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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PB6 | 20288 | 2024-04-10 | 2019-06-13 | 4.29 | 5.03 | — | 4.3 | 0.010 | 1.13 | 0.0 | 0.05 | 16.26 | 0.01 | 1.968 | 10.82 | 0.11 | 10.6 | 89.1 | 0.3 | -4.79 | 0.68 | 0.39 | — | 4.3 | 0.003 | 0.67 | 0.0 | 0.04 | 16.88 | 0.00 | 1.871 | 15.36 | 0.00 | 7.5 | 92.4 | 0.1 | -2.32 | 0.93 | 0.82 | 0.73 | — | 69824 | 4091 | 13 | 156 | 5 | 0 | 34388 | logfile |
✔ | 8HK7 | 34848 | 2024-04-09 | 2022-11-25 | 3.0 | 3.70 | 3.51 | 3.9 | 0.009 | 0.75 | 0.0 | 0.04 | 16.92 | 0.00 | 1.579 | 11.81 | 0.53 | 8.6 | 91.2 | 0.2 | -0.87 | 0.43 | 0.39 | 0.28 | 3.6 | 0.004 | 0.92 | 0.0 | 0.04 | 19.36 | 0.00 | 2.129 | 12.86 | 2.12 | 7.5 | 92.5 | 0.0 | -0.99 | 2.58 | 0.60 | 0.77 | 1.69 | 15765 | 1872 | 8 | 0 | 17 | 0 | 0 | logfile |
✔ | 7Xo4 | 33336 | 2024-04-15 | 2022-04-30 | 3.24 | 2.35 | 3.35 | 2.1 | 0.002 | 0.50 | 0.0 | 0.04 | 11.87 | 0.00 | 1.184 | 7.12 | 0.00 | 2.0 | 98.0 | 0.0 | -2.83 | 0.52 | 0.40 | 1.77 | 2.1 | 0.004 | 0.82 | 2.0 | 0.05 | 14.11 | 0.00 | 2.098 | 9.75 | 2.87 | 4.1 | 95.9 | 0.0 | -0.64 | 1.06 | 0.70 | 0.77 | 2.06 | 33410 | 4252 | 10 | 0 | 41 | 0 | 0 | logfile |
✔ | 7K8D | 22728 | 2024-04-07 | 2020-09-26 | 4.33 | 4.48 | — | 4.7 | 0.004 | 1.12 | 0.0 | 0.06 | 12.53 | 0.01 | 2.205 | 23.61 | 1.86 | 4.3 | 95.7 | 0.0 | -2.98 | 0.33 | 0.40 | — | 4.6 | 0.004 | 0.85 | 0.0 | 0.04 | 13.28 | 0.01 | 2.153 | 17.55 | 0.00 | 5.4 | 94.6 | 0.0 | 0.21 | 1.47 | 0.43 | 0.49 | — | 5529 | 725 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WDF | 32437 | 2024-04-14 | 2021-12-21 | 3.9 | 4.20 | — | 4.0 | 0.002 | 0.51 | 0.0 | 0.04 | 7.63 | 0.00 | 2.170 | 7.49 | 0.00 | 4.3 | 95.6 | 0.1 | -1.73 | 0.54 | 0.40 | 0.73 | 4.0 | 0.004 | 0.79 | 0.0 | 0.05 | 14.37 | 0.00 | 2.083 | 21.74 | 2.88 | 5.1 | 94.8 | 0.0 | -0.96 | 1.60 | 0.76 | 0.72 | 0.58 | 31998 | 4101 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 7X28 | 32961 | 2024-04-16 | 2022-02-25 | 2.49 | 2.72 | — | 1.8 | 0.013 | 1.52 | 5.0 | 0.11 | 13.24 | 0.00 | 1.606 | 7.72 | 7.98 | 2.7 | 97.0 | 0.2 | 2.21 | 0.57 | 0.40 | 0.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31583 | 4119 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YLV | 33918 | 2024-04-08 | 2022-07-27 | 3.91 | 4.23 | 4.38 | 4.3 | 0.009 | 0.68 | 0.0 | 0.06 | 10.36 | 0.00 | 2.239 | 1.53 | 0.03 | 2.3 | 97.6 | 0.2 | -0.18 | 0.55 | 0.40 | 0.18 | 4.3 | 0.004 | 1.05 | 1.0 | 0.05 | 15.61 | 0.00 | 2.080 | 25.07 | 2.82 | 3.6 | 96.3 | 0.1 | -0.32 | 2.25 | 0.74 | 0.73 | 0.18 | 65495 | 8564 | 17 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JAC | 6343 | 2024-04-09 | 2015-06-05 | 4.8 | 6.42 | — | 9.4 | 0.007 | 1.81 | 3.0 | 0.07 | 10.64 | 0.03 | 1.020 | 57.64 | 4.17 | 5.0 | 90.3 | 4.8 | 1.36 | 0.42 | 0.40 | — | 9.1 | 0.012 | 1.69 | 0.0 | 0.07 | 13.57 | 0.01 | 1.926 | 81.43 | 0.00 | 28.0 | 70.8 | 1.2 | -5.43 | 3.68 | 0.54 | 0.60 | — | 15741 | 1716 | 3 | 0 | 1038 | 0 | 0 | logfile |
✔ | 7RZY | 24783 | 2024-04-09 | 2021-08-28 | 3.5 | 2.57 | 3.55 | 4.0 | 0.014 | 1.83 | 0.0 | 0.08 | 15.46 | 0.00 | 2.491 | 1.92 | 0.80 | 10.2 | 88.4 | 1.4 | -2.89 | 0.55 | 0.40 | 0.25 | 3.2 | 0.004 | 0.82 | 0.0 | 0.04 | 17.64 | 0.01 | 2.106 | 13.79 | 3.13 | 7.5 | 91.9 | 0.6 | -1.20 | 1.45 | 0.70 | 0.66 | 0.76 | 17458 | 2177 | 13 | 0 | 7 | 0 | 0 | logfile |
✘ | 8AZS | 15770 | 2024-04-06 | 2022-09-06 | 2.9 | 2.78 | 2.55 | 2.8 | 0.011 | 1.50 | 0.0 | 0.12 | 16.09 | 0.01 | 0.017 | 1346.55 | 0.00 | 3.1 | 96.9 | 0.0 | -1.98 | 0.27 | 0.40 | 5.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9036 | 1224 | 36 | 0 | 0 | 0 | 0 | logfile |
✔ | 5A63 | 3061 | 2024-04-07 | 2015-06-24 | 3.4 | 3.50 | 3.42 | 3.5 | 0.010 | 1.69 | 8.0 | 0.11 | 20.48 | 0.01 | 2.079 | 39.51 | 13.74 | 6.4 | 91.5 | 2.1 | -0.17 | 0.36 | 0.40 | 2.09 | 3.5 | 0.004 | 0.75 | 0.0 | 0.05 | 17.43 | 0.00 | 2.188 | 12.84 | 5.53 | 5.9 | 93.9 | 0.2 | 0.19 | 3.22 | 0.62 | 0.82 | 1.65 | 10003 | 1223 | 13 | 0 | 22 | 0 | 0 | logfile |
✔ | 7NKi | 12440 | 2024-04-13 | 2021-02-18 | 4.67 | 4.96 | — | 4.6 | 0.004 | 0.67 | 0.0 | 0.04 | 14.26 | 0.01 | 1.908 | 8.85 | 0.00 | 4.0 | 96.0 | 0.0 | -0.64 | 0.67 | 0.41 | — | 4.6 | 0.004 | 0.69 | 0.0 | 0.04 | 14.72 | 0.01 | 1.866 | 21.82 | 0.00 | 6.4 | 93.6 | 0.0 | -1.05 | 2.35 | 0.80 | 0.65 | — | 28775 | 1794 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 8E5o | 27916 | 2024-04-16 | 2022-08-22 | 4.4 | 5.37 | 4.31 | 3.8 | 0.010 | 1.17 | 3.0 | 0.07 | 15.49 | 0.01 | 1.211 | 13.44 | 4.25 | 8.8 | 90.5 | 0.7 | -4.35 | 0.69 | 0.41 | — | 3.0 | 0.003 | 0.62 | 0.0 | 0.04 | 14.07 | 0.00 | 1.837 | 40.34 | 0.00 | 7.0 | 92.9 | 0.1 | -0.41 | 1.79 | 0.90 | 0.78 | — | 39229 | 3350 | 10 | 87 | 3 | 0 | 11229 | logfile |
✔ | 7MLV | 23911 | 2024-04-09 | 2021-04-29 | 4.1 | 4.82 | — | 3.9 | 0.005 | 1.02 | 0.0 | 0.06 | 15.50 | 0.01 | 2.168 | 5.10 | 0.00 | 7.1 | 92.9 | 0.0 | -5.14 | 0.62 | 0.41 | — | 3.9 | 0.014 | 1.06 | 0.0 | 0.05 | 12.57 | 0.01 | 2.049 | 32.49 | 0.00 | 12.3 | 87.7 | 0.0 | -3.48 | 1.74 | 0.71 | 0.71 | — | 15055 | 1919 | 16 | 0 | 22 | 0 | 0 | logfile |
✔ | 7oCK | 12809 | 2024-04-13 | 2021-04-27 | 3.6 | 5.02 | — | 8.3 | 0.008 | 0.86 | 0.0 | 0.05 | 14.98 | 0.01 | 1.988 | 36.10 | 0.20 | 7.7 | 92.1 | 0.2 | -2.93 | 0.80 | 0.41 | -0.16 | 5.6 | 0.006 | 1.01 | 1.0 | 0.05 | 17.05 | 0.01 | 1.953 | 42.81 | 3.20 | 6.6 | 93.3 | 0.1 | -1.45 | 1.41 | 0.87 | 0.65 | -0.05 | 28276 | 3666 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6G90 | 4364 | 2024-04-08 | 2018-04-10 | 4.0 | 4.12 | — | 3.9 | 0.009 | 1.30 | 2.0 | 0.07 | 16.32 | 0.03 | 1.687 | 19.01 | 0.57 | 7.8 | 91.4 | 0.8 | -3.55 | 0.51 | 0.41 | — | 3.9 | 0.003 | 0.87 | 0.0 | 0.04 | 17.79 | 0.01 | 2.033 | 17.07 | 1.96 | 7.2 | 92.5 | 0.3 | -0.61 | 3.68 | 0.57 | 0.55 | — | 65050 | 6796 | 43 | 474 | 223 | 0 | 0 | logfile |
✔ | 5X59 | 6704 | 2024-04-13 | 2017-02-15 | 3.7 | 3.77 | — | 3.7 | 0.011 | 1.66 | 0.0 | 0.08 | 15.22 | 0.01 | 1.477 | 23.24 | 4.97 | 13.2 | 85.4 | 1.3 | -3.87 | 0.48 | 0.41 | 0.15 | 3.7 | 0.005 | 1.17 | 3.0 | 0.05 | 15.32 | 0.01 | 2.038 | 21.29 | 2.09 | 12.4 | 87.4 | 0.2 | -2.29 | 1.53 | 0.58 | 0.62 | 1.18 | 26838 | 3423 | 6 | 0 | 30 | 0 | 0 | logfile |
✘ | 8G34 | 29688 | 2024-04-16 | 2023-02-06 | 3.2 | 2.16 | — | 3.3 | 0.008 | 1.01 | 3.0 | 0.06 | 24.42 | 0.01 | 2.065 | 4.66 | 0.72 | 4.6 | 95.3 | 0.1 | -1.60 | 0.52 | 0.41 | 0.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 144256 | 5922 | 52 | 4559 | 0 | 0 | 0 | logfile |
✔ | 7X2A | 32963 | 2024-04-13 | 2022-02-25 | 2.49 | 2.71 | — | 1.8 | 0.013 | 1.51 | 6.0 | 0.11 | 12.93 | 0.00 | 1.682 | 6.97 | 6.68 | 2.2 | 97.6 | 0.2 | 2.33 | 0.57 | 0.42 | 1.04 | 1.8 | 0.004 | 0.81 | 0.0 | 0.05 | 15.44 | 0.00 | 2.070 | 14.39 | 1.86 | 3.9 | 96.0 | 0.1 | -0.33 | 2.15 | 0.83 | 0.81 | 2.04 | 26800 | 3486 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HLZ | 34886 | 2024-04-12 | 2022-12-02 | 3.5 | 3.89 | 3.48 | 3.4 | 0.010 | 1.15 | 1.0 | 0.06 | 21.96 | 0.01 | 1.958 | 26.05 | 25.98 | 11.7 | 86.6 | 1.8 | -4.60 | 0.61 | 0.42 | 0.73 | 3.5 | 0.003 | 0.77 | 0.0 | 0.05 | 17.68 | 0.00 | 2.070 | 16.26 | 4.43 | 7.1 | 92.5 | 0.4 | -1.67 | 1.97 | 0.75 | 0.63 | 0.87 | 24718 | 3034 | 6 | 0 | 0 | 0 | 0 | logfile |