Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5VZL	8749	2022-12-13	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.76	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.003	0.68	0.0	0.04	15.78	0.00	1.238	14.34	0.50	5.8	94.2	0.0	-1.59	1.27	0.39	0.19	0.68	13915	1451	3	115	1	0	0	logfile
✔	6REU	4857	2022-12-18	2019-04-12	4.2	4.32	4.74	30.0	0.006	0.99	0.0	0.06	15.07	0.01	1.681	9.47	0.42	5.7	94.1	0.1	-4.88	0.21	0.03	—	30.0	0.003	0.77	0.0	0.05	13.96	0.00	1.871	17.84	0.00	6.1	93.8	0.1	-1.72	1.51	0.26	0.17	—	33899	4503	25	0	10	0	0	logfile
✔	6Z5U	11082	2022-12-13	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	11.91	0.01	0.901	4.94	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.5	0.003	0.76	0.0	0.04	14.53	0.00	1.928	14.28	0.41	5.2	94.8	0.0	-0.62	1.59	0.29	0.18	0.56	17880	2334	14	0	4	0	0	logfile
✔	6EU3	3958	2022-12-20	2017-10-27	3.3	3.38	—	6.0	0.004	1.06	0.0	0.06	11.41	0.01	1.167	5.10	0.26	12.9	86.6	0.5	-5.18	0.23	0.03	0.17	3.3	0.003	0.84	0.0	0.05	15.81	0.00	1.912	14.56	0.40	11.7	88.0	0.3	-2.66	1.63	0.62	0.61	0.65	38330	4825	22	0	7	0	0	logfile
✔	6EU2	3957	2022-12-20	2017-10-27	3.4	3.45	—	6.0	0.004	1.04	0.0	0.06	11.35	0.01	1.787	5.07	0.40	13.0	86.5	0.5	-5.22	0.27	0.04	0.18	3.4	0.006	1.12	0.0	0.06	15.75	0.01	1.981	21.10	1.13	13.5	86.0	0.5	-3.25	1.81	0.67	0.67	0.69	38329	4825	22	0	7	0	0	logfile
✔	5M6S	3451	2022-12-11	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	24.50	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.3	0.003	0.59	0.0	0.03	18.68	0.00	2.007	8.17	0.00	5.2	94.8	0.0	2.82	2.46	0.03	0.06	—	1593	98	1	0	0	0	793	logfile
✔	7PC2	13316	2022-12-15	2021-08-03	2.8	3.39	—	6.5	0.033	1.53	5.0	0.05	15.16	0.01	1.809	9.01	1.49	7.8	92.2	0.0	-3.81	0.43	0.05	-0.14	3.1	0.011	0.95	0.0	0.05	16.36	0.01	2.036	16.86	2.94	6.3	93.7	0.0	-1.20	1.45	0.59	0.38	0.38	27063	3093	68	0	210	0	0	logfile
✔	7V66	31736	2022-12-18	2021-08-19	1.89	1.85	—	5.2	0.006	1.02	0.0	0.07	12.14	0.01	1.929	1.95	2.07	1.9	98.0	0.0	1.97	0.09	0.05	1.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33216	4128	24	0	0	0	0	logfile
✔	6H5i	0140	2022-12-11	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.003	0.70	0.0	0.04	15.15	0.00	2.076	14.87	0.34	4.1	95.9	0.0	1.09	1.96	0.38	0.25	0.14	43900	5392	26	0	0	0	0	logfile
✔	6TQM	10555	2022-12-20	2019-12-16	3.8	4.34	3.78	20.0	0.014	0.98	0.0	0.12	15.01	0.01	2.083	4.06	1.40	14.5	85.5	0.0	-5.95	0.30	0.07	0.30	3.9	0.003	0.76	0.0	0.04	16.03	0.00	1.930	15.53	0.24	9.8	90.2	0.0	-3.51	1.31	0.38	0.25	0.49	39616	2578	6	0	4	0	19804	logfile
✔	6LTJ	0974	2022-12-18	2020-01-22	3.7	4.16	—	15.0	0.010	1.08	12.0	0.07	22.08	0.01	2.173	14.06	2.63	6.4	93.3	0.3	-3.67	0.46	0.08	0.04	10.0	0.003	0.75	0.0	0.04	22.18	0.00	2.125	17.36	0.22	3.7	96.3	0.0	0.01	1.54	0.58	0.25	0.32	34283	3656	21	238	1	0	0	logfile
✘	6RBE	4795	2022-12-19	2019-04-10	3.8	3.81	4.03	5.1	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.23	1.35	11.9	86.8	1.2	-4.17	0.38	0.09	0.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	7W6P	32331	2022-12-12	2021-12-02	3.47	3.79	—	9.6	0.004	0.69	0.0	0.04	13.77	0.00	2.196	14.90	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	9.2	0.002	0.63	0.0	0.04	15.18	0.00	2.193	12.74	0.22	4.7	95.3	0.0	-0.44	1.88	0.29	0.20	0.86	8408	1083	5	0	1	0	0	logfile
✘	6C9Y	7438	2022-12-18	2018-01-29	4.25	4.33	—	9.7	0.008	1.53	5.0	0.08	13.66	0.01	2.064	6.66	5.32	7.8	90.7	1.5	-4.02	0.50	0.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28920	3685	7	0	3	0	0	logfile
✔	5o9G	3765	2022-12-14	2017-06-19	4.8	5.07	4.71	10.4	0.003	0.48	0.0	0.03	22.47	0.00	2.194	7.47	0.36	9.1	90.8	0.1	-4.25	0.51	0.13	—	4.8	0.004	0.75	0.0	0.04	24.23	0.00	1.283	21.14	0.00	5.0	94.9	0.1	-1.25	2.84	0.84	0.72	—	19681	1610	11	324	2	0	0	logfile
✔	6H05	0108	2022-12-21	2018-07-06	2.9	3.15	—	3.5	0.016	1.09	0.0	0.07	9.74	0.01	0.426	17.81	0.00	8.5	91.5	0.0	-5.50	0.36	0.13	0.50	3.1	0.003	0.86	0.0	0.04	15.56	0.00	2.134	15.94	2.28	4.3	95.7	0.0	-1.34	1.63	0.58	0.47	0.65	44544	5664	24	0	0	0	0	logfile
✔	5M5H	4155	2022-12-11	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.94	0.0	0.05	12.39	0.01	2.260	21.55	0.00	7.9	92.1	0.0	-1.85	2.19	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	5WVE	6690	2022-12-15	2016-12-24	4.4	4.90	—	5.1	0.008	1.34	7.0	0.08	19.34	0.01	1.493	69.21	16.86	7.1	89.5	3.4	-0.75	0.49	0.15	—	4.5	0.003	0.81	0.0	0.04	13.48	0.00	1.820	22.98	0.01	7.4	91.9	0.7	-1.81	1.59	0.80	0.60	—	78605	9766	39	0	21	0	0	logfile
✔	6CAJ	7442	2022-12-15	2018-01-31	2.8	2.84	—	4.2	0.008	0.88	0.0	0.17	9.84	0.01	1.467	6.13	0.24	4.5	95.5	0.0	-3.63	0.33	0.15	2.28	2.9	0.004	0.68	0.0	0.05	16.35	0.00	2.148	11.48	3.19	5.3	94.7	0.0	-0.20	1.20	0.75	0.84	2.89	24295	3210	11	0	1	0	0	logfile
✔	5NV3	3699	2022-12-20	2017-05-03	3.39	3.43	—	3.4	0.007	1.22	2.0	0.07	14.59	0.00	2.164	2.84	0.94	5.6	94.2	0.2	-2.82	0.09	0.16	3.78	3.4	0.003	0.58	0.0	0.04	16.10	0.00	1.960	8.64	0.25	3.1	96.9	0.0	-0.13	1.63	0.60	0.75	3.92	37816	4768	24	0	16	0	0	logfile

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