Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N8Y	24249	2023-11-20	2021-06-16	3.65	3.83	—	3.8	0.005	0.98	0.0	0.06	14.98	0.01	2.293	8.21	0.69	8.9	90.9	0.3	-5.05	0.70	0.73	1.55	3.8	0.003	0.67	0.0	0.04	16.22	0.00	1.997	11.15	0.46	9.4	90.6	0.0	-2.57	0.60	0.70	0.75	1.16	16162	2074	4	0	0	0	0	logfile
✔	7RLF	24528	2023-11-21	2021-07-23	3.1	3.36	—	3.0	0.004	0.58	0.0	0.04	14.61	0.00	2.042	12.48	0.19	3.9	95.9	0.3	0.50	0.85	0.83	2.17	3.0	0.004	0.57	0.0	0.04	15.08	0.00	1.953	9.62	0.11	3.7	96.1	0.2	0.89	0.40	0.89	0.88	2.25	34578	4368	12	0	24	0	0	logfile
✔	7DFG	30663	2023-11-15	2020-11-08	2.7	2.83	—	2.8	0.012	0.96	0.0	0.06	13.72	0.01	2.062	4.17	0.38	2.7	97.3	0.0	-3.02	0.74	0.87	4.18	2.8	0.005	0.57	0.0	0.04	15.33	0.00	1.964	7.03	1.88	2.5	97.5	0.0	-0.07	1.57	0.73	0.87	3.71	10223	1200	10	28	9	5	0	logfile
✔	8H8B	34541	2023-11-14	2022-10-22	3.16	3.37	3.20	3.3	0.001	0.46	0.0	0.04	13.00	0.00	2.226	6.42	0.67	6.3	93.7	0.0	-2.99	0.70	0.76	2.74	3.3	0.003	0.62	0.0	0.04	15.26	0.00	2.256	6.60	0.34	9.5	90.5	0.0	-1.76	0.61	0.74	0.85	3.67	8344	1027	1	0	0	0	0	logfile
✔	8CSY	26975	2023-11-13	2022-05-13	2.7	2.51	2.69	2.6	0.003	0.56	0.0	0.04	14.36	0.00	2.224	4.67	4.06	1.6	98.4	0.0	1.07	0.63	0.86	4.96	2.6	0.003	0.54	0.0	0.04	17.50	0.00	2.137	6.84	2.03	1.6	98.4	0.0	1.15	0.81	0.63	0.87	4.32	4638	584	4	0	0	19	0	logfile
✔	7RLD	24526	2023-11-21	2021-07-23	3.4	3.68	—	3.1	0.002	0.66	0.0	0.04	14.57	0.00	1.692	7.65	0.00	3.8	96.0	0.1	-1.35	0.87	0.78	1.31	3.2	0.006	0.76	0.0	0.05	15.23	0.00	2.020	13.20	0.24	5.2	94.8	0.0	-0.58	1.63	0.90	0.87	2.08	34854	4410	12	0	12	0	0	logfile
✔	6Y5D	10694	2023-11-20	2020-02-25	4.1	5.00	—	4.0	0.013	1.23	0.0	0.07	25.87	0.01	2.251	1.31	0.11	2.0	97.9	0.1	0.59	0.86	0.76	—	4.1	0.004	0.64	0.0	0.04	26.50	0.00	1.876	10.76	0.00	2.7	97.3	0.0	0.75	1.29	0.87	0.78	—	30372	2218	31	612	11	0	0	logfile
✔	6QWL	4660	2023-11-15	2019-03-05	4.1	4.22	—	4.1	0.008	1.01	0.0	0.06	16.06	0.01	2.214	10.07	0.93	10.8	89.1	0.1	-4.69	0.75	0.74	—	4.1	0.003	0.68	0.0	0.04	14.87	0.00	2.205	14.84	0.00	7.4	92.6	0.0	-1.59	2.24	0.75	0.73	—	10408	1244	5	26	0	0	0	logfile
✔	5oNV	3835	2023-11-16	2017-08-04	4.1	4.21	3.90	4.1	0.013	1.56	0.0	0.07	11.90	0.02	1.996	2.82	0.00	6.3	90.2	3.6	-2.61	0.68	0.83	—	4.1	0.003	0.76	0.0	0.04	13.54	0.00	1.942	13.52	0.13	5.1	94.6	0.3	0.14	1.55	0.69	0.84	—	14640	1855	10	0	10	0	0	logfile
✔	6WPK	21863	2023-11-21	2020-04-27	3.3	3.38	—	3.3	0.018	1.13	0.0	0.04	15.34	0.00	2.277	10.97	0.65	7.8	92.2	0.0	-3.81	0.75	0.84	2.02	3.3	0.003	0.65	0.0	0.04	16.56	0.00	2.373	6.62	0.39	6.1	93.9	0.0	0.26	0.44	0.74	0.84	1.52	33229	4376	8	0	0	0	0	logfile
✔	7KB5	22787	2023-11-14	2020-10-01	3.8	4.51	3.86	4.0	0.004	0.64	0.0	0.04	13.76	0.00	2.163	7.30	0.00	4.4	95.6	0.0	-1.47	0.65	0.84	1.16	4.0	0.005	0.70	0.0	0.04	15.11	0.00	2.152	10.28	0.29	4.0	96.0	0.0	1.97	0.54	0.65	0.85	1.30	9777	1252	6	0	0	0	0	logfile
✔	7VNQ	32045	2023-11-16	2021-10-11	2.96	3.80	—	3.5	0.010	1.02	0.0	0.06	15.91	0.01	2.207	12.52	6.90	5.7	93.9	0.4	-1.00	0.50	0.45	1.23	3.5	0.005	0.97	0.0	0.05	17.95	0.01	2.111	22.25	3.20	5.5	94.3	0.2	0.74	1.75	0.59	0.80	1.55	15507	1920	12	0	7	0	0	logfile
✔	7RE1	24430	2023-11-18	2021-07-12	2.91	3.29	—	3.2	0.006	0.73	0.0	0.13	14.43	0.00	1.787	8.02	8.69	6.0	94.0	0.0	-1.74	0.70	0.74	3.20	3.1	0.003	0.64	0.0	0.04	15.53	0.00	1.894	9.98	4.69	6.2	93.8	0.0	-0.78	1.20	0.71	0.75	3.05	21825	2553	19	71	19	137	0	logfile
✔	7STH	25428	2023-11-17	2021-11-13	3.5	4.00	—	3.7	0.003	0.56	0.0	0.04	13.68	0.00	2.200	9.57	0.38	7.5	92.4	0.2	-1.32	0.85	0.83	2.05	3.8	0.003	0.59	0.0	0.04	15.02	0.00	2.160	11.21	0.13	6.2	93.8	0.1	-1.13	0.39	0.85	0.82	2.24	14010	1736	4	0	0	0	0	logfile
✔	7PFX	13383	2023-11-16	2021-08-12	4.3	7.46	—	4.0	0.006	0.88	0.0	0.05	30.33	0.01	2.234	6.11	0.00	1.3	98.7	0.0	0.30	0.91	0.85	—	4.0	0.005	0.68	0.0	0.04	30.70	0.00	2.126	21.67	0.00	2.7	97.3	0.0	1.55	1.57	0.91	0.86	—	13880	843	11	354	0	0	0	logfile
✔	7XPX	33385	2023-11-16	2022-05-06	3.2	3.32	3.18	3.3	0.004	0.61	0.0	0.04	27.71	0.00	2.185	10.26	0.00	3.6	96.4	0.0	0.82	0.67	0.79	2.86	3.3	0.003	0.55	0.0	0.03	27.72	0.00	2.181	9.28	0.13	2.7	97.3	0.0	1.55	1.06	0.57	0.79	2.16	13408	934	11	290	1	0	0	logfile
✔	7YoU	33987	2023-11-17	2022-08-02	3.41	3.21	3.36	3.3	0.008	1.00	0.0	0.06	10.41	0.01	2.288	5.17	0.34	6.9	93.1	0.0	-3.52	0.78	0.83	2.72	3.3	0.003	0.69	0.0	0.04	14.48	0.00	2.165	11.03	0.20	4.7	95.3	0.0	0.56	1.67	0.79	0.84	1.63	18266	2321	5	0	0	0	0	logfile
✔	7VGZ	31981	2023-11-15	2021-09-20	3.3	3.80	—	3.7	0.005	0.68	0.0	0.05	13.58	0.00	2.137	10.14	0.21	3.3	96.7	0.0	-0.10	0.74	0.83	3.27	3.7	0.003	0.62	0.0	0.04	15.15	0.00	2.127	9.28	0.21	2.9	97.1	0.0	0.17	0.48	0.73	0.84	2.33	8790	1125	6	0	2	0	0	logfile
✘	6BCo	7083	2023-11-20	2017-10-20	2.88	2.96	—	3.0	0.007	0.98	0.0	0.05	9.77	0.01	2.286	3.76	0.37	5.8	94.2	0.0	-4.72	0.67	0.82	3.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30432	3808	8	0	4	0	0	logfile
✔	7F03	31395	2023-11-14	2021-06-03	3.29	3.68	—	3.6	0.005	0.75	0.0	0.04	13.83	0.01	1.885	10.01	0.11	5.2	94.8	0.0	-0.34	0.70	0.84	2.85	3.6	0.003	0.64	0.0	0.04	15.65	0.00	1.954	9.79	0.33	5.6	94.4	0.0	0.33	0.97	0.71	0.86	2.67	8891	1130	11	0	5	4	0	logfile

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