Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YKS	33896	2023-11-17	2022-07-23	3.0	3.20	3.06	4.7	0.008	1.00	0.0	0.06	10.27	0.01	2.291	4.01	0.00	6.7	93.1	0.2	-6.58	0.17	0.11	-0.18	3.2	0.003	0.77	0.0	0.04	16.58	0.00	2.059	8.61	1.28	4.7	95.3	0.0	-0.45	2.19	0.59	0.80	1.54	18984	2364	4	0	0	0	0	logfile
✔	7CHH	30374	2023-11-20	2020-07-05	3.49	2.44	—	20.0	0.007	1.10	0.0	0.06	15.16	0.01	2.182	4.90	3.56	5.2	94.7	0.1	-2.03	0.17	0.02	0.23	2.2	0.012	1.23	0.0	0.06	16.28	0.01	1.926	22.20	0.55	8.8	91.2	0.0	-2.20	1.50	0.21	0.15	0.35	29029	3704	17	0	41	0	0	logfile
✔	5A8L	3099	2023-11-15	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	8.96	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.007	1.04	0.0	0.05	18.05	0.01	1.970	24.69	1.52	12.2	86.5	1.3	-3.20	1.88	0.23	0.63	0.56	12264	624	9	347	0	0	0	logfile
✔	6Z5U	11082	2023-11-17	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	11.91	0.01	0.901	4.89	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.1	0.003	0.71	0.0	0.04	14.35	0.00	2.124	12.51	0.36	5.1	94.9	0.0	-0.25	1.55	0.28	0.16	0.60	17880	2334	14	0	4	0	0	logfile
✘	8EAo	27792	2023-11-18	2022-08-29	3.2	4.04	3.15	20.0	0.003	0.60	0.0	0.05	14.09	0.00	2.197	10.56	0.10	3.6	96.4	0.0	1.03	0.18	0.04	-0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71628	8964	24	0	0	0	0	logfile
✔	5TC1	8397	2023-11-16	2016-09-13	3.6	3.60	—	3.6	0.006	0.87	0.0	0.08	18.34	0.01	1.126	33.79	0.27	3.3	96.7	0.0	-3.80	0.19	0.77	4.30	3.6	0.005	0.65	0.0	0.04	17.03	0.00	2.127	7.15	0.89	5.0	95.0	0.0	-0.69	0.70	0.21	0.84	2.96	15393	1352	10	242	0	0	0	logfile
✔	8B6Z	15893	2023-11-13	2022-09-27	2.9	3.26	3.37	2.8	0.002	0.51	0.0	0.04	10.48	0.00	2.286	0.59	0.27	1.4	98.6	0.0	-0.69	0.20	0.56	1.62	2.8	0.003	0.68	0.0	0.04	14.19	0.01	2.185	6.95	0.54	3.4	96.6	0.0	-0.19	1.47	0.23	0.76	1.75	3581	442	2	8	0	0	0	logfile
✔	8ACC	15346	2023-11-13	2022-07-05	2.9	3.30	2.80	3.3	0.002	0.70	0.0	0.05	12.05	0.00	2.200	6.25	0.00	11.4	86.5	2.2	-2.46	0.20	0.81	4.38	3.3	0.003	0.63	0.0	0.04	16.85	0.00	2.244	8.63	4.61	12.7	86.5	0.9	-1.63	0.68	0.20	0.83	3.15	1779	231	2	5	0	0	0	logfile
✔	3JBS	6478	2023-11-13	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.61	0.0	0.04	18.11	0.00	2.225	5.17	3.95	1.7	98.3	0.0	0.99	1.75	0.21	0.81	3.63	1401	175	1	0	0	0	0	logfile
✔	3JAU	6366	2023-11-15	2015-06-24	4.8	4.76	—	6.0	0.027	2.66	660.0	0.16	14.74	0.02	1.686	10.72	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.003	0.70	0.0	0.04	13.62	0.00	2.034	12.63	0.00	4.6	95.0	0.4	-1.07	1.45	0.24	0.57	—	114900	14700	180	0	0	0	0	logfile
✔	7X34	32978	2023-11-13	2022-02-27	3.1	5.47	3.73	3.1	0.009	1.17	0.0	0.05	18.59	0.01	2.316	5.71	0.00	3.1	96.9	0.0	-2.86	0.21	0.78	1.18	3.1	0.005	0.80	0.0	0.04	19.79	0.00	2.090	34.91	0.00	5.1	94.9	0.0	0.18	0.55	0.21	0.77	1.18	2762	100	2	94	0	0	0	logfile
✔	5GAK	3227	2023-11-18	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.06	20.85	0.01	0.816	23.89	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	4.0	0.003	0.83	0.0	0.04	19.62	0.01	1.977	24.30	0.53	9.4	90.1	0.4	-2.72	1.99	0.33	0.25	0.07	128975	6434	50	3597	234	0	0	logfile
✔	6Z3T	11064	2023-11-13	2020-05-21	2.69	3.99	3.36	3.9	0.010	1.90	1.0	0.07	19.16	0.01	2.284	6.72	1.60	9.6	90.2	0.2	-5.84	0.21	0.59	1.55	3.9	0.004	1.12	0.0	0.04	20.40	0.00	2.242	13.44	2.67	7.5	92.5	0.0	-1.69	0.95	0.21	0.65	0.67	3608	441	4	0	21	0	0	logfile
✔	7TMC	25995	2023-11-13	2022-01-19	3.25	3.24	2.95	4.2	0.005	0.72	0.0	0.07	14.28	0.01	2.152	13.78	0.00	9.5	90.5	0.0	-4.08	0.21	0.31	-0.39	3.4	0.005	0.89	0.0	0.07	17.14	0.01	2.144	18.47	0.53	12.0	88.0	0.0	-4.18	1.94	0.36	0.76	3.09	3426	405	6	0	12	0	0	logfile
✔	8Q8C	18250	2023-11-14	2023-08-18	1.92	1.98	1.90	2.0	0.011	1.66	0.0	0.08	10.69	0.01	2.505	0.00	0.27	1.2	98.8	0.0	-1.44	0.21	0.65	7.52	1.9	0.003	0.56	0.0	0.05	16.18	0.00	2.145	1.81	0.27	1.4	98.6	0.0	-1.06	1.98	0.39	0.90	7.60	6618	429	6	0	0	0	3372	logfile
✔	6REU	4857	2023-11-21	2019-04-12	4.2	4.32	4.74	30.0	0.006	0.99	0.0	0.06	15.07	0.01	1.681	9.40	0.42	5.7	94.1	0.1	-4.88	0.21	0.03	—	30.0	0.004	0.83	0.0	0.05	14.03	0.01	1.829	21.34	0.06	6.8	93.0	0.1	-1.87	1.53	0.26	0.19	—	33899	4503	25	0	10	0	0	logfile
✔	8ACB	15345	2023-11-13	2022-07-05	2.6	2.88	1.65	2.9	0.004	0.71	0.0	0.08	13.94	0.00	2.257	7.47	0.00	7.8	92.2	0.0	-0.81	0.21	0.81	4.10	2.9	0.002	0.55	0.0	0.04	17.52	0.00	2.192	6.89	1.70	7.8	92.2	0.0	-0.42	1.25	0.20	0.83	3.65	1815	220	2	5	0	0	0	logfile
✔	8Q27	18070	2023-11-14	2023-08-01	2.02	1.98	1.92	2.0	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.3	97.7	0.0	-1.63	0.21	0.69	8.02	2.0	0.002	0.54	0.0	0.05	17.00	0.00	2.208	1.57	0.51	2.5	97.5	0.0	-1.37	1.20	0.34	0.88	7.21	7002	453	6	0	0	0	3567	logfile
✔	7FG3	31577	2023-11-14	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.004	0.92	0.0	0.05	16.64	0.01	2.088	24.71	0.10	15.3	84.1	0.5	-3.68	0.78	0.23	0.45	0.35	9054	1166	2	0	0	0	0	logfile
✔	7W6P	32331	2023-11-14	2021-12-02	3.47	3.79	—	9.6	0.004	0.70	0.0	0.04	13.78	0.00	2.196	14.60	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	8.7	0.003	0.68	0.0	0.04	15.37	0.00	2.199	14.66	0.44	5.7	94.3	0.0	-0.83	1.94	0.31	0.25	0.54	8408	1083	5	0	1	0	0	logfile

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