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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6WYV | 21969 | 2022-05-15 | 2020-05-13 | 2.75 | 3.18 | — | 3.0 | 0.006 | 0.43 | 2.0 | 0.02 | 12.86 | 0.02 | 1.925 | 3.89 | 1.57 | 7.1 | 92.8 | 0.1 | -4.66 | 0.70 | 0.84 | 3.35 | 3.0 | 0.005 | 0.67 | 2.0 | 0.04 | 15.13 | 0.01 | 1.975 | 10.78 | 4.72 | 7.5 | 92.4 | 0.1 | -1.80 | 1.51 | 0.71 | 0.88 | 2.97 | 72194 | 971 | 9 | 3015 | 1 | 0 | 0 | logfile |
✔ | 7JSH | 22454 | 2022-05-12 | 2020-08-14 | 4.4 | 7.07 | — | 17.0 | 0.001 | 0.20 | 0.0 | 0.02 | 8.81 | 0.00 | 2.581 | 0.00 | 0.00 | 13.1 | 83.7 | 3.2 | -3.27 | 0.49 | 0.25 | — | 5.3 | 0.004 | 1.19 | 0.0 | 0.04 | 13.17 | 0.00 | 1.948 | 19.40 | 0.00 | 27.4 | 72.5 | 0.2 | -5.14 | 6.11 | 0.74 | 0.62 | — | 7916 | 1904 | 8 | 15 | 0 | 0 | 0 | logfile |
✔ | 5A8L | 3099 | 2022-05-13 | 2015-07-16 | 3.8 | 3.60 | — | 3.5 | 0.004 | 0.67 | 0.0 | 0.02 | 12.36 | 0.00 | 1.435 | 9.01 | 0.95 | 10.3 | 86.8 | 2.9 | -2.06 | 0.18 | 0.43 | 0.47 | 3.5 | 0.007 | 0.91 | 0.0 | 0.03 | 16.17 | 0.01 | 1.948 | 15.58 | 0.38 | 8.5 | 90.6 | 1.0 | -1.53 | 1.40 | 0.22 | 0.61 | 0.47 | 12264 | 624 | 9 | 347 | 0 | 0 | 0 | logfile |
✔ | 6UES | 20755 | 2022-05-12 | 2019-09-23 | 3.7 | 3.94 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 17.15 | 0.00 | 2.100 | 7.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.76 | — | 3.3 | 0.007 | 0.87 | 0.0 | 0.04 | 21.10 | 0.01 | 1.792 | 36.17 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.34 | 0.88 | 0.83 | — | 3842 | 0 | 1 | 119 | 0 | 0 | 1291 | logfile |
✔ | 7SAM | 24952 | 2022-05-12 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 13.28 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.006 | 0.88 | 0.0 | 0.04 | 22.86 | 0.01 | 1.817 | 83.53 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.89 | 0.95 | 0.86 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 6PC5 | 20296 | 2022-05-15 | 2019-06-16 | 2.7 | 3.05 | — | 2.9 | 0.006 | 0.49 | 2.0 | 0.02 | 12.54 | 0.02 | 1.965 | 2.75 | 1.57 | 6.1 | 93.8 | 0.1 | -3.49 | 0.73 | 0.88 | 5.14 | 2.9 | 0.005 | 0.63 | 2.0 | 0.03 | 14.51 | 0.01 | 1.988 | 7.45 | 4.19 | 6.3 | 93.5 | 0.2 | -1.07 | 1.24 | 0.73 | 0.91 | 4.17 | 72206 | 971 | 9 | 3015 | 1 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2022-05-14 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.31 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.004 | 0.76 | 0.0 | 0.04 | 17.15 | 0.01 | 1.994 | 28.48 | 0.45 | 18.5 | 80.5 | 1.1 | -4.42 | 1.71 | 0.79 | 0.64 | 0.68 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 6PCT | 20307 | 2022-05-15 | 2019-06-18 | 2.8 | 3.01 | — | 2.9 | 0.006 | 0.52 | 2.0 | 0.03 | 12.86 | 0.02 | 1.891 | 2.99 | 2.50 | 6.3 | 93.6 | 0.1 | -3.70 | 0.66 | 0.85 | 4.28 | 2.9 | 0.005 | 0.67 | 0.0 | 0.04 | 14.69 | 0.01 | 2.086 | 8.30 | 3.68 | 6.6 | 93.3 | 0.1 | -0.91 | 0.41 | 0.68 | 0.89 | 4.30 | 72198 | 964 | 8 | 3015 | 1 | 0 | 0 | logfile |
✘ | 6X36 | 22019 | 2022-05-17 | 2020-05-21 | 4.7 | 4.72 | 5.52 | 4.6 | 0.002 | 0.53 | 0.0 | 0.03 | 10.40 | 0.00 | 2.228 | 5.93 | 0.00 | 2.2 | 97.8 | 0.0 | 0.96 | 0.76 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100164 | 13692 | 12 | 0 | 1376 | 0 | 0 | logfile |
✔ | 6PC7 | 20298 | 2022-05-15 | 2019-06-16 | 2.5 | 3.01 | — | 2.9 | 0.006 | 0.50 | 0.0 | 0.03 | 12.79 | 0.02 | 1.954 | 2.86 | 2.23 | 6.2 | 93.7 | 0.1 | -3.93 | 0.66 | 0.85 | 3.71 | 2.9 | 0.004 | 0.61 | 0.0 | 0.03 | 14.37 | 0.01 | 2.018 | 7.85 | 3.55 | 6.8 | 93.0 | 0.2 | -0.97 | 1.25 | 0.66 | 0.88 | 3.95 | 72146 | 964 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6X34 | 22017 | 2022-05-17 | 2020-05-21 | 4.7 | 6.14 | 4.99 | 4.8 | 0.001 | 0.41 | 0.0 | 0.03 | 9.38 | 0.00 | 2.258 | 3.87 | 0.61 | 1.6 | 98.4 | 0.0 | -2.99 | 0.74 | 0.66 | — | 4.8 | 0.003 | 0.65 | 0.0 | 0.04 | 9.64 | 0.00 | 2.095 | 12.85 | 0.00 | 4.0 | 96.0 | 0.0 | 0.40 | 0.92 | 0.80 | 0.80 | — | 97888 | 13956 | 12 | 0 | 1320 | 0 | 0 | logfile |
✔ | 6ZoJ | 11320 | 2022-05-15 | 2020-07-07 | 2.8 | 3.07 | — | 3.0 | 0.002 | 0.51 | 0.0 | 0.03 | 14.31 | 0.00 | 1.694 | 4.49 | 1.39 | 2.3 | 97.7 | 0.0 | 0.76 | 0.80 | 0.85 | 3.50 | 2.9 | 0.007 | 0.69 | 0.0 | 0.04 | 16.02 | 0.01 | 1.068 | 5.53 | 2.64 | 3.5 | 96.5 | 0.0 | 0.48 | 2.45 | 0.81 | 0.87 | 3.31 | 75783 | 4914 | 45 | 1704 | 169 | 0 | 0 | logfile |
✔ | 6ZoK | 11321 | 2022-05-18 | 2020-07-07 | 2.8 | 2.96 | 2.77 | 2.9 | 0.003 | 0.52 | 0.0 | 0.03 | 14.36 | 0.00 | 1.989 | 4.11 | 1.48 | 2.2 | 97.8 | 0.0 | 0.55 | 0.74 | 0.86 | 4.30 | 2.9 | 0.007 | 0.68 | 0.0 | 0.04 | 16.03 | 0.01 | 1.814 | 4.24 | 2.85 | 2.9 | 97.1 | 0.0 | 0.44 | 1.56 | 0.75 | 0.88 | 4.00 | 50192 | 2970 | 26 | 1232 | 110 | 0 | 0 | logfile |
✔ | 7JiL | 22345 | 2022-05-16 | 2020-07-23 | 2.8 | 3.31 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.03 | 14.70 | 0.00 | 1.987 | 6.79 | 2.15 | 9.9 | 90.0 | 0.1 | -3.96 | 0.82 | 0.84 | 2.44 | 3.2 | 0.007 | 0.70 | 0.0 | 0.04 | 15.87 | 0.01 | 1.790 | 6.52 | 5.13 | 12.3 | 87.6 | 0.1 | -2.42 | 0.39 | 0.75 | 0.79 | 2.78 | 133098 | 5314 | 64 | 4327 | 325 | 36 | 0 | logfile |
✔ | 6W6K | 21558 | 2022-05-18 | 2020-03-17 | 3.6 | 3.84 | — | 3.7 | 0.002 | 0.47 | 0.0 | 0.03 | 14.66 | 0.00 | 2.113 | 10.39 | 0.00 | 6.9 | 93.1 | 0.0 | -4.28 | 0.70 | 0.59 | 0.52 | 3.7 | 0.007 | 0.92 | 1.0 | 0.04 | 17.11 | 0.01 | 1.510 | 21.81 | 0.44 | 12.4 | 87.6 | 0.1 | -3.12 | 0.82 | 0.74 | 0.67 | 0.42 | 46934 | 1873 | 19 | 1534 | 1 | 0 | 0 | logfile |
✔ | 6Z5L | 11079 | 2022-05-25 | 2020-05-26 | 3.8 | 4.08 | — | 3.9 | 0.004 | 0.63 | 0.0 | 0.03 | 15.41 | 0.00 | 1.986 | 3.72 | 0.00 | 5.2 | 94.8 | 0.0 | 1.60 | 0.53 | 0.68 | 0.31 | 3.9 | 0.004 | 0.73 | 0.0 | 0.04 | 17.30 | 0.00 | 2.134 | 14.41 | 0.27 | 4.6 | 95.4 | 0.0 | 2.36 | 1.29 | 0.58 | 0.86 | 1.00 | 154880 | 20080 | 80 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KoD | 22972 | 2022-05-14 | 2020-11-08 | 1.655 | 2.30 | — | 1.9 | 0.001 | 0.33 | 0.0 | 0.03 | 8.49 | 0.00 | 2.288 | 0.80 | 0.00 | 1.1 | 98.9 | 0.0 | 6.14 | 0.91 | 0.91 | 8.16 | 2.0 | 0.005 | 0.49 | 0.0 | 0.04 | 13.81 | 0.00 | 1.858 | 2.53 | 0.27 | 0.6 | 99.4 | 0.0 | 5.26 | 0.58 | 0.88 | 0.94 | 8.02 | 68186 | 4128 | 48 | 0 | 0 | 1727 | 32643 | logfile |
✔ | 6W7W | 21573 | 2022-05-15 | 2020-03-19 | 3.9 | 4.46 | — | 4.0 | 0.002 | 0.49 | 0.0 | 0.03 | 15.50 | 0.00 | 2.156 | 10.72 | 0.12 | 4.1 | 95.9 | 0.0 | -2.82 | 0.91 | 0.83 | 1.20 | 4.0 | 0.007 | 0.80 | 0.0 | 0.04 | 17.06 | 0.01 | 2.075 | 26.17 | 1.29 | 7.7 | 92.3 | 0.0 | -1.52 | 0.61 | 0.92 | 0.85 | 1.34 | 26883 | 1047 | 10 | 871 | 0 | 0 | 0 | logfile |
✔ | 7JGG | 22326 | 2022-05-12 | 2020-07-19 | 4.88 | 8.00 | — | 7.7 | 0.002 | 0.46 | 0.0 | 0.03 | 13.22 | 0.00 | 1.988 | 54.49 | 0.00 | 3.3 | 96.5 | 0.2 | 1.67 | 0.66 | 0.64 | — | 7.5 | 0.002 | 0.46 | 0.0 | 0.03 | 12.61 | 0.00 | 1.976 | 80.83 | 0.00 | 4.5 | 95.5 | 0.0 | 1.72 | 1.70 | 0.67 | 0.69 | — | 4210 | 506 | 1 | 0 | 0 | 0 | 28 | logfile |
✔ | 6W77 | 21569 | 2022-05-18 | 2020-03-18 | 3.6 | 3.44 | — | 3.3 | 0.002 | 0.53 | 0.0 | 0.03 | 14.96 | 0.00 | 2.084 | 9.36 | 0.12 | 6.1 | 93.7 | 0.2 | -3.22 | 0.73 | 0.67 | 0.91 | 3.3 | 0.005 | 0.73 | 0.0 | 0.04 | 16.22 | 0.01 | 1.738 | 15.78 | 0.43 | 9.8 | 90.0 | 0.2 | -1.80 | 1.76 | 0.76 | 0.70 | 0.99 | 47940 | 1949 | 18 | 1519 | 0 | 0 | 0 | logfile |