Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5GAK	3227	2021-06-05	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.07	20.85	0.01	0.816	23.80	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	4.0	0.004	0.94	0.0	0.05	20.72	0.01	1.968	28.60	0.40	11.3	88.3	0.4	-3.21	2.47	0.36	0.30	0.01	128975	6434	50	3597	234	0	0	logfile
✔	5YWP	6855	2021-06-02	2017-11-29	4.6	5.26	—	20.0	0.005	0.98	0.0	0.05	9.48	0.01	2.023	47.18	0.00	7.3	92.1	0.6	-3.63	0.12	0.02	—	48.0	0.003	0.72	0.0	0.04	10.94	0.00	2.115	12.74	0.00	4.0	95.6	0.4	-0.53	1.28	0.13	0.03	—	19561	2588	10	0	0	0	0	logfile
✔	5VZL	8749	2021-06-02	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	4.3	0.005	0.84	0.0	0.04	16.49	0.01	1.269	19.59	1.00	9.1	90.9	0.0	-2.29	2.41	0.43	0.27	0.28	13915	1451	3	115	1	0	0	logfile
✔	6REU	4857	2021-06-04	2019-04-12	4.2	4.32	4.74	30.0	0.006	0.99	0.0	0.06	15.07	0.01	1.681	9.40	0.42	5.7	94.1	0.1	-4.88	0.21	0.03	—	30.0	0.004	0.80	0.0	0.05	13.89	0.01	1.976	19.27	0.00	7.1	92.8	0.1	-1.97	2.26	0.27	0.21	—	33899	4503	25	0	10	0	0	logfile
✔	6EU3	3958	2021-06-04	2017-10-27	3.3	3.38	—	6.0	0.004	1.07	0.0	0.06	11.41	0.01	1.167	5.01	0.26	12.9	86.6	0.5	-5.18	0.23	0.03	0.17	3.3	0.005	0.90	0.0	0.05	16.35	0.01	1.906	13.38	0.49	12.4	87.3	0.3	-2.67	1.83	0.72	0.76	1.47	38330	4825	22	0	7	0	0	logfile
✘	6RBE	4794	2021-06-02	2019-04-10	3.8	4.03	3.73	40.0	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.09	1.35	11.9	86.8	1.2	-4.17	0.25	0.03	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	6Z5U	11082	2021-06-02	2020-05-27	3.9	4.52	—	38.0	0.021	1.87	10.0	0.11	12.07	0.01	0.901	4.64	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.5	0.004	0.93	0.0	0.05	14.73	0.01	2.038	19.33	0.36	5.9	94.1	0.0	-0.54	1.76	0.31	0.22	0.92	17880	2334	14	0	4	0	0	logfile
✔	3JCD	6549	2021-06-04	2015-12-01	3.7	5.07	—	19.0	0.006	0.84	0.0	0.04	14.69	0.00	1.289	14.54	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.5	0.006	1.28	0.0	0.06	22.39	0.01	1.430	64.25	0.80	19.6	79.1	1.3	-4.44	3.47	0.77	0.53	0.22	147815	5982	57	4715	0	0	0	logfile
✔	5M6S	3451	2021-06-01	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	20.10	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.4	0.003	0.65	0.0	0.03	17.35	0.00	1.952	10.68	0.00	6.2	93.8	0.0	2.03	2.65	0.04	0.08	—	1593	98	1	0	0	0	793	logfile
✔	3JCE	6550	2021-06-05	2015-12-01	3.2	4.36	—	14.0	0.008	0.88	0.0	0.04	14.83	0.00	1.106	32.35	0.47	10.4	84.8	4.8	-2.93	0.33	0.04	0.16	3.1	0.007	1.27	1.0	0.06	21.85	0.01	1.546	58.17	0.93	16.7	82.1	1.1	-4.21	3.51	0.78	0.56	0.21	154017	6546	59	4797	3	0	0	logfile
✔	6EU2	3957	2021-06-04	2017-10-27	3.4	3.45	—	6.0	0.004	1.04	0.0	0.06	11.35	0.01	1.787	5.05	0.40	13.0	86.5	0.5	-5.22	0.27	0.05	0.18	3.4	0.004	0.86	0.0	0.05	15.88	0.01	1.923	13.55	0.52	11.5	88.2	0.3	-2.56	1.69	0.70	0.71	0.99	38329	4825	22	0	7	0	0	logfile
✔	6H5i	0140	2021-06-05	2018-07-24	3.9	3.87	—	23.0	0.006	0.84	0.0	0.05	10.47	0.01	2.196	2.63	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.004	0.79	0.0	0.04	15.71	0.01	2.065	17.05	0.36	5.0	95.0	0.0	0.39	2.20	0.39	0.28	0.21	43900	5392	26	0	0	0	0	logfile
✔	6VoC	21260	2021-06-03	2020-01-30	3.1	3.49	—	20.0	0.006	0.90	0.0	0.06	8.74	0.01	0.163	459.01	0.00	1.9	98.1	0.0	-1.94	0.19	0.06	0.07	3.1	0.024	3.10	614.0	0.16	21.31	0.02	1.378	213.55	1.94	28.7	67.7	3.6	-5.88	7.31	0.26	0.13	0.01	214200	28560	180	0	0	0	0	logfile
✔	6KFK	9974	2021-06-06	2019-07-08	4.1	4.28	—	15.0	0.015	2.00	0.0	0.08	10.94	0.01	1.444	19.39	0.00	8.2	89.5	2.2	-1.03	0.14	0.06	—	4.2	0.004	0.87	0.0	0.05	13.11	0.00	2.083	19.62	0.01	9.4	89.6	1.0	-1.60	2.00	0.24	0.31	—	65076	8844	22	0	0	0	0	logfile
✔	6TQM	10555	2021-06-04	2019-12-16	3.8	4.34	3.78	20.0	0.013	0.92	0.0	0.12	14.97	0.01	2.083	4.06	1.40	14.5	85.5	0.0	-5.95	0.30	0.07	0.30	4.0	0.007	1.08	1.0	0.05	16.37	0.01	1.796	29.27	0.53	14.3	85.6	0.0	-4.07	1.57	0.40	0.28	0.43	39616	2578	6	0	4	0	19804	logfile
✘	6RBE	4795	2021-06-02	2019-04-10	3.8	3.81	4.03	5.1	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.09	1.35	11.9	86.8	1.2	-4.17	0.38	0.09	0.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	6LTJ	0974	2021-06-04	2020-01-22	3.7	4.16	—	15.0	0.010	1.08	12.0	0.07	22.08	0.01	2.173	13.82	2.63	6.4	93.3	0.3	-3.67	0.46	0.09	0.04	3.6	0.007	0.93	0.0	0.04	22.31	0.01	1.525	21.73	0.13	4.0	96.0	0.0	-0.04	1.73	0.60	0.30	0.52	34283	3656	21	238	1	0	0	logfile
✔	7EGC	31112	2021-06-04	2021-03-24	3.9	3.72	—	4.9	0.008	1.13	76.0	0.08	15.44	0.01	1.402	23.95	3.39	7.3	91.9	0.8	-3.59	0.43	0.10	0.10	3.1	0.004	0.79	0.0	0.04	16.48	0.01	2.089	13.53	0.20	5.4	94.4	0.2	-0.41	1.35	0.52	0.32	0.40	113129	13879	63	142	18	0	0	logfile
✔	5L3P	4001	2021-06-04	2016-05-24	3.7	4.66	—	16.0	0.006	0.61	0.0	0.19	12.36	0.02	2.115	7.15	0.00	8.2	89.4	2.4	-1.95	0.44	0.11	0.16	4.0	0.004	0.97	1.0	0.04	19.57	0.01	1.828	40.37	0.64	10.1	89.3	0.6	-2.77	2.98	0.72	0.51	0.05	149606	6419	58	4704	76	0	0	logfile
✔	6C9Y	7438	2021-06-03	2018-01-29	4.25	4.33	—	9.7	0.008	1.53	5.0	0.08	13.66	0.01	2.064	6.64	5.32	7.8	90.7	1.5	-4.02	0.50	0.13	—	4.1	0.006	0.99	0.0	0.05	13.70	0.01	1.918	19.55	0.00	6.5	93.4	0.1	-1.88	3.90	0.66	0.51	—	28920	3685	7	0	3	0	0	logfile

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