Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6FU8	4319	2021-06-01	2018-02-26	3.2	4.42	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.74	0.0	0.04	15.61	0.00	2.157	15.40	0.00	10.0	88.8	1.2	-2.23	3.26	0.24	0.67	2.23	1364	82	1	0	0	0	711	logfile
✔	7ASK	11895	2021-06-02	2020-10-27	4.3	4.39	—	4.3	0.028	2.99	47.0	0.22	18.83	0.02	0.766	14.44	2.58	16.8	73.6	9.7	-6.07	0.17	0.51	—	4.3	0.015	1.17	2.0	0.05	15.48	0.01	2.032	18.82	0.00	17.4	80.8	1.7	-3.46	2.19	0.19	0.61	—	12285	1523	1	0	2	0	0	logfile
✔	6Qi8	4552	2021-06-02	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.003	0.81	0.0	0.04	17.45	0.00	2.201	11.52	0.06	5.0	95.0	0.0	-1.61	1.62	0.31	0.21	0.00	14789	1907	12	0	6	0	0	logfile
✔	5A8L	3099	2021-06-02	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	8.77	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.007	1.00	0.0	0.05	18.32	0.01	2.008	23.69	2.09	12.9	86.3	0.8	-2.58	1.97	0.23	0.63	0.47	12264	624	9	347	0	0	0	logfile
✔	6Z5U	11082	2021-06-02	2020-05-27	3.9	4.52	—	38.0	0.021	1.87	10.0	0.11	12.07	0.01	0.901	4.64	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.5	0.004	0.93	0.0	0.05	14.73	0.01	2.038	19.33	0.36	5.9	94.1	0.0	-0.54	1.76	0.31	0.22	0.92	17880	2334	14	0	4	0	0	logfile
✔	6VoC	21260	2021-06-03	2020-01-30	3.1	3.49	—	20.0	0.006	0.90	0.0	0.06	8.74	0.01	0.163	459.01	0.00	1.9	98.1	0.0	-1.94	0.19	0.06	0.07	3.1	0.024	3.10	614.0	0.16	21.31	0.02	1.378	213.55	1.94	28.7	67.7	3.6	-5.88	7.31	0.26	0.13	0.01	214200	28560	180	0	0	0	0	logfile
✔	5TC1	8397	2021-06-02	2016-09-13	3.6	3.60	—	3.6	0.006	0.87	0.0	0.08	18.34	0.01	1.126	33.79	0.27	3.3	96.7	0.0	-3.80	0.19	0.77	4.30	3.6	0.004	0.61	0.0	0.04	17.00	0.00	2.147	7.57	1.16	4.8	95.2	0.0	-0.44	0.74	0.20	0.84	2.88	15393	1352	10	242	0	0	0	logfile
✔	7BHQ	12190	2021-06-02	2021-01-11	3.2	1.77	3.76	2.6	0.003	0.50	0.0	0.04	14.12	0.00	2.168	13.33	0.00	3.0	97.0	0.0	1.03	0.20	0.47	0.97	2.2	0.004	0.69	0.0	0.04	16.55	0.01	2.097	17.30	0.49	4.0	96.0	0.0	0.46	0.92	0.20	0.45	1.01	7402	1010	5	0	0	0	0	logfile
✔	6EU1	3956	2021-06-04	2017-10-27	3.4	3.40	—	6.6	0.005	1.14	0.0	0.06	12.93	0.01	1.732	6.51	0.50	16.1	83.5	0.4	-5.70	0.20	0.01	0.29	3.4	0.005	0.97	0.0	0.05	16.90	0.01	2.081	14.94	0.48	14.5	85.3	0.2	-3.42	2.07	0.71	0.73	0.92	40547	5012	24	43	7	0	0	logfile
✔	6Z3T	11064	2021-06-01	2020-05-21	2.69	3.99	3.36	3.9	0.010	1.85	1.0	0.07	17.42	0.01	2.284	6.58	1.60	9.6	90.2	0.2	-5.84	0.21	0.59	1.55	3.9	0.003	1.09	0.0	0.04	18.48	0.00	2.287	10.42	2.41	7.9	92.1	0.0	-1.19	0.93	0.21	0.64	1.75	3608	441	4	0	21	0	0	logfile
✔	6REU	4857	2021-06-04	2019-04-12	4.2	4.32	4.74	30.0	0.006	0.99	0.0	0.06	15.07	0.01	1.681	9.40	0.42	5.7	94.1	0.1	-4.88	0.21	0.03	—	30.0	0.004	0.80	0.0	0.05	13.89	0.01	1.976	19.27	0.00	7.1	92.8	0.1	-1.97	2.26	0.27	0.21	—	33899	4503	25	0	10	0	0	logfile
✔	3JAU	6366	2021-06-05	2015-06-24	4.8	4.76	—	5.7	0.027	2.65	660.0	0.16	14.74	0.02	1.686	11.04	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.002	0.68	0.0	0.04	14.19	0.00	2.172	15.65	0.00	3.3	96.2	0.4	-0.13	1.45	0.21	0.38	—	114900	14700	180	0	0	0	0	logfile
✔	5GAK	3227	2021-06-05	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.07	20.85	0.01	0.816	23.80	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	4.0	0.004	0.94	0.0	0.05	20.72	0.01	1.968	28.60	0.40	11.3	88.3	0.4	-3.21	2.47	0.36	0.30	0.01	128975	6434	50	3597	234	0	0	logfile
✔	3JBS	6478	2021-06-01	2015-10-13	2.9	3.04	—	3.2	0.010	1.35	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.1	0.003	0.62	0.0	0.04	18.60	0.00	2.365	7.24	1.32	1.7	98.3	0.0	0.92	1.83	0.22	0.80	3.26	1401	175	1	0	0	0	0	logfile
✔	5MPD	3534	2021-06-04	2016-12-16	4.1	4.14	—	4.1	0.035	3.40	330.0	0.20	17.76	0.03	0.656	3.67	2.78	5.6	92.3	2.1	-2.14	0.21	0.37	—	4.1	0.004	0.81	0.0	0.04	15.48	0.00	2.083	16.44	0.02	5.7	94.1	0.2	-0.48	1.94	0.27	0.59	—	40974	5142	13	0	0	0	0	logfile
✔	6T59	10380	2021-06-02	2019-10-15	3.11	3.19	3.02	7.3	0.011	0.83	0.0	0.05	17.10	0.00	1.148	10.72	0.76	8.9	91.0	0.1	-5.04	0.22	0.01	0.07	3.1	0.004	0.77	0.0	0.04	19.04	0.01	1.081	20.63	0.57	7.7	92.3	0.0	-2.29	2.32	0.65	0.67	1.02	143047	7383	64	3890	225	0	0	logfile
✔	3JC2	3245	2021-06-01	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	17.88	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.007	1.00	0.0	0.04	17.15	0.01	2.128	14.08	0.24	7.2	91.9	0.9	-1.24	2.40	0.24	0.54	1.86	3911	482	4	0	32	0	0	logfile
✔	6RJU	4906	2021-06-01	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.2	0.003	0.67	0.0	0.03	16.11	0.00	2.231	7.54	0.00	7.8	92.2	0.0	-1.37	1.76	0.29	0.06	-2.78	1992	131	1	0	0	0	997	logfile
✔	7BC5	12139	2021-06-01	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.005	0.91	0.0	0.05	17.28	0.01	2.235	19.36	1.53	11.3	88.7	0.0	-3.53	1.29	0.24	0.60	0.92	1200	161	1	0	0	0	0	logfile
✔	6EU3	3958	2021-06-04	2017-10-27	3.3	3.38	—	6.0	0.004	1.07	0.0	0.06	11.41	0.01	1.167	5.01	0.26	12.9	86.6	0.5	-5.18	0.23	0.03	0.17	3.3	0.005	0.90	0.0	0.05	16.35	0.01	1.906	13.38	0.49	12.4	87.3	0.3	-2.67	1.83	0.72	0.76	1.47	38330	4825	22	0	7	0	0	logfile

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