.4	3.50	—	3.5	0.018	0.80	0.0	0.08	12.18	0.00	2.210	6.75	3.14	5.8	94.2	0.0	-1.67	0.73	0.83	2.60	3.5	0.002	0.49	0.0	0.04	15.39	0.00	2.088	11.34	0.84	5.0	95.0	0.0	2.21	1.06	0.73	0.85	2.42	32640	2124	12	0	0	0	15264	logfile
✔	6EF2	9044	2022-07-05	2018-08-15	4.27	3.17	—	4.0	0.011	1.02	0.0	0.06	11.43	0.01	2.139	6.21	0.00	13.4	86.5	0.0	-5.32	0.62	0.80	—	3.9	0.005	0.82	0.0	0.05	12.92	0.00	2.087	12.25	0.00	7.8	92.1	0.1	-2.11	1.62	0.63	0.82	—	24659	3290	20	0	6	0	0	logfile
✘	6UUW	20902	2022-07-06	2019-11-01	2.85	2.97	—	2.9	0.011	0.83	0.0	0.06	13.92	0.01	1.179	20.01	0.99	5.0	94.8	0.2	-4.59	0.74	0.85	4.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32438	4136	12	0	8	29	0	logfile
✔	5MMM	3533	2022-07-10	2016-12-11	3.4	3.54	—	3.4	0.008	1.13	0.0	0.05	16.64	0.01	1.757	9.06	9.93	4.9	94.8	0.3	-3.33	0.90	0.86	1.38	3.4	0.006	0.69	2.0	0.04	16.29	0.01	1.109	15.15	0.32	4.6	95.3	0.1	-0.58	0.73	0.89	0.84	1.25	152465	6586	86	4585	955	0	0	logfile
✘	6NSJ	0498	2022-07-03	2019-01-24	2.7	3.69	2.67	3.6	0.007	1.06	0.0	0.06	10.76	0.01	1.182	8.25	2.18	6.0	94.0	0.0	-4.40	0.61	0.75	5.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9096	1092	12	0	18	0	0	logfile
✔	6SEF	10154	2022-07-03	2019-07-29	3.7	4.25	—	3.6	0.007	0.85	0.0	0.05	27.92	0.00	2.225	4.94	0.00	2.7	97.3	0.0	-2.10	0.88	0.84	2.28	3.5	0.006	0.76	0.0	0.04	29.08	0.00	2.045	19.77	1.13	2.9	97.1	0.0	0.51	0.71	0.89	0.85	1.80	11919	751	11	290	0	0	0	logfile
✔	6SEE	10153	2022-07-03	2019-07-29	4.2	4.47	—	4.1	0.008	0.94	0.0	0.05	27.63	0.01	2.252	4.46	0.00	3.0	97.0	0.0	-1.74	0.87	0.83	—	4.1	0.004	0.69	0.0	0.04	28.07	0.00	2.034	17.94	0.00	3.1	96.9	0.0	0.57	0.73	0.87	0.83	—	11949	756	11	290	0	0	0	logfile
✔	6QJM	4564	2022-07-02	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.003	0.58	0.0	0.06	13.83	0.00	2.178	4.49	0.00	5.1	94.9	0.0	-2.27	1.60	0.34	0.74	3.53	846	111	3	0	0	0	0	logfile
✔	6i2N	0333	2022-07-04	2018-11-01	3.3	3.45	3.33	3.4	0.007	0.97	0.0	0.05	11.09	0.01	2.323	2.82	0.00	6.0	94.0	0.0	-3.81	0.75	0.79	2.55	3.4	0.003	0.59	0.0	0.04	14.68	0.00	2.146	8.49	0.34	4.7	95.3	0.0	0.66	2.26	0.77	0.84	1.82	18970	2352	14	21	0	0	0	logfile
✔	6UUZ	20903	2022-07-06	2019-11-01	3.0	3.14	—	3.1	0.029	1.52	0.0	0.06	13.56	0.01	1.608	9.32	1.45	5.6	94.2	0.2	-4.07	0.62	0.65	3.25	3.1	0.005	0.70	0.0	0.05	15.44	0.00	2.184	13.14	1.60	5.3	94.7	0.0	-0.96	1.00	0.70	0.75	2.91	31818	4084	10	0	4	2	0	logfile
✔	6MPH	9189	2022-07-06	2018-10-06	3.8	4.28	—	3.9	0.006	0.79	0.0	0.05	12.56	0.01	2.286	6.16	6.01	5.3	94.6	0.2	-3.46	0.84	0.85	2.34	3.9	0.003	0.73	0.0	0.04	14.25	0.00	2.037	15.20	0.18	5.5	94.5	0.0	-1.26	0.76	0.84	0.86	2.04	32092	3843	33	0	155	0	0	logfile
✔	6MWQ	9277	2022-07-05	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.004	0.75	0.0	0.04	13.37	0.00	2.114	9.70	2.04	4.9	94.9	0.2	-1.32	1.34	0.78	0.86	1.93	22072	2873	8	0	0	0	0	logfile
✔	6QJP	4565	2022-07-02	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.003	0.70	0.0	0.05	12.40	0.00	2.347	10.42	0.00	1.1	98.9	0.0	-3.47	1.59	0.32	0.72	4.10	816	105	3	0	0	0	0	logfile
✔	5H1Q	9570	2022-07-05	2016-10-11	3.3	3.90	—	4.0	0.008	1.04	0.0	0.06	11.65	0.00	1.998	16.22	0.31	12.6	86.8	0.6	-5.07	0.44	0.69	3.01	3.9	0.004	0.80	0.0	0.04	16.47	0.00	2.137	9.01	0.93	9.3	90.1	0.6	-0.11	0.82	0.56	0.80	1.75	23784	2888	8	0	0	0	0	logfile

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