The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6Qi8 | 4552 | 2022-05-13 | 2019-01-18 | 3.75 | 3.92 | — | 10.4 | 0.004 | 0.91 | 0.0 | 0.05 | 16.35 | 0.01 | 1.999 | 4.30 | 0.19 | 5.5 | 94.5 | 0.0 | -5.84 | 0.17 | 0.02 | 0.43 | 9.9 | 0.003 | 0.79 | 0.0 | 0.04 | 17.50 | 0.00 | 2.186 | 11.19 | 0.38 | 6.1 | 93.9 | 0.0 | -1.55 | 1.45 | 0.30 | 0.19 | 0.26 | 14789 | 1907 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 5GAK | 3227 | 2022-05-15 | 2015-12-09 | 3.88 | 4.13 | — | 19.0 | 0.006 | 0.94 | 0.0 | 0.06 | 20.85 | 0.01 | 0.816 | 23.97 | 0.26 | 9.2 | 90.2 | 0.7 | -3.81 | 0.21 | 0.02 | 0.28 | 3.8 | 0.006 | 0.94 | 3.0 | 0.05 | 19.64 | 0.01 | 1.918 | 24.95 | 0.40 | 9.8 | 89.8 | 0.4 | -2.82 | 1.75 | 0.32 | 0.23 | 0.19 | 128975 | 6434 | 50 | 3597 | 234 | 0 | 0 | logfile |
✔ | 6REU | 4857 | 2022-05-16 | 2019-04-12 | 4.2 | 4.32 | 4.74 | 30.0 | 0.006 | 0.99 | 0.0 | 0.06 | 15.07 | 0.01 | 1.681 | 9.47 | 0.42 | 5.7 | 94.1 | 0.1 | -4.88 | 0.21 | 0.03 | — | 30.0 | 0.009 | 1.01 | 1.0 | 0.05 | 14.11 | 0.01 | 1.882 | 22.18 | 0.03 | 7.6 | 92.3 | 0.1 | -2.44 | 1.06 | 0.27 | 0.19 | — | 33899 | 4503 | 25 | 0 | 10 | 0 | 0 | logfile |
✔ | 6EU3 | 3958 | 2022-05-17 | 2017-10-27 | 3.3 | 3.38 | — | 6.0 | 0.004 | 1.06 | 0.0 | 0.06 | 11.41 | 0.01 | 1.167 | 5.10 | 0.26 | 12.9 | 86.6 | 0.5 | -5.18 | 0.23 | 0.03 | 0.17 | 3.3 | 0.014 | 1.36 | 4.0 | 0.05 | 15.60 | 0.01 | 1.547 | 24.09 | 0.12 | 14.8 | 84.8 | 0.4 | -3.48 | 1.55 | 0.57 | 0.53 | 0.71 | 38330 | 4825 | 22 | 0 | 7 | 0 | 0 | logfile |
✔ | 6Z5U | 11082 | 2022-05-14 | 2020-05-27 | 3.9 | 4.52 | — | 38.0 | 0.021 | 1.88 | 10.0 | 0.11 | 11.93 | 0.01 | 0.901 | 4.94 | 1.69 | 2.0 | 97.7 | 0.3 | -0.47 | 0.18 | 0.03 | -0.06 | 4.1 | 0.008 | 0.89 | 1.0 | 0.04 | 14.43 | 0.01 | 2.092 | 11.99 | 0.15 | 4.7 | 95.2 | 0.0 | -0.06 | 1.51 | 0.27 | 0.13 | 0.35 | 17880 | 2334 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 5VZL | 8749 | 2022-05-13 | 2017-05-29 | 3.9 | 4.38 | — | 19.0 | 0.006 | 0.96 | 0.0 | 0.05 | 14.28 | 0.01 | 2.216 | 7.76 | 0.25 | 8.4 | 91.6 | 0.0 | -4.13 | 0.31 | 0.03 | -0.03 | 17.0 | 0.010 | 1.23 | 1.0 | 0.05 | 16.68 | 0.01 | 1.239 | 23.62 | 0.25 | 9.1 | 90.9 | 0.0 | -2.51 | 2.13 | 0.41 | 0.22 | 0.62 | 13915 | 1451 | 3 | 115 | 1 | 0 | 0 | logfile |
✔ | 6EU2 | 3957 | 2022-05-17 | 2017-10-27 | 3.4 | 3.45 | — | 6.0 | 0.004 | 1.04 | 0.0 | 0.06 | 11.35 | 0.01 | 1.787 | 5.07 | 0.40 | 13.0 | 86.5 | 0.5 | -5.22 | 0.27 | 0.04 | 0.18 | 3.4 | 0.011 | 1.17 | 3.0 | 0.05 | 15.41 | 0.01 | 1.507 | 19.10 | 0.26 | 11.6 | 88.1 | 0.3 | -2.77 | 1.48 | 0.55 | 0.48 | 0.07 | 38329 | 4825 | 22 | 0 | 7 | 0 | 0 | logfile |
✔ | 3JCE | 6550 | 2022-05-24 | 2015-12-01 | 3.2 | 4.36 | — | 14.0 | 0.008 | 0.88 | 0.0 | 0.04 | 14.83 | 0.00 | 1.106 | 32.70 | 0.47 | 10.4 | 84.8 | 4.8 | -2.93 | 0.33 | 0.04 | 0.16 | 3.2 | 0.007 | 1.06 | 3.0 | 0.05 | 17.20 | 0.01 | 1.577 | 41.40 | 0.19 | 11.5 | 87.2 | 1.3 | -3.17 | 1.17 | 0.63 | 0.30 | 0.33 | 154017 | 6546 | 59 | 4798 | 2 | 0 | 0 | logfile |
✔ | 5M6S | 3451 | 2022-05-12 | 2016-10-25 | 4.8 | 5.27 | — | 6.5 | 0.005 | 0.84 | 0.0 | 0.04 | 27.97 | 0.00 | 2.447 | 24.50 | 44.05 | 7.3 | 89.6 | 3.1 | -5.37 | 0.01 | 0.04 | — | 5.3 | 0.003 | 0.66 | 0.0 | 0.03 | 19.58 | 0.00 | 1.949 | 10.68 | 0.00 | 6.2 | 93.8 | 0.0 | 2.28 | 2.49 | 0.03 | 0.06 | — | 1593 | 98 | 1 | 0 | 0 | 0 | 793 | logfile |
✔ | 3JCD | 6549 | 2022-05-20 | 2015-12-01 | 3.7 | 5.07 | — | 19.0 | 0.006 | 0.83 | 0.0 | 0.04 | 14.69 | 0.00 | 1.289 | 14.69 | 0.02 | 9.6 | 85.8 | 4.5 | -2.43 | 0.34 | 0.04 | 0.30 | 3.4 | 0.007 | 1.25 | 0.0 | 0.06 | 19.90 | 0.01 | 1.449 | 58.45 | 0.37 | 16.4 | 82.3 | 1.3 | -4.16 | 2.42 | 0.69 | 0.40 | 0.16 | 147815 | 5982 | 57 | 4715 | 0 | 0 | 0 | logfile |
✔ | 7PC2 | 13316 | 2022-05-15 | 2021-08-03 | 2.8 | 3.39 | — | 6.5 | 0.033 | 1.53 | 5.0 | 0.05 | 15.16 | 0.01 | 1.809 | 9.01 | 1.49 | 7.8 | 92.2 | 0.0 | -3.81 | 0.43 | 0.05 | -0.14 | 2.9 | 0.014 | 1.28 | 3.0 | 0.05 | 16.66 | 0.01 | 1.526 | 28.54 | 2.98 | 8.1 | 91.9 | 0.0 | -1.71 | 1.41 | 0.57 | 0.35 | 0.46 | 27063 | 3093 | 68 | 0 | 210 | 0 | 0 | logfile |
✔ | 6H5i | 0140 | 2022-05-12 | 2018-07-24 | 3.9 | 3.87 | — | 23.0 | 0.006 | 0.81 | 0.0 | 0.05 | 10.47 | 0.01 | 2.196 | 2.64 | 0.17 | 4.3 | 95.7 | 0.0 | -1.74 | 0.29 | 0.06 | 0.15 | 3.8 | 0.005 | 0.83 | 0.0 | 0.04 | 15.12 | 0.01 | 1.992 | 18.45 | 0.63 | 4.7 | 95.3 | 0.0 | 0.75 | 1.92 | 0.38 | 0.26 | 0.19 | 43900 | 5392 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KFK | 9974 | 2022-05-13 | 2019-07-08 | 4.1 | 4.28 | — | 15.0 | 0.015 | 1.99 | 0.0 | 0.08 | 10.94 | 0.01 | 1.444 | 20.30 | 0.00 | 8.2 | 89.5 | 2.2 | -1.03 | 0.14 | 0.06 | — | 4.2 | 0.004 | 0.96 | 0.0 | 0.05 | 12.82 | 0.00 | 2.072 | 21.35 | 0.00 | 8.3 | 90.8 | 0.9 | -1.45 | 2.85 | 0.24 | 0.31 | — | 65076 | 8844 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TQM | 10555 | 2022-05-17 | 2019-12-16 | 3.8 | 4.34 | 3.78 | 20.0 | 0.014 | 0.98 | 0.0 | 0.12 | 15.01 | 0.01 | 2.083 | 4.06 | 1.40 | 14.5 | 85.5 | 0.0 | -5.95 | 0.30 | 0.07 | 0.30 | 3.8 | 0.011 | 1.11 | 1.0 | 0.04 | 15.94 | 0.00 | 1.851 | 15.53 | 0.43 | 10.5 | 89.5 | 0.0 | -3.67 | 1.07 | 0.36 | 0.21 | 0.31 | 39616 | 2578 | 6 | 0 | 4 | 0 | 19804 | logfile |
✔ | 6LTJ | 0974 | 2022-05-16 | 2020-01-22 | 3.7 | 4.16 | — | 15.0 | 0.010 | 1.08 | 12.0 | 0.07 | 22.08 | 0.01 | 2.173 | 14.06 | 2.63 | 6.4 | 93.3 | 0.3 | -3.67 | 0.46 | 0.08 | 0.04 | 9.6 | 0.010 | 1.10 | 2.0 | 0.05 | 22.65 | 0.01 | 1.911 | 26.45 | 0.09 | 5.2 | 94.8 | 0.0 | -1.05 | 1.51 | 0.59 | 0.27 | 0.44 | 34283 | 3656 | 21 | 238 | 1 | 0 | 0 | logfile |
✘ | 6RBE | 4795 | 2022-05-15 | 2019-04-10 | 3.8 | 3.81 | 4.03 | 5.1 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.23 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.38 | 0.09 | 0.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✔ | 7EGC | 31112 | 2022-05-13 | 2021-03-24 | 3.9 | 3.72 | — | 4.9 | 0.008 | 1.13 | 76.0 | 0.08 | 15.44 | 0.01 | 1.402 | 24.43 | 3.39 | 7.3 | 91.9 | 0.8 | -3.59 | 0.43 | 0.10 | 0.10 | 3.1 | 0.006 | 0.91 | 1.0 | 0.05 | 16.75 | 0.01 | 1.954 | 17.50 | 0.48 | 6.4 | 93.4 | 0.2 | -0.89 | 1.24 | 0.51 | 0.32 | 0.53 | 113129 | 13879 | 63 | 142 | 18 | 0 | 0 | logfile |
✔ | 5L3P | 4001 | 2022-05-21 | 2016-05-24 | 3.7 | 4.66 | — | 16.0 | 0.006 | 0.60 | 0.0 | 0.19 | 12.42 | 0.02 | 2.115 | 7.26 | 0.00 | 8.2 | 89.4 | 2.4 | -1.95 | 0.44 | 0.11 | 0.16 | 3.9 | 0.009 | 1.22 | 4.0 | 0.05 | 18.03 | 0.01 | 1.651 | 53.10 | 0.21 | 10.9 | 88.4 | 0.7 | -2.75 | 2.46 | 0.66 | 0.41 | 0.07 | 149606 | 6419 | 58 | 4704 | 76 | 0 | 0 | logfile |
✔ | 6C9Y | 7438 | 2022-05-16 | 2018-01-29 | 4.25 | 4.33 | — | 9.7 | 0.008 | 1.53 | 5.0 | 0.08 | 13.66 | 0.01 | 2.064 | 6.66 | 5.32 | 7.8 | 90.7 | 1.5 | -4.02 | 0.50 | 0.12 | — | 4.1 | 0.004 | 0.83 | 0.0 | 0.05 | 13.52 | 0.01 | 2.106 | 21.09 | 0.03 | 7.0 | 92.9 | 0.1 | -1.54 | 2.44 | 0.61 | 0.39 | — | 28920 | 3685 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 6H05 | 0108 | 2022-05-17 | 2018-07-06 | 2.9 | 3.15 | — | 3.5 | 0.016 | 1.09 | 0.0 | 0.07 | 9.74 | 0.01 | 0.426 | 17.81 | 0.00 | 8.5 | 91.5 | 0.0 | -5.50 | 0.36 | 0.13 | 0.50 | 3.1 | 0.007 | 1.02 | 0.0 | 0.05 | 15.81 | 0.01 | 1.535 | 23.05 | 2.30 | 5.2 | 94.8 | 0.0 | -1.96 | 1.64 | 0.58 | 0.48 | 0.74 | 44544 | 5664 | 24 | 0 | 0 | 0 | 0 | logfile |