Table showing results for April 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XMF	22257	2021-04-01	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	16.46	0.00	2.246	8.52	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.61	0.0	0.04	16.74	0.00	2.147	14.15	0.00	9.6	90.4	0.0	-0.76	1.15	0.71	0.75	3.17	7382	627	3	109	1	0	0	logfile
✔	6PC6	20297	2021-04-01	2019-06-16	2.5	3.08	—	2.9	0.008	0.52	0.0	0.03	12.79	0.02	1.930	2.89	2.11	6.4	93.5	0.1	-3.59	0.73	0.88	4.50	2.9	0.004	0.62	0.0	0.03	14.67	0.01	1.954	8.04	3.29	6.2	93.7	0.1	-0.70	0.91	0.74	0.90	4.39	72127	963	8	3015	1	0	0	logfile
✔	6VWN	21422	2021-04-02	2020-02-20	3.4	3.71	—	3.2	0.002	0.58	0.0	0.03	14.91	0.00	1.951	7.11	3.85	4.3	95.7	0.0	-3.14	0.83	0.82	1.13	3.2	0.003	0.57	0.0	0.03	15.62	0.00	1.935	14.45	0.00	6.1	93.9	0.0	-1.14	1.28	0.84	0.86	1.34	140036	5341	57	4580	55	0	0	logfile
✔	7A8P	11679	2021-04-01	2020-08-30	3.5	3.61	3.44	3.6	0.004	0.57	0.0	0.03	16.07	0.00	2.165	2.80	0.63	2.2	97.8	0.0	0.97	0.73	0.78	1.97	3.6	0.003	0.56	0.0	0.04	15.36	0.01	2.258	7.91	0.13	1.9	98.1	0.0	2.57	1.01	0.74	0.79	2.30	7305	911	1	0	1	0	0	logfile
✔	6V3D	21033	2021-04-02	2019-11-25	2.95	3.39	—	3.2	0.002	0.47	0.0	0.03	14.48	0.01	1.698	5.90	0.04	2.8	97.1	0.1	-1.93	0.85	0.86	2.47	3.2	0.006	0.67	0.0	0.04	15.30	0.01	1.809	6.74	0.00	4.9	95.0	0.1	-0.59	1.20	0.87	0.90	3.34	89040	3117	45	3007	108	231	0	logfile
✔	6VWM	21421	2021-04-02	2020-02-20	3.4	3.74	—	3.2	0.003	0.59	0.0	0.03	14.75	0.00	1.963	7.00	1.73	5.0	95.0	0.0	-3.11	0.82	0.83	1.68	3.2	0.005	0.67	0.0	0.04	16.18	0.01	1.864	17.85	0.02	8.0	92.0	0.0	-1.69	2.56	0.83	0.86	1.66	140044	5342	57	4580	53	0	0	logfile
✔	6XMG	22258	2021-04-01	2020-06-30	4.8	8.26	—	3.9	0.002	0.53	0.0	0.03	16.06	0.00	2.187	10.57	0.00	6.7	93.3	0.0	-2.01	0.90	0.74	—	3.4	0.004	0.78	0.0	0.04	19.06	0.01	2.042	44.77	0.00	11.8	88.2	0.0	-1.98	2.05	0.90	0.78	—	8361	638	4	154	1	0	0	logfile
✔	6WFQ	21652	2021-04-01	2020-04-03	3.9	4.88	3.77	3.9	0.002	0.49	0.0	0.03	16.66	0.00	2.265	8.11	0.80	4.3	95.7	0.0	-2.49	0.84	0.78	0.76	4.0	0.003	0.69	0.0	0.04	17.12	0.00	2.197	13.35	0.00	6.1	93.9	0.0	0.24	0.81	0.85	0.80	0.76	4164	447	4	30	0	0	0	logfile
✔	7DBP	30161	2021-04-02	2020-10-21	4.5	5.32	—	4.3	0.003	0.45	0.0	0.03	27.36	0.00	2.226	8.54	0.57	4.4	94.9	0.7	-0.94	0.87	0.76	—	4.3	0.006	0.68	0.0	0.04	30.56	0.00	2.138	31.47	0.00	4.4	95.6	0.0	1.17	2.58	0.89	0.83	—	13801	837	11	350	0	0	0	logfile
✔	6K3o	9910	2021-04-03	2019-05-21	3.4	3.86	—	3.8	0.003	0.56	0.0	0.03	14.46	0.00	1.077	15.94	0.00	3.8	96.2	0.0	-1.52	0.79	0.82	3.15	3.8	0.003	0.68	0.0	0.03	15.58	0.00	2.192	6.60	0.00	2.1	97.9	0.0	4.17	0.52	0.75	0.79	2.16	31508	3790	48	0	36	0	0	logfile
✔	6PCT	20307	2021-04-01	2019-06-18	2.8	3.01	—	2.9	0.015	0.62	2.0	0.03	12.90	0.02	1.891	2.94	2.50	6.3	93.6	0.1	-3.70	0.66	0.85	4.28	2.9	0.003	0.73	0.0	0.03	13.75	0.01	2.068	8.30	0.13	6.0	93.8	0.2	-1.83	0.30	0.68	0.88	4.81	72198	964	8	3015	1	0	0	logfile
✔	6ZoJ	11320	2021-04-02	2020-07-07	2.8	3.07	—	3.0	0.002	0.51	0.0	0.03	14.31	0.00	1.694	4.34	1.39	2.3	97.7	0.0	0.76	0.80	0.85	3.50	2.9	0.008	0.76	0.0	0.05	15.13	0.01	1.182	5.24	0.00	3.9	96.1	0.0	0.22	2.45	0.82	0.88	3.56	75783	4914	45	1704	169	0	0	logfile
✔	6PCR	20305	2021-04-01	2019-06-18	2.5	3.04	—	2.9	0.006	0.48	0.0	0.03	12.80	0.02	1.808	2.70	2.36	5.2	94.6	0.2	-3.36	0.72	0.89	4.33	2.9	0.005	0.66	0.0	0.04	14.69	0.01	1.940	6.72	2.49	6.2	93.8	0.0	-0.51	1.24	0.73	0.91	4.51	72166	967	8	3015	1	0	0	logfile
✔	6PC7	20298	2021-04-01	2019-06-16	2.5	3.01	—	2.9	0.006	0.51	0.0	0.03	12.72	0.02	1.954	2.83	2.23	6.2	93.7	0.1	-3.93	0.66	0.85	3.71	2.9	0.006	0.68	0.0	0.04	14.62	0.01	1.926	7.85	4.34	7.4	92.4	0.2	-1.09	1.25	0.67	0.88	3.81	72146	964	8	3015	1	0	0	logfile
✔	6ZoK	11321	2021-04-04	2020-07-07	2.8	2.96	2.77	2.9	0.003	0.52	0.0	0.03	14.36	0.00	1.989	4.02	1.48	2.2	97.8	0.0	0.55	0.74	0.86	4.30	2.9	0.004	0.59	0.0	0.04	14.75	0.00	1.927	4.15	0.04	2.6	97.4	0.0	0.69	1.57	0.76	0.90	4.26	50192	2970	26	1232	110	0	0	logfile
✘	6VLZ	21233	2021-04-07	2020-01-27	2.97	3.50	—	3.3	0.002	0.42	1.0	0.03	12.04	0.00	1.115	7.44	0.89	10.8	87.5	1.7	-2.83	0.70	0.61	1.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	174849	14904	107	2561	243	0	0	logfile
✘	6VMi	21242	2021-04-07	2020-01-28	2.96	3.46	—	3.3	0.002	0.45	3.0	0.03	12.07	0.00	1.253	7.62	0.84	10.8	87.5	1.7	-2.79	0.70	0.60	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	176217	14904	107	2592	283	0	0	logfile
✔	6SiH	10210	2021-04-04	2019-08-09	4.7	5.01	—	4.7	0.005	0.54	0.0	0.03	12.61	0.00	1.931	8.36	0.00	5.9	94.1	0.0	-1.62	0.89	0.79	—	4.7	0.003	0.58	0.0	0.04	13.47	0.00	2.024	12.22	0.00	4.8	95.2	0.0	1.35	1.59	0.88	0.78	—	37310	4880	10	0	0	0	0	logfile
✔	6WCB	21605	2021-04-02	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.003	0.49	0.0	0.04	13.91	0.00	2.053	3.53	0.00	1.7	98.3	0.0	3.39	1.32	0.57	0.80	2.09	11647	734	6	0	7	40	5904	logfile
✔	6L54	0837	2021-04-02	2019-10-22	3.43	3.58	—	3.5	0.002	0.49	0.0	0.03	7.60	0.00	1.978	60.56	0.79	8.8	91.2	0.0	-3.87	0.77	0.72	1.74	3.5	0.002	0.59	0.0	0.04	12.05	0.00	1.933	66.81	0.10	11.6	88.3	0.0	-1.51	0.77	0.81	0.79	1.80	20387	2608	3	0	2	0	857	logfile

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