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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8J04 | 35883 | 2024-04-14 | 2023-04-09 | 2.7 | 3.05 | 2.75 | 3.0 | 0.003 | 0.51 | 0.0 | 0.03 | 17.20 | 0.00 | 2.033 | 9.02 | 0.93 | 3.6 | 96.4 | 0.0 | 2.30 | 0.48 | 0.69 | 2.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30824 | 1900 | 12 | 0 | 8 | 0 | 15244 | logfile |
✔ | 8EX9 | 28655 | 2024-04-05 | 2022-10-25 | 2.96 | 3.27 | 3.00 | 3.2 | 0.003 | 0.49 | 0.0 | 0.03 | 24.07 | 0.00 | 2.200 | 13.65 | 0.79 | 4.3 | 95.7 | 0.0 | -1.52 | 0.60 | 0.71 | 4.83 | 3.2 | 0.004 | 0.58 | 0.0 | 0.03 | 24.00 | 0.00 | 2.154 | 13.79 | 4.76 | 4.9 | 95.1 | 0.0 | -0.69 | 0.22 | 0.62 | 0.72 | 4.21 | 4199 | 166 | 4 | 139 | 0 | 0 | 0 | logfile |
✔ | 6W7W | 21573 | 2024-04-12 | 2020-03-19 | 3.9 | 4.46 | — | 4.0 | 0.002 | 0.49 | 0.0 | 0.03 | 23.62 | 0.00 | 2.156 | 10.70 | 0.12 | 4.1 | 95.9 | 0.0 | -2.82 | 0.91 | 0.83 | 1.20 | 4.0 | 0.005 | 0.73 | 0.0 | 0.04 | 23.78 | 0.00 | 2.082 | 22.89 | 4.69 | 7.6 | 92.4 | 0.0 | -1.22 | 0.60 | 0.92 | 0.85 | 1.31 | 26883 | 1047 | 10 | 871 | 0 | 0 | 0 | logfile |
✔ | 7YGD | 33816 | 2024-04-06 | 2022-07-11 | 3.41 | 4.13 | 3.42 | 3.3 | 0.002 | 0.49 | 0.0 | 0.03 | 24.63 | 0.00 | 2.100 | 14.25 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.81 | — | 3.3 | 0.007 | 0.75 | 0.0 | 0.04 | 25.30 | 0.01 | 1.824 | 32.50 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.50 | 0.91 | 0.88 | — | 8313 | 0 | 3 | 389 | 6 | 0 | 0 | logfile |
✔ | 7Y41 | 33599 | 2024-04-15 | 2022-06-13 | 4.1 | 4.02 | 3.07 | 3.4 | 0.004 | 0.63 | 0.0 | 0.03 | 24.41 | 0.01 | 1.204 | 15.20 | 0.00 | 4.4 | 95.6 | 0.0 | -0.39 | 0.87 | 0.86 | — | 3.4 | 0.005 | 0.63 | 0.0 | 0.04 | 23.73 | 0.00 | 1.023 | 14.66 | 0.04 | 4.8 | 95.2 | 0.0 | -0.45 | 1.47 | 0.88 | 0.87 | — | 97056 | 3529 | 46 | 3237 | 411 | 0 | 0 | logfile |
✔ | 6ZoJ | 11320 | 2024-04-11 | 2020-07-07 | 2.8 | 3.07 | — | 3.0 | 0.002 | 0.51 | 0.0 | 0.03 | 21.18 | 0.00 | 1.694 | 4.40 | 1.39 | 2.3 | 97.7 | 0.0 | 0.76 | 0.80 | 0.85 | 3.50 | 2.9 | 0.003 | 0.57 | 0.0 | 0.04 | 21.72 | 0.00 | 1.130 | 5.47 | 2.86 | 2.9 | 97.1 | 0.0 | 0.77 | 2.45 | 0.81 | 0.88 | 3.35 | 75783 | 4914 | 45 | 1704 | 169 | 0 | 0 | logfile |
✔ | 7JGG | 22326 | 2024-04-05 | 2020-07-19 | 4.88 | 8.00 | — | 7.7 | 0.002 | 0.46 | 0.0 | 0.03 | 13.22 | 0.00 | 1.988 | 54.49 | 0.00 | 3.3 | 96.5 | 0.2 | 1.67 | 0.66 | 0.64 | — | 7.5 | 0.002 | 0.44 | 0.0 | 0.03 | 12.76 | 0.00 | 1.973 | 75.99 | 0.00 | 4.7 | 95.3 | 0.0 | 1.92 | 1.72 | 0.66 | 0.70 | — | 4210 | 506 | 1 | 0 | 0 | 0 | 28 | logfile |
✘ | 6SiH | 10210 | 2024-04-16 | 2019-08-09 | 4.7 | 5.01 | — | 4.7 | 0.005 | 0.54 | 0.0 | 0.03 | 12.61 | 0.00 | 1.931 | 8.52 | 0.00 | 5.9 | 94.1 | 0.0 | -1.62 | 0.89 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37310 | 4880 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FKQ | 29253 | 2024-04-14 | 2022-12-21 | 2.76 | 3.11 | 2.87 | 3.0 | 0.003 | 0.55 | 0.0 | 0.03 | 20.66 | 0.00 | 2.001 | 1.93 | 0.02 | 1.1 | 98.9 | 0.0 | 1.47 | 0.77 | 0.82 | 3.34 | 3.0 | 0.006 | 0.61 | 0.0 | 0.04 | 20.91 | 0.00 | 1.966 | 5.67 | 1.48 | 2.1 | 97.9 | 0.0 | 0.87 | 0.41 | 0.79 | 0.88 | 3.16 | 93805 | 6882 | 52 | 1784 | 53 | 0 | 0 | logfile |
✔ | 6W7N | 21572 | 2024-04-17 | 2020-03-19 | 3.4 | 3.72 | — | 3.6 | 0.002 | 0.46 | 0.0 | 0.03 | 22.81 | 0.00 | 1.907 | 8.12 | 0.08 | 8.2 | 91.5 | 0.3 | -4.03 | 0.78 | 0.78 | 1.44 | 3.6 | 0.007 | 0.78 | 0.0 | 0.04 | 23.04 | 0.01 | 2.075 | 13.25 | 5.28 | 12.6 | 87.0 | 0.4 | -2.52 | 1.26 | 0.81 | 0.83 | 1.34 | 42287 | 1660 | 15 | 1372 | 0 | 0 | 0 | logfile |
✔ | 6NTS | 0510 | 2024-04-07 | 2019-01-30 | 3.63 | 4.31 | 2.98 | 3.6 | 0.016 | 0.51 | 0.0 | 0.03 | 13.24 | 0.00 | 1.917 | 2.06 | 0.00 | 3.8 | 96.2 | 0.0 | -2.08 | 0.89 | 0.77 | 0.59 | 3.7 | 0.002 | 0.64 | 0.0 | 0.04 | 15.06 | 0.00 | 2.088 | 8.13 | 0.72 | 2.8 | 97.2 | 0.0 | 0.80 | 2.30 | 0.92 | 0.85 | 1.08 | 9956 | 1240 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 8C99 | 16506 | 2024-04-13 | 2023-01-21 | 3.29 | 3.69 | 3.33 | 3.3 | 0.002 | 0.39 | 0.0 | 0.03 | 22.33 | 0.00 | 1.957 | 5.35 | 0.00 | 4.7 | 95.3 | 0.0 | 0.97 | 0.79 | 0.79 | 2.26 | 3.3 | 0.006 | 0.66 | 0.0 | 0.04 | 22.76 | 0.00 | 2.068 | 12.62 | 2.00 | 8.6 | 91.4 | 0.0 | -0.99 | 0.55 | 0.81 | 0.85 | 2.21 | 27988 | 987 | 11 | 945 | 0 | 0 | 0 | logfile |
✔ | 6GC7 | 4382 | 2024-04-05 | 2018-04-17 | 4.3 | 4.85 | — | 4.4 | 0.003 | 0.67 | 0.0 | 0.03 | 22.57 | 0.00 | 2.251 | 5.08 | 0.28 | 5.9 | 93.9 | 0.1 | -4.27 | 0.76 | 0.61 | — | 4.4 | 0.008 | 0.75 | 0.0 | 0.04 | 23.50 | 0.01 | 1.960 | 31.37 | 0.00 | 10.4 | 89.4 | 0.2 | -2.53 | 1.69 | 0.91 | 0.87 | — | 54410 | 1738 | 17 | 1901 | 0 | 0 | 0 | logfile |
✔ | 8C96 | 16503 | 2024-04-17 | 2023-01-21 | 4.43 | 5.03 | 4.86 | 4.4 | 0.001 | 0.36 | 0.0 | 0.03 | 22.54 | 0.00 | 1.928 | 6.57 | 0.08 | 3.8 | 96.1 | 0.1 | 0.57 | 0.83 | 0.79 | — | 4.4 | 0.006 | 0.74 | 0.0 | 0.04 | 24.03 | 0.01 | 1.999 | 39.58 | 0.00 | 8.3 | 91.7 | 0.0 | -1.84 | 0.94 | 0.84 | 0.85 | — | 44214 | 1607 | 16 | 1475 | 0 | 0 | 0 | logfile |
✔ | 8C97 | 16504 | 2024-04-15 | 2023-01-21 | 4.07 | 4.81 | 4.16 | 4.0 | 0.002 | 0.39 | 0.0 | 0.03 | 23.09 | 0.00 | 1.904 | 5.95 | 0.00 | 4.6 | 95.2 | 0.2 | 0.72 | 0.80 | 0.75 | — | 4.0 | 0.004 | 0.62 | 0.0 | 0.03 | 23.84 | 0.00 | 1.806 | 22.26 | 0.00 | 8.3 | 91.4 | 0.3 | -1.49 | 0.75 | 0.80 | 0.83 | — | 36163 | 1077 | 12 | 1292 | 0 | 0 | 0 | logfile |
✔ | 8HAG | 34588 | 2024-04-09 | 2022-10-26 | 3.2 | 3.77 | 3.22 | 2.6 | 0.003 | 0.56 | 0.0 | 0.03 | 24.83 | 0.00 | 2.220 | 10.62 | 0.00 | 1.7 | 98.3 | 0.0 | 2.13 | 0.85 | 0.78 | 0.67 | 2.3 | 0.003 | 0.56 | 0.0 | 0.03 | 26.10 | 0.00 | 2.215 | 9.83 | 0.90 | 1.7 | 98.3 | 0.0 | 2.19 | 1.19 | 0.89 | 0.87 | 1.86 | 16367 | 1284 | 11 | 294 | 0 | 0 | 0 | logfile |
✔ | 7Y6F | 33639 | 2024-04-14 | 2022-06-20 | 2.7 | 2.68 | 2.68 | 2.8 | 0.003 | 0.62 | 0.0 | 0.03 | 15.05 | 0.00 | 1.807 | 9.87 | 0.00 | 1.7 | 98.3 | 0.0 | 4.11 | 0.71 | 0.83 | 1.79 | 2.8 | 0.003 | 0.68 | 0.0 | 0.03 | 18.67 | 0.00 | 2.113 | 4.75 | 0.75 | 0.4 | 99.6 | 0.0 | 4.57 | 0.30 | 0.71 | 0.84 | 1.11 | 31427 | 3772 | 48 | 0 | 59 | 0 | 0 | logfile |
✔ | 6X35 | 22018 | 2024-04-06 | 2020-05-21 | 4.2 | 4.14 | — | 4.2 | 0.001 | 0.37 | 0.0 | 0.03 | 8.42 | 0.00 | 2.202 | 3.37 | 0.05 | 1.8 | 98.1 | 0.0 | -1.11 | 0.52 | 0.67 | — | 4.1 | 0.002 | 0.61 | 0.0 | 0.04 | 11.41 | 0.00 | 2.182 | 7.29 | 0.01 | 2.5 | 97.5 | 0.0 | 1.11 | 1.69 | 0.57 | 0.72 | — | 111888 | 14740 | 16 | 0 | 1432 | 0 | 0 | logfile |
✔ | 7M4W | 23668 | 2024-04-12 | 2021-03-22 | 2.55 | 1.74 | — | 1.6 | 0.006 | 0.55 | 0.0 | 0.03 | 22.94 | 0.01 | 1.760 | 3.08 | 0.02 | 2.8 | 97.0 | 0.2 | 1.38 | 0.77 | 0.74 | 3.81 | 1.5 | 0.008 | 0.89 | 0.0 | 0.05 | 23.08 | 0.01 | 1.642 | 5.06 | 2.52 | 3.5 | 96.4 | 0.1 | 0.40 | 0.91 | 0.79 | 0.76 | 3.81 | 137923 | 5518 | 76 | 4373 | 195 | 797 | 0 | logfile |
✔ | 6GC4 | 4380 | 2024-04-12 | 2018-04-17 | 4.3 | 4.54 | — | 4.3 | 0.003 | 0.77 | 0.0 | 0.03 | 22.72 | 0.01 | 2.252 | 4.11 | 0.39 | 6.9 | 92.9 | 0.2 | -3.77 | 0.70 | 0.60 | — | 4.3 | 0.007 | 0.82 | 0.0 | 0.04 | 23.39 | 0.01 | 1.985 | 27.69 | 0.04 | 11.8 | 88.0 | 0.1 | -2.89 | 1.04 | 0.81 | 0.79 | — | 80165 | 2836 | 26 | 2705 | 0 | 0 | 0 | logfile |