Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7BC5	12139	2021-08-07	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1200	161	1	0	0	0	0	logfile
✔	5FN1	3236	2021-08-09	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	11.47	0.00	0.877	52.86	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	3.9	0.004	0.80	0.0	0.04	17.28	0.01	1.886	18.71	1.12	11.8	87.2	1.0	-0.89	1.76	0.42	0.77	1.57	61308	3906	36	90	0	0	30078	logfile
✔	5Li4	4052	2021-08-09	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	92.06	2.94	14.2	78.7	7.1	-4.35	0.24	0.30	—	4.4	0.004	1.03	0.0	0.05	13.59	0.01	2.133	28.48	0.00	16.3	82.7	1.1	-3.80	4.67	0.34	0.57	—	20070	2562	6	0	0	0	0	logfile
✔	6CFZ	7469	2021-08-13	2018-02-19	4.5	4.66	5.81	4.7	0.010	1.19	0.0	0.05	9.79	0.01	0.321	10.91	0.00	6.6	92.9	0.4	-0.45	0.25	0.19	—	4.5	0.010	1.01	13.0	0.05	12.04	0.01	1.548	36.39	0.00	12.0	87.6	0.4	2.64	1.90	0.33	0.42	—	204102	12937	170	0	0	0	102272	logfile
✘	6RBE	4794	2021-08-10	2019-04-10	3.8	4.03	3.73	40.0	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.09	1.35	11.9	86.8	1.2	-4.17	0.25	0.03	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	6iAC	4435	2021-08-07	2018-11-26	3.9	4.05	—	4.0	0.009	1.31	0.0	0.07	12.35	0.01	2.250	5.01	1.10	12.0	87.9	0.2	-4.54	0.26	0.77	1.92	4.0	0.004	0.91	0.0	0.05	16.56	0.00	2.122	11.36	1.22	7.2	92.8	0.0	-0.18	1.11	0.26	0.75	0.95	8210	1057	11	0	0	0	0	logfile
✔	6SXo	10344	2021-08-08	2019-09-26	3.3	3.36	—	3.3	0.009	1.35	0.0	0.07	16.45	0.01	2.142	5.99	1.16	4.7	95.3	0.0	-4.39	0.26	0.72	2.92	3.3	0.002	0.58	0.0	0.03	16.68	0.00	2.130	10.38	0.70	3.6	96.4	0.0	-1.04	0.76	0.27	0.77	2.05	14894	973	8	326	0	0	0	logfile
✔	6VHL	21207	2021-08-07	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	13.68	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.8	0.004	0.82	0.0	0.04	16.84	0.01	2.277	9.12	1.49	9.3	90.7	0.0	-3.51	2.75	0.27	0.67	3.28	1190	158	4	0	0	0	0	logfile
✔	6i5A	4413	2021-08-07	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.57	0.0	0.04	16.09	0.00	2.335	3.77	1.48	1.3	98.7	0.0	2.26	1.22	0.30	0.87	4.44	1206	153	1	0	0	0	0	logfile
✔	6X0U	21984	2021-08-07	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.42	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.003	0.68	0.0	0.04	17.80	0.01	2.228	7.34	0.29	3.7	96.3	0.0	1.18	0.86	0.27	0.78	2.60	3091	398	4	0	0	0	0	logfile
✔	6EU2	3957	2021-08-11	2017-10-27	3.4	3.45	—	6.0	0.004	1.04	0.0	0.06	11.35	0.01	1.787	5.05	0.40	13.0	86.5	0.5	-5.22	0.27	0.05	0.18	3.4	0.012	1.24	3.0	0.05	15.46	0.01	1.672	19.23	0.23	13.3	86.4	0.3	-2.93	1.65	0.62	0.59	0.47	38329	4825	22	0	7	0	0	logfile
✔	3KTT	5148	2021-08-07	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	176.10	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.1	0.007	1.18	0.0	0.05	17.26	0.01	2.046	27.09	0.49	10.8	88.3	1.0	-2.28	1.90	0.31	0.43	—	3855	513	1	0	0	0	0	logfile
✔	6M99	9050	2021-08-13	2018-08-23	3.4	3.37	—	3.3	0.007	0.97	0.0	0.06	10.05	0.01	2.186	6.86	0.38	5.8	94.2	0.0	-4.38	0.27	0.84	3.06	3.3	0.005	0.80	0.0	0.05	15.20	0.01	2.089	14.03	0.84	5.6	94.4	0.0	-0.52	0.73	0.28	0.86	2.41	101389	13152	14	0	2	0	0	logfile
✔	6K32	9907	2021-08-09	2019-05-16	3.2	3.73	—	3.8	0.009	1.19	1.0	0.08	11.34	0.01	1.345	10.08	1.25	6.3	93.3	0.3	-4.88	0.28	0.72	1.49	3.7	0.005	0.78	0.0	0.05	16.52	0.01	1.316	12.56	0.71	5.7	94.2	0.1	-1.33	1.37	0.31	0.82	2.34	61364	7723	10	8	6	0	0	logfile
✔	7ABK	11698	2021-08-07	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.004	0.80	0.0	0.04	20.02	0.00	2.241	5.67	2.47	2.6	97.4	0.0	4.26	1.36	0.28	0.86	1.04	1574	196	1	0	0	0	0	logfile
✔	6CBE	7452	2021-08-27	2018-02-02	2.78	2.88	—	3.9	0.010	0.81	0.0	0.05	9.59	0.01	2.147	9.53	0.00	1.9	98.1	0.0	-2.06	0.28	0.26	0.12	2.9	0.009	0.77	0.0	0.05	16.79	0.01	2.055	13.15	3.19	3.4	96.5	0.1	-0.87	3.92	0.69	0.88	4.49	248520	31080	60	0	0	0	0	logfile
✔	5MPE	3535	2021-08-11	2016-12-16	4.5	4.55	—	4.5	0.034	3.32	297.0	0.19	17.16	0.03	1.158	3.85	2.25	5.2	92.6	2.2	-1.86	0.28	0.39	—	4.5	0.008	0.97	1.0	0.04	15.04	0.00	2.029	21.01	0.00	5.9	93.8	0.3	-0.73	2.51	0.36	0.67	—	40974	5142	13	0	0	0	0	logfile
✔	7oG6	12879	2021-08-07	2021-05-06	3.3	3.47	—	2.9	0.008	0.82	0.0	0.04	17.33	0.01	2.325	7.36	6.10	9.6	90.4	0.0	-4.47	0.28	0.82	2.77	2.9	0.003	0.61	0.0	0.04	16.34	0.00	2.253	7.36	0.00	6.1	93.9	0.0	-0.13	0.55	0.27	0.83	2.33	1602	199	2	5	0	0	0	logfile
✔	6L4S	0833	2021-08-07	2019-10-21	3.37	3.47	—	4.0	0.014	1.36	0.0	0.09	10.28	0.01	2.408	7.28	0.00	5.7	94.3	0.0	-3.73	0.28	0.67	4.12	4.1	0.003	0.69	0.0	0.05	14.80	0.00	2.302	12.00	0.00	4.7	95.3	0.0	-3.23	3.14	0.34	0.73	2.33	2268	330	6	0	0	0	0	logfile
✔	6H5i	0140	2021-08-08	2018-07-24	3.9	3.87	—	23.0	0.006	0.84	0.0	0.05	10.47	0.01	2.196	2.63	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.009	0.96	2.0	0.04	15.32	0.01	2.068	16.19	0.04	3.8	96.2	0.0	1.44	1.32	0.38	0.26	0.08	43900	5392	26	0	0	0	0	logfile

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