Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5FN1	3236	2023-09-30	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	11.47	0.00	0.877	53.81	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	3.9	0.005	0.87	0.0	0.04	16.79	0.01	1.856	24.11	1.08	13.3	85.7	1.0	-1.33	2.15	0.41	0.75	0.99	61308	3906	36	90	0	0	30078	logfile
✔	7Ao8	11837	2023-09-30	2020-10-14	4.5	5.23	4.51	3.6	0.011	1.51	8.0	0.26	16.21	0.01	1.219	8.80	4.18	6.9	92.5	0.6	-3.46	0.62	0.31	—	3.6	0.002	0.66	0.0	0.04	14.05	0.00	1.997	16.46	0.00	3.1	96.9	0.0	-0.64	2.63	0.85	0.72	—	10905	1350	9	0	8	0	0	logfile
✔	7TMC	25995	2023-09-27	2022-01-19	3.25	3.24	2.95	4.2	0.005	0.72	0.0	0.07	14.28	0.01	2.152	13.78	0.00	9.5	90.5	0.0	-4.08	0.21	0.31	-0.39	3.4	0.005	0.89	0.0	0.07	17.14	0.01	2.144	18.47	0.53	12.0	88.0	0.0	-4.18	1.94	0.36	0.76	3.09	3426	405	6	0	12	0	0	logfile
✔	8F7J	28905	2023-09-27	2022-11-18	4.32	4.45	4.63	8.9	0.005	0.92	0.0	0.05	15.44	0.01	2.282	15.12	0.26	5.7	94.3	0.0	-3.18	0.38	0.32	—	4.3	0.004	0.80	0.0	0.04	13.92	0.01	2.122	24.96	0.00	9.4	90.6	0.0	-3.21	2.94	0.44	0.45	—	3321	407	1	0	0	0	0	logfile
✔	6RWE	10038	2023-09-27	2019-06-04	3.0	3.12	—	3.7	0.009	1.02	1.0	0.06	13.12	0.01	1.975	6.33	0.73	7.4	92.5	0.1	-4.84	0.44	0.32	0.00	3.1	0.004	0.82	0.0	0.05	18.58	0.00	1.992	14.06	2.87	6.5	93.5	0.0	-1.41	2.49	0.76	0.80	1.68	53719	6454	26	95	8	0	0	logfile
✔	6YW7	10960	2023-09-28	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	1.01	0.0	0.02	5.70	0.00	2.420	14.13	0.00	13.2	86.6	0.2	-3.90	6.17	0.81	0.75	—	5426	1788	9	0	2	0	0	logfile
✔	6i1X	0326	2023-09-28	2018-10-30	3.7	3.83	—	3.8	0.013	1.81	34.0	0.10	14.94	0.01	0.458	50.06	4.35	7.5	90.6	1.9	-3.51	0.50	0.32	0.28	3.8	0.003	0.77	0.0	0.05	16.37	0.00	2.134	17.07	0.28	4.8	95.0	0.2	-0.88	1.06	0.65	0.60	0.83	54915	7290	15	0	0	0	0	logfile
✔	6HD5	0201	2023-09-29	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.81	0.0	0.04	11.92	0.01	2.072	21.86	0.00	6.4	93.5	0.1	-0.40	2.04	0.46	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	8DWi	27755	2023-09-27	2022-08-01	3.4	4.06	3.58	4.1	0.003	0.63	0.0	0.04	13.02	0.01	2.258	7.44	0.00	5.0	95.0	0.0	0.29	0.28	0.33	-0.40	4.0	0.003	0.74	0.0	0.04	16.17	0.01	2.113	11.24	0.64	5.0	95.0	0.0	-0.32	1.76	0.49	0.73	1.52	3192	424	1	0	0	0	0	logfile
✔	7UiF	26544	2023-09-30	2022-03-29	4.6	5.63	4.34	6.7	0.004	0.69	0.0	0.05	13.63	0.01	0.850	9.76	0.06	1.9	98.0	0.1	0.62	0.48	0.33	—	6.7	0.003	0.75	0.0	0.05	13.27	0.00	2.026	20.55	0.00	3.5	96.5	0.0	0.05	1.21	0.61	0.62	—	63137	7857	33	0	0	0	0	logfile
✔	7N9Y	24264	2023-09-28	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.2	0.003	1.01	0.0	0.00	4.81	0.00	2.550	7.73	0.00	18.2	81.3	0.5	-4.24	2.61	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	6oFJ	20047	2023-09-30	2019-03-30	4.5	5.60	3.27	7.8	0.007	0.96	0.0	0.05	15.74	0.01	2.135	3.69	0.00	7.1	92.9	0.0	-4.36	0.48	0.33	—	7.8	0.002	0.58	0.0	0.04	14.03	0.00	2.002	10.00	0.00	8.7	91.3	0.0	-1.93	1.22	0.56	0.54	—	10310	650	2	0	0	0	5142	logfile
✔	7Uo0	26636	2023-09-30	2022-04-12	3.4	4.47	—	3.5	0.003	2.23	0.0	0.11	24.66	0.00	2.117	7.29	2.04	6.4	93.6	0.0	-0.20	0.73	0.34	1.64	3.5	0.004	0.81	0.0	0.04	26.37	0.01	2.073	21.62	1.02	9.1	90.9	0.0	-3.24	4.74	0.83	0.62	1.06	10697	112	4	455	7	0	0	logfile
✔	7URi	26713	2023-09-27	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.008	1.44	0.0	0.07	24.06	0.01	2.073	23.33	0.00	0.0	0.0	0.0	—	2.06	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7YNL	33965	2023-09-27	2022-07-31	2.6	2.16	2.41	3.2	0.009	2.40	0.0	0.06	16.15	0.05	2.128	26.40	0.00	8.9	91.1	0.0	-6.11	0.27	0.35	2.03	3.4	0.004	0.96	0.0	0.05	18.12	0.00	2.218	11.58	8.44	9.8	90.2	0.0	-4.15	3.90	0.39	0.64	2.49	4080	464	16	0	16	0	0	logfile
✔	8CTG	26989	2023-09-28	2022-05-14	3.8	3.16	3.72	3.3	0.004	0.98	0.0	0.05	7.62	0.01	2.113	12.33	6.90	9.7	88.5	1.8	-3.04	0.57	0.35	-0.17	2.3	0.004	0.91	0.0	0.04	7.56	0.00	2.231	7.59	1.15	15.0	84.8	0.2	-3.09	2.07	0.60	0.45	1.92	5100	1006	4	0	1	0	0	logfile
✔	8FEL	29032	2023-09-29	2022-12-06	4.64	5.02	4.40	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.191	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.2	0.002	0.55	0.0	0.04	12.77	0.00	2.288	10.75	0.00	3.8	96.2	0.0	0.13	1.69	0.74	0.45	—	9201	1191	3	0	0	0	0	logfile
✔	7Pii	13437	2023-09-30	2021-08-19	2.68	2.39	—	2.7	0.010	0.78	0.0	0.05	28.29	0.00	2.229	8.23	0.31	4.0	96.0	0.0	-0.89	0.51	0.38	3.69	2.6	0.005	0.68	0.0	0.04	29.08	0.00	2.163	7.64	2.33	2.8	97.2	0.0	1.74	0.98	0.82	0.88	3.28	11192	779	12	245	0	0	0	logfile
✔	7M3L	23656	2023-09-28	2021-03-18	3.2	4.99	—	3.3	0.009	0.97	0.0	0.06	15.05	0.01	1.551	6.78	0.30	9.1	90.6	0.3	-3.19	0.29	0.38	0.40	3.1	0.004	0.72	0.0	0.04	15.15	0.00	2.043	15.39	0.30	7.0	92.8	0.1	-0.73	3.83	0.46	0.76	1.89	6113	775	3	0	0	0	0	logfile
✔	7R5R	14334	2023-09-30	2022-02-11	2.44	3.05	—	2.9	0.004	0.66	0.0	0.04	27.14	0.00	2.226	6.02	0.31	2.5	97.5	0.0	-0.10	0.59	0.39	3.60	2.8	0.004	0.64	0.0	0.04	28.46	0.00	2.160	5.31	1.71	3.6	96.4	0.0	1.95	0.93	0.81	0.87	3.33	11625	779	12	266	0	0	0	logfile

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