Table showing results for March 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VoC	21260	2021-03-30	2020-01-30	3.1	3.49	—	20.0	0.006	0.90	0.0	0.06	8.74	0.01	0.163	459.01	0.00	1.9	98.1	0.0	-1.94	0.19	0.06	0.07	3.2	0.022	3.00	477.0	0.15	17.67	0.02	1.347	192.36	0.03	29.8	67.1	3.0	-5.86	7.43	0.26	0.13	-0.09	214200	28560	180	0	0	0	0	logfile
✔	5TC1	8397	2021-03-21	2016-09-13	3.6	3.60	—	3.6	0.006	0.87	0.0	0.08	18.34	0.01	1.126	33.79	0.27	3.3	96.7	0.0	-3.80	0.19	0.77	4.30	3.6	0.003	0.54	0.0	0.04	15.82	0.00	2.151	7.15	0.09	3.2	96.8	0.0	-0.39	0.73	0.21	0.83	2.96	15393	1352	10	242	0	0	0	logfile
✔	6EU1	3956	2021-03-22	2017-10-27	3.4	3.40	—	6.6	0.005	1.14	0.0	0.06	12.93	0.01	1.732	6.51	0.50	16.1	83.5	0.4	-5.70	0.20	0.01	0.29	3.4	0.004	0.88	0.0	0.05	14.58	0.01	2.131	14.20	0.05	14.3	85.6	0.1	-3.17	2.07	0.66	0.65	1.41	40547	5012	24	43	7	0	0	logfile
✔	5GAK	3227	2021-03-23	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.07	20.85	0.01	0.816	23.80	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	4.0	0.006	1.21	0.0	0.06	20.98	0.01	1.828	38.64	0.02	13.2	86.3	0.5	-3.52	2.84	0.37	0.32	0.15	128975	6434	50	3597	234	0	0	logfile
✔	6REU	4857	2021-03-22	2019-04-12	4.2	4.32	4.74	30.0	0.006	0.99	0.0	0.06	15.07	0.01	1.681	9.40	0.42	5.7	94.1	0.1	-4.88	0.21	0.03	—	30.0	0.004	0.80	0.0	0.05	13.89	0.01	1.976	19.27	0.00	7.1	92.8	0.1	-1.97	2.26	0.26	0.21	—	33899	4503	25	0	10	0	0	logfile
✔	6Z3T	11064	2021-03-20	2020-05-21	2.69	3.99	3.36	3.9	0.010	1.85	1.0	0.07	17.42	0.01	2.284	6.58	1.60	9.6	90.2	0.2	-5.84	0.21	0.59	1.55	3.9	0.003	1.02	0.0	0.04	15.75	0.00	2.122	11.25	0.00	6.8	93.2	0.0	-1.92	1.34	0.19	0.61	1.83	3608	441	4	0	21	0	0	logfile
✔	3JBS	6478	2021-03-20	2015-10-13	2.9	3.04	—	3.2	0.010	1.35	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.002	0.60	0.0	0.04	11.16	0.00	2.355	3.45	0.00	2.3	97.7	0.0	0.96	1.73	0.21	0.78	3.56	1401	175	1	0	0	0	0	logfile
✔	3JAU	6366	2021-03-22	2015-06-24	4.8	4.76	—	5.7	0.027	2.65	660.0	0.16	14.74	0.02	1.686	11.04	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.002	0.68	0.0	0.04	14.19	0.00	2.172	15.65	0.00	3.3	96.2	0.4	-0.13	1.45	0.23	0.50	—	114900	14700	180	0	0	0	0	logfile
✔	5MPD	3534	2021-03-22	2016-12-16	4.1	4.14	—	4.1	0.035	3.40	330.0	0.20	17.76	0.03	0.656	3.67	2.78	5.6	92.3	2.1	-2.14	0.21	0.37	—	4.1	0.004	0.81	0.0	0.04	15.48	0.00	2.083	16.44	0.02	5.7	94.1	0.2	-0.48	1.94	0.26	0.54	—	40974	5142	13	0	0	0	0	logfile
✔	3JC2	3245	2021-03-20	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	17.88	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.003	0.77	0.0	0.04	13.65	0.00	2.062	10.91	0.00	7.7	91.7	0.6	-1.29	4.08	0.24	0.51	1.58	3911	482	4	0	32	0	0	logfile
✔	6RJU	4906	2021-03-20	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.9	0.003	0.64	0.0	0.03	13.79	0.00	2.399	3.52	0.00	7.0	93.0	0.0	-1.10	1.56	0.30	0.07	1.02	1992	131	1	0	0	0	997	logfile
✔	6T59	10380	2021-03-21	2019-10-15	3.11	3.19	3.02	7.3	0.011	0.83	0.0	0.05	17.10	0.00	1.148	10.72	0.76	8.9	91.0	0.1	-5.04	0.22	0.01	0.07	3.1	0.003	0.73	0.0	0.04	18.11	0.01	1.188	18.81	0.08	6.8	93.2	0.0	-2.25	2.33	0.62	0.62	1.11	143047	7383	64	3890	225	0	0	logfile
✔	6EU3	3958	2021-03-22	2017-10-27	3.3	3.38	—	6.0	0.004	1.07	0.0	0.06	11.41	0.01	1.167	5.01	0.26	12.9	86.6	0.5	-5.18	0.23	0.03	0.17	3.3	0.005	0.87	0.0	0.05	13.92	0.01	1.938	12.59	0.02	12.7	87.0	0.3	-2.63	2.61	0.70	0.71	1.83	38330	4825	22	0	7	0	0	logfile
✔	5FN1	3236	2021-03-23	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	11.47	0.00	0.877	52.86	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	4.0	0.005	0.79	0.0	0.04	14.47	0.01	1.878	17.83	0.10	12.3	86.7	1.0	-0.97	2.41	0.42	0.76	1.95	61308	3906	36	90	0	0	30078	logfile
✔	5Li4	4052	2021-03-21	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	92.06	2.94	14.2	78.7	7.1	-4.35	0.24	0.30	—	4.1	0.004	0.96	0.0	0.05	13.51	0.01	2.165	26.37	0.00	15.8	83.4	0.8	-3.29	4.64	0.34	0.57	—	20070	2562	6	0	0	0	0	logfile
✘	6RBE	4794	2021-03-28	2019-04-10	3.8	4.03	3.73	40.0	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.09	1.35	11.9	86.8	1.2	-4.17	0.25	0.03	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	6CFZ	7469	2021-03-29	2018-02-19	4.5	4.66	5.81	4.7	0.010	1.19	0.0	0.05	9.79	0.01	0.321	10.91	0.00	6.6	92.9	0.4	-0.45	0.25	0.19	—	4.5	0.007	0.81	0.0	0.04	11.85	0.01	1.616	25.76	0.00	10.5	89.4	0.2	2.76	1.89	0.30	0.32	—	204102	12937	170	0	0	0	102272	logfile
✔	6iAC	4435	2021-03-20	2018-11-26	3.9	4.05	—	4.0	0.009	1.31	0.0	0.07	12.35	0.01	2.250	5.01	1.10	12.0	87.9	0.2	-4.54	0.26	0.77	1.92	4.0	0.003	0.78	0.0	0.05	13.43	0.00	2.293	9.52	0.00	7.9	92.1	0.0	-0.43	1.01	0.26	0.75	1.18	8210	1057	11	0	0	0	0	logfile
✔	6VHL	21207	2021-03-20	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	13.68	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.8	0.004	0.76	0.0	0.04	13.82	0.00	2.125	7.46	0.00	10.0	90.0	0.0	-3.65	3.42	0.26	0.67	3.42	1190	158	4	0	0	0	0	logfile
✔	6X0U	21984	2021-03-20	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.42	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.002	0.62	0.0	0.04	15.36	0.00	2.169	6.06	0.00	2.9	97.1	0.0	0.89	0.85	0.27	0.76	2.25	3091	398	4	0	0	0	0	logfile

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