Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CHH	30374	2022-12-16	2020-07-05	3.49	2.44	—	20.0	0.007	1.09	0.0	0.06	15.08	0.01	2.182	4.91	3.56	5.2	94.7	0.1	-2.03	0.17	0.02	0.23	2.4	0.004	0.81	0.0	0.05	15.98	0.01	1.997	16.76	0.26	7.0	93.0	0.0	-1.63	1.46	0.23	0.15	0.48	29029	3704	17	0	41	0	0	logfile
✔	6Qi8	4552	2022-12-13	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.30	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.004	0.95	0.0	0.05	17.69	0.00	2.099	19.02	0.32	8.5	91.5	0.0	-2.67	1.59	0.33	0.24	0.43	14789	1907	12	0	6	0	0	logfile
✘	8GWA	34307	2022-12-20	2022-09-16	2.9	3.13	3.01	7.0	0.017	1.77	0.0	0.16	16.93	0.02	1.107	14.98	0.00	5.7	94.2	0.2	-1.01	0.17	-0.02	0.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37660	4006	27	0	160	0	0	logfile
✔	7ASK	11895	2022-12-12	2020-10-27	4.3	4.39	—	4.3	0.028	2.98	47.0	0.22	18.83	0.02	0.766	14.33	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.021	1.32	2.0	0.05	15.46	0.01	2.042	17.93	0.00	18.5	80.0	1.5	-3.37	1.32	0.19	0.60	—	12285	1523	1	0	2	0	0	logfile
✔	6FU8	4319	2022-12-11	2018-02-26	3.2	4.43	2.97	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.82	0.0	0.04	14.91	0.00	2.261	15.40	0.00	10.0	88.8	1.2	-1.84	3.11	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	5A8L	3099	2022-12-12	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	9.01	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.006	0.97	0.0	0.05	17.64	0.01	1.991	23.78	0.57	11.9	87.0	1.1	-2.68	1.53	0.23	0.63	0.73	12264	624	9	347	0	0	0	logfile
✔	6Z5U	11082	2022-12-13	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	11.91	0.01	0.901	4.94	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.5	0.003	0.76	0.0	0.04	14.53	0.00	1.928	14.28	0.41	5.2	94.8	0.0	-0.62	1.59	0.29	0.18	0.56	17880	2334	14	0	4	0	0	logfile
✔	5TC1	8397	2022-12-13	2016-09-13	3.6	3.60	—	3.6	0.006	0.87	0.0	0.08	18.34	0.01	1.126	33.79	0.27	3.3	96.7	0.0	-3.80	0.19	0.77	4.30	3.6	0.004	0.60	0.0	0.04	17.02	0.00	2.198	6.88	0.54	4.7	95.3	0.0	-0.54	0.71	0.21	0.84	2.91	15393	1352	10	242	0	0	0	logfile
✔	6EU1	3956	2022-12-20	2017-10-27	3.4	3.40	—	6.6	0.005	1.13	0.0	0.06	12.93	0.01	1.732	6.56	0.50	16.1	83.5	0.4	-5.70	0.20	0.01	0.29	3.4	0.004	0.90	0.0	0.05	16.67	0.01	2.063	15.47	0.68	16.1	83.7	0.2	-3.44	2.55	0.64	0.64	0.72	40547	5012	24	43	7	0	0	logfile
✔	7BHQ	12190	2022-12-12	2021-01-11	3.2	1.77	3.76	2.6	0.003	0.50	0.0	0.04	14.12	0.00	2.168	13.46	0.00	3.0	97.0	0.0	1.03	0.20	0.46	0.97	1.9	0.003	0.63	0.0	0.04	16.58	0.00	2.076	15.42	0.37	3.0	97.0	0.0	0.69	0.84	0.21	0.50	1.17	7402	1010	5	0	0	0	0	logfile
✔	3JBS	6478	2022-12-11	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.1	0.003	0.63	0.0	0.04	17.65	0.00	2.262	7.24	1.97	1.7	98.3	0.0	1.01	1.32	0.21	0.80	3.18	1401	175	1	0	0	0	0	logfile
✔	6REU	4857	2022-12-18	2019-04-12	4.2	4.32	4.74	30.0	0.006	0.99	0.0	0.06	15.07	0.01	1.681	9.47	0.42	5.7	94.1	0.1	-4.88	0.21	0.03	—	30.0	0.003	0.77	0.0	0.05	13.96	0.00	1.871	17.84	0.00	6.1	93.8	0.1	-1.72	1.51	0.26	0.17	—	33899	4503	25	0	10	0	0	logfile
✔	7X34	32978	2022-12-11	2022-02-27	3.1	5.47	3.72	3.1	0.009	1.17	0.0	0.05	18.59	0.01	2.316	5.71	0.00	3.1	96.9	0.0	-2.86	0.21	0.78	1.18	3.2	0.004	0.76	0.0	0.04	19.73	0.00	2.145	31.83	0.00	5.1	94.9	0.0	0.07	0.60	0.21	0.75	1.18	2762	100	2	94	0	0	0	logfile
✔	6Z3T	11064	2022-12-11	2020-05-21	2.69	3.99	3.36	3.9	0.010	1.84	1.0	0.07	18.57	0.01	2.284	6.72	1.60	9.6	90.2	0.2	-5.84	0.21	0.59	1.55	3.9	0.003	1.12	0.0	0.04	19.79	0.00	2.256	13.72	2.14	7.7	92.3	0.0	-1.72	0.92	0.21	0.66	1.55	3608	441	4	0	21	0	0	logfile
✔	5MPD	3534	2022-12-21	2016-12-16	4.1	4.14	—	4.1	0.035	3.40	330.0	0.20	17.76	0.03	0.656	3.85	2.78	5.6	92.3	2.1	-2.14	0.21	0.37	—	4.1	0.004	0.79	0.0	0.04	15.38	0.00	2.021	16.92	0.04	5.6	94.2	0.2	-0.45	1.30	0.27	0.61	—	40974	5142	13	0	0	0	0	logfile
✔	7W6P	32331	2022-12-12	2021-12-02	3.47	3.79	—	9.6	0.004	0.69	0.0	0.04	13.77	0.00	2.196	14.90	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	9.2	0.002	0.63	0.0	0.04	15.18	0.00	2.193	12.74	0.22	4.7	95.3	0.0	-0.44	1.88	0.29	0.20	0.86	8408	1083	5	0	1	0	0	logfile
✔	7FG3	31577	2022-12-12	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.34	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.004	0.91	0.0	0.05	16.70	0.01	2.098	25.10	0.40	15.9	83.5	0.5	-3.58	0.78	0.23	0.45	-0.23	9054	1166	2	0	0	0	0	logfile
✔	6RJU	4906	2022-12-11	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	3JC2	3245	2022-12-11	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.003	0.81	0.0	0.04	17.10	0.00	2.171	13.19	0.24	6.6	92.8	0.6	-1.30	3.32	0.23	0.52	1.58	3911	482	4	0	32	0	0	logfile
✔	7BC5	12139	2022-12-11	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.002	0.69	0.0	0.04	16.82	0.00	2.275	14.00	0.76	6.9	93.1	0.0	-2.62	1.28	0.23	0.57	0.92	1200	161	1	0	0	0	0	logfile

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