Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TKP	25977	2022-12-14	2022-01-17	4.6	7.57	4.97	4.4	0.019	2.20	0.0	0.00	6.68	0.01	2.352	0.12	0.00	4.2	94.5	1.3	-0.50	0.60	0.63	—	4.4	0.004	0.83	0.0	0.00	5.46	0.00	2.080	13.25	0.00	10.0	89.8	0.2	0.34	0.82	0.82	0.84	—	20228	5056	27	0	0	0	0	logfile
✔	5G2Y	3332	2022-12-13	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.01	0.0	0.05	23.66	0.01	1.957	72.02	0.00	0.0	0.0	0.0	—	3.26	0.89	0.78	—	13494	0	1	630	0	0	0	logfile
✔	6UES	20755	2022-12-11	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	7JSH	22454	2022-12-11	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.004	1.19	0.0	0.04	13.17	0.00	1.948	19.40	0.00	27.4	72.5	0.2	-5.14	6.11	0.74	0.62	—	7916	1904	8	15	0	0	0	logfile
✔	5G2X	3331	2022-12-14	2016-04-16	3.8	3.49	—	3.4	0.001	0.31	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.004	0.83	0.0	0.04	19.26	0.01	1.964	33.23	0.23	18.1	80.7	1.3	-5.17	1.94	0.80	0.66	0.62	19072	487	3	704	0	0	0	logfile
✔	5A8L	3099	2022-12-12	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	9.01	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.006	0.97	0.0	0.05	17.64	0.01	1.991	23.78	0.57	11.9	87.0	1.1	-2.68	1.53	0.23	0.63	0.73	12264	624	9	347	0	0	0	logfile
✔	7UVT	26816	2022-12-12	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	16.13	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.71	0.0	0.04	18.04	0.01	1.910	21.51	0.00	0.0	0.0	0.0	—	0.47	0.77	0.76	—	12409	0	1	386	0	0	4149	logfile
✔	6PCQ	20304	2022-12-14	2019-06-18	2.6	3.06	—	2.9	0.008	0.45	0.0	0.02	12.70	0.02	1.976	3.12	1.84	6.8	93.2	0.0	-4.00	0.66	0.84	4.35	2.9	0.006	0.71	0.0	0.04	15.03	0.01	2.109	9.81	2.76	7.7	92.1	0.2	-1.66	1.73	0.67	0.86	4.16	72125	963	8	3015	1	0	0	logfile
✔	6PCS	20306	2022-12-14	2019-06-18	2.8	3.17	—	3.0	0.005	0.38	0.0	0.02	12.64	0.02	1.658	3.34	1.31	5.7	94.1	0.1	-3.87	0.66	0.86	3.98	3.0	0.006	0.71	0.0	0.04	14.88	0.01	1.975	8.69	4.84	7.1	92.6	0.3	-1.52	1.27	0.67	0.89	3.42	72169	967	8	3015	1	0	0	logfile
✔	7XSL	33426	2022-12-12	2022-05-14	3.84	4.65	3.83	3.7	0.002	0.47	0.0	0.02	16.20	0.00	1.935	8.02	0.00	0.0	0.0	0.0	—	0.91	0.77	—	3.8	0.007	0.70	0.0	0.04	18.30	0.01	1.809	34.17	0.00	0.0	0.0	0.0	—	1.02	0.92	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7XSK	33425	2022-12-12	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	15.94	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.006	0.66	0.0	0.04	18.19	0.01	1.742	27.91	0.00	0.0	0.0	0.0	—	1.08	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	6PCH	20300	2022-12-14	2019-06-17	2.9	3.23	—	3.1	0.005	0.38	0.0	0.02	12.69	0.02	1.702	3.92	2.23	7.9	92.0	0.1	-4.23	0.61	0.79	3.30	3.1	0.007	0.80	0.0	0.04	15.51	0.01	1.964	12.18	5.52	9.8	90.0	0.2	-2.28	0.50	0.63	0.83	2.45	72134	964	8	3015	1	0	0	logfile
✔	7SAM	24952	2022-12-11	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.006	0.88	0.0	0.04	22.86	0.01	1.817	83.53	0.00	0.0	0.0	0.0	—	5.89	0.95	0.86	—	5399	0	1	169	0	0	1802	logfile
✔	6PC5	20296	2022-12-14	2019-06-16	2.7	3.05	—	2.9	0.006	0.49	2.0	0.02	12.54	0.02	1.965	2.75	1.57	6.1	93.8	0.1	-3.49	0.73	0.88	5.14	2.9	0.006	0.64	2.0	0.04	14.40	0.01	2.001	7.33	3.80	6.3	93.5	0.2	-1.01	1.24	0.74	0.91	4.41	72206	971	9	3015	1	0	0	logfile
✔	7JSE	22451	2022-12-13	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.50	—	3.8	0.005	0.96	0.0	0.08	14.35	0.00	2.201	6.17	0.00	15.6	84.4	0.0	-2.03	2.71	0.83	0.74	—	13288	3168	24	32	0	0	0	logfile
✔	6WYV	21969	2022-12-14	2020-05-13	2.75	3.18	—	3.0	0.006	0.43	2.0	0.02	12.86	0.02	1.925	3.89	1.57	7.1	92.8	0.1	-4.66	0.70	0.84	3.35	3.0	0.007	0.74	2.0	0.04	15.28	0.01	1.961	11.25	5.90	8.7	91.2	0.1	-1.95	1.52	0.71	0.88	3.03	72194	971	9	3015	1	0	0	logfile
✔	6W7W	21573	2022-12-15	2020-03-19	3.9	4.46	—	4.0	0.002	0.49	0.0	0.03	15.50	0.00	2.156	10.72	0.12	4.1	95.9	0.0	-2.82	0.91	0.83	1.20	4.0	0.007	0.80	0.0	0.04	16.98	0.01	2.085	26.98	0.47	8.0	92.0	0.0	-1.57	0.61	0.92	0.85	1.34	26883	1047	10	871	0	0	0	logfile
✔	7JGG	22326	2022-12-11	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.6	0.003	0.54	0.0	0.03	12.79	0.00	1.898	99.07	0.00	5.9	94.1	0.0	0.89	1.75	0.67	0.71	—	4210	506	1	0	0	0	28	logfile
✔	6W77	21569	2022-12-22	2020-03-18	3.6	3.44	—	3.3	0.002	0.53	0.0	0.03	14.96	0.00	2.084	9.36	0.12	6.1	93.7	0.2	-3.22	0.73	0.67	0.91	3.3	0.006	0.86	0.0	0.04	16.81	0.01	1.852	18.02	0.87	12.2	87.6	0.2	-2.34	2.05	0.76	0.71	1.02	47940	1949	18	1519	0	0	0	logfile
✔	6K3o	9910	2022-12-16	2019-05-21	3.4	3.86	—	3.8	0.003	0.56	0.0	0.03	14.46	0.00	1.077	16.09	0.00	3.8	96.2	0.0	-1.52	0.79	0.82	3.15	3.8	0.004	0.73	0.0	0.03	17.05	0.00	1.627	5.96	0.75	2.1	97.9	0.0	3.83	0.50	0.76	0.81	2.46	31508	3790	48	0	36	0	0	logfile

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