Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6M49	30074	2023-04-19	2020-03-06	3.7	4.45	—	4.4	0.008	0.85	0.0	0.05	14.32	0.01	2.079	14.80	0.98	7.1	92.6	0.2	-4.00	0.46	0.70	1.15	4.4	0.003	0.83	0.0	0.04	16.10	0.00	2.207	9.92	0.66	2.7	97.3	0.0	1.88	3.60	0.48	0.74	1.01	3098	420	3	0	1	0	0	logfile
✔	7F75	31485	2023-04-28	2021-06-28	4.2	4.30	—	4.2	0.007	0.99	0.0	0.06	19.32	0.01	1.879	10.06	2.25	9.0	90.8	0.2	-4.47	0.73	0.77	—	4.2	0.004	0.71	0.0	0.04	18.41	0.00	2.032	11.38	0.97	9.5	90.5	0.0	-1.83	1.48	0.74	0.77	—	26887	3410	13	122	3	0	0	logfile
✔	6NF6	9361	2023-04-20	2018-12-18	3.32	3.42	—	3.4	0.007	0.98	0.0	0.06	15.65	0.01	2.309	4.98	0.00	4.5	95.2	0.3	-2.74	0.54	0.79	2.76	3.4	0.003	0.64	0.0	0.04	16.58	0.00	2.296	12.04	0.41	5.0	95.0	0.0	2.23	0.53	0.55	0.80	2.34	6598	822	4	0	2	0	0	logfile
✔	6ZKF	11247	2023-04-24	2020-06-30	2.8	2.93	—	2.9	0.008	1.02	0.0	1.03	11.79	0.01	2.232	5.07	0.06	3.4	96.6	0.0	-2.83	0.73	0.86	4.28	2.9	0.009	1.59	0.0	0.31	16.18	0.00	2.070	11.11	1.75	3.0	97.0	0.0	0.75	1.62	0.73	0.87	3.55	67440	8158	69	0	46	0	0	logfile
✔	7RU6	24698	2023-04-20	2021-08-16	4.4	4.33	3.79	4.2	0.003	0.59	0.0	0.04	15.25	0.00	2.027	10.32	0.00	0.3	99.7	0.0	3.15	0.71	0.67	—	4.2	0.002	0.50	0.0	0.03	13.30	0.00	2.118	7.19	0.34	1.9	98.1	0.0	4.08	0.78	0.74	0.70	—	5426	331	2	0	0	0	2725	logfile
✔	6VP0	21302	2023-04-20	2020-02-01	3.1	3.70	3.19	3.6	0.011	1.37	0.0	0.05	19.19	0.00	2.316	5.31	1.96	3.5	96.5	0.0	-1.11	0.58	0.77	3.02	3.6	0.003	0.54	0.0	0.04	17.18	0.00	2.329	6.34	0.14	2.0	98.0	0.0	2.59	1.36	0.56	0.78	2.35	7210	808	4	0	12	0	0	logfile
✔	7X5H	33014	2023-04-21	2022-03-04	3.1	3.30	—	3.3	0.003	0.52	0.0	0.04	14.22	0.00	2.148	4.44	0.00	1.9	98.1	0.0	2.43	0.64	0.79	2.26	3.3	0.003	0.51	0.0	0.04	15.49	0.00	2.162	6.69	0.32	2.4	97.6	0.0	1.62	0.42	0.66	0.83	2.36	8768	1128	5	0	1	0	0	logfile
✘	7XAV	33100	2023-04-20	2022-03-19	2.87	3.03	2.89	3.1	0.009	1.05	0.0	0.06	14.14	0.01	1.494	7.90	0.71	8.3	91.7	0.0	-4.66	0.63	0.77	2.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8410	1140	6	0	1	0	0	logfile
✔	7XSN	33428	2023-04-20	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	16.67	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.61	0.0	0.03	16.36	0.00	2.111	20.82	0.00	0.0	0.0	0.0	—	0.30	0.92	0.87	—	8279	0	1	387	0	0	0	logfile
✔	7F1S	31424	2023-04-20	2021-06-09	2.8	3.44	—	3.2	0.002	0.55	0.0	0.04	10.91	0.00	2.228	9.48	0.00	3.5	96.5	0.0	-1.65	0.69	0.76	1.35	3.2	0.003	0.69	0.0	0.04	14.92	0.00	2.156	13.22	2.68	4.0	96.0	0.0	0.06	1.18	0.70	0.80	2.16	6209	847	4	0	0	0	0	logfile
✔	6ZKi	11250	2023-04-24	2020-06-30	2.8	2.89	—	2.8	0.009	1.05	0.0	1.03	11.89	0.01	2.233	5.21	0.06	3.7	96.2	0.1	-2.73	0.75	0.87	4.58	2.8	0.008	1.58	0.0	0.31	15.96	0.00	2.086	10.71	1.96	3.2	96.8	0.0	0.81	1.20	0.75	0.88	3.58	67479	8163	70	0	46	0	0	logfile
✔	6RFL	4868	2023-04-20	2019-04-15	2.76	2.94	—	2.9	0.005	0.76	0.0	0.08	14.26	0.01	1.641	4.30	4.82	6.2	93.7	0.0	-3.54	0.73	0.83	3.73	2.9	0.003	0.60	0.0	0.04	16.39	0.00	2.092	8.47	2.67	6.1	93.9	0.0	-0.76	0.51	0.75	0.85	3.38	51788	6194	29	63	5	61	0	logfile
✔	6WFQ	21652	2023-04-20	2020-04-03	3.9	4.88	3.77	3.9	0.002	0.49	0.0	0.03	16.66	0.00	2.265	8.11	0.80	4.3	95.7	0.0	-2.49	0.84	0.78	0.76	3.8	0.003	0.92	0.0	0.04	19.12	0.00	2.154	16.10	0.00	6.3	93.7	0.0	-0.17	0.73	0.85	0.80	0.54	4164	447	4	30	0	0	0	logfile
✔	7XSK	33425	2023-04-22	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	15.94	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.007	0.68	0.0	0.04	18.66	0.01	1.750	33.29	0.00	0.0	0.0	0.0	—	1.90	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✘	6XWR	10636	2023-04-21	2020-01-24	3.22	3.96	—	3.7	0.008	0.75	0.0	0.05	12.81	0.00	2.122	11.13	0.00	5.7	94.3	0.0	-2.71	0.74	0.85	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9564	1278	3	0	0	0	0	logfile
✔	7ADZ	11734	2023-04-25	2020-09-17	2.5	2.56	—	2.5	0.015	1.54	0.0	0.09	11.19	0.01	1.343	4.44	0.08	2.0	98.0	0.0	-0.11	0.64	0.85	4.72	2.5	0.003	0.60	0.0	0.04	16.34	0.00	2.160	3.15	1.73	2.7	97.3	0.0	0.40	0.66	0.66	0.88	4.16	67794	8508	30	0	0	0	0	logfile
✔	7QDY	13927	2023-04-26	2021-12-01	3.1	2.87	3.15	3.0	0.009	1.11	0.0	0.06	14.48	0.01	1.910	11.71	0.00	5.7	94.2	0.1	-1.41	0.77	0.80	2.42	3.0	0.004	0.72	0.0	0.04	16.09	0.00	2.004	8.27	0.46	9.4	90.6	0.0	-0.48	0.44	0.80	0.86	2.12	22924	2991	5	6	0	0	0	logfile
✔	6XMT	22263	2023-04-20	2020-06-30	3.3	3.96	3.42	3.7	0.004	0.61	0.0	0.04	12.44	0.00	1.814	7.30	0.00	4.5	95.5	0.0	-2.38	0.72	0.82	2.61	3.8	0.002	0.54	0.0	0.04	14.21	0.00	2.054	5.85	0.11	3.4	96.6	0.0	0.58	0.42	0.72	0.85	1.95	8324	1092	1	0	2	0	0	logfile
✔	6ZKM	11254	2023-04-23	2020-06-30	2.8	2.40	—	2.6	0.008	1.03	0.0	1.04	11.60	0.01	2.229	5.03	0.10	3.5	96.5	0.0	-2.74	0.65	0.82	4.06	2.7	0.008	1.60	0.0	0.31	16.48	0.00	2.084	11.77	1.98	3.0	97.0	0.0	0.60	1.25	0.65	0.84	3.21	65955	8002	67	0	41	0	0	logfile
✔	7VXF	32178	2023-04-29	2021-11-12	3.6	4.01	—	3.8	0.002	0.48	0.0	0.04	8.03	0.00	1.780	7.55	0.03	4.0	95.9	0.1	-2.43	0.47	0.48	0.65	3.9	0.003	0.67	0.0	0.04	14.20	0.00	2.036	11.80	0.33	3.9	96.1	0.0	-0.17	1.19	0.56	0.71	1.04	30079	3814	4	0	0	0	0	logfile

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