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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6M49 | 30074 | 2023-04-19 | 2020-03-06 | 3.7 | 4.45 | — | 4.4 | 0.008 | 0.85 | 0.0 | 0.05 | 14.32 | 0.01 | 2.079 | 14.80 | 0.98 | 7.1 | 92.6 | 0.2 | -4.00 | 0.46 | 0.70 | 1.15 | 4.4 | 0.003 | 0.83 | 0.0 | 0.04 | 16.10 | 0.00 | 2.207 | 9.92 | 0.66 | 2.7 | 97.3 | 0.0 | 1.88 | 3.60 | 0.48 | 0.74 | 1.01 | 3098 | 420 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7F75 | 31485 | 2023-04-28 | 2021-06-28 | 4.2 | 4.30 | — | 4.2 | 0.007 | 0.99 | 0.0 | 0.06 | 19.32 | 0.01 | 1.879 | 10.06 | 2.25 | 9.0 | 90.8 | 0.2 | -4.47 | 0.73 | 0.77 | — | 4.2 | 0.004 | 0.71 | 0.0 | 0.04 | 18.41 | 0.00 | 2.032 | 11.38 | 0.97 | 9.5 | 90.5 | 0.0 | -1.83 | 1.48 | 0.74 | 0.77 | — | 26887 | 3410 | 13 | 122 | 3 | 0 | 0 | logfile |
✔ | 6NF6 | 9361 | 2023-04-20 | 2018-12-18 | 3.32 | 3.42 | — | 3.4 | 0.007 | 0.98 | 0.0 | 0.06 | 15.65 | 0.01 | 2.309 | 4.98 | 0.00 | 4.5 | 95.2 | 0.3 | -2.74 | 0.54 | 0.79 | 2.76 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 16.58 | 0.00 | 2.296 | 12.04 | 0.41 | 5.0 | 95.0 | 0.0 | 2.23 | 0.53 | 0.55 | 0.80 | 2.34 | 6598 | 822 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6ZKF | 11247 | 2023-04-24 | 2020-06-30 | 2.8 | 2.93 | — | 2.9 | 0.008 | 1.02 | 0.0 | 1.03 | 11.79 | 0.01 | 2.232 | 5.07 | 0.06 | 3.4 | 96.6 | 0.0 | -2.83 | 0.73 | 0.86 | 4.28 | 2.9 | 0.009 | 1.59 | 0.0 | 0.31 | 16.18 | 0.00 | 2.070 | 11.11 | 1.75 | 3.0 | 97.0 | 0.0 | 0.75 | 1.62 | 0.73 | 0.87 | 3.55 | 67440 | 8158 | 69 | 0 | 46 | 0 | 0 | logfile |
✔ | 7RU6 | 24698 | 2023-04-20 | 2021-08-16 | 4.4 | 4.33 | 3.79 | 4.2 | 0.003 | 0.59 | 0.0 | 0.04 | 15.25 | 0.00 | 2.027 | 10.32 | 0.00 | 0.3 | 99.7 | 0.0 | 3.15 | 0.71 | 0.67 | — | 4.2 | 0.002 | 0.50 | 0.0 | 0.03 | 13.30 | 0.00 | 2.118 | 7.19 | 0.34 | 1.9 | 98.1 | 0.0 | 4.08 | 0.78 | 0.74 | 0.70 | — | 5426 | 331 | 2 | 0 | 0 | 0 | 2725 | logfile |
✔ | 6VP0 | 21302 | 2023-04-20 | 2020-02-01 | 3.1 | 3.70 | 3.19 | 3.6 | 0.011 | 1.37 | 0.0 | 0.05 | 19.19 | 0.00 | 2.316 | 5.31 | 1.96 | 3.5 | 96.5 | 0.0 | -1.11 | 0.58 | 0.77 | 3.02 | 3.6 | 0.003 | 0.54 | 0.0 | 0.04 | 17.18 | 0.00 | 2.329 | 6.34 | 0.14 | 2.0 | 98.0 | 0.0 | 2.59 | 1.36 | 0.56 | 0.78 | 2.35 | 7210 | 808 | 4 | 0 | 12 | 0 | 0 | logfile |
✔ | 7X5H | 33014 | 2023-04-21 | 2022-03-04 | 3.1 | 3.30 | — | 3.3 | 0.003 | 0.52 | 0.0 | 0.04 | 14.22 | 0.00 | 2.148 | 4.44 | 0.00 | 1.9 | 98.1 | 0.0 | 2.43 | 0.64 | 0.79 | 2.26 | 3.3 | 0.003 | 0.51 | 0.0 | 0.04 | 15.49 | 0.00 | 2.162 | 6.69 | 0.32 | 2.4 | 97.6 | 0.0 | 1.62 | 0.42 | 0.66 | 0.83 | 2.36 | 8768 | 1128 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 7XAV | 33100 | 2023-04-20 | 2022-03-19 | 2.87 | 3.03 | 2.89 | 3.1 | 0.009 | 1.05 | 0.0 | 0.06 | 14.14 | 0.01 | 1.494 | 7.90 | 0.71 | 8.3 | 91.7 | 0.0 | -4.66 | 0.63 | 0.77 | 2.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8410 | 1140 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7XSN | 33428 | 2023-04-20 | 2022-05-14 | 3.01 | 4.02 | 3.04 | 3.2 | 0.013 | 1.06 | 0.0 | 0.05 | 16.67 | 0.01 | 2.252 | 5.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.84 | — | 3.2 | 0.006 | 0.61 | 0.0 | 0.03 | 16.36 | 0.00 | 2.111 | 20.82 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.30 | 0.92 | 0.87 | — | 8279 | 0 | 1 | 387 | 0 | 0 | 0 | logfile |
✔ | 7F1S | 31424 | 2023-04-20 | 2021-06-09 | 2.8 | 3.44 | — | 3.2 | 0.002 | 0.55 | 0.0 | 0.04 | 10.91 | 0.00 | 2.228 | 9.48 | 0.00 | 3.5 | 96.5 | 0.0 | -1.65 | 0.69 | 0.76 | 1.35 | 3.2 | 0.003 | 0.69 | 0.0 | 0.04 | 14.92 | 0.00 | 2.156 | 13.22 | 2.68 | 4.0 | 96.0 | 0.0 | 0.06 | 1.18 | 0.70 | 0.80 | 2.16 | 6209 | 847 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZKi | 11250 | 2023-04-24 | 2020-06-30 | 2.8 | 2.89 | — | 2.8 | 0.009 | 1.05 | 0.0 | 1.03 | 11.89 | 0.01 | 2.233 | 5.21 | 0.06 | 3.7 | 96.2 | 0.1 | -2.73 | 0.75 | 0.87 | 4.58 | 2.8 | 0.008 | 1.58 | 0.0 | 0.31 | 15.96 | 0.00 | 2.086 | 10.71 | 1.96 | 3.2 | 96.8 | 0.0 | 0.81 | 1.20 | 0.75 | 0.88 | 3.58 | 67479 | 8163 | 70 | 0 | 46 | 0 | 0 | logfile |
✔ | 6RFL | 4868 | 2023-04-20 | 2019-04-15 | 2.76 | 2.94 | — | 2.9 | 0.005 | 0.76 | 0.0 | 0.08 | 14.26 | 0.01 | 1.641 | 4.30 | 4.82 | 6.2 | 93.7 | 0.0 | -3.54 | 0.73 | 0.83 | 3.73 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 16.39 | 0.00 | 2.092 | 8.47 | 2.67 | 6.1 | 93.9 | 0.0 | -0.76 | 0.51 | 0.75 | 0.85 | 3.38 | 51788 | 6194 | 29 | 63 | 5 | 61 | 0 | logfile |
✔ | 6WFQ | 21652 | 2023-04-20 | 2020-04-03 | 3.9 | 4.88 | 3.77 | 3.9 | 0.002 | 0.49 | 0.0 | 0.03 | 16.66 | 0.00 | 2.265 | 8.11 | 0.80 | 4.3 | 95.7 | 0.0 | -2.49 | 0.84 | 0.78 | 0.76 | 3.8 | 0.003 | 0.92 | 0.0 | 0.04 | 19.12 | 0.00 | 2.154 | 16.10 | 0.00 | 6.3 | 93.7 | 0.0 | -0.17 | 0.73 | 0.85 | 0.80 | 0.54 | 4164 | 447 | 4 | 30 | 0 | 0 | 0 | logfile |
✔ | 7XSK | 33425 | 2023-04-22 | 2022-05-14 | 3.53 | 4.49 | 3.42 | 3.4 | 0.001 | 0.44 | 0.0 | 0.02 | 15.94 | 0.00 | 1.970 | 6.98 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.76 | — | 3.4 | 0.007 | 0.68 | 0.0 | 0.04 | 18.66 | 0.01 | 1.750 | 33.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.90 | 0.91 | 0.83 | — | 12467 | 0 | 1 | 388 | 0 | 0 | 4168 | logfile |
✘ | 6XWR | 10636 | 2023-04-21 | 2020-01-24 | 3.22 | 3.96 | — | 3.7 | 0.008 | 0.75 | 0.0 | 0.05 | 12.81 | 0.00 | 2.122 | 11.13 | 0.00 | 5.7 | 94.3 | 0.0 | -2.71 | 0.74 | 0.85 | 2.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9564 | 1278 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ADZ | 11734 | 2023-04-25 | 2020-09-17 | 2.5 | 2.56 | — | 2.5 | 0.015 | 1.54 | 0.0 | 0.09 | 11.19 | 0.01 | 1.343 | 4.44 | 0.08 | 2.0 | 98.0 | 0.0 | -0.11 | 0.64 | 0.85 | 4.72 | 2.5 | 0.003 | 0.60 | 0.0 | 0.04 | 16.34 | 0.00 | 2.160 | 3.15 | 1.73 | 2.7 | 97.3 | 0.0 | 0.40 | 0.66 | 0.66 | 0.88 | 4.16 | 67794 | 8508 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QDY | 13927 | 2023-04-26 | 2021-12-01 | 3.1 | 2.87 | 3.15 | 3.0 | 0.009 | 1.11 | 0.0 | 0.06 | 14.48 | 0.01 | 1.910 | 11.71 | 0.00 | 5.7 | 94.2 | 0.1 | -1.41 | 0.77 | 0.80 | 2.42 | 3.0 | 0.004 | 0.72 | 0.0 | 0.04 | 16.09 | 0.00 | 2.004 | 8.27 | 0.46 | 9.4 | 90.6 | 0.0 | -0.48 | 0.44 | 0.80 | 0.86 | 2.12 | 22924 | 2991 | 5 | 6 | 0 | 0 | 0 | logfile |
✔ | 6XMT | 22263 | 2023-04-20 | 2020-06-30 | 3.3 | 3.96 | 3.42 | 3.7 | 0.004 | 0.61 | 0.0 | 0.04 | 12.44 | 0.00 | 1.814 | 7.30 | 0.00 | 4.5 | 95.5 | 0.0 | -2.38 | 0.72 | 0.82 | 2.61 | 3.8 | 0.002 | 0.54 | 0.0 | 0.04 | 14.21 | 0.00 | 2.054 | 5.85 | 0.11 | 3.4 | 96.6 | 0.0 | 0.58 | 0.42 | 0.72 | 0.85 | 1.95 | 8324 | 1092 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6ZKM | 11254 | 2023-04-23 | 2020-06-30 | 2.8 | 2.40 | — | 2.6 | 0.008 | 1.03 | 0.0 | 1.04 | 11.60 | 0.01 | 2.229 | 5.03 | 0.10 | 3.5 | 96.5 | 0.0 | -2.74 | 0.65 | 0.82 | 4.06 | 2.7 | 0.008 | 1.60 | 0.0 | 0.31 | 16.48 | 0.00 | 2.084 | 11.77 | 1.98 | 3.0 | 97.0 | 0.0 | 0.60 | 1.25 | 0.65 | 0.84 | 3.21 | 65955 | 8002 | 67 | 0 | 41 | 0 | 0 | logfile |
✔ | 7VXF | 32178 | 2023-04-29 | 2021-11-12 | 3.6 | 4.01 | — | 3.8 | 0.002 | 0.48 | 0.0 | 0.04 | 8.03 | 0.00 | 1.780 | 7.55 | 0.03 | 4.0 | 95.9 | 0.1 | -2.43 | 0.47 | 0.48 | 0.65 | 3.9 | 0.003 | 0.67 | 0.0 | 0.04 | 14.20 | 0.00 | 2.036 | 11.80 | 0.33 | 3.9 | 96.1 | 0.0 | -0.17 | 1.19 | 0.56 | 0.71 | 1.04 | 30079 | 3814 | 4 | 0 | 0 | 0 | 0 | logfile |