Table showing results for April 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Qi8	4552	2021-04-02	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.7	0.007	1.05	0.0	0.04	14.75	0.00	1.956	12.19	0.00	5.7	94.3	0.0	-1.84	2.01	0.31	0.21	0.36	14789	1907	12	0	6	0	0	logfile
✔	6LB1	0867	2021-04-23	2019-11-13	2.58	2.93	—	38.0	0.011	1.02	0.0	0.06	10.72	0.01	0.386	65.49	0.16	7.2	92.7	0.1	-2.98	0.27	0.02	0.07	2.6	0.005	0.96	0.0	0.05	12.51	0.01	1.915	25.89	0.01	11.1	88.9	0.0	-2.93	1.87	0.37	0.23	0.24	329705	42029	183	0	0	0	0	logfile
✔	6LBQ	0871	2021-04-24	2019-11-14	2.6	2.57	—	38.0	0.012	1.05	0.0	0.07	14.32	0.01	0.262	60.54	0.49	5.6	94.3	0.1	-2.10	0.15	0.02	-0.02	2.5	0.004	0.79	0.0	0.05	13.53	0.01	1.864	18.71	0.01	7.3	92.7	0.0	-2.27	1.49	0.23	0.17	0.26	329705	42029	183	0	0	0	0	logfile
✔	6iLo	9689	2021-04-22	2018-10-19	3.2	3.31	—	20.0	0.008	1.03	60.0	0.06	10.45	0.01	0.510	60.79	0.00	7.8	92.2	0.0	-4.23	0.16	0.02	0.06	3.2	0.004	0.83	1.0	0.05	12.00	0.01	1.961	21.59	0.01	8.7	91.3	0.1	-2.80	2.34	0.27	0.21	0.23	328140	41580	180	0	0	0	0	logfile
✔	5YWP	6855	2021-04-02	2017-11-29	4.6	5.26	—	20.0	0.005	0.98	0.0	0.05	9.48	0.01	2.023	47.18	0.00	7.3	92.1	0.6	-3.63	0.12	0.02	—	48.0	0.003	0.72	0.0	0.04	10.94	0.00	2.115	12.74	0.00	4.0	95.6	0.4	-0.53	1.28	0.13	0.03	—	19561	2588	10	0	0	0	0	logfile
✔	6LBo	0870	2021-04-23	2019-11-14	3.18	3.32	—	38.0	0.012	1.05	0.0	0.07	14.32	0.01	0.262	60.54	0.49	5.6	94.3	0.1	-2.10	0.19	0.02	-0.07	3.2	0.004	0.82	0.0	0.05	13.87	0.01	2.017	19.38	0.03	8.0	92.0	0.0	-2.35	1.64	0.30	0.22	0.20	329705	42029	183	0	0	0	0	logfile
✔	5MSH	3565	2021-04-01	2017-01-04	4.25	3.96	—	20.0	0.014	1.57	0.0	0.07	9.56	0.01	2.323	2.36	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.4	0.003	0.73	0.0	0.05	12.88	0.01	2.202	14.07	0.00	8.1	91.9	0.0	-0.94	2.00	0.05	0.16	—	4287	551	2	0	0	0	0	logfile
✔	6REU	4857	2021-04-04	2019-04-12	4.2	4.32	4.74	30.0	0.006	0.99	0.0	0.06	15.07	0.01	1.681	9.40	0.42	5.7	94.1	0.1	-4.88	0.21	0.03	—	30.0	0.004	0.80	0.0	0.05	13.89	0.01	1.976	19.27	0.00	7.1	92.8	0.1	-1.97	2.26	0.27	0.21	—	33899	4503	25	0	10	0	0	logfile
✔	6EU3	3958	2021-04-04	2017-10-27	3.3	3.38	—	6.0	0.004	1.07	0.0	0.06	11.41	0.01	1.167	5.01	0.26	12.9	86.6	0.5	-5.18	0.23	0.03	0.17	3.3	0.005	0.87	0.0	0.05	13.92	0.01	1.938	12.59	0.02	12.7	87.0	0.3	-2.63	2.61	0.72	0.76	1.83	38330	4825	22	0	7	0	0	logfile
✔	5VZL	8749	2021-04-02	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	15.0	0.003	0.62	0.0	0.04	14.34	0.00	1.402	10.73	0.00	4.8	95.2	0.0	-1.26	2.67	0.41	0.22	0.14	13915	1451	3	115	1	0	0	logfile
✘	6RBE	4794	2021-04-01	2019-04-10	3.8	4.03	3.73	40.0	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.09	1.35	11.9	86.8	1.2	-4.17	0.25	0.03	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	5M6S	3451	2021-04-01	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	20.10	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.4	0.003	0.65	0.0	0.03	17.35	0.00	1.952	10.68	0.00	6.2	93.8	0.0	2.03	2.65	0.04	0.08	—	1593	98	1	0	0	0	793	logfile
✔	3JCD	6549	2021-04-03	2015-12-01	3.7	5.07	—	19.0	0.006	0.84	0.0	0.04	14.69	0.00	1.289	14.54	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.3	0.007	1.35	0.0	0.06	22.41	0.01	1.437	69.51	0.00	20.6	78.1	1.3	-4.61	4.35	0.77	0.54	0.30	147815	5982	57	4715	0	0	0	logfile
✔	3JCE	6550	2021-04-05	2015-12-01	3.2	4.36	—	14.0	0.008	0.88	0.0	0.04	14.83	0.00	1.106	32.35	0.47	10.4	84.8	4.8	-2.93	0.33	0.04	0.16	3.0	0.007	1.33	4.0	0.06	20.37	0.01	1.371	58.03	0.00	15.5	83.2	1.2	-3.74	2.35	0.73	0.48	0.16	154017	6546	59	4797	3	0	0	logfile
✔	6EU2	3957	2021-04-04	2017-10-27	3.4	3.45	—	6.0	0.004	1.04	0.0	0.06	11.35	0.01	1.787	5.05	0.40	13.0	86.5	0.5	-5.22	0.27	0.05	0.18	3.4	0.005	0.94	0.0	0.05	13.67	0.01	2.034	14.87	0.05	12.5	87.2	0.4	-2.63	1.84	0.74	0.77	1.65	38329	4825	22	0	7	0	0	logfile
✔	7C4T	30287	2021-04-14	2020-05-18	3.6	3.75	—	6.9	0.003	0.64	0.0	0.05	12.87	0.00	0.670	42.31	2.14	6.7	93.2	0.2	-4.23	0.21	0.06	0.13	3.7	0.003	0.74	0.0	0.04	12.60	0.01	2.053	14.30	0.03	6.5	93.3	0.2	-2.23	3.58	0.53	0.54	1.09	306540	39180	180	0	0	0	0	logfile
✔	6VoC	21260	2021-04-07	2020-01-30	3.1	3.49	—	20.0	0.006	0.90	0.0	0.06	8.74	0.01	0.163	459.01	0.00	1.9	98.1	0.0	-1.94	0.19	0.06	0.07	3.1	0.022	3.00	477.0	0.15	17.67	0.02	1.347	192.35	0.03	29.8	67.1	3.0	-5.86	7.43	0.26	0.15	-0.09	214200	28560	180	0	0	0	0	logfile
✔	7C4Y	30291	2021-04-12	2020-05-18	3.5	3.66	—	7.2	0.003	0.65	0.0	0.05	14.43	0.01	0.358	41.16	5.11	6.4	93.4	0.2	-4.56	0.24	0.06	0.06	3.6	0.003	0.72	0.0	0.05	12.71	0.01	2.070	13.69	0.02	5.9	93.9	0.2	-2.17	2.55	0.53	0.47	0.70	299880	38340	180	0	0	0	0	logfile
✔	6H5i	0140	2021-04-05	2018-07-24	3.9	3.87	—	23.0	0.006	0.84	0.0	0.05	10.47	0.01	2.196	2.63	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.003	0.70	0.0	0.04	13.36	0.00	2.074	14.63	0.00	4.3	95.7	0.0	0.62	1.46	0.38	0.26	0.26	43900	5392	26	0	0	0	0	logfile
✔	7C4W	30290	2021-04-16	2020-05-18	3.4	3.53	—	7.4	0.004	0.70	0.0	0.05	14.36	0.01	0.485	33.90	7.64	5.7	94.1	0.2	-3.96	0.17	0.06	0.22	3.5	0.004	0.82	0.0	0.05	13.04	0.01	2.000	17.91	0.14	7.4	92.3	0.3	-2.26	2.30	0.47	0.49	0.94	308460	39360	180	0	0	0	0	logfile

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