Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J7A	2660	2022-07-04	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.39	49.0	0.10	19.81	0.01	1.715	4.58	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.004	0.74	0.0	0.04	18.16	0.01	1.853	17.51	0.94	8.9	89.8	1.2	-1.90	2.71	0.39	0.76	1.01	68866	4106	35	1682	69	0	0	logfile
✔	5M3L	3434	2022-07-04	2016-10-15	3.8	2.49	—	3.8	0.013	1.53	7.0	0.08	12.48	0.01	1.442	10.31	0.59	7.4	91.5	1.1	-4.86	0.32	0.76	2.04	3.6	0.006	0.86	0.0	0.04	17.26	0.01	2.050	11.57	0.75	5.2	94.6	0.2	-0.47	0.90	0.33	0.75	1.47	19007	2394	27	0	12	0	0	logfile
✔	6XTB	10618	2022-07-02	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.004	1.06	0.0	0.05	7.90	0.00	2.205	9.62	0.00	22.1	77.9	0.0	-5.53	2.43	0.34	0.64	—	1161	235	1	0	0	0	0	logfile
✔	7K23	22641	2022-07-05	2020-09-08	3.3	3.44	3.16	3.4	0.007	0.81	0.0	0.05	17.18	0.00	1.620	19.51	5.40	9.3	90.5	0.2	-3.86	0.32	0.62	2.33	3.4	0.006	0.76	0.0	0.05	17.34	0.01	2.057	10.22	0.57	9.4	90.4	0.1	-2.07	1.66	0.42	0.84	2.75	21923	2781	15	0	0	0	0	logfile
✔	7RTo	24685	2022-07-03	2021-08-13	3.8	3.83	—	3.8	0.004	0.82	0.0	0.05	14.32	0.00	2.200	8.55	0.16	5.6	94.4	0.0	1.09	0.32	0.76	2.41	3.8	0.004	0.70	0.0	0.04	16.48	0.00	2.241	8.16	0.16	5.2	94.8	0.0	1.55	0.52	0.33	0.77	1.93	6607	888	3	0	0	0	0	logfile
✔	7EGB	31111	2022-07-03	2021-03-24	3.3	3.51	—	34.0	0.008	1.11	62.0	0.07	15.42	0.01	1.322	21.23	3.22	7.3	91.9	0.8	-3.64	0.32	0.02	0.13	10.0	0.008	1.04	2.0	0.05	16.80	0.01	1.824	19.80	0.45	7.8	92.0	0.2	-1.26	1.09	0.41	0.19	0.15	113098	13887	63	138	18	0	0	logfile
✔	6R4R	4727	2022-07-03	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.7	0.006	0.86	0.0	0.05	16.98	0.01	2.114	17.42	0.68	10.9	89.1	0.0	-4.75	3.88	0.31	0.68	3.78	4312	539	7	0	0	0	0	logfile
✔	7QK5	14038	2022-07-03	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.67	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.004	0.64	0.0	0.05	18.34	0.01	2.238	4.68	2.74	3.7	96.3	0.0	-1.87	1.49	0.36	0.83	7.41	10485	666	18	0	36	0	5337	logfile
✔	6GYL	0091	2022-07-07	2018-06-30	4.8	4.06	4.25	12.0	0.008	0.47	0.0	0.04	11.68	0.00	0.860	9.28	0.16	6.2	92.8	1.0	-3.33	0.32	0.00	—	3.4	0.009	1.01	3.0	0.05	14.53	0.01	1.407	24.14	0.02	6.3	93.4	0.3	-1.66	1.22	0.50	0.18	—	43409	5250	30	112	11	0	0	logfile
✔	6HRE	0259	2022-07-03	2018-09-26	3.2	2.74	2.87	3.3	0.019	1.47	0.0	0.11	13.34	0.01	2.474	6.57	0.00	12.0	88.0	0.0	-4.17	0.32	0.80	4.40	2.8	0.007	0.94	0.0	0.05	17.28	0.00	2.123	9.50	0.50	9.3	90.7	0.0	-3.49	0.81	0.30	0.78	3.87	3522	462	6	0	0	0	0	logfile
✔	6W2E	21526	2022-07-03	2020-03-05	4.4	4.45	—	4.4	0.006	1.04	1.0	0.06	10.30	0.01	1.618	8.06	0.68	4.5	95.1	0.4	-2.37	0.33	0.53	—	4.4	0.005	0.88	0.0	0.05	13.70	0.01	2.047	19.21	0.10	8.1	91.8	0.1	-1.40	1.39	0.40	0.76	—	62525	7943	19	0	0	0	0	logfile
✔	7QKY	14057	2022-07-03	2021-12-19	1.86	2.10	1.91	2.0	0.011	1.75	3.0	0.09	12.76	0.01	2.522	1.04	0.61	4.7	95.3	0.0	-3.08	0.33	0.75	8.32	2.0	0.003	0.69	0.0	0.05	16.56	0.00	2.218	4.85	0.61	6.2	93.8	0.0	-3.18	1.00	0.40	0.84	7.35	5760	396	6	0	0	0	2862	logfile
✔	7K8D	22728	2022-07-03	2020-09-26	4.33	4.48	—	4.7	0.004	1.12	0.0	0.06	12.53	0.01	2.205	23.61	1.86	4.3	95.7	0.0	-2.98	0.33	0.40	—	4.7	0.003	0.83	0.0	0.04	13.33	0.01	2.120	13.72	0.00	4.3	95.7	0.0	0.70	1.45	0.41	0.49	—	5529	725	1	0	0	0	0	logfile
✔	6CAJ	7442	2022-07-05	2018-01-31	2.8	2.84	—	4.2	0.008	0.88	0.0	0.17	9.84	0.01	1.467	5.96	0.24	4.5	95.5	0.0	-3.63	0.33	0.15	2.28	2.9	0.011	1.12	2.0	0.04	15.91	0.00	1.756	14.31	2.92	4.3	95.7	0.0	-0.61	0.75	0.75	0.82	2.85	24295	3210	11	0	1	0	0	logfile
✔	4V91	2599	2022-07-05	2014-03-21	3.7	3.84	—	3.8	0.133	4.77	525.0	0.43	20.66	0.07	0.695	20.15	12.79	14.1	78.2	7.8	-5.39	0.33	0.36	0.15	3.8	0.037	1.45	1.0	0.04	17.34	0.02	1.816	16.56	0.20	8.3	90.9	0.7	-2.82	1.96	0.62	0.80	1.42	125665	6450	45	3482	0	0	0	logfile
✔	5H0R	9564	2022-07-04	2016-10-06	3.9	3.72	—	3.7	0.008	0.81	0.0	0.05	10.30	0.00	1.744	20.03	0.28	8.5	91.4	0.1	-4.11	0.33	0.70	1.99	3.7	0.005	0.82	0.0	0.04	15.36	0.01	2.089	17.41	0.76	7.3	92.5	0.2	-1.19	1.23	0.37	0.77	2.02	15037	1656	4	84	0	0	0	logfile
✘	3JCE	6550	2022-07-11	2015-12-01	3.2	4.36	—	14.0	0.008	0.87	0.0	0.04	14.83	0.00	1.106	32.70	0.47	10.4	84.8	4.8	-2.93	0.33	0.04	0.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	154017	6546	59	4798	2	0	0	logfile
✔	7TLD	25988	2022-07-05	2022-01-18	2.89	3.35	—	3.3	0.013	1.80	0.0	0.09	13.31	0.01	2.524	0.24	0.94	5.2	94.6	0.2	-1.25	0.33	0.48	3.75	3.3	0.004	0.62	0.0	0.04	15.31	0.00	2.158	6.25	1.52	3.4	96.6	0.0	0.12	0.60	0.60	0.77	2.98	22812	2916	3	0	0	0	0	logfile
✔	7QKZ	14058	2022-07-02	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.006	1.50	0.0	0.38	19.57	0.01	2.238	12.41	0.00	1.2	98.8	0.0	-0.68	5.09	0.34	0.64	6.83	1701	99	9	0	0	0	891	logfile
✔	5LY6	4118	2022-07-03	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.81	0.0	0.04	13.96	0.00	2.167	15.68	0.24	10.2	89.3	0.4	-2.62	3.61	0.40	0.77	—	3725	471	1	0	0	0	0	logfile

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