Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N95	24250	2022-07-03	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.003	0.89	0.0	0.00	3.97	0.00	2.552	3.52	0.00	14.4	85.4	0.2	-2.79	1.72	0.84	0.81	—	7299	2433	2	0	0	0	0	logfile
✔	5G2Y	3332	2022-07-03	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.01	0.0	0.05	23.66	0.01	1.957	72.02	0.00	0.0	0.0	0.0	—	3.26	0.89	0.78	—	13494	0	1	630	0	0	0	logfile
✔	6UES	20755	2022-07-03	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	7JSH	22454	2022-07-03	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.004	1.19	0.0	0.04	13.17	0.00	1.948	19.40	0.00	27.4	72.5	0.2	-5.14	6.11	0.74	0.62	—	7916	1904	8	15	0	0	0	logfile
✔	5A8L	3099	2022-07-03	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	9.01	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.007	0.91	0.0	0.03	16.17	0.01	1.948	15.58	0.38	8.5	90.6	1.0	-1.53	1.40	0.22	0.61	0.47	12264	624	9	347	0	0	0	logfile
✘	6PC6	20297	2022-07-04	2019-06-16	2.5	3.08	—	2.9	0.006	0.42	0.0	0.02	12.59	0.00	1.213	2.96	2.11	6.3	93.7	0.0	-3.58	0.73	0.88	4.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72127	963	8	3015	1	0	0	logfile
✔	5G2X	3331	2022-07-04	2016-04-16	3.8	3.49	—	3.4	0.001	0.31	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.004	0.76	0.0	0.04	17.15	0.01	1.994	28.48	0.45	18.5	80.5	1.1	-4.42	1.71	0.79	0.64	0.68	19072	487	3	704	0	0	0	logfile
✔	7SAM	24952	2022-07-03	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.006	0.88	0.0	0.04	22.86	0.01	1.817	83.53	0.00	0.0	0.0	0.0	—	5.89	0.95	0.86	—	5399	0	1	169	0	0	1802	logfile
✔	7JSE	22451	2022-07-03	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.50	—	3.8	0.005	0.96	0.0	0.08	14.35	0.00	2.201	6.17	0.00	15.6	84.4	0.0	-2.03	2.71	0.83	0.74	—	13288	3168	24	32	0	0	0	logfile
✘	6PCS	20306	2022-07-04	2019-06-18	2.8	3.17	—	3.0	0.003	0.34	0.0	0.02	12.50	0.00	1.215	3.34	1.31	5.7	94.1	0.1	-3.87	0.66	0.86	3.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72169	967	8	3015	1	0	0	logfile
✘	6WYV	21969	2022-07-04	2020-05-13	2.75	3.18	—	3.0	0.003	0.35	2.0	0.02	12.67	0.00	1.214	3.91	1.57	7.1	92.8	0.1	-4.66	0.70	0.84	3.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72194	971	9	3015	1	0	0	logfile
✘	6PC8	20299	2022-07-04	2019-06-16	2.9	3.26	—	3.1	0.003	0.35	0.0	0.02	12.55	0.00	1.215	3.27	2.62	7.2	92.7	0.1	-4.11	0.71	0.86	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72169	967	8	3015	1	0	0	logfile
✘	6TNF	10531	2022-07-03	2019-12-07	3.8	2.90	3.67	2.7	0.007	1.29	0.0	0.02	9.22	0.01	1.416	8.40	0.00	17.8	81.5	0.7	-5.32	0.60	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9559	2206	5	0	66	0	0	logfile
✘	6PC5	20296	2022-07-04	2019-06-16	2.7	3.05	—	2.9	0.003	0.34	2.0	0.02	12.36	0.00	1.214	2.75	1.57	6.1	93.8	0.1	-3.49	0.73	0.88	5.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72206	971	9	3015	1	0	0	logfile
✘	6PCH	20300	2022-07-04	2019-06-17	2.9	3.23	—	3.1	0.003	0.34	0.0	0.02	12.57	0.00	1.216	3.92	2.23	7.9	92.0	0.1	-4.23	0.61	0.79	3.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72134	964	8	3015	1	0	0	logfile
✘	6PCQ	20304	2022-07-04	2019-06-18	2.6	3.06	—	2.9	0.006	0.42	0.0	0.02	12.60	0.00	1.215	3.13	1.84	6.8	93.2	0.0	-4.00	0.66	0.84	4.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72125	963	8	3015	1	0	0	logfile
✘	6i9R	4434	2022-07-06	2018-11-25	3.9	4.02	3.89	4.0	0.004	0.60	0.0	0.03	13.37	0.01	1.148	3.67	0.01	3.8	96.1	0.0	-3.40	0.79	0.81	1.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	100274	8198	62	1562	139	0	0	logfile
✘	6WQN	21872	2022-07-05	2020-04-29	2.9	2.43	2.85	2.8	0.003	0.49	3.0	0.03	14.72	0.00	1.184	9.08	2.31	2.9	97.1	0.0	-3.39	0.75	0.85	3.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80700	2646	28	2798	1	0	0	logfile
✔	6WCC	21606	2022-07-03	2020-03-30	3.24	3.27	—	3.3	0.003	0.51	0.0	0.03	15.73	0.00	2.025	4.39	2.26	0.8	99.2	0.0	1.46	0.53	0.76	1.58	3.3	0.003	0.52	0.0	0.03	15.73	0.00	2.212	7.06	0.32	2.6	97.4	0.0	4.20	0.73	0.52	0.78	1.78	11629	734	6	0	5	12	5908	logfile
✔	6WQQ	21873	2022-07-05	2020-04-29	3.1	2.53	3.04	3.0	0.002	0.45	2.0	0.03	14.51	0.00	2.203	3.56	0.36	3.9	96.1	0.0	-4.07	0.73	0.80	2.74	3.0	0.003	0.62	0.0	0.04	16.34	0.01	2.008	5.61	0.45	5.9	94.1	0.0	-2.84	1.18	0.74	0.81	2.67	81134	2671	28	2809	1	0	0	logfile

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