Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5ND4	3622	2021-12-01	2017-03-07	4.4	5.55	—	5.5	0.009	1.49	11.0	0.20	21.69	0.01	1.678	26.62	15.57	14.5	77.1	8.3	-4.90	0.37	0.37	—	5.4	0.004	0.91	0.0	0.05	15.31	0.01	1.348	29.15	0.10	7.9	91.6	0.5	-2.12	1.92	0.48	0.72	—	9435	1175	6	1	6	0	0	logfile
✔	7M3L	23656	2021-12-01	2021-03-18	3.2	4.99	—	3.3	0.009	0.97	0.0	0.06	15.05	0.01	1.551	6.78	0.30	9.1	90.6	0.3	-3.19	0.29	0.38	0.40	3.1	0.004	0.79	0.0	0.04	15.22	0.00	2.136	17.31	0.45	8.2	91.7	0.1	-1.01	3.82	0.46	0.76	2.14	6113	775	3	0	0	0	0	logfile
✔	5A63	3061	2021-12-01	2015-06-24	3.4	3.50	3.42	3.5	0.010	1.68	8.0	0.11	19.25	0.01	2.079	39.51	13.74	6.4	91.5	2.1	-0.17	0.36	0.40	2.09	3.5	0.004	0.73	0.0	0.04	17.94	0.00	2.201	12.64	0.57	5.9	93.8	0.3	-0.05	3.23	0.64	0.83	2.03	10003	1223	7	0	22	0	0	logfile
✔	6FU8	4319	2021-12-01	2018-02-26	3.2	4.42	2.97	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.82	0.0	0.04	14.91	0.00	2.261	15.40	0.00	10.0	88.8	1.2	-1.84	3.11	0.22	0.60	-0.89	1364	82	1	0	0	0	711	logfile
✔	7JGF	22325	2021-12-01	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.51	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.48	0.0	0.04	13.28	0.00	2.151	52.23	0.41	5.2	94.8	0.0	1.10	0.63	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	6XTB	10618	2021-12-01	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.004	1.06	0.0	0.05	7.90	0.00	2.205	9.62	0.00	22.1	77.9	0.0	-5.53	2.43	0.34	0.64	—	1161	235	1	0	0	0	0	logfile
✔	6PMJ	20395	2021-12-01	2019-07-02	3.91	5.34	—	4.4	0.011	1.21	0.0	0.06	15.82	0.01	2.011	11.04	0.31	10.4	89.3	0.3	-4.41	0.67	0.43	0.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57984	3453	10	110	4	0	28609	logfile
✔	3J03	5138	2021-12-02	2011-02-10	4.8	4.09	—	6.5	0.014	1.51	16.0	0.08	13.07	0.02	2.471	3.31	1.78	3.5	96.3	0.2	-1.89	0.66	0.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	58640	7856	16	0	0	0	0	logfile
✔	6X66	22071	2021-12-01	2020-05-27	4.2	6.75	—	8.4	0.016	1.73	27.0	0.08	14.04	0.01	2.162	21.73	0.38	12.3	87.7	0.0	-3.77	0.72	0.45	—	4.2	0.005	0.80	1.0	0.05	12.69	0.00	1.857	24.41	0.00	8.0	92.0	0.0	-2.10	2.52	0.78	0.69	—	109070	15548	117	0	0	0	0	logfile
✔	6Y9A	10734	2021-12-01	2020-03-06	4.2	5.61	—	5.7	0.004	0.81	0.0	0.05	13.59	0.01	2.211	10.90	0.00	5.9	94.1	0.0	-1.17	0.53	0.45	—	5.6	0.003	0.72	0.0	0.04	13.34	0.01	2.133	17.52	0.00	5.6	94.4	0.0	0.15	1.38	0.55	0.66	—	5948	776	4	0	0	0	0	logfile
✔	6BNP	7116	2021-12-01	2017-11-17	4.6	4.61	3.78	4.4	0.015	2.10	24.0	0.11	16.18	0.02	1.814	0.55	1.80	8.3	90.3	1.3	-3.94	0.48	0.46	—	4.4	0.002	0.72	0.0	0.04	14.52	0.00	2.075	10.60	0.00	5.0	94.8	0.3	-0.85	2.30	0.60	0.66	—	56792	7160	22	0	16	0	0	logfile
✔	7FG3	31577	2021-12-01	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.23	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.009	0.98	0.0	0.05	16.79	0.01	2.094	23.98	0.30	15.7	83.7	0.6	-3.71	0.78	0.23	0.45	0.29	9054	1166	2	0	0	0	0	logfile
✔	7BZY	30263	2021-12-01	2020-04-29	3.7	5.07	3.67	2.9	0.005	1.03	0.0	0.05	7.60	0.00	2.175	11.89	0.00	15.0	84.6	0.3	-5.26	0.62	0.47	—	3.4	0.003	0.80	0.0	0.05	5.52	0.00	2.116	12.77	0.00	14.4	85.6	0.0	-2.69	1.26	0.85	0.74	—	6169	1260	3	0	0	0	0	logfile
✘	5W7G	8780	2021-12-01	2017-06-19	4.5	4.20	—	4.2	0.015	1.17	0.0	0.07	15.16	0.01	2.165	7.01	0.45	1.2	98.8	0.0	-0.31	0.50	0.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53508	5397	44	504	0	0	0	logfile
✘	6TM2	10517	2021-12-01	2019-12-03	2.95	3.12	—	3.1	0.008	1.01	0.0	0.06	10.00	0.01	2.181	3.02	0.10	11.3	88.7	0.0	-4.14	0.44	0.47	3.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55254	7230	60	0	54	138	0	logfile
✔	6oG3	20051	2021-12-01	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.006	1.22	0.0	0.00	8.59	0.00	2.605	57.07	0.00	14.1	85.9	0.0	-1.78	2.19	0.66	0.83	—	1215	396	4	0	9	0	0	logfile
✔	5U1D	8482	2021-12-01	2016-11-28	3.97	4.06	—	4.3	0.007	1.17	0.0	0.05	12.05	0.00	2.452	0.07	0.84	5.7	94.1	0.2	-2.16	0.36	0.48	1.30	4.3	0.004	0.78	0.0	0.04	15.92	0.00	1.985	14.73	0.51	4.8	95.1	0.1	0.73	1.31	0.53	0.75	1.33	7815	1168	3	0	0	0	0	logfile
✔	3iZK	5247	2021-12-02	2010-10-29	4.9	4.48	—	7.1	0.014	1.48	16.0	0.08	12.45	0.02	2.461	2.38	0.77	2.0	97.5	0.4	-1.62	0.65	0.48	—	6.9	0.003	0.72	0.0	0.04	13.43	0.00	2.218	20.54	0.00	3.5	96.5	0.0	-0.09	1.98	0.82	0.75	—	58448	7856	16	0	0	0	0	logfile
✔	7o40	12713	2021-12-01	2021-04-03	4.3	6.44	4.63	6.7	0.017	1.92	1.0	0.11	18.05	0.01	0.592	10.79	1.09	2.1	97.3	0.7	3.48	0.59	0.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	168181	21862	119	0	17	0	0	logfile
✔	7ENJ	31211	2021-12-01	2021-04-17	4.4	4.62	—	4.0	0.011	1.18	16.0	0.07	15.29	0.01	2.211	7.80	1.23	5.7	93.7	0.6	-2.67	0.75	0.49	—	4.1	0.003	0.66	0.0	0.04	14.03	0.00	2.129	12.35	0.00	5.2	94.7	0.1	1.31	0.75	0.83	0.70	—	57971	7340	27	0	21	0	0	logfile

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