Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CHH	30374	2021-10-06	2020-07-05	3.49	2.44	—	20.0	0.007	1.09	0.0	0.06	15.08	0.01	2.182	4.86	3.56	5.2	94.7	0.1	-2.03	0.17	0.02	0.23	2.3	0.010	1.13	3.0	0.05	16.32	0.01	1.997	18.13	0.06	6.9	93.0	0.1	-1.58	1.52	0.22	0.15	0.50	29029	3704	17	0	41	0	0	logfile
✔	7ASK	11895	2021-10-04	2020-10-27	4.3	4.39	—	4.3	0.028	2.98	47.0	0.22	18.83	0.02	0.766	14.44	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.021	1.33	2.0	0.05	15.43	0.01	2.033	18.82	0.00	17.6	81.0	1.4	-3.53	2.20	0.19	0.60	—	12285	1523	1	0	2	0	0	logfile
✔	6Qi8	4552	2021-10-04	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.012	1.37	1.0	0.05	17.83	0.00	1.722	18.41	0.06	6.9	93.1	0.0	-2.19	1.63	0.33	0.23	0.41	14789	1907	12	0	6	0	0	logfile
✔	5A8L	3099	2021-10-04	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	8.77	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.010	1.15	1.0	0.04	17.67	0.01	1.967	18.83	0.38	9.6	89.1	1.3	-2.56	1.91	0.23	0.62	0.31	12264	624	9	347	0	0	0	logfile
✔	6Z5U	11082	2021-10-04	2020-05-27	3.9	4.52	—	38.0	0.021	1.87	10.0	0.11	12.07	0.01	0.901	4.64	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.5	0.018	1.29	1.0	0.05	14.55	0.00	1.860	14.47	0.05	4.8	95.2	0.0	0.22	1.66	0.29	0.17	0.75	17880	2334	14	0	4	0	0	logfile
✔	5TC1	8397	2021-10-04	2016-09-13	3.6	3.60	—	3.6	0.006	0.87	0.0	0.08	18.34	0.01	1.126	33.79	0.27	3.3	96.7	0.0	-3.80	0.19	0.77	4.30	3.6	0.003	0.55	0.0	0.04	16.85	0.00	2.170	7.04	0.71	3.2	96.8	0.0	-0.28	0.72	0.20	0.83	2.72	15393	1352	10	242	0	0	0	logfile
✘	6VoC	21260	2021-10-11	2020-01-30	3.1	3.49	—	20.0	0.006	0.90	0.0	0.06	8.74	0.01	0.163	459.01	0.00	1.9	98.1	0.0	-1.94	0.19	0.06	0.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	214200	28560	180	0	0	0	0	logfile
✔	7BHQ	12190	2021-10-04	2021-01-11	3.2	1.77	3.76	2.6	0.003	0.50	0.0	0.04	14.12	0.00	2.168	13.33	0.00	3.0	97.0	0.0	1.03	0.20	0.47	0.97	2.8	0.020	1.52	1.0	0.04	16.41	0.00	2.039	15.28	0.00	2.9	97.1	0.0	1.07	0.85	0.20	0.46	1.42	7402	1010	5	0	0	0	0	logfile
✔	6EU1	3956	2021-10-07	2017-10-27	3.4	3.40	—	6.6	0.005	1.13	0.0	0.06	12.93	0.01	1.732	6.51	0.50	16.1	83.5	0.4	-5.70	0.20	0.01	0.29	3.4	0.011	1.11	3.0	0.05	16.55	0.01	1.776	18.74	0.23	14.5	85.3	0.2	-3.53	1.90	0.66	0.67	0.67	40547	5012	24	43	7	0	0	logfile
✔	3JAU	6366	2021-10-04	2015-06-24	4.8	4.76	—	5.7	0.027	2.66	660.0	0.16	14.74	0.02	1.686	11.04	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.003	0.68	0.0	0.04	13.94	0.00	2.138	11.87	0.00	4.4	95.1	0.4	-0.46	1.53	0.20	0.36	—	114900	14700	180	0	0	0	0	logfile
✔	5GAK	3227	2021-10-05	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.07	20.85	0.01	0.816	23.80	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	3.9	0.007	0.94	4.0	0.04	19.31	0.01	1.727	23.59	0.21	8.9	90.7	0.4	-2.53	1.90	0.33	0.23	-0.02	128975	6434	50	3597	234	0	0	logfile
✔	3JBS	6478	2021-10-03	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.1	0.003	0.63	0.0	0.04	18.15	0.00	2.245	8.61	2.63	2.3	97.7	0.0	1.26	1.36	0.21	0.80	3.51	1401	175	1	0	0	0	0	logfile
✔	6REU	4857	2021-10-06	2019-04-12	4.2	4.32	4.74	30.0	0.006	0.99	0.0	0.06	15.07	0.01	1.681	9.40	0.42	5.7	94.1	0.1	-4.88	0.21	0.03	—	30.0	0.006	0.90	0.0	0.04	14.02	0.00	1.892	19.56	0.03	4.9	94.9	0.1	-1.75	0.98	0.25	0.15	—	33899	4503	25	0	10	0	0	logfile
✔	6Z3T	11064	2021-10-03	2020-05-21	2.69	3.99	3.36	3.9	0.010	1.84	1.0	0.07	18.57	0.01	2.284	6.58	1.60	9.6	90.2	0.2	-5.84	0.21	0.59	1.55	3.9	0.004	1.14	0.0	0.04	19.66	0.00	2.224	13.17	2.94	8.4	91.6	0.0	-1.78	0.98	0.21	0.65	1.10	3608	441	4	0	21	0	0	logfile
✔	5MPD	3534	2021-10-07	2016-12-16	4.1	4.14	—	4.1	0.035	3.40	330.0	0.20	17.76	0.03	0.656	3.67	2.78	5.6	92.3	2.1	-2.14	0.21	0.37	—	4.1	0.005	0.84	0.0	0.04	15.33	0.00	2.085	14.71	0.04	5.4	94.4	0.2	-0.24	1.97	0.27	0.59	—	40974	5142	13	0	0	0	0	logfile
✔	6RJU	4906	2021-10-03	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.6	0.003	0.75	0.0	0.03	15.88	0.00	2.161	10.56	0.00	9.3	90.7	0.0	-1.56	1.74	0.30	0.08	-2.69	1992	131	1	0	0	0	997	logfile
✔	3JC2	3245	2021-10-03	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	17.88	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.025	2.04	2.0	0.05	17.89	0.01	2.149	14.84	0.24	6.8	92.6	0.6	-1.47	3.31	0.23	0.52	1.84	3911	482	4	0	32	0	0	logfile
✔	6T59	10380	2021-10-07	2019-10-15	3.11	3.19	3.02	7.3	0.011	0.83	0.0	0.05	17.10	0.00	1.148	10.72	0.76	8.9	91.0	0.1	-5.04	0.22	0.01	0.07	3.1	0.005	0.94	0.0	0.05	19.79	0.01	1.117	25.74	0.66	8.8	91.2	0.0	-2.79	2.30	0.65	0.67	0.97	143047	7383	64	3890	225	0	0	logfile
✔	7FG3	31577	2021-10-03	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	36.45	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.004	0.90	0.0	0.05	16.48	0.01	2.117	19.23	0.10	13.9	85.6	0.5	-3.12	0.98	0.23	0.45	0.16	9054	1166	2	0	0	0	0	logfile
✔	6EU3	3958	2021-10-07	2017-10-27	3.3	3.38	—	6.0	0.004	1.06	0.0	0.06	11.41	0.01	1.167	5.01	0.26	12.9	86.6	0.5	-5.18	0.23	0.03	0.17	3.3	0.010	1.14	2.0	0.05	15.88	0.01	2.019	13.51	0.49	12.4	87.4	0.3	-2.83	1.65	0.65	0.65	0.86	38330	4825	22	0	7	0	0	logfile

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