Table showing results for July 2022

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ASK	11895	2022-07-03	2020-10-27	4.3	4.39	—	4.3	0.028	2.98	47.0	0.22	18.83	0.02	0.766	14.61	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.021	1.28	3.0	0.05	15.61	0.01	1.982	20.29	0.00	19.5	78.9	1.6	-3.52	1.30	0.19	0.61	—	12285	1523	1	0	2	0	0	logfile
✔	7CHH	30374	2022-07-06	2020-07-05	3.49	2.44	—	20.0	0.007	1.09	0.0	0.06	15.08	0.01	2.182	4.90	3.56	5.2	94.7	0.1	-2.03	0.17	0.02	0.23	2.3	0.012	1.17	0.0	0.05	15.96	0.01	1.918	20.25	0.00	6.6	93.4	0.0	-1.77	1.33	0.21	0.12	0.40	29029	3704	17	0	41	0	0	logfile
✔	6Z5U	11082	2022-07-04	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	11.93	0.01	0.901	4.94	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.1	0.008	0.89	1.0	0.04	14.43	0.01	2.092	11.99	0.15	4.7	95.2	0.0	-0.06	1.51	0.27	0.13	0.35	17880	2334	14	0	4	0	0	logfile
✔	5A8L	3099	2022-07-03	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	9.01	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.007	0.91	0.0	0.03	16.17	0.01	1.948	15.58	0.38	8.5	90.6	1.0	-1.53	1.40	0.22	0.61	0.47	12264	624	9	347	0	0	0	logfile
✔	5TC1	8397	2022-07-04	2016-09-13	3.6	3.60	—	3.6	0.006	0.87	0.0	0.08	18.34	0.01	1.126	33.79	0.27	3.3	96.7	0.0	-3.80	0.19	0.77	4.30	3.6	0.004	0.60	0.0	0.04	17.02	0.00	2.198	6.97	0.54	4.7	95.3	0.0	-0.54	0.71	0.21	0.84	2.91	15393	1352	10	242	0	0	0	logfile
✔	6EU1	3956	2022-07-07	2017-10-27	3.4	3.40	—	6.6	0.005	1.13	0.0	0.06	12.93	0.01	1.732	6.56	0.50	16.1	83.5	0.4	-5.70	0.20	0.01	0.29	3.3	0.013	1.36	3.0	0.05	16.40	0.01	1.726	25.40	0.21	17.8	81.9	0.3	-4.08	2.02	0.48	0.41	0.16	40547	5012	24	43	7	0	0	logfile
✔	7BHQ	12190	2022-07-03	2021-01-11	3.2	1.77	3.76	2.6	0.003	0.50	0.0	0.04	14.12	0.00	2.168	13.46	0.00	3.0	97.0	0.0	1.03	0.20	0.46	0.97	2.1	0.020	1.62	1.0	0.05	16.56	0.00	1.850	17.30	0.24	3.6	96.4	0.0	0.60	0.82	0.21	0.52	1.38	7402	1010	5	0	0	0	0	logfile
✔	3JBS	6478	2022-07-02	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.004	0.63	0.0	0.04	18.27	0.00	2.222	7.93	3.29	1.7	98.3	0.0	0.83	1.30	0.22	0.81	3.95	1401	175	1	0	0	0	0	logfile
✘	6Z3T	11064	2022-07-03	2020-05-21	2.69	3.99	3.36	3.9	0.007	1.08	1.0	0.06	16.04	0.01	1.240	6.72	1.60	9.6	90.2	0.2	-5.84	0.21	0.59	1.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3608	441	4	0	21	0	0	logfile
✔	6REU	4857	2022-07-06	2019-04-12	4.2	4.32	4.74	30.0	0.006	0.99	0.0	0.06	15.07	0.01	1.681	9.47	0.42	5.7	94.1	0.1	-4.88	0.21	0.03	—	30.0	0.009	1.01	1.0	0.05	14.11	0.01	1.882	22.18	0.03	7.6	92.3	0.1	-2.44	1.06	0.27	0.19	—	33899	4503	25	0	10	0	0	logfile
✘	5GAK	3227	2022-07-05	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.06	20.84	0.01	0.816	23.97	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	128975	6434	50	3597	234	0	0	logfile
✔	5MPD	3534	2022-07-07	2016-12-16	4.1	4.14	—	4.1	0.035	3.40	330.0	0.20	17.76	0.03	0.656	3.85	2.78	5.6	92.3	2.1	-2.14	0.21	0.37	—	4.1	0.010	1.18	2.0	0.05	15.58	0.01	1.051	28.38	0.00	7.6	92.2	0.3	-1.78	1.92	0.28	0.63	—	40974	5142	13	0	0	0	0	logfile
✘	3JAU	6366	2022-07-04	2015-06-24	4.8	4.76	—	5.7	0.027	2.66	660.0	0.16	14.74	0.02	1.686	11.51	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	114900	14700	180	0	0	0	0	logfile
✔	6T59	10380	2022-07-07	2019-10-15	3.11	3.19	3.02	7.3	0.011	0.83	0.0	0.05	17.10	0.00	1.148	10.88	0.76	8.9	91.0	0.1	-5.04	0.22	0.01	0.07	3.1	0.006	1.03	4.0	0.05	19.37	0.01	0.984	28.80	0.63	9.2	90.7	0.1	-2.66	1.99	0.57	0.55	0.42	143047	7383	64	3890	225	0	0	logfile
✔	6RJU	4906	2022-07-02	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	7FG3	31577	2022-07-03	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.34	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.009	0.98	0.0	0.05	16.79	0.01	2.094	24.09	0.30	15.7	83.7	0.6	-3.71	0.78	0.23	0.45	0.29	9054	1166	2	0	0	0	0	logfile
✔	3JC2	3245	2022-07-03	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.017	1.85	1.0	0.04	17.47	0.01	2.061	19.15	0.00	7.9	91.3	0.9	-1.89	2.29	0.24	0.53	1.41	3911	482	4	0	32	0	0	logfile
✘	7BC5	12139	2022-07-02	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1200	161	1	0	0	0	0	logfile
✔	7KU5	23034	2022-07-02	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.038	3.67	0.0	0.08	18.32	0.01	2.079	18.87	0.00	11.6	88.4	0.0	-1.92	1.16	0.25	0.69	2.46	750	88	1	0	4	0	0	logfile
✔	6EU3	3958	2022-07-07	2017-10-27	3.3	3.38	—	6.0	0.004	1.06	0.0	0.06	11.41	0.01	1.167	5.10	0.26	12.9	86.6	0.5	-5.18	0.23	0.03	0.17	3.3	0.014	1.36	4.0	0.05	15.60	0.01	1.547	24.09	0.12	14.8	84.8	0.4	-3.48	1.55	0.57	0.53	0.71	38330	4825	22	0	7	0	0	logfile

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