Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A1D	11606	2023-08-22	2020-08-12	4.19	4.02	4.19	4.1	0.006	1.04	0.0	0.06	10.62	0.01	2.253	7.83	0.35	8.4	91.6	0.0	-4.40	0.83	0.73	—	3.8	0.019	1.12	0.0	0.05	12.69	0.01	2.050	23.57	0.00	10.0	90.0	0.0	-1.97	1.05	0.86	0.79	—	33032	4252	4	0	0	0	0	logfile
✔	7RGL	24451	2023-08-27	2021-07-15	2.4	2.51	—	2.4	0.013	1.20	0.0	0.06	15.88	0.01	2.317	3.77	3.66	3.7	96.2	0.2	-1.40	0.65	0.88	5.76	2.4	0.003	0.55	0.0	0.04	16.03	0.00	1.994	3.28	1.28	3.5	96.5	0.0	0.39	0.96	0.66	0.89	5.56	50936	3328	16	0	16	0	25408	logfile
✔	6DV6	8915	2023-08-25	2018-06-22	3.9	4.12	—	4.2	0.010	1.32	0.0	0.07	14.14	0.01	1.835	8.19	7.64	6.5	93.5	0.0	-4.93	0.71	0.80	1.58	4.2	0.004	0.85	0.0	0.05	15.98	0.00	2.082	11.46	0.93	4.7	95.3	0.0	-2.14	1.88	0.66	0.85	1.41	40950	5370	15	0	0	0	0	logfile
✔	6ToA	10542	2023-08-15	2019-12-11	3.47	3.57	—	3.5	0.009	1.24	0.0	0.07	10.85	0.01	2.110	11.06	0.54	11.8	88.0	0.1	-5.85	0.77	0.86	3.69	3.5	0.003	0.77	0.0	0.04	14.76	0.01	2.124	12.06	0.63	6.9	93.0	0.1	-1.82	1.61	0.76	0.87	2.57	67896	9006	42	0	0	0	0	logfile
✔	7E87	31011	2023-08-13	2021-03-01	3.4	2.60	3.28	3.4	0.003	0.65	0.0	0.04	13.86	0.00	2.111	13.52	0.00	7.0	93.0	0.0	-0.03	0.60	0.77	1.57	3.4	0.003	0.69	0.0	0.04	16.48	0.00	2.181	13.63	0.49	6.6	93.4	0.0	0.30	1.19	0.60	0.79	1.33	13304	1664	8	0	0	0	0	logfile
✘	7P14	13155	2023-08-09	2021-07-01	3.66	3.82	3.50	3.8	0.004	0.64	0.0	0.04	16.56	0.00	2.295	7.45	0.00	2.7	97.3	0.0	1.11	0.60	0.78	2.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3796	454	3	0	3	0	0	logfile
✔	7WED	32447	2023-08-09	2021-12-23	3.5	3.62	—	3.7	0.003	0.70	0.0	0.05	13.75	0.01	2.285	7.13	0.00	8.2	91.8	0.0	-1.64	0.57	0.77	2.25	3.6	0.004	0.69	0.0	0.04	16.64	0.00	2.248	7.29	0.54	9.2	90.8	0.0	-1.26	1.14	0.57	0.79	1.83	3358	431	3	0	0	0	0	logfile
✔	7E39	30977	2023-08-09	2021-02-08	3.7	3.11	—	2.9	0.005	0.77	0.0	0.05	14.37	0.01	2.130	15.98	0.00	10.1	89.9	0.0	-3.52	0.50	0.74	2.30	2.9	0.003	0.63	0.0	0.05	15.71	0.00	2.190	10.48	0.00	5.2	94.8	0.0	-2.15	0.43	0.49	0.73	2.16	3074	414	4	0	1	0	0	logfile
✔	6CAJ	7442	2023-08-18	2018-01-31	2.8	2.84	—	4.2	0.008	0.88	0.0	0.17	9.84	0.01	1.467	5.88	0.24	4.5	95.5	0.0	-3.63	0.33	0.15	2.28	2.9	0.004	0.69	0.0	0.04	16.38	0.00	2.142	11.46	2.76	5.1	94.9	0.0	-0.19	1.21	0.75	0.85	2.84	24295	3210	11	0	1	0	0	logfile
✔	8DBi	27285	2023-08-13	2022-06-14	2.0	2.07	2.03	2.0	0.012	1.17	0.0	0.06	18.16	0.04	1.910	5.92	1.15	4.3	95.7	0.0	0.57	0.73	0.87	6.48	2.0	0.003	1.62	0.0	0.05	16.44	0.00	1.844	5.01	1.91	3.9	96.1	0.0	0.83	0.89	0.74	0.91	6.36	14496	1854	18	0	30	12	0	logfile
✔	6SL1	10234	2023-08-16	2019-08-16	3.6	3.62	—	3.5	0.011	0.83	0.0	0.05	14.89	0.01	2.016	13.54	6.72	8.4	91.4	0.2	-4.42	0.72	0.80	2.39	3.5	0.003	0.65	0.0	0.04	16.30	0.00	2.109	8.24	0.26	4.0	96.0	0.0	0.30	0.82	0.72	0.80	1.85	21041	2652	1	0	2	0	0	logfile
✔	7MCA	23755	2023-08-18	2021-04-01	3.6	3.75	3.58	3.8	0.007	0.98	0.0	0.06	19.21	0.01	1.053	8.11	0.75	8.2	91.7	0.1	-5.13	0.77	0.79	2.32	3.7	0.005	0.70	0.0	0.04	20.09	0.00	1.910	11.17	0.71	9.2	90.8	0.0	-2.25	1.98	0.77	0.81	2.15	24692	2760	13	100	8	0	0	logfile
✔	6TNT	10536	2023-08-12	2019-12-10	3.78	4.15	—	3.8	0.005	0.66	0.0	0.04	14.23	0.00	1.949	14.34	9.38	7.1	92.7	0.2	-2.25	0.90	0.85	1.37	3.8	0.003	0.71	0.0	0.04	15.47	0.00	2.020	13.73	0.33	6.6	93.4	0.1	0.70	1.31	0.90	0.85	1.12	63827	8109	21	0	3	0	0	logfile
✔	7ND3	12274	2023-08-19	2021-01-30	3.7	3.99	—	3.8	0.003	0.56	0.0	0.05	11.33	0.00	2.159	3.51	0.64	3.7	96.2	0.1	-0.43	0.82	0.83	1.98	3.8	0.003	0.63	0.0	0.04	13.80	0.00	2.078	9.15	0.19	3.8	96.1	0.1	0.41	0.72	0.83	0.84	1.80	25050	3194	19	0	49	0	0	logfile
✔	8GXZ	34366	2023-08-20	2022-09-21	3.1	2.45	3.10	3.0	0.006	0.54	0.0	0.04	13.81	0.00	1.826	6.59	0.00	4.2	95.8	0.0	0.46	0.54	0.74	3.39	3.0	0.005	0.66	0.0	0.05	16.70	0.01	1.903	8.11	0.26	3.2	96.8	0.0	0.03	2.14	0.68	0.83	3.06	29499	3788	14	0	3	0	0	logfile
✔	7Z7X	14539	2023-08-19	2022-03-16	3.3	3.02	3.24	3.2	0.006	0.72	0.0	0.05	13.34	0.00	2.149	8.13	0.11	4.3	95.7	0.0	-0.13	0.73	0.82	2.95	3.2	0.004	0.57	0.0	0.04	14.75	0.00	2.169	7.72	0.39	4.2	95.8	0.0	0.24	0.34	0.74	0.84	2.58	26906	3353	29	0	66	0	0	logfile
✔	6J2Q	9771	2023-08-09	2019-01-02	3.8	3.95	—	3.9	0.002	0.40	0.0	0.04	7.17	0.00	2.202	6.58	0.00	5.5	94.4	0.1	-3.50	0.77	0.68	0.88	3.9	0.003	0.74	0.0	0.04	15.50	0.00	2.058	15.76	0.38	4.1	95.8	0.1	-0.48	2.27	0.82	0.76	1.06	106311	13518	47	0	0	0	0	logfile
✔	7CAC	30326	2023-08-19	2020-06-08	3.55	3.83	—	3.6	0.008	0.89	0.0	0.06	9.66	0.00	1.078	25.83	1.02	5.5	94.3	0.3	-3.22	0.77	0.65	2.65	3.6	0.006	0.71	0.0	0.05	12.28	0.00	2.130	13.82	0.16	5.2	94.7	0.1	-0.88	1.22	0.86	0.78	2.26	28122	3499	23	0	60	0	0	logfile
✔	6M52	30083	2023-08-22	2020-03-09	2.6	2.82	—	2.8	0.009	0.94	0.0	0.06	15.32	0.00	2.390	0.63	0.00	4.7	95.3	0.0	-0.23	0.69	0.86	3.58	2.8	0.003	0.55	0.0	0.04	17.56	0.00	2.339	1.00	1.44	3.7	96.3	0.0	3.71	0.32	0.80	0.91	2.44	33382	4104	38	0	6	8	0	logfile
✔	6J30	9773	2023-08-09	2019-01-03	4.5	4.74	—	4.6	0.002	0.44	0.0	0.04	7.35	0.00	2.093	8.60	0.07	6.4	93.4	0.3	-3.38	0.86	0.72	—	4.5	0.004	0.76	0.0	0.04	12.18	0.00	1.918	21.54	0.01	5.4	94.4	0.2	-0.88	1.91	0.89	0.77	—	106227	13504	47	0	0	0	0	logfile

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