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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6FLQ | 4275 | 2024-03-21 | 2018-01-26 | 3.6 | 3.93 | 3.76 | 40.0 | 0.016 | 1.33 | 0.0 | 0.07 | 15.27 | 0.01 | 1.897 | 5.97 | 1.40 | 10.8 | 89.1 | 0.1 | -4.32 | 0.16 | 0.02 | 0.21 | 3.7 | 0.006 | 1.01 | 1.0 | 0.05 | 17.68 | 0.01 | 1.917 | 21.67 | 3.97 | 11.5 | 88.4 | 0.1 | -1.93 | 2.09 | 0.27 | 0.21 | -0.04 | 30201 | 3868 | 10 | 91 | 3 | 0 | 0 | logfile |
✔ | 7VZ3 | 32219 | 2024-03-17 | 2021-11-15 | 2.46 | 2.36 | 2.43 | 19.0 | 0.009 | 1.08 | 2.0 | 0.07 | 12.80 | 0.01 | 2.203 | 4.37 | 0.26 | 5.4 | 94.5 | 0.1 | -1.44 | 0.12 | 0.02 | 0.32 | 2.2 | 0.005 | 0.92 | 1.0 | 0.05 | 14.34 | 0.01 | 1.998 | 15.23 | 1.79 | 6.2 | 93.7 | 0.1 | -1.36 | 1.71 | 0.22 | 0.15 | 0.55 | 17415 | 2256 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5MSH | 3565 | 2024-03-10 | 2017-01-04 | 4.25 | 3.96 | — | 20.0 | 0.014 | 1.56 | 0.0 | 0.07 | 9.56 | 0.01 | 2.323 | 3.07 | 0.00 | 6.1 | 92.5 | 1.5 | -0.93 | 0.01 | 0.02 | — | 3.8 | 0.003 | 0.78 | 0.0 | 0.05 | 13.12 | 0.01 | 2.193 | 15.96 | 0.00 | 7.5 | 92.5 | 0.0 | -1.32 | 1.97 | 0.04 | 0.15 | — | 4287 | 551 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CHH | 30374 | 2024-03-21 | 2020-07-05 | 3.49 | 2.44 | — | 20.0 | 0.007 | 1.10 | 0.0 | 0.06 | 15.26 | 0.01 | 2.182 | 4.90 | 3.56 | 5.2 | 94.7 | 0.1 | -2.03 | 0.17 | 0.02 | 0.23 | 2.3 | 0.012 | 1.29 | 1.0 | 0.06 | 16.28 | 0.01 | 1.869 | 25.43 | 2.38 | 8.1 | 91.9 | 0.0 | -2.12 | 1.44 | 0.21 | 0.14 | 0.46 | 29029 | 3704 | 17 | 0 | 41 | 0 | 0 | logfile |
✔ | 5GAK | 3227 | 2024-03-15 | 2015-12-09 | 3.88 | 4.13 | — | 19.0 | 0.006 | 0.94 | 0.0 | 0.06 | 25.75 | 0.01 | 0.816 | 23.89 | 0.26 | 9.2 | 90.2 | 0.7 | -3.81 | 0.21 | 0.02 | 0.28 | 3.9 | 0.003 | 0.77 | 0.0 | 0.04 | 24.43 | 0.00 | 1.986 | 20.92 | 2.20 | 8.8 | 90.9 | 0.4 | -2.53 | 1.95 | 0.33 | 0.23 | 0.18 | 128975 | 6434 | 50 | 3597 | 234 | 0 | 0 | logfile |
✘ | 6RBE | 4794 | 2024-03-16 | 2019-04-10 | 3.8 | 4.03 | 3.73 | 40.0 | 0.007 | 1.27 | 0.0 | 0.06 | 23.46 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.25 | 0.02 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✔ | 8P50 | 17435 | 2024-03-16 | 2023-05-23 | 4.04 | 5.40 | 4.05 | 3.9 | 0.004 | 0.88 | 0.0 | 0.05 | 14.21 | 0.01 | 1.901 | 6.41 | 0.00 | 4.7 | 95.3 | 0.0 | -1.98 | 0.62 | 0.03 | — | 3.9 | 0.003 | 0.70 | 0.0 | 0.04 | 13.96 | 0.00 | 1.843 | 8.55 | 0.07 | 3.6 | 96.4 | 0.1 | -0.04 | 1.31 | 0.62 | 0.03 | — | 13714 | 1735 | 3 | 0 | 2 | 0 | 0 | logfile |
✔ | 6Z5U | 11082 | 2024-03-17 | 2020-05-27 | 3.9 | 4.52 | — | 38.0 | 0.021 | 1.88 | 10.0 | 0.11 | 12.69 | 0.01 | 0.901 | 4.89 | 1.69 | 2.0 | 97.7 | 0.3 | -0.47 | 0.18 | 0.03 | -0.06 | 4.5 | 0.003 | 0.74 | 0.0 | 0.04 | 14.85 | 0.00 | 1.975 | 14.50 | 1.99 | 5.6 | 94.4 | 0.0 | -0.84 | 1.64 | 0.30 | 0.20 | 0.61 | 17880 | 2334 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 6EU3 | 3958 | 2024-03-23 | 2017-10-27 | 3.3 | 3.38 | — | 6.0 | 0.004 | 1.06 | 0.0 | 0.06 | 11.41 | 0.01 | 1.167 | 5.05 | 0.26 | 12.9 | 86.6 | 0.5 | -5.18 | 0.23 | 0.03 | 0.17 | 3.3 | 0.003 | 0.81 | 0.0 | 0.04 | 15.10 | 0.00 | 2.016 | 13.52 | 2.04 | 11.5 | 88.3 | 0.3 | -2.44 | 1.48 | 0.54 | 0.49 | 0.40 | 38330 | 4825 | 22 | 0 | 7 | 0 | 0 | logfile |
✔ | 6REU | 4857 | 2024-03-22 | 2019-04-12 | 4.2 | 4.32 | 4.74 | 30.0 | 0.006 | 0.99 | 0.0 | 0.06 | 15.16 | 0.01 | 1.681 | 9.40 | 0.42 | 5.7 | 94.1 | 0.1 | -4.88 | 0.21 | 0.03 | — | 30.0 | 0.005 | 0.95 | 0.0 | 0.05 | 14.27 | 0.01 | 1.794 | 25.43 | 0.03 | 7.4 | 92.5 | 0.1 | -2.18 | 1.53 | 0.27 | 0.20 | — | 33899 | 4503 | 25 | 0 | 10 | 0 | 0 | logfile |
✔ | 5VZL | 8749 | 2024-03-16 | 2017-05-29 | 3.9 | 4.38 | — | 19.0 | 0.006 | 0.96 | 0.0 | 0.05 | 17.27 | 0.01 | 2.216 | 7.72 | 0.25 | 8.4 | 91.6 | 0.0 | -4.13 | 0.31 | 0.03 | -0.03 | 17.0 | 0.002 | 0.61 | 0.0 | 0.04 | 17.87 | 0.00 | 1.222 | 10.54 | 1.58 | 4.2 | 95.8 | 0.0 | -0.94 | 1.05 | 0.36 | 0.16 | 0.61 | 13915 | 1451 | 3 | 115 | 1 | 0 | 0 | logfile |
✘ | 8EAo | 27792 | 2024-03-16 | 2022-08-29 | 3.2 | 4.04 | 3.15 | 20.0 | 0.003 | 0.60 | 0.0 | 0.05 | 14.09 | 0.00 | 2.197 | 10.56 | 0.10 | 3.6 | 96.4 | 0.0 | 1.03 | 0.18 | 0.04 | -0.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71628 | 8964 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6EU2 | 3957 | 2024-03-23 | 2017-10-27 | 3.4 | 3.45 | — | 6.0 | 0.004 | 1.04 | 0.0 | 0.06 | 11.35 | 0.01 | 1.787 | 5.04 | 0.40 | 13.0 | 86.5 | 0.5 | -5.22 | 0.27 | 0.04 | 0.18 | 3.4 | 0.006 | 1.00 | 2.0 | 0.05 | 15.52 | 0.01 | 1.818 | 17.85 | 2.02 | 11.9 | 87.8 | 0.3 | -2.67 | 1.60 | 0.61 | 0.58 | 0.33 | 38329 | 4825 | 22 | 0 | 7 | 0 | 0 | logfile |
✔ | 3JCD | 6549 | 2024-03-24 | 2015-12-01 | 3.7 | 5.07 | — | 19.0 | 0.006 | 0.83 | 0.0 | 0.04 | 22.77 | 0.00 | 1.289 | 14.63 | 0.02 | 9.6 | 85.8 | 4.5 | -2.43 | 0.34 | 0.04 | 0.30 | 3.4 | 0.004 | 1.00 | 0.0 | 0.05 | 25.37 | 0.01 | 1.534 | 38.21 | 2.07 | 13.9 | 84.8 | 1.3 | -3.81 | 2.45 | 0.69 | 0.40 | -0.06 | 147815 | 5982 | 57 | 4715 | 0 | 0 | 0 | logfile |
✔ | 3JCE | 6550 | 2024-03-02 | 2015-12-01 | 3.2 | 4.36 | — | 14.0 | 0.008 | 0.88 | 0.0 | 0.04 | 22.68 | 0.00 | 1.106 | 32.64 | 0.47 | 10.4 | 84.8 | 4.8 | -2.93 | 0.33 | 0.04 | 0.16 | 3.1 | 0.006 | 1.17 | 5.0 | 0.05 | 25.14 | 0.01 | 1.590 | 49.53 | 2.65 | 13.3 | 85.5 | 1.2 | -3.72 | 1.89 | 0.70 | 0.41 | 0.15 | 154017 | 6546 | 59 | 4798 | 2 | 0 | 0 | logfile |
✔ | 5M6S | 3451 | 2024-03-10 | 2016-10-25 | 4.8 | 5.27 | — | 6.5 | 0.005 | 0.84 | 0.0 | 0.04 | 27.97 | 0.00 | 2.447 | 23.24 | 44.05 | 7.3 | 89.6 | 3.1 | -5.37 | 0.01 | 0.04 | — | 5.3 | 0.003 | 0.60 | 0.0 | 0.03 | 17.87 | 0.00 | 1.962 | 10.68 | 0.00 | 7.3 | 92.7 | 0.0 | 2.28 | 2.21 | 0.03 | 0.01 | — | 1593 | 98 | 1 | 0 | 0 | 0 | 793 | logfile |
✔ | 7RTM | 24683 | 2024-03-14 | 2021-08-13 | 3.4 | 3.54 | 3.61 | 20.0 | 0.031 | 3.05 | 44.0 | 0.18 | 16.56 | 0.03 | 1.051 | 1.40 | 2.80 | 6.8 | 93.0 | 0.3 | -1.12 | 0.10 | 0.04 | 0.21 | 3.5 | 0.003 | 0.83 | 0.0 | 0.04 | 15.98 | 0.00 | 2.134 | 10.79 | 2.20 | 5.4 | 94.6 | 0.1 | 0.27 | 4.69 | 0.66 | 0.78 | 1.34 | 9161 | 1142 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7PC2 | 13316 | 2024-03-20 | 2021-08-03 | 2.8 | 3.39 | — | 6.5 | 0.033 | 1.66 | 5.0 | 0.06 | 19.87 | 0.01 | 1.809 | 9.01 | 1.49 | 7.8 | 92.2 | 0.0 | -3.81 | 0.43 | 0.05 | -0.14 | 2.8 | 0.004 | 0.92 | 0.0 | 0.05 | 15.28 | 0.00 | 2.070 | 15.63 | 2.61 | 6.8 | 93.2 | 0.0 | -1.15 | 1.37 | 0.58 | 0.35 | 0.25 | 27063 | 3093 | 68 | 0 | 210 | 0 | 0 | logfile |
✔ | 7V66 | 31736 | 2024-03-22 | 2021-08-19 | 1.89 | 1.85 | — | 5.2 | 0.006 | 1.02 | 0.0 | 0.07 | 12.14 | 0.01 | 1.929 | 1.89 | 2.07 | 1.9 | 98.0 | 0.0 | 1.97 | 0.09 | 0.05 | 1.38 | 4.1 | 0.006 | 1.44 | 8.0 | 0.04 | 15.60 | 0.01 | 2.233 | 16.30 | 1.64 | 4.1 | 95.9 | 0.0 | 3.25 | 1.24 | 0.14 | 0.12 | -0.77 | 33216 | 4128 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KFK | 9974 | 2024-03-12 | 2019-07-08 | 4.1 | 4.28 | — | 15.0 | 0.015 | 1.99 | 0.0 | 0.08 | 10.94 | 0.01 | 1.444 | 20.13 | 0.00 | 8.2 | 89.5 | 2.2 | -1.03 | 0.14 | 0.06 | — | 4.2 | 0.004 | 0.91 | 0.0 | 0.05 | 12.96 | 0.00 | 2.067 | 21.77 | 0.00 | 7.8 | 91.3 | 0.9 | -1.51 | 2.73 | 0.24 | 0.31 | — | 65076 | 8844 | 22 | 0 | 0 | 0 | 0 | logfile |