Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7BC5	12139	2022-04-04	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1200	161	1	0	0	0	0	logfile
✔	6EU3	3958	2022-04-08	2017-10-27	3.3	3.38	—	6.0	0.004	1.06	0.0	0.06	11.41	0.01	1.167	5.02	0.26	12.9	86.6	0.5	-5.18	0.23	0.03	0.17	3.3	0.014	1.36	4.0	0.05	15.60	0.01	1.547	23.93	0.12	14.8	84.8	0.4	-3.48	1.55	0.57	0.53	0.71	38330	4825	22	0	7	0	0	logfile
✘	7QWS	14193	2022-04-08	2022-01-25	3.4	3.09	—	7.2	0.002	0.46	0.0	0.03	14.64	0.00	2.011	9.43	1.65	3.7	96.3	0.0	0.47	0.23	0.02	-0.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	137913	7047	55	3769	126	0	0	logfile
✔	7LiV	23386	2022-04-09	2021-01-28	3.6	3.63	—	3.6	0.009	0.95	1.0	0.05	13.49	0.01	1.080	26.89	2.97	4.9	94.5	0.6	-3.03	0.24	0.49	0.16	3.6	0.008	0.97	1.0	0.05	17.47	0.01	2.078	14.76	1.00	5.8	94.1	0.1	-1.19	1.66	0.39	0.82	1.23	47058	5903	12	0	0	0	0	logfile
✔	5FN1	3236	2022-04-05	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	11.47	0.00	0.877	53.81	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	3.9	0.006	0.89	0.0	0.04	16.82	0.01	1.902	20.73	0.89	12.6	86.4	1.1	-1.11	2.11	0.41	0.74	1.07	61308	3906	36	90	0	0	30078	logfile
✔	5Li4	4052	2022-04-06	2016-07-14	4.2	5.13	—	4.0	0.053	3.06	114.0	0.34	14.44	0.02	0.111	93.15	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.4	0.004	1.02	0.0	0.05	13.71	0.01	2.118	26.65	0.00	14.0	85.0	1.0	-3.83	4.19	0.34	0.57	—	20070	2562	6	0	0	0	0	logfile
✘	6CFZ	7469	2022-04-16	2018-02-19	4.5	4.66	5.81	4.7	0.010	1.19	0.0	0.05	9.79	0.01	0.321	11.03	0.00	6.6	92.9	0.4	-0.45	0.25	0.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	204102	12937	170	0	0	0	102272	logfile
✘	6RBE	4794	2022-04-06	2019-04-10	3.8	4.03	3.73	40.0	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.09	1.35	11.9	86.8	1.2	-4.17	0.25	0.02	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	6X0U	21984	2022-04-04	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.003	0.71	0.0	0.03	17.78	0.01	2.197	6.38	0.58	3.7	96.3	0.0	1.26	0.82	0.27	0.78	2.36	3091	398	4	0	0	0	0	logfile
✔	7QL4	14063	2022-04-04	2021-12-19	3.2	3.36	2.99	3.5	0.011	1.86	0.0	0.10	12.28	0.01	2.511	0.28	0.00	8.3	91.7	0.0	-1.77	0.26	0.51	0.51	3.4	0.003	0.65	0.0	0.05	15.13	0.00	1.992	9.48	0.25	3.2	96.8	0.0	-1.81	2.12	0.31	0.74	3.45	7074	456	6	0	0	0	3606	logfile
✔	6VHL	21207	2022-04-04	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	14.51	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.7	0.004	0.78	0.0	0.04	16.88	0.01	2.268	9.54	0.00	11.3	88.7	0.0	-3.65	2.64	0.28	0.69	3.54	1190	158	4	0	0	0	0	logfile
✔	6i5A	4413	2022-04-04	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.54	0.0	0.04	16.64	0.00	2.349	2.93	4.44	2.0	98.0	0.0	2.46	1.23	0.30	0.88	4.22	1206	153	1	0	0	0	0	logfile
✔	6SXo	10344	2022-04-05	2019-09-26	3.3	3.36	—	3.3	0.009	1.35	0.0	0.07	16.45	0.01	2.142	5.99	1.16	4.7	95.3	0.0	-4.39	0.26	0.72	2.92	3.3	0.003	0.59	0.0	0.03	16.64	0.00	2.121	10.75	0.70	3.3	96.7	0.0	-1.07	0.68	0.26	0.73	2.06	14894	973	8	326	0	0	0	logfile
✘	7RMC	24560	2022-04-16	2021-07-27	3.5	3.50	—	3.6	0.013	2.05	44.0	0.15	17.28	0.02	2.304	1.80	1.65	4.6	95.1	0.4	-1.78	0.26	0.38	2.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	106824	6732	24	0	24	0	53244	logfile
✔	7U15	26278	2022-04-04	2022-02-19	3.0	3.14	—	3.3	0.006	1.18	0.0	0.12	17.37	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.003	0.74	0.0	0.11	17.44	0.00	1.928	11.58	3.17	16.8	83.2	0.0	-5.23	1.48	0.27	0.69	2.64	6684	405	6	0	12	0	3255	logfile
✔	6iAC	4435	2022-04-04	2018-11-26	3.9	4.05	—	4.0	0.009	1.31	0.0	0.07	12.35	0.01	2.250	5.01	1.10	12.0	87.9	0.2	-4.54	0.26	0.77	1.92	4.0	0.004	0.91	0.0	0.05	16.38	0.00	2.176	12.19	1.10	8.4	91.6	0.0	-0.57	1.03	0.26	0.76	1.25	8210	1057	11	0	0	0	0	logfile
✔	3KTT	5148	2022-04-04	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	1.9	0.006	1.32	0.0	0.06	17.22	0.01	2.001	37.19	1.22	10.2	88.6	1.2	-2.54	1.70	0.31	0.43	—	3855	513	1	0	0	0	0	logfile
✔	6M99	9050	2022-04-09	2018-08-23	3.4	3.37	—	3.3	0.007	0.97	0.0	0.06	10.05	0.01	2.186	6.85	0.38	5.8	94.2	0.0	-4.38	0.27	0.85	3.06	3.3	0.006	0.86	1.0	0.05	15.09	0.01	1.736	16.59	0.37	5.7	94.3	0.0	-0.69	0.71	0.28	0.87	2.46	101389	13152	14	0	2	0	0	logfile
✔	6EU2	3957	2022-04-08	2017-10-27	3.4	3.45	—	6.0	0.004	1.04	0.0	0.06	11.35	0.01	1.787	5.04	0.40	13.0	86.5	0.5	-5.22	0.27	0.04	0.18	3.4	0.011	1.17	3.0	0.05	15.41	0.01	1.507	18.88	0.26	11.6	88.1	0.3	-2.77	1.48	0.55	0.48	0.07	38329	4825	22	0	7	0	0	logfile
✔	6L4S	0833	2022-04-04	2019-10-21	3.37	3.47	—	4.0	0.014	1.36	0.0	0.09	10.28	0.01	2.408	7.28	0.00	5.7	94.3	0.0	-3.73	0.28	0.67	4.12	4.1	0.008	0.87	0.0	0.06	15.50	0.00	2.214	12.64	0.44	14.5	85.5	0.0	-3.63	3.12	0.35	0.75	2.16	2268	330	6	0	0	0	0	logfile

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