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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PCH | 20300 | 2023-04-27 | 2019-06-17 | 2.9 | 3.23 | — | 3.1 | 0.005 | 0.40 | 0.0 | 0.02 | 12.74 | 0.03 | 1.702 | 3.90 | 2.23 | 7.9 | 92.0 | 0.1 | -4.23 | 0.61 | 0.79 | 3.30 | 3.1 | 0.005 | 0.75 | 0.0 | 0.04 | 15.49 | 0.01 | 1.995 | 11.55 | 5.52 | 8.1 | 91.7 | 0.2 | -2.21 | 0.50 | 0.63 | 0.83 | 1.98 | 72134 | 964 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6WYV | 21969 | 2023-04-27 | 2020-05-13 | 2.75 | 3.18 | — | 3.0 | 0.006 | 0.51 | 1.0 | 0.02 | 13.15 | 0.03 | 1.925 | 3.89 | 1.57 | 7.1 | 92.8 | 0.1 | -4.66 | 0.70 | 0.84 | 3.35 | 3.0 | 0.004 | 0.69 | 1.0 | 0.03 | 15.47 | 0.01 | 2.001 | 11.08 | 4.98 | 7.6 | 92.3 | 0.1 | -1.76 | 1.51 | 0.71 | 0.88 | 3.05 | 72194 | 971 | 9 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6PCS | 20306 | 2023-04-27 | 2019-06-18 | 2.8 | 3.17 | — | 3.0 | 0.005 | 0.40 | 0.0 | 0.02 | 12.69 | 0.03 | 1.658 | 3.31 | 1.31 | 5.7 | 94.1 | 0.1 | -3.87 | 0.66 | 0.86 | 3.98 | 3.0 | 0.006 | 0.72 | 0.0 | 0.04 | 15.09 | 0.01 | 1.964 | 8.80 | 4.06 | 7.2 | 92.5 | 0.3 | -1.60 | 1.27 | 0.67 | 0.89 | 3.52 | 72169 | 967 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6PC5 | 20296 | 2023-04-27 | 2019-06-16 | 2.7 | 3.05 | — | 2.9 | 0.006 | 0.50 | 1.0 | 0.02 | 12.77 | 0.03 | 1.965 | 2.72 | 1.57 | 6.1 | 93.8 | 0.1 | -3.49 | 0.73 | 0.88 | 5.14 | 2.9 | 0.005 | 0.67 | 1.0 | 0.04 | 14.66 | 0.01 | 1.955 | 7.37 | 3.54 | 6.2 | 93.6 | 0.2 | -1.00 | 1.24 | 0.74 | 0.91 | 4.41 | 72206 | 971 | 9 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6PC6 | 20297 | 2023-04-27 | 2019-06-16 | 2.5 | 3.08 | — | 2.9 | 0.008 | 0.56 | 0.0 | 0.02 | 13.08 | 0.03 | 1.930 | 2.91 | 2.11 | 6.3 | 93.7 | 0.0 | -3.58 | 0.73 | 0.88 | 4.50 | 2.9 | 0.005 | 0.67 | 0.0 | 0.03 | 14.86 | 0.01 | 1.949 | 7.94 | 3.68 | 6.6 | 93.2 | 0.2 | -0.81 | 0.91 | 0.74 | 0.90 | 4.30 | 72127 | 963 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 7SAM | 24952 | 2023-04-20 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 13.28 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.007 | 0.88 | 0.0 | 0.04 | 22.84 | 0.01 | 1.820 | 82.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.78 | 0.96 | 0.87 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 5A8L | 3099 | 2023-04-22 | 2015-07-16 | 3.8 | 3.60 | — | 3.5 | 0.004 | 0.67 | 0.0 | 0.02 | 12.36 | 0.00 | 1.435 | 8.96 | 0.95 | 10.3 | 86.8 | 2.9 | -2.06 | 0.18 | 0.43 | 0.47 | 3.5 | 0.005 | 0.82 | 0.0 | 0.04 | 17.26 | 0.01 | 2.034 | 19.30 | 1.33 | 10.7 | 88.1 | 1.1 | -2.35 | 1.54 | 0.23 | 0.63 | 0.72 | 12264 | 624 | 9 | 347 | 0 | 0 | 0 | logfile |
✔ | 7UVT | 26816 | 2023-04-22 | 2022-05-02 | 3.9 | 4.17 | 4.00 | 4.1 | 0.001 | 0.41 | 0.0 | 0.02 | 16.13 | 0.00 | 1.897 | 6.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.76 | 0.74 | — | 4.1 | 0.006 | 0.70 | 0.0 | 0.04 | 17.94 | 0.01 | 1.892 | 21.35 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.48 | 0.77 | 0.76 | — | 12409 | 0 | 1 | 386 | 0 | 0 | 4149 | logfile |
✔ | 7JSH | 22454 | 2023-04-20 | 2020-08-14 | 4.4 | 7.07 | — | 17.0 | 0.001 | 0.20 | 0.0 | 0.02 | 8.81 | 0.00 | 2.581 | 0.00 | 0.00 | 13.1 | 83.7 | 3.2 | -3.27 | 0.49 | 0.25 | — | 5.3 | 0.005 | 1.30 | 0.0 | 0.05 | 13.69 | 0.01 | 1.942 | 27.17 | 0.00 | 31.8 | 67.9 | 0.3 | -5.48 | 6.11 | 0.73 | 0.61 | — | 7916 | 1904 | 8 | 15 | 0 | 0 | 0 | logfile |
✔ | 6PCQ | 20304 | 2023-04-27 | 2019-06-18 | 2.6 | 3.06 | — | 2.9 | 0.008 | 0.46 | 0.0 | 0.02 | 12.76 | 0.03 | 1.976 | 3.10 | 1.84 | 6.8 | 93.2 | 0.0 | -4.00 | 0.66 | 0.84 | 4.35 | 2.9 | 0.006 | 0.73 | 0.0 | 0.04 | 15.08 | 0.01 | 2.032 | 9.59 | 3.95 | 7.7 | 92.1 | 0.2 | -1.58 | 1.72 | 0.67 | 0.86 | 3.88 | 72125 | 963 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 7XSL | 33426 | 2023-04-22 | 2022-05-14 | 3.84 | 4.65 | 3.83 | 3.7 | 0.002 | 0.47 | 0.0 | 0.02 | 16.20 | 0.00 | 1.935 | 8.02 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.77 | — | 3.8 | 0.006 | 0.70 | 0.0 | 0.04 | 18.31 | 0.01 | 1.810 | 33.53 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.02 | 0.92 | 0.83 | — | 12467 | 0 | 1 | 388 | 0 | 0 | 4168 | logfile |
✔ | 7XSK | 33425 | 2023-04-22 | 2022-05-14 | 3.53 | 4.49 | 3.42 | 3.4 | 0.001 | 0.44 | 0.0 | 0.02 | 15.94 | 0.00 | 1.970 | 6.98 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.76 | — | 3.4 | 0.007 | 0.68 | 0.0 | 0.04 | 18.66 | 0.01 | 1.750 | 33.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.90 | 0.91 | 0.83 | — | 12467 | 0 | 1 | 388 | 0 | 0 | 4168 | logfile |
✔ | 7JSE | 22451 | 2023-04-22 | 2020-08-14 | 4.6 | 5.13 | — | 4.2 | 0.001 | 0.38 | 0.0 | 0.02 | 10.51 | 0.00 | 2.425 | 0.00 | 0.00 | 11.4 | 88.0 | 0.6 | -2.68 | 0.79 | 0.50 | — | 3.9 | 0.007 | 1.10 | 0.0 | 0.09 | 14.86 | 0.00 | 2.156 | 11.87 | 0.00 | 20.1 | 79.9 | 0.0 | -3.21 | 2.77 | 0.87 | 0.64 | — | 13288 | 3168 | 24 | 32 | 0 | 0 | 0 | logfile |
✔ | 6UES | 20755 | 2023-04-20 | 2019-09-23 | 3.7 | 3.94 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 17.15 | 0.00 | 2.100 | 7.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.76 | — | 3.3 | 0.007 | 0.87 | 0.0 | 0.04 | 21.14 | 0.01 | 1.785 | 36.43 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.34 | 0.88 | 0.83 | — | 3842 | 0 | 1 | 119 | 0 | 0 | 1291 | logfile |
✔ | 5G2X | 3331 | 2023-04-24 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.32 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.005 | 0.87 | 0.0 | 0.04 | 19.17 | 0.01 | 1.949 | 36.81 | 0.45 | 21.6 | 77.1 | 1.3 | -5.19 | 1.94 | 0.80 | 0.66 | 0.50 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 6PC7 | 20298 | 2023-04-27 | 2019-06-16 | 2.5 | 3.01 | — | 2.9 | 0.006 | 0.51 | 0.0 | 0.03 | 12.98 | 0.03 | 1.954 | 2.85 | 2.23 | 6.2 | 93.7 | 0.1 | -3.93 | 0.66 | 0.85 | 3.71 | 2.9 | 0.006 | 0.71 | 0.0 | 0.04 | 14.71 | 0.01 | 1.999 | 7.54 | 4.34 | 6.8 | 93.0 | 0.2 | -1.16 | 1.25 | 0.67 | 0.88 | 4.01 | 72146 | 964 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6PCR | 20305 | 2023-04-27 | 2019-06-18 | 2.5 | 3.04 | — | 2.9 | 0.006 | 0.47 | 0.0 | 0.03 | 13.21 | 0.03 | 1.808 | 2.72 | 2.36 | 5.2 | 94.6 | 0.2 | -3.36 | 0.72 | 0.89 | 4.33 | 2.9 | 0.005 | 0.69 | 0.0 | 0.03 | 14.91 | 0.01 | 1.905 | 6.82 | 2.36 | 6.1 | 93.9 | 0.0 | -0.53 | 1.23 | 0.72 | 0.91 | 4.47 | 72166 | 967 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6PCT | 20307 | 2023-04-27 | 2019-06-18 | 2.8 | 3.01 | — | 2.9 | 0.006 | 0.43 | 2.0 | 0.03 | 12.76 | 0.03 | 1.891 | 2.96 | 2.50 | 6.3 | 93.6 | 0.1 | -3.70 | 0.66 | 0.85 | 4.28 | 2.9 | 0.005 | 0.70 | 0.0 | 0.04 | 14.72 | 0.01 | 2.058 | 8.14 | 3.81 | 6.8 | 93.1 | 0.1 | -1.02 | 0.41 | 0.68 | 0.88 | 4.35 | 72198 | 964 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 8E2H | 27836 | 2023-04-21 | 2022-08-15 | 2.3 | 2.41 | 2.27 | 2.4 | 0.003 | 0.60 | 0.0 | 0.03 | 15.28 | 0.00 | 1.980 | 6.85 | 0.52 | 1.1 | 98.9 | 0.0 | 1.61 | 0.65 | 0.82 | 4.36 | 2.4 | 0.004 | 0.58 | 0.0 | 0.04 | 16.12 | 0.00 | 1.971 | 7.33 | 2.78 | 0.8 | 99.2 | 0.0 | 2.63 | 0.93 | 0.65 | 0.83 | 4.00 | 10412 | 656 | 1 | 0 | 0 | 40 | 5280 | logfile |
✔ | 7oBQ | 12799 | 2023-04-24 | 2021-04-23 | 3.9 | 4.22 | — | 3.9 | 0.003 | 0.48 | 0.0 | 0.03 | 12.88 | 0.00 | 2.106 | 9.19 | 2.63 | 2.7 | 97.3 | 0.0 | 1.55 | 0.76 | 0.79 | 0.82 | 3.9 | 0.003 | 0.72 | 0.0 | 0.04 | 15.48 | 0.00 | 1.906 | 16.54 | 0.73 | 4.1 | 95.9 | 0.0 | 0.38 | 0.65 | 0.77 | 0.81 | 1.12 | 16668 | 1642 | 11 | 165 | 39 | 0 | 0 | logfile |