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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7BC5 | 12139 | 2022-04-04 | 2020-12-18 | 3.1 | 3.06 | 3.11 | 3.1 | 0.005 | 1.05 | 0.0 | 0.05 | 15.92 | 0.01 | 2.314 | 7.83 | 0.76 | 8.2 | 91.8 | 0.0 | -5.64 | 0.23 | 0.62 | 0.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1200 | 161 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6EU3 | 3958 | 2022-04-08 | 2017-10-27 | 3.3 | 3.38 | — | 6.0 | 0.004 | 1.06 | 0.0 | 0.06 | 11.41 | 0.01 | 1.167 | 5.02 | 0.26 | 12.9 | 86.6 | 0.5 | -5.18 | 0.23 | 0.03 | 0.17 | 3.3 | 0.014 | 1.36 | 4.0 | 0.05 | 15.60 | 0.01 | 1.547 | 23.93 | 0.12 | 14.8 | 84.8 | 0.4 | -3.48 | 1.55 | 0.57 | 0.53 | 0.71 | 38330 | 4825 | 22 | 0 | 7 | 0 | 0 | logfile |
✘ | 7QWS | 14193 | 2022-04-08 | 2022-01-25 | 3.4 | 3.09 | — | 7.2 | 0.002 | 0.46 | 0.0 | 0.03 | 14.64 | 0.00 | 2.011 | 9.43 | 1.65 | 3.7 | 96.3 | 0.0 | 0.47 | 0.23 | 0.02 | -0.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 137913 | 7047 | 55 | 3769 | 126 | 0 | 0 | logfile |
✔ | 7LiV | 23386 | 2022-04-09 | 2021-01-28 | 3.6 | 3.63 | — | 3.6 | 0.009 | 0.95 | 1.0 | 0.05 | 13.49 | 0.01 | 1.080 | 26.89 | 2.97 | 4.9 | 94.5 | 0.6 | -3.03 | 0.24 | 0.49 | 0.16 | 3.6 | 0.008 | 0.97 | 1.0 | 0.05 | 17.47 | 0.01 | 2.078 | 14.76 | 1.00 | 5.8 | 94.1 | 0.1 | -1.19 | 1.66 | 0.39 | 0.82 | 1.23 | 47058 | 5903 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FN1 | 3236 | 2022-04-05 | 2015-11-10 | 3.9 | 4.00 | — | 4.7 | 0.009 | 1.18 | 0.0 | 0.07 | 11.47 | 0.00 | 0.877 | 53.81 | 0.00 | 8.8 | 88.4 | 2.8 | -3.37 | 0.24 | 0.29 | 0.57 | 3.9 | 0.006 | 0.89 | 0.0 | 0.04 | 16.82 | 0.01 | 1.902 | 20.73 | 0.89 | 12.6 | 86.4 | 1.1 | -1.11 | 2.11 | 0.41 | 0.74 | 1.07 | 61308 | 3906 | 36 | 90 | 0 | 0 | 30078 | logfile |
✔ | 5Li4 | 4052 | 2022-04-06 | 2016-07-14 | 4.2 | 5.13 | — | 4.0 | 0.053 | 3.06 | 114.0 | 0.34 | 14.44 | 0.02 | 0.111 | 93.15 | 2.94 | 14.0 | 79.1 | 6.9 | -4.32 | 0.24 | 0.30 | — | 4.4 | 0.004 | 1.02 | 0.0 | 0.05 | 13.71 | 0.01 | 2.118 | 26.65 | 0.00 | 14.0 | 85.0 | 1.0 | -3.83 | 4.19 | 0.34 | 0.57 | — | 20070 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6CFZ | 7469 | 2022-04-16 | 2018-02-19 | 4.5 | 4.66 | 5.81 | 4.7 | 0.010 | 1.19 | 0.0 | 0.05 | 9.79 | 0.01 | 0.321 | 11.03 | 0.00 | 6.6 | 92.9 | 0.4 | -0.45 | 0.25 | 0.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 204102 | 12937 | 170 | 0 | 0 | 0 | 102272 | logfile |
✘ | 6RBE | 4794 | 2022-04-06 | 2019-04-10 | 3.8 | 4.03 | 3.73 | 40.0 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.09 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.25 | 0.02 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✔ | 6X0U | 21984 | 2022-04-04 | 2020-05-17 | 3.6 | 3.62 | — | 3.6 | 0.004 | 0.62 | 0.0 | 0.04 | 14.50 | 0.00 | 2.277 | 5.74 | 0.00 | 3.7 | 96.1 | 0.3 | -5.79 | 0.26 | 0.78 | 1.89 | 3.6 | 0.003 | 0.71 | 0.0 | 0.03 | 17.78 | 0.01 | 2.197 | 6.38 | 0.58 | 3.7 | 96.3 | 0.0 | 1.26 | 0.82 | 0.27 | 0.78 | 2.36 | 3091 | 398 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QL4 | 14063 | 2022-04-04 | 2021-12-19 | 3.2 | 3.36 | 2.99 | 3.5 | 0.011 | 1.86 | 0.0 | 0.10 | 12.28 | 0.01 | 2.511 | 0.28 | 0.00 | 8.3 | 91.7 | 0.0 | -1.77 | 0.26 | 0.51 | 0.51 | 3.4 | 0.003 | 0.65 | 0.0 | 0.05 | 15.13 | 0.00 | 1.992 | 9.48 | 0.25 | 3.2 | 96.8 | 0.0 | -1.81 | 2.12 | 0.31 | 0.74 | 3.45 | 7074 | 456 | 6 | 0 | 0 | 0 | 3606 | logfile |
✔ | 6VHL | 21207 | 2022-04-04 | 2020-01-10 | 3.3 | 3.60 | — | 3.5 | 0.007 | 1.03 | 0.0 | 0.07 | 15.85 | 0.01 | 1.791 | 14.51 | 4.48 | 14.7 | 85.3 | 0.0 | -6.30 | 0.26 | 0.70 | 3.54 | 3.7 | 0.004 | 0.78 | 0.0 | 0.04 | 16.88 | 0.01 | 2.268 | 9.54 | 0.00 | 11.3 | 88.7 | 0.0 | -3.65 | 2.64 | 0.28 | 0.69 | 3.54 | 1190 | 158 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6i5A | 4413 | 2022-04-04 | 2018-11-13 | 2.3 | 2.34 | 1.50 | 2.3 | 0.012 | 1.84 | 1.0 | 0.10 | 14.16 | 0.01 | 2.431 | 6.70 | 0.74 | 1.3 | 97.4 | 1.3 | -0.89 | 0.26 | 0.84 | 3.95 | 2.3 | 0.003 | 0.54 | 0.0 | 0.04 | 16.64 | 0.00 | 2.349 | 2.93 | 4.44 | 2.0 | 98.0 | 0.0 | 2.46 | 1.23 | 0.30 | 0.88 | 4.22 | 1206 | 153 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SXo | 10344 | 2022-04-05 | 2019-09-26 | 3.3 | 3.36 | — | 3.3 | 0.009 | 1.35 | 0.0 | 0.07 | 16.45 | 0.01 | 2.142 | 5.99 | 1.16 | 4.7 | 95.3 | 0.0 | -4.39 | 0.26 | 0.72 | 2.92 | 3.3 | 0.003 | 0.59 | 0.0 | 0.03 | 16.64 | 0.00 | 2.121 | 10.75 | 0.70 | 3.3 | 96.7 | 0.0 | -1.07 | 0.68 | 0.26 | 0.73 | 2.06 | 14894 | 973 | 8 | 326 | 0 | 0 | 0 | logfile |
✘ | 7RMC | 24560 | 2022-04-16 | 2021-07-27 | 3.5 | 3.50 | — | 3.6 | 0.013 | 2.05 | 44.0 | 0.15 | 17.28 | 0.02 | 2.304 | 1.80 | 1.65 | 4.6 | 95.1 | 0.4 | -1.78 | 0.26 | 0.38 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106824 | 6732 | 24 | 0 | 24 | 0 | 53244 | logfile |
✔ | 7U15 | 26278 | 2022-04-04 | 2022-02-19 | 3.0 | 3.14 | — | 3.3 | 0.006 | 1.18 | 0.0 | 0.12 | 17.37 | 0.01 | 1.886 | 12.16 | 3.44 | 3.8 | 96.2 | 0.0 | -6.51 | 0.26 | 0.64 | 1.55 | 3.2 | 0.003 | 0.74 | 0.0 | 0.11 | 17.44 | 0.00 | 1.928 | 11.58 | 3.17 | 16.8 | 83.2 | 0.0 | -5.23 | 1.48 | 0.27 | 0.69 | 2.64 | 6684 | 405 | 6 | 0 | 12 | 0 | 3255 | logfile |
✔ | 6iAC | 4435 | 2022-04-04 | 2018-11-26 | 3.9 | 4.05 | — | 4.0 | 0.009 | 1.31 | 0.0 | 0.07 | 12.35 | 0.01 | 2.250 | 5.01 | 1.10 | 12.0 | 87.9 | 0.2 | -4.54 | 0.26 | 0.77 | 1.92 | 4.0 | 0.004 | 0.91 | 0.0 | 0.05 | 16.38 | 0.00 | 2.176 | 12.19 | 1.10 | 8.4 | 91.6 | 0.0 | -0.57 | 1.03 | 0.26 | 0.76 | 1.25 | 8210 | 1057 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 3KTT | 5148 | 2022-04-04 | 2009-11-25 | 4.0 | 2.33 | — | 4.5 | 0.020 | 2.86 | 20.0 | 0.20 | 15.20 | 0.01 | 1.652 | 179.94 | 7.82 | 6.3 | 89.4 | 4.3 | -0.59 | 0.27 | 0.28 | — | 1.9 | 0.006 | 1.32 | 0.0 | 0.06 | 17.22 | 0.01 | 2.001 | 37.19 | 1.22 | 10.2 | 88.6 | 1.2 | -2.54 | 1.70 | 0.31 | 0.43 | — | 3855 | 513 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6M99 | 9050 | 2022-04-09 | 2018-08-23 | 3.4 | 3.37 | — | 3.3 | 0.007 | 0.97 | 0.0 | 0.06 | 10.05 | 0.01 | 2.186 | 6.85 | 0.38 | 5.8 | 94.2 | 0.0 | -4.38 | 0.27 | 0.85 | 3.06 | 3.3 | 0.006 | 0.86 | 1.0 | 0.05 | 15.09 | 0.01 | 1.736 | 16.59 | 0.37 | 5.7 | 94.3 | 0.0 | -0.69 | 0.71 | 0.28 | 0.87 | 2.46 | 101389 | 13152 | 14 | 0 | 2 | 0 | 0 | logfile |
✔ | 6EU2 | 3957 | 2022-04-08 | 2017-10-27 | 3.4 | 3.45 | — | 6.0 | 0.004 | 1.04 | 0.0 | 0.06 | 11.35 | 0.01 | 1.787 | 5.04 | 0.40 | 13.0 | 86.5 | 0.5 | -5.22 | 0.27 | 0.04 | 0.18 | 3.4 | 0.011 | 1.17 | 3.0 | 0.05 | 15.41 | 0.01 | 1.507 | 18.88 | 0.26 | 11.6 | 88.1 | 0.3 | -2.77 | 1.48 | 0.55 | 0.48 | 0.07 | 38329 | 4825 | 22 | 0 | 7 | 0 | 0 | logfile |
✔ | 6L4S | 0833 | 2022-04-04 | 2019-10-21 | 3.37 | 3.47 | — | 4.0 | 0.014 | 1.36 | 0.0 | 0.09 | 10.28 | 0.01 | 2.408 | 7.28 | 0.00 | 5.7 | 94.3 | 0.0 | -3.73 | 0.28 | 0.67 | 4.12 | 4.1 | 0.008 | 0.87 | 0.0 | 0.06 | 15.50 | 0.00 | 2.214 | 12.64 | 0.44 | 14.5 | 85.5 | 0.0 | -3.63 | 3.12 | 0.35 | 0.75 | 2.16 | 2268 | 330 | 6 | 0 | 0 | 0 | 0 | logfile |