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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7CHH | 30374 | 2022-12-16 | 2020-07-05 | 3.49 | 2.44 | — | 20.0 | 0.007 | 1.09 | 0.0 | 0.06 | 15.08 | 0.01 | 2.182 | 4.91 | 3.56 | 5.2 | 94.7 | 0.1 | -2.03 | 0.17 | 0.02 | 0.23 | 2.4 | 0.004 | 0.81 | 0.0 | 0.05 | 15.98 | 0.01 | 1.997 | 16.76 | 0.26 | 7.0 | 93.0 | 0.0 | -1.63 | 1.46 | 0.23 | 0.15 | 0.48 | 29029 | 3704 | 17 | 0 | 41 | 0 | 0 | logfile |
✔ | 6Qi8 | 4552 | 2022-12-13 | 2019-01-18 | 3.75 | 3.92 | — | 10.4 | 0.004 | 0.91 | 0.0 | 0.05 | 16.35 | 0.01 | 1.999 | 4.30 | 0.19 | 5.5 | 94.5 | 0.0 | -5.84 | 0.17 | 0.02 | 0.43 | 9.9 | 0.004 | 0.95 | 0.0 | 0.05 | 17.69 | 0.00 | 2.099 | 19.02 | 0.32 | 8.5 | 91.5 | 0.0 | -2.67 | 1.59 | 0.33 | 0.24 | 0.43 | 14789 | 1907 | 12 | 0 | 6 | 0 | 0 | logfile |
✘ | 8GWA | 34307 | 2022-12-20 | 2022-09-16 | 2.9 | 3.13 | 3.01 | 7.0 | 0.017 | 1.77 | 0.0 | 0.16 | 16.93 | 0.02 | 1.107 | 14.98 | 0.00 | 5.7 | 94.2 | 0.2 | -1.01 | 0.17 | -0.02 | 0.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37660 | 4006 | 27 | 0 | 160 | 0 | 0 | logfile |
✔ | 7ASK | 11895 | 2022-12-12 | 2020-10-27 | 4.3 | 4.39 | — | 4.3 | 0.028 | 2.98 | 47.0 | 0.22 | 18.83 | 0.02 | 0.766 | 14.33 | 2.58 | 16.8 | 73.5 | 9.7 | -6.06 | 0.17 | 0.51 | — | 4.3 | 0.021 | 1.32 | 2.0 | 0.05 | 15.46 | 0.01 | 2.042 | 17.93 | 0.00 | 18.5 | 80.0 | 1.5 | -3.37 | 1.32 | 0.19 | 0.60 | — | 12285 | 1523 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6FU8 | 4319 | 2022-12-11 | 2018-02-26 | 3.2 | 4.43 | 2.97 | 3.8 | 0.013 | 2.11 | 2.0 | 0.10 | 20.18 | 0.02 | 2.617 | 1.47 | 2.78 | 11.2 | 86.2 | 2.5 | -3.87 | 0.17 | 0.42 | 2.23 | 4.1 | 0.003 | 0.82 | 0.0 | 0.04 | 14.91 | 0.00 | 2.261 | 15.40 | 0.00 | 10.0 | 88.8 | 1.2 | -1.84 | 3.11 | 0.23 | 0.62 | -0.89 | 1364 | 82 | 1 | 0 | 0 | 0 | 711 | logfile |
✔ | 5A8L | 3099 | 2022-12-12 | 2015-07-16 | 3.8 | 3.60 | — | 3.5 | 0.004 | 0.67 | 0.0 | 0.02 | 12.36 | 0.00 | 1.435 | 9.01 | 0.95 | 10.3 | 86.8 | 2.9 | -2.06 | 0.18 | 0.43 | 0.47 | 3.5 | 0.006 | 0.97 | 0.0 | 0.05 | 17.64 | 0.01 | 1.991 | 23.78 | 0.57 | 11.9 | 87.0 | 1.1 | -2.68 | 1.53 | 0.23 | 0.63 | 0.73 | 12264 | 624 | 9 | 347 | 0 | 0 | 0 | logfile |
✔ | 6Z5U | 11082 | 2022-12-13 | 2020-05-27 | 3.9 | 4.52 | — | 38.0 | 0.021 | 1.88 | 10.0 | 0.11 | 11.91 | 0.01 | 0.901 | 4.94 | 1.69 | 2.0 | 97.7 | 0.3 | -0.47 | 0.18 | 0.03 | -0.06 | 4.5 | 0.003 | 0.76 | 0.0 | 0.04 | 14.53 | 0.00 | 1.928 | 14.28 | 0.41 | 5.2 | 94.8 | 0.0 | -0.62 | 1.59 | 0.29 | 0.18 | 0.56 | 17880 | 2334 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 5TC1 | 8397 | 2022-12-13 | 2016-09-13 | 3.6 | 3.60 | — | 3.6 | 0.006 | 0.87 | 0.0 | 0.08 | 18.34 | 0.01 | 1.126 | 33.79 | 0.27 | 3.3 | 96.7 | 0.0 | -3.80 | 0.19 | 0.77 | 4.30 | 3.6 | 0.004 | 0.60 | 0.0 | 0.04 | 17.02 | 0.00 | 2.198 | 6.88 | 0.54 | 4.7 | 95.3 | 0.0 | -0.54 | 0.71 | 0.21 | 0.84 | 2.91 | 15393 | 1352 | 10 | 242 | 0 | 0 | 0 | logfile |
✔ | 6EU1 | 3956 | 2022-12-20 | 2017-10-27 | 3.4 | 3.40 | — | 6.6 | 0.005 | 1.13 | 0.0 | 0.06 | 12.93 | 0.01 | 1.732 | 6.56 | 0.50 | 16.1 | 83.5 | 0.4 | -5.70 | 0.20 | 0.01 | 0.29 | 3.4 | 0.004 | 0.90 | 0.0 | 0.05 | 16.67 | 0.01 | 2.063 | 15.47 | 0.68 | 16.1 | 83.7 | 0.2 | -3.44 | 2.55 | 0.64 | 0.64 | 0.72 | 40547 | 5012 | 24 | 43 | 7 | 0 | 0 | logfile |
✔ | 7BHQ | 12190 | 2022-12-12 | 2021-01-11 | 3.2 | 1.77 | 3.76 | 2.6 | 0.003 | 0.50 | 0.0 | 0.04 | 14.12 | 0.00 | 2.168 | 13.46 | 0.00 | 3.0 | 97.0 | 0.0 | 1.03 | 0.20 | 0.46 | 0.97 | 1.9 | 0.003 | 0.63 | 0.0 | 0.04 | 16.58 | 0.00 | 2.076 | 15.42 | 0.37 | 3.0 | 97.0 | 0.0 | 0.69 | 0.84 | 0.21 | 0.50 | 1.17 | 7402 | 1010 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JBS | 6478 | 2022-12-11 | 2015-10-13 | 2.9 | 3.04 | — | 3.2 | 0.010 | 1.32 | 0.0 | 0.06 | 8.67 | 0.01 | 2.510 | 0.00 | 0.00 | 2.9 | 97.1 | 0.0 | 0.51 | 0.21 | 0.76 | 4.15 | 3.1 | 0.003 | 0.63 | 0.0 | 0.04 | 17.65 | 0.00 | 2.262 | 7.24 | 1.97 | 1.7 | 98.3 | 0.0 | 1.01 | 1.32 | 0.21 | 0.80 | 3.18 | 1401 | 175 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6REU | 4857 | 2022-12-18 | 2019-04-12 | 4.2 | 4.32 | 4.74 | 30.0 | 0.006 | 0.99 | 0.0 | 0.06 | 15.07 | 0.01 | 1.681 | 9.47 | 0.42 | 5.7 | 94.1 | 0.1 | -4.88 | 0.21 | 0.03 | — | 30.0 | 0.003 | 0.77 | 0.0 | 0.05 | 13.96 | 0.00 | 1.871 | 17.84 | 0.00 | 6.1 | 93.8 | 0.1 | -1.72 | 1.51 | 0.26 | 0.17 | — | 33899 | 4503 | 25 | 0 | 10 | 0 | 0 | logfile |
✔ | 7X34 | 32978 | 2022-12-11 | 2022-02-27 | 3.1 | 5.47 | 3.72 | 3.1 | 0.009 | 1.17 | 0.0 | 0.05 | 18.59 | 0.01 | 2.316 | 5.71 | 0.00 | 3.1 | 96.9 | 0.0 | -2.86 | 0.21 | 0.78 | 1.18 | 3.2 | 0.004 | 0.76 | 0.0 | 0.04 | 19.73 | 0.00 | 2.145 | 31.83 | 0.00 | 5.1 | 94.9 | 0.0 | 0.07 | 0.60 | 0.21 | 0.75 | 1.18 | 2762 | 100 | 2 | 94 | 0 | 0 | 0 | logfile |
✔ | 6Z3T | 11064 | 2022-12-11 | 2020-05-21 | 2.69 | 3.99 | 3.36 | 3.9 | 0.010 | 1.84 | 1.0 | 0.07 | 18.57 | 0.01 | 2.284 | 6.72 | 1.60 | 9.6 | 90.2 | 0.2 | -5.84 | 0.21 | 0.59 | 1.55 | 3.9 | 0.003 | 1.12 | 0.0 | 0.04 | 19.79 | 0.00 | 2.256 | 13.72 | 2.14 | 7.7 | 92.3 | 0.0 | -1.72 | 0.92 | 0.21 | 0.66 | 1.55 | 3608 | 441 | 4 | 0 | 21 | 0 | 0 | logfile |
✔ | 5MPD | 3534 | 2022-12-21 | 2016-12-16 | 4.1 | 4.14 | — | 4.1 | 0.035 | 3.40 | 330.0 | 0.20 | 17.76 | 0.03 | 0.656 | 3.85 | 2.78 | 5.6 | 92.3 | 2.1 | -2.14 | 0.21 | 0.37 | — | 4.1 | 0.004 | 0.79 | 0.0 | 0.04 | 15.38 | 0.00 | 2.021 | 16.92 | 0.04 | 5.6 | 94.2 | 0.2 | -0.45 | 1.30 | 0.27 | 0.61 | — | 40974 | 5142 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W6P | 32331 | 2022-12-12 | 2021-12-02 | 3.47 | 3.79 | — | 9.6 | 0.004 | 0.69 | 0.0 | 0.04 | 13.77 | 0.00 | 2.196 | 14.90 | 0.11 | 7.0 | 93.0 | 0.0 | -0.94 | 0.22 | 0.11 | 0.18 | 9.2 | 0.002 | 0.63 | 0.0 | 0.04 | 15.18 | 0.00 | 2.193 | 12.74 | 0.22 | 4.7 | 95.3 | 0.0 | -0.44 | 1.88 | 0.29 | 0.20 | 0.86 | 8408 | 1083 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7FG3 | 31577 | 2022-12-12 | 2021-07-25 | 3.9 | 3.62 | — | 4.0 | 0.006 | 1.13 | 0.0 | 0.06 | 14.47 | 0.01 | 1.929 | 37.34 | 0.00 | 18.5 | 80.8 | 0.7 | -4.60 | 0.22 | 0.47 | -0.27 | 4.0 | 0.004 | 0.91 | 0.0 | 0.05 | 16.70 | 0.01 | 2.098 | 25.10 | 0.40 | 15.9 | 83.5 | 0.5 | -3.58 | 0.78 | 0.23 | 0.45 | -0.23 | 9054 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RJU | 4906 | 2022-12-11 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 10.0 | 0.003 | 0.66 | 0.0 | 0.03 | 16.23 | 0.00 | 2.422 | 6.03 | 0.00 | 3.9 | 96.1 | 0.0 | -0.32 | 1.40 | 0.27 | 0.03 | -0.67 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |
✔ | 3JC2 | 3245 | 2022-12-11 | 2015-11-15 | 3.6 | 3.58 | 3.97 | 3.7 | 0.012 | 1.63 | 2.0 | 0.08 | 14.90 | 0.01 | 1.175 | 18.51 | 7.32 | 11.5 | 84.5 | 4.0 | -4.52 | 0.22 | 0.59 | 1.48 | 3.6 | 0.003 | 0.81 | 0.0 | 0.04 | 17.10 | 0.00 | 2.171 | 13.19 | 0.24 | 6.6 | 92.8 | 0.6 | -1.30 | 3.32 | 0.23 | 0.52 | 1.58 | 3911 | 482 | 4 | 0 | 32 | 0 | 0 | logfile |
✔ | 7BC5 | 12139 | 2022-12-11 | 2020-12-18 | 3.1 | 3.06 | 3.11 | 3.1 | 0.005 | 1.05 | 0.0 | 0.05 | 15.92 | 0.01 | 2.314 | 7.83 | 0.76 | 8.2 | 91.8 | 0.0 | -5.64 | 0.23 | 0.62 | 0.92 | 3.0 | 0.002 | 0.69 | 0.0 | 0.04 | 16.82 | 0.00 | 2.275 | 14.00 | 0.76 | 6.9 | 93.1 | 0.0 | -2.62 | 1.28 | 0.23 | 0.57 | 0.92 | 1200 | 161 | 1 | 0 | 0 | 0 | 0 | logfile |