Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JBS	6478	2023-02-16	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.61	0.0	0.04	18.11	0.00	2.225	5.17	3.95	1.7	98.3	0.0	0.99	1.75	0.21	0.81	3.63	1401	175	1	0	0	0	0	logfile
✔	6RJU	4906	2023-02-16	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	9.8	0.003	0.63	0.0	0.03	15.97	0.00	2.424	6.03	0.00	6.2	93.8	0.0	-0.13	1.31	0.27	0.05	0.48	1992	131	1	0	0	0	997	logfile
✔	7FG3	31577	2023-02-18	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.23	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.004	0.92	0.0	0.05	16.64	0.01	2.088	24.71	0.10	15.3	84.1	0.5	-3.68	0.78	0.23	0.45	0.35	9054	1166	2	0	0	0	0	logfile
✔	3JC2	3245	2023-02-17	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.004	0.86	0.0	0.04	17.18	0.00	2.128	14.33	0.49	7.4	91.9	0.6	-1.41	3.32	0.24	0.53	1.66	3911	482	4	0	32	0	0	logfile
✔	7BC5	12139	2023-02-16	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.003	0.72	0.0	0.04	17.04	0.00	2.243	14.42	0.76	7.5	92.5	0.0	-2.75	1.30	0.23	0.58	0.92	1200	161	1	0	0	0	0	logfile
✔	5Li4	4052	2023-02-23	2016-07-14	4.2	5.13	—	4.0	0.053	3.06	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.4	0.004	1.03	0.0	0.05	13.74	0.01	2.093	29.26	0.00	14.4	84.4	1.2	-3.64	4.18	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	5FN1	3236	2023-02-23	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	11.47	0.00	0.877	53.81	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	3.9	0.005	0.87	0.0	0.04	16.79	0.01	1.856	24.08	1.08	13.3	85.7	1.0	-1.33	2.15	0.41	0.75	0.99	61308	3906	36	90	0	0	30078	logfile
✔	7CZ5	31824	2023-02-18	2020-09-07	2.6	2.14	—	14.0	0.004	0.69	0.0	0.05	13.25	0.00	2.186	6.27	0.00	3.3	96.7	0.0	-2.04	0.25	0.05	0.50	10.0	0.003	0.65	0.0	0.04	15.11	0.00	2.090	14.88	0.78	5.0	95.0	0.0	-0.37	0.85	0.33	0.18	0.67	8336	1046	11	0	3	3	0	logfile
✘	6RBE	4794	2023-02-28	2019-04-10	3.8	4.03	3.73	40.0	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.10	1.35	11.9	86.8	1.2	-4.17	0.25	0.02	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	8A1S	15086	2023-02-25	2022-06-02	4.0	3.83	3.95	37.0	0.008	0.74	0.0	0.05	10.01	0.00	1.988	10.18	0.97	3.9	96.0	0.2	-0.24	0.26	0.00	—	3.5	0.004	0.79	0.0	0.05	13.07	0.01	1.990	16.76	0.27	4.6	95.2	0.2	-1.37	1.67	0.33	0.21	—	67152	8528	32	0	32	0	0	logfile
✔	6X0U	21984	2023-02-17	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.002	0.69	0.0	0.04	17.79	0.00	2.197	7.98	0.29	3.2	96.8	0.0	1.27	0.82	0.27	0.79	2.52	3091	398	4	0	0	0	0	logfile
✔	6SXo	10344	2023-02-21	2019-09-26	3.3	3.36	—	3.3	0.009	1.35	0.0	0.07	16.45	0.01	2.142	5.99	1.16	4.7	95.3	0.0	-4.39	0.26	0.72	2.92	3.3	0.003	0.60	0.0	0.03	16.58	0.00	2.112	10.83	0.70	3.9	96.1	0.0	-1.17	0.66	0.26	0.77	1.97	14894	973	8	326	0	0	0	logfile
✔	6iAC	4435	2023-02-18	2018-11-26	3.9	4.05	—	4.0	0.009	1.31	0.0	0.07	12.35	0.01	2.250	5.01	1.10	12.0	87.9	0.2	-4.54	0.26	0.77	1.92	4.0	0.004	0.91	0.0	0.05	16.30	0.00	2.076	13.77	0.86	8.4	91.6	0.0	-0.67	1.03	0.26	0.76	1.34	8210	1057	11	0	0	0	0	logfile
✔	6VHL	21207	2023-02-16	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	14.51	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.8	0.003	0.76	0.0	0.04	16.24	0.00	2.321	8.71	0.00	8.7	91.3	0.0	-3.58	2.81	0.26	0.69	3.41	1190	158	4	0	0	0	0	logfile
✔	7QL4	14063	2023-02-18	2021-12-19	3.2	3.36	2.99	3.5	0.011	1.86	0.0	0.10	12.28	0.01	2.511	0.28	0.00	8.3	91.7	0.0	-1.77	0.26	0.51	0.51	3.4	0.003	0.61	0.0	0.05	14.84	0.00	2.063	8.06	0.25	2.3	97.7	0.0	-1.63	2.14	0.30	0.72	3.63	7074	456	6	0	0	0	3606	logfile
✔	7U15	26278	2023-02-18	2022-02-19	3.0	3.14	—	3.3	0.006	1.18	0.0	0.12	17.37	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.004	0.77	0.0	0.11	17.01	0.00	1.892	13.92	4.76	18.8	81.2	0.0	-5.30	1.49	0.28	0.71	2.28	6684	405	6	0	12	0	3255	logfile
✔	7ZKY	14771	2023-02-17	2022-04-13	2.56	2.64	—	2.8	0.013	2.00	0.0	0.10	15.17	0.01	2.509	1.92	0.00	1.9	98.1	0.0	-3.47	0.26	0.53	3.35	2.7	0.006	0.83	0.0	0.04	18.07	0.00	2.046	12.61	2.71	8.6	91.4	0.0	-3.83	1.76	0.51	0.85	4.81	5238	642	12	0	0	0	0	logfile
✔	3KTT	5148	2023-02-17	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.1	0.005	1.24	0.0	0.05	17.17	0.01	2.010	31.44	0.49	9.2	89.6	1.2	-2.49	2.03	0.31	0.42	—	3855	513	1	0	0	0	0	logfile
✔	8A06	15051	2023-02-16	2022-05-26	4.0	3.63	3.78	3.8	0.003	0.56	0.0	0.05	13.75	0.00	2.201	6.79	0.73	2.8	97.2	0.0	-0.86	0.27	0.78	—	3.7	0.004	0.65	0.0	0.05	17.25	0.00	2.290	6.79	0.00	4.8	95.2	0.0	-1.23	0.40	0.27	0.80	—	1185	147	1	0	0	0	0	logfile
✘	8AZS	15770	2023-02-18	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.55	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9036	1224	36	0	0	0	0	logfile

• ← previous
• Page 3 of 353
• next →