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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8FVG | 29486 | 2024-03-25 | 2023-01-18 | 3.1 | 2.34 | 3.16 | 3.2 | 0.004 | 0.66 | 0.0 | 0.05 | 14.20 | 0.00 | 2.106 | 8.55 | 0.00 | 5.7 | 94.3 | 0.0 | -0.63 | 0.26 | 0.75 | 2.01 | 3.1 | 0.019 | 0.86 | 0.0 | 0.05 | 16.32 | 0.01 | 2.109 | 8.32 | 3.97 | 7.5 | 92.5 | 0.0 | -0.66 | 1.36 | 0.26 | 0.78 | 2.16 | 48009 | 6409 | 13 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RMC | 24560 | 2024-03-28 | 2021-07-27 | 3.5 | 3.50 | — | 3.6 | 0.013 | 2.05 | 44.0 | 0.15 | 17.28 | 0.02 | 2.304 | 1.80 | 1.65 | 4.6 | 95.1 | 0.4 | -1.78 | 0.26 | 0.38 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106824 | 6732 | 24 | 0 | 24 | 0 | 53244 | logfile |
✔ | 7U15 | 26278 | 2024-03-11 | 2022-02-19 | 3.0 | 3.14 | — | 3.3 | 0.006 | 1.22 | 0.0 | 0.12 | 17.23 | 0.01 | 1.886 | 12.16 | 3.44 | 3.8 | 96.2 | 0.0 | -6.51 | 0.26 | 0.64 | 1.55 | 3.2 | 0.003 | 0.75 | 0.0 | 0.11 | 15.95 | 0.00 | 1.960 | 11.72 | 4.50 | 18.0 | 82.0 | 0.0 | -5.23 | 1.45 | 0.27 | 0.70 | 3.20 | 6684 | 405 | 6 | 0 | 12 | 0 | 3255 | logfile |
✔ | 8Q8Y | 18265 | 2024-03-11 | 2023-08-19 | 2.88 | 2.50 | 2.59 | 2.7 | 0.011 | 1.89 | 4.0 | 0.11 | 12.93 | 0.01 | 2.516 | 0.00 | 0.00 | 2.3 | 97.7 | 0.0 | -1.68 | 0.26 | 0.75 | 5.62 | 2.7 | 0.002 | 0.53 | 0.0 | 0.05 | 17.29 | 0.00 | 2.053 | 2.18 | 1.55 | 1.9 | 98.1 | 0.0 | -1.41 | 1.19 | 0.35 | 0.88 | 5.17 | 6896 | 441 | 6 | 0 | 0 | 0 | 3521 | logfile |
✔ | 6VHL | 21207 | 2024-03-10 | 2020-01-10 | 3.3 | 3.60 | — | 3.5 | 0.007 | 1.03 | 0.0 | 0.07 | 15.85 | 0.01 | 1.791 | 14.51 | 4.48 | 14.7 | 85.3 | 0.0 | -6.30 | 0.26 | 0.70 | 3.54 | 3.6 | 0.003 | 0.71 | 0.0 | 0.04 | 16.46 | 0.00 | 2.331 | 5.80 | 2.99 | 6.7 | 93.3 | 0.0 | -3.62 | 2.72 | 0.27 | 0.70 | 3.42 | 1190 | 158 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iAC | 4435 | 2024-03-11 | 2018-11-26 | 3.9 | 4.05 | — | 4.0 | 0.009 | 1.31 | 0.0 | 0.07 | 12.35 | 0.01 | 2.250 | 5.01 | 1.10 | 12.0 | 87.9 | 0.2 | -4.54 | 0.26 | 0.77 | 1.92 | 4.0 | 0.003 | 0.86 | 0.0 | 0.05 | 16.10 | 0.00 | 2.189 | 11.74 | 5.26 | 7.8 | 92.2 | 0.0 | -0.28 | 0.91 | 0.26 | 0.76 | 1.16 | 8210 | 1057 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 8Q7T | 18233 | 2024-03-14 | 2023-08-17 | 3.0 | 2.38 | 2.99 | 3.1 | 0.011 | 1.80 | 0.0 | 0.09 | 12.35 | 0.01 | 2.480 | 0.10 | 0.18 | 2.4 | 97.6 | 0.0 | -1.65 | 0.27 | 0.65 | 4.83 | 2.9 | 0.005 | 0.63 | 0.0 | 0.05 | 16.61 | 0.00 | 2.043 | 6.25 | 2.29 | 2.7 | 97.3 | 0.0 | -1.53 | 1.22 | 0.34 | 0.83 | 4.98 | 10083 | 654 | 9 | 0 | 0 | 0 | 5136 | logfile |
✔ | 8DFo | 27409 | 2024-03-19 | 2022-06-22 | 3.1 | 3.40 | 3.29 | 7.2 | 0.022 | 1.64 | 93.0 | 0.16 | 18.53 | 0.01 | 1.724 | 6.88 | 0.57 | 4.8 | 95.2 | 0.0 | -0.44 | 0.27 | 0.07 | 0.22 | 3.4 | 0.003 | 0.73 | 0.0 | 0.04 | 18.14 | 0.01 | 2.099 | 16.30 | 1.88 | 4.4 | 95.6 | 0.0 | -0.23 | 1.84 | 0.44 | 0.39 | 0.68 | 23861 | 2912 | 13 | 45 | 0 | 0 | 0 | logfile |
✘ | 8AZS | 15770 | 2024-03-14 | 2022-09-06 | 2.9 | 2.78 | 2.55 | 2.8 | 0.011 | 1.50 | 0.0 | 0.12 | 16.09 | 0.01 | 0.017 | 1346.55 | 0.00 | 3.1 | 96.9 | 0.0 | -1.98 | 0.27 | 0.40 | 5.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9036 | 1224 | 36 | 0 | 0 | 0 | 0 | logfile |
✔ | 3KTT | 5148 | 2024-03-10 | 2009-11-25 | 4.0 | 2.33 | — | 4.5 | 0.020 | 2.86 | 20.0 | 0.20 | 15.20 | 0.01 | 1.652 | 179.94 | 7.82 | 6.3 | 89.4 | 4.3 | -0.59 | 0.27 | 0.28 | — | 2.1 | 0.005 | 1.19 | 0.0 | 0.06 | 17.22 | 0.01 | 2.007 | 33.74 | 4.89 | 10.6 | 88.3 | 1.2 | -2.44 | 1.71 | 0.31 | 0.42 | — | 3855 | 513 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6EU2 | 3957 | 2024-03-23 | 2017-10-27 | 3.4 | 3.45 | — | 6.0 | 0.004 | 1.04 | 0.0 | 0.06 | 11.35 | 0.01 | 1.787 | 5.04 | 0.40 | 13.0 | 86.5 | 0.5 | -5.22 | 0.27 | 0.04 | 0.18 | 3.4 | 0.006 | 1.00 | 2.0 | 0.05 | 15.52 | 0.01 | 1.818 | 17.85 | 2.02 | 11.9 | 87.8 | 0.3 | -2.67 | 1.60 | 0.61 | 0.58 | 0.33 | 38329 | 4825 | 22 | 0 | 7 | 0 | 0 | logfile |
✔ | 8Q8X | 18264 | 2024-03-10 | 2023-08-19 | 2.54 | 2.40 | 2.39 | 2.5 | 0.011 | 1.74 | 0.0 | 0.08 | 11.92 | 0.01 | 2.517 | 0.00 | 1.27 | 2.5 | 97.5 | 0.0 | -1.63 | 0.27 | 0.77 | 6.72 | 2.4 | 0.005 | 0.65 | 0.0 | 0.05 | 16.11 | 0.00 | 2.244 | 3.57 | 1.53 | 2.3 | 97.7 | 0.0 | -1.95 | 0.91 | 0.37 | 0.91 | 6.88 | 3435 | 453 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YNL | 33965 | 2024-03-10 | 2022-07-31 | 2.6 | 2.16 | 2.41 | 3.2 | 0.009 | 2.40 | 0.0 | 0.06 | 16.15 | 0.05 | 2.128 | 26.40 | 0.00 | 8.9 | 91.1 | 0.0 | -6.11 | 0.27 | 0.35 | 2.03 | 3.3 | 0.004 | 0.95 | 0.0 | 0.05 | 17.95 | 0.00 | 2.132 | 13.07 | 5.62 | 10.5 | 89.5 | 0.0 | -4.17 | 3.16 | 0.40 | 0.63 | 2.60 | 4080 | 464 | 16 | 0 | 16 | 0 | 0 | logfile |
✔ | 8A06 | 15051 | 2024-03-10 | 2022-05-26 | 4.0 | 3.63 | 3.78 | 3.8 | 0.003 | 0.56 | 0.0 | 0.05 | 13.75 | 0.00 | 2.201 | 6.79 | 0.73 | 2.8 | 97.2 | 0.0 | -0.86 | 0.27 | 0.78 | — | 3.7 | 0.003 | 0.61 | 0.0 | 0.05 | 17.11 | 0.00 | 2.273 | 4.67 | 8.76 | 4.1 | 95.9 | 0.0 | -1.52 | 0.41 | 0.26 | 0.79 | — | 1185 | 147 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6M99 | 9050 | 2024-03-20 | 2018-08-23 | 3.4 | 3.37 | — | 3.3 | 0.007 | 0.97 | 0.0 | 0.06 | 10.05 | 0.01 | 2.186 | 6.88 | 0.38 | 5.8 | 94.2 | 0.0 | -4.38 | 0.27 | 0.85 | 3.06 | 3.3 | 0.004 | 0.73 | 0.0 | 0.05 | 15.04 | 0.00 | 2.019 | 13.36 | 4.59 | 5.4 | 94.6 | 0.0 | -0.44 | 0.69 | 0.28 | 0.87 | 2.44 | 101389 | 13152 | 14 | 0 | 2 | 0 | 0 | logfile |
✔ | 8D9N | 27267 | 2024-03-11 | 2022-06-10 | 4.4 | 4.74 | 3.88 | 34.0 | 0.003 | 0.60 | 0.0 | 0.04 | 13.21 | 0.00 | 2.107 | 2.77 | 0.38 | 5.8 | 94.2 | 0.0 | -0.81 | 0.28 | -0.07 | — | 20.0 | 0.002 | 0.66 | 0.0 | 0.04 | 13.37 | 0.00 | 2.199 | 4.56 | 0.00 | 5.3 | 94.7 | 0.0 | 0.51 | 0.56 | 0.36 | -0.05 | — | 7186 | 902 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UiU | 26553 | 2024-03-10 | 2022-03-29 | 2.8 | 3.11 | 2.72 | 3.1 | 0.004 | 0.62 | 0.0 | 0.04 | 13.60 | 0.00 | 2.356 | 3.35 | 0.00 | 4.8 | 95.2 | 0.0 | -2.09 | 0.28 | 0.82 | 1.99 | 3.3 | 0.004 | 0.96 | 0.0 | 0.04 | 16.77 | 0.00 | 2.227 | 11.74 | 3.33 | 6.0 | 94.0 | 0.0 | -2.10 | 1.37 | 0.28 | 0.89 | 2.72 | 607 | 85 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5MPE | 3535 | 2024-03-24 | 2016-12-16 | 4.5 | 4.55 | — | 4.5 | 0.034 | 3.32 | 297.0 | 0.19 | 17.16 | 0.03 | 1.158 | 3.96 | 2.25 | 5.2 | 92.6 | 2.2 | -1.86 | 0.28 | 0.39 | — | 4.5 | 0.003 | 0.81 | 0.0 | 0.04 | 14.85 | 0.00 | 2.037 | 19.65 | 0.09 | 5.9 | 93.8 | 0.3 | -0.74 | 2.46 | 0.35 | 0.67 | — | 40974 | 5142 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DWi | 27755 | 2024-03-10 | 2022-08-01 | 3.4 | 4.06 | 3.58 | 4.1 | 0.003 | 0.63 | 0.0 | 0.04 | 13.02 | 0.01 | 2.258 | 7.44 | 0.00 | 5.0 | 95.0 | 0.0 | 0.29 | 0.28 | 0.33 | -0.40 | 4.0 | 0.003 | 0.75 | 0.0 | 0.04 | 16.44 | 0.01 | 2.119 | 10.92 | 2.23 | 4.5 | 95.5 | 0.0 | -0.30 | 1.77 | 0.47 | 0.72 | 2.55 | 3192 | 424 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oG6 | 12879 | 2024-03-10 | 2021-05-06 | 3.3 | 3.47 | — | 2.9 | 0.008 | 0.82 | 0.0 | 0.04 | 18.38 | 0.01 | 2.325 | 7.36 | 6.10 | 9.6 | 90.4 | 0.0 | -4.47 | 0.28 | 0.82 | 2.77 | 2.9 | 0.003 | 0.62 | 0.0 | 0.04 | 17.37 | 0.00 | 2.176 | 10.24 | 2.44 | 6.6 | 93.4 | 0.0 | -0.62 | 0.54 | 0.27 | 0.84 | 2.90 | 1602 | 199 | 2 | 5 | 0 | 0 | 0 | logfile |