Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PCH	20300	2023-04-27	2019-06-17	2.9	3.23	—	3.1	0.005	0.40	0.0	0.02	12.74	0.03	1.702	3.90	2.23	7.9	92.0	0.1	-4.23	0.61	0.79	3.30	3.1	0.005	0.75	0.0	0.04	15.49	0.01	1.995	11.55	5.52	8.1	91.7	0.2	-2.21	0.50	0.63	0.83	1.98	72134	964	8	3015	1	0	0	logfile
✔	6WYV	21969	2023-04-27	2020-05-13	2.75	3.18	—	3.0	0.006	0.51	1.0	0.02	13.15	0.03	1.925	3.89	1.57	7.1	92.8	0.1	-4.66	0.70	0.84	3.35	3.0	0.004	0.69	1.0	0.03	15.47	0.01	2.001	11.08	4.98	7.6	92.3	0.1	-1.76	1.51	0.71	0.88	3.05	72194	971	9	3015	1	0	0	logfile
✔	6PCS	20306	2023-04-27	2019-06-18	2.8	3.17	—	3.0	0.005	0.40	0.0	0.02	12.69	0.03	1.658	3.31	1.31	5.7	94.1	0.1	-3.87	0.66	0.86	3.98	3.0	0.006	0.72	0.0	0.04	15.09	0.01	1.964	8.80	4.06	7.2	92.5	0.3	-1.60	1.27	0.67	0.89	3.52	72169	967	8	3015	1	0	0	logfile
✔	6PC5	20296	2023-04-27	2019-06-16	2.7	3.05	—	2.9	0.006	0.50	1.0	0.02	12.77	0.03	1.965	2.72	1.57	6.1	93.8	0.1	-3.49	0.73	0.88	5.14	2.9	0.005	0.67	1.0	0.04	14.66	0.01	1.955	7.37	3.54	6.2	93.6	0.2	-1.00	1.24	0.74	0.91	4.41	72206	971	9	3015	1	0	0	logfile
✔	6PC6	20297	2023-04-27	2019-06-16	2.5	3.08	—	2.9	0.008	0.56	0.0	0.02	13.08	0.03	1.930	2.91	2.11	6.3	93.7	0.0	-3.58	0.73	0.88	4.50	2.9	0.005	0.67	0.0	0.03	14.86	0.01	1.949	7.94	3.68	6.6	93.2	0.2	-0.81	0.91	0.74	0.90	4.30	72127	963	8	3015	1	0	0	logfile
✔	7SAM	24952	2023-04-20	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.88	0.0	0.04	22.84	0.01	1.820	82.61	0.00	0.0	0.0	0.0	—	5.78	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	5A8L	3099	2023-04-22	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	8.96	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.005	0.82	0.0	0.04	17.26	0.01	2.034	19.30	1.33	10.7	88.1	1.1	-2.35	1.54	0.23	0.63	0.72	12264	624	9	347	0	0	0	logfile
✔	7UVT	26816	2023-04-22	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	16.13	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.70	0.0	0.04	17.94	0.01	1.892	21.35	0.00	0.0	0.0	0.0	—	0.48	0.77	0.76	—	12409	0	1	386	0	0	4149	logfile
✔	7JSH	22454	2023-04-20	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.30	0.0	0.05	13.69	0.01	1.942	27.17	0.00	31.8	67.9	0.3	-5.48	6.11	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	6PCQ	20304	2023-04-27	2019-06-18	2.6	3.06	—	2.9	0.008	0.46	0.0	0.02	12.76	0.03	1.976	3.10	1.84	6.8	93.2	0.0	-4.00	0.66	0.84	4.35	2.9	0.006	0.73	0.0	0.04	15.08	0.01	2.032	9.59	3.95	7.7	92.1	0.2	-1.58	1.72	0.67	0.86	3.88	72125	963	8	3015	1	0	0	logfile
✔	7XSL	33426	2023-04-22	2022-05-14	3.84	4.65	3.83	3.7	0.002	0.47	0.0	0.02	16.20	0.00	1.935	8.02	0.00	0.0	0.0	0.0	—	0.91	0.77	—	3.8	0.006	0.70	0.0	0.04	18.31	0.01	1.810	33.53	0.00	0.0	0.0	0.0	—	1.02	0.92	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7XSK	33425	2023-04-22	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	15.94	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.007	0.68	0.0	0.04	18.66	0.01	1.750	33.29	0.00	0.0	0.0	0.0	—	1.90	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7JSE	22451	2023-04-22	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.50	—	3.9	0.007	1.10	0.0	0.09	14.86	0.00	2.156	11.87	0.00	20.1	79.9	0.0	-3.21	2.77	0.87	0.64	—	13288	3168	24	32	0	0	0	logfile
✔	6UES	20755	2023-04-20	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.14	0.01	1.785	36.43	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	5G2X	3331	2023-04-24	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.005	0.87	0.0	0.04	19.17	0.01	1.949	36.81	0.45	21.6	77.1	1.3	-5.19	1.94	0.80	0.66	0.50	19072	487	3	704	0	0	0	logfile
✔	6PC7	20298	2023-04-27	2019-06-16	2.5	3.01	—	2.9	0.006	0.51	0.0	0.03	12.98	0.03	1.954	2.85	2.23	6.2	93.7	0.1	-3.93	0.66	0.85	3.71	2.9	0.006	0.71	0.0	0.04	14.71	0.01	1.999	7.54	4.34	6.8	93.0	0.2	-1.16	1.25	0.67	0.88	4.01	72146	964	8	3015	1	0	0	logfile
✔	6PCR	20305	2023-04-27	2019-06-18	2.5	3.04	—	2.9	0.006	0.47	0.0	0.03	13.21	0.03	1.808	2.72	2.36	5.2	94.6	0.2	-3.36	0.72	0.89	4.33	2.9	0.005	0.69	0.0	0.03	14.91	0.01	1.905	6.82	2.36	6.1	93.9	0.0	-0.53	1.23	0.72	0.91	4.47	72166	967	8	3015	1	0	0	logfile
✔	6PCT	20307	2023-04-27	2019-06-18	2.8	3.01	—	2.9	0.006	0.43	2.0	0.03	12.76	0.03	1.891	2.96	2.50	6.3	93.6	0.1	-3.70	0.66	0.85	4.28	2.9	0.005	0.70	0.0	0.04	14.72	0.01	2.058	8.14	3.81	6.8	93.1	0.1	-1.02	0.41	0.68	0.88	4.35	72198	964	8	3015	1	0	0	logfile
✔	8E2H	27836	2023-04-21	2022-08-15	2.3	2.41	2.27	2.4	0.003	0.60	0.0	0.03	15.28	0.00	1.980	6.85	0.52	1.1	98.9	0.0	1.61	0.65	0.82	4.36	2.4	0.004	0.58	0.0	0.04	16.12	0.00	1.971	7.33	2.78	0.8	99.2	0.0	2.63	0.93	0.65	0.83	4.00	10412	656	1	0	0	40	5280	logfile
✔	7oBQ	12799	2023-04-24	2021-04-23	3.9	4.22	—	3.9	0.003	0.48	0.0	0.03	12.88	0.00	2.106	9.19	2.63	2.7	97.3	0.0	1.55	0.76	0.79	0.82	3.9	0.003	0.72	0.0	0.04	15.48	0.00	1.906	16.54	0.73	4.1	95.9	0.0	0.38	0.65	0.77	0.81	1.12	16668	1642	11	165	39	0	0	logfile

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