Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7U13	26276	2023-02-17	2022-02-19	2.9	3.67	—	4.2	0.017	2.41	0.0	0.07	17.78	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.005	0.96	0.0	0.06	18.45	0.00	2.194	14.61	3.67	12.3	87.7	0.0	-4.21	6.72	0.33	0.56	1.63	3456	405	6	0	12	0	0	logfile
✔	7RTN	24684	2023-02-17	2021-08-13	3.4	3.47	—	3.5	0.004	0.63	0.0	0.04	14.58	0.00	2.298	6.03	0.00	6.1	93.9	0.0	0.60	0.31	0.74	3.40	3.5	0.002	0.55	0.0	0.04	16.40	0.00	2.267	7.60	0.18	4.3	95.7	0.0	1.41	0.36	0.31	0.77	2.79	6018	810	3	0	0	0	0	logfile
✔	5VZL	8749	2023-02-21	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.002	0.66	0.0	0.04	15.70	0.00	1.245	12.48	0.50	5.0	95.0	0.0	-1.31	1.26	0.38	0.19	0.61	13915	1451	3	115	1	0	0	logfile
✔	6DLU	7957	2023-02-20	2018-06-02	3.75	3.84	—	3.8	0.009	0.94	0.0	0.05	9.95	0.00	1.944	12.48	0.23	5.7	94.3	0.0	-2.78	0.31	0.77	1.09	3.7	0.002	0.69	0.0	0.04	13.94	0.00	1.984	8.44	0.30	4.4	95.6	0.0	0.08	2.39	0.32	0.81	1.17	11991	1481	4	0	4	0	0	logfile
✔	3J7A	2660	2023-02-27	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.39	49.0	0.10	19.81	0.01	1.715	4.55	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.003	0.70	0.0	0.04	18.04	0.01	1.866	17.03	1.05	8.0	90.8	1.2	-1.89	2.71	0.40	0.77	1.02	68866	4106	35	1682	69	0	0	logfile
✔	7ZFW	14704	2023-02-20	2022-04-01	3.8	4.62	3.46	3.0	0.006	0.83	0.0	0.05	17.92	0.03	2.266	2.77	0.00	0.0	0.0	0.0	—	0.32	0.81	—	3.0	0.009	0.90	0.0	0.04	20.26	0.01	1.952	38.01	0.00	0.0	0.0	0.0	—	2.55	0.33	0.85	—	13188	0	1	615	0	0	0	logfile
✔	7K23	22641	2023-02-24	2020-09-08	3.3	3.44	3.16	3.4	0.007	0.81	0.0	0.05	17.18	0.00	1.620	19.51	5.40	9.3	90.5	0.2	-3.86	0.32	0.62	2.33	3.4	0.004	0.68	0.0	0.05	17.19	0.00	2.101	9.50	0.25	8.9	91.0	0.1	-1.79	1.66	0.41	0.85	2.68	21923	2781	15	0	0	0	0	logfile
✔	6R4R	4727	2023-02-17	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.6	0.005	0.81	0.0	0.05	16.69	0.00	2.109	15.14	0.68	9.1	90.9	0.0	-4.84	3.88	0.31	0.68	3.65	4312	539	7	0	0	0	0	logfile
✔	6HRE	0259	2023-02-17	2018-09-26	3.2	2.74	2.87	3.3	0.019	1.47	0.0	0.11	13.34	0.01	2.474	6.01	0.00	12.0	88.0	0.0	-4.17	0.32	0.80	4.40	2.8	0.005	0.88	0.0	0.05	17.64	0.00	2.152	9.22	0.25	8.4	91.6	0.0	-3.58	0.82	0.29	0.78	3.78	3522	462	6	0	0	0	0	logfile
✔	5M3L	3434	2023-02-23	2016-10-15	3.8	2.49	—	3.8	0.013	1.53	7.0	0.08	12.48	0.01	1.442	10.28	0.59	7.4	91.5	1.1	-4.86	0.32	0.76	2.04	3.6	0.004	0.76	0.0	0.04	16.98	0.00	2.103	11.76	1.08	5.3	94.5	0.2	-0.26	0.89	0.34	0.75	1.29	19007	2394	27	0	12	0	0	logfile
✔	6XTB	10618	2023-02-16	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.12	0.0	0.05	9.13	0.00	2.119	10.22	0.00	25.1	74.9	0.0	-5.72	2.48	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	7QK5	14038	2023-02-19	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.10	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.004	0.63	0.0	0.05	18.16	0.01	2.237	3.82	1.88	3.9	96.1	0.0	-1.69	1.47	0.36	0.82	7.53	10485	666	18	0	36	0	5337	logfile
✔	7RTo	24685	2023-02-17	2021-08-13	3.8	3.83	—	3.8	0.004	0.82	0.0	0.05	14.32	0.00	2.200	8.47	0.16	5.6	94.4	0.0	1.09	0.32	0.76	2.41	3.8	0.002	0.64	0.0	0.04	16.57	0.00	2.236	7.84	0.16	5.3	94.7	0.0	1.56	0.51	0.33	0.78	1.86	6607	888	3	0	0	0	0	logfile
✔	7K8D	22728	2023-02-19	2020-09-26	4.33	4.48	—	4.7	0.004	1.12	0.0	0.06	12.53	0.01	2.205	23.61	1.86	4.3	95.7	0.0	-2.98	0.33	0.40	—	4.6	0.003	0.80	0.0	0.04	13.50	0.01	2.094	15.68	0.00	4.9	95.1	0.0	0.82	1.46	0.41	0.49	—	5529	725	1	0	0	0	0	logfile
✔	7oZH	13124	2023-02-17	2021-06-28	3.02	3.20	1.84	3.3	0.024	1.40	0.0	0.09	7.44	0.01	2.546	14.72	0.00	5.4	94.6	0.0	-2.78	0.33	0.60	4.68	3.2	0.004	0.69	0.0	0.05	15.03	0.00	2.382	17.11	2.05	8.2	91.8	0.0	-2.61	2.53	0.40	0.69	0.33	3890	580	10	0	0	0	0	logfile
✔	6W2E	21526	2023-02-23	2020-03-05	4.4	4.45	—	4.4	0.006	1.04	1.0	0.06	10.30	0.01	1.618	7.99	0.68	4.5	95.1	0.4	-2.37	0.33	0.53	—	4.4	0.004	0.82	0.0	0.05	13.54	0.01	2.053	16.83	0.07	6.5	93.4	0.1	-1.20	1.37	0.40	0.75	—	62525	7943	19	0	0	0	0	logfile
✔	7TLD	25988	2023-02-24	2022-01-18	2.89	3.35	—	3.3	0.013	1.80	0.0	0.09	13.31	0.01	2.524	0.07	0.94	5.2	94.6	0.2	-1.25	0.33	0.48	3.75	3.3	0.003	0.59	0.0	0.04	15.32	0.00	2.161	5.99	1.33	3.4	96.6	0.0	0.25	0.62	0.59	0.77	3.01	22812	2916	3	0	0	0	0	logfile
✔	6CAJ	7442	2023-02-25	2018-01-31	2.8	2.84	—	4.2	0.008	0.88	0.0	0.17	9.84	0.01	1.467	5.88	0.24	4.5	95.5	0.0	-3.63	0.33	0.15	2.28	2.9	0.004	0.69	0.0	0.04	16.38	0.00	2.142	11.46	2.76	5.1	94.9	0.0	-0.19	1.21	0.75	0.85	2.84	24295	3210	11	0	1	0	0	logfile
✔	7QKY	14057	2023-02-17	2021-12-19	1.86	2.10	1.91	2.0	0.011	1.75	3.0	0.09	12.76	0.01	2.522	1.04	0.61	4.7	95.3	0.0	-3.08	0.33	0.75	8.32	2.0	0.004	0.74	0.0	0.05	16.56	0.00	2.028	5.37	0.61	6.2	93.8	0.0	-3.22	1.00	0.39	0.84	7.47	5760	396	6	0	0	0	2862	logfile
✔	7V49	31704	2023-02-16	2021-08-12	3.4	3.45	—	4.1	0.007	1.01	0.0	0.06	13.70	0.00	2.279	22.06	0.00	39.7	60.3	0.0	-7.67	0.33	0.73	5.03	4.1	0.003	0.73	0.0	0.05	14.81	0.00	2.500	7.22	0.00	13.2	86.8	0.0	-5.75	1.27	0.31	0.69	4.86	1221	180	3	0	0	0	0	logfile

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