Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DST	27688	2023-09-27	2022-07-22	3.2	2.71	2.73	3.4	0.046	2.10	0.0	0.03	22.27	0.00	2.205	41.47	0.00	0.0	0.0	0.0	—	0.44	0.57	—	2.4	0.136	9.30	191.0	0.34	28.93	0.03	1.065	133.79	0.00	0.0	0.0	0.0	—	2.16	0.55	0.80	—	3078	0	54	0	270	0	0	logfile
✔	6PoM	20416	2023-09-28	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.29	0.0	0.06	21.60	0.01	1.918	61.40	0.00	0.0	0.0	0.0	—	1.76	0.75	0.80	—	4937	0	2	230	0	0	0	logfile
✔	7ZiR	14738	2023-09-27	2022-04-08	2.5	2.51	2.04	2.7	0.002	0.34	0.0	0.03	9.02	0.00	2.317	1.65	0.00	2.0	98.0	0.0	-3.82	0.48	0.90	7.46	2.7	0.003	0.46	0.0	0.04	12.12	0.00	2.316	0.28	0.00	2.9	97.1	0.0	-3.83	1.03	0.50	0.93	7.96	2120	255	10	0	0	50	0	logfile
✔	7LQi	23487	2023-09-29	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.84	5.0	0.14	22.95	0.01	1.918	120.77	3.33	46.5	53.5	0.0	-7.05	1.54	0.65	0.83	2.52	8400	800	100	0	0	0	0	logfile
✔	7Y5W	33627	2023-09-29	2022-06-17	3.5	4.54	3.56	3.7	0.003	0.53	0.0	0.03	27.68	0.00	2.102	12.41	0.00	2.0	98.0	0.0	2.53	0.81	0.70	0.94	3.7	0.005	0.89	0.0	0.04	28.98	0.01	2.069	23.02	0.40	2.0	98.0	0.0	0.85	0.95	0.90	0.85	0.98	8811	579	10	202	0	0	0	logfile
✔	7X58	33011	2023-09-29	2022-03-04	3.93	4.15	—	3.9	0.003	0.56	0.0	0.03	27.31	0.00	2.221	7.16	0.00	0.9	99.1	0.0	0.68	0.86	0.80	1.58	3.9	0.005	0.74	0.0	0.04	29.86	0.00	2.200	15.92	0.99	3.1	96.9	0.0	2.24	1.39	0.88	0.84	0.66	9775	596	10	242	0	0	0	logfile
✔	6WCB	21605	2023-09-30	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.003	0.50	0.0	0.04	15.55	0.00	2.072	3.71	0.16	1.7	98.3	0.0	3.40	1.29	0.54	0.79	2.46	11647	734	6	0	7	40	5904	logfile
✔	6XMF	22257	2023-09-28	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	16.46	0.00	2.246	8.60	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.60	0.0	0.03	17.74	0.00	2.151	15.41	0.00	8.9	91.1	0.0	-0.51	0.47	0.71	0.76	2.56	7382	627	3	109	1	0	0	logfile
✔	8H1J	34428	2023-09-28	2022-10-03	3.1	3.36	3.20	3.3	0.005	0.53	0.0	0.03	16.84	0.00	2.232	8.41	5.19	1.7	98.3	0.0	2.19	0.62	0.67	2.02	3.3	0.003	0.50	0.0	0.03	17.79	0.00	2.183	8.31	0.32	2.0	98.0	0.0	1.45	0.62	0.71	0.78	1.97	5773	362	5	134	1	0	0	logfile
✔	6PEK	20327	2023-09-30	2019-06-20	4.2	4.25	—	4.2	0.005	0.73	0.0	0.03	13.79	0.00	1.913	4.42	0.00	0.8	99.2	0.0	-2.47	0.70	0.74	—	4.2	0.003	0.74	0.0	0.04	14.87	0.00	1.129	14.37	0.00	3.0	97.0	0.0	-0.34	0.99	0.71	0.77	—	11106	1405	11	0	13	0	0	logfile
✔	8CQR	16799	2023-09-29	2023-03-07	3.8	4.35	3.84	4.2	0.002	0.43	0.0	0.03	11.30	0.00	2.374	4.02	0.00	4.0	96.0	0.0	0.53	0.43	0.64	1.08	4.2	0.003	0.59	0.0	0.04	14.87	0.00	2.256	14.83	0.58	4.5	95.5	0.0	1.38	1.56	0.45	0.67	0.47	9708	618	6	0	0	0	5010	logfile
✔	8SZB	40907	2023-09-28	2023-05-29	3.07	3.36	3.01	3.5	0.003	0.51	0.0	0.03	16.92	0.00	2.154	9.22	0.37	1.5	98.5	0.0	2.06	0.49	0.73	0.50	3.5	0.003	0.61	0.0	0.04	17.63	0.00	2.065	8.54	0.00	1.8	98.2	0.0	4.01	0.70	0.51	0.79	1.65	4962	612	12	0	6	0	0	logfile
✔	8E2H	27836	2023-09-30	2022-08-15	2.3	2.41	2.27	2.4	0.003	0.60	0.0	0.03	15.28	0.00	1.980	6.85	0.52	1.1	98.9	0.0	1.61	0.65	0.82	4.36	2.4	0.004	0.58	0.0	0.04	16.12	0.00	1.971	7.33	2.78	0.8	99.2	0.0	2.63	0.93	0.65	0.83	4.00	10412	656	1	0	0	40	5280	logfile
✔	8EX9	28655	2023-09-27	2022-10-25	2.96	3.27	3.00	3.2	0.003	0.49	0.0	0.03	17.73	0.00	2.200	13.65	0.79	4.3	95.7	0.0	-1.52	0.60	0.71	4.83	3.2	0.004	0.55	0.0	0.03	18.23	0.00	2.170	14.22	3.97	4.3	95.7	0.0	-0.41	0.25	0.60	0.72	4.21	4199	166	4	139	0	0	0	logfile
✔	8CXM	27060	2023-09-28	2022-05-21	3.21	3.69	3.21	3.6	0.003	0.50	0.0	0.03	14.84	0.00	2.093	8.38	0.06	4.1	95.9	0.0	3.68	0.56	0.87	1.34	3.5	0.003	0.53	0.0	0.03	16.26	0.00	2.108	6.36	0.15	3.9	96.1	0.0	4.62	1.14	0.58	0.89	1.41	109560	14685	55	0	0	0	0	logfile
✔	8SRM	40735	2023-09-28	2023-05-05	4.46	5.07	4.47	4.4	0.003	0.51	0.0	0.03	4.38	0.00	2.233	4.32	0.00	4.0	96.0	0.0	2.57	0.82	0.84	—	4.3	0.006	0.64	0.0	0.04	5.47	0.00	2.070	5.40	0.00	7.2	92.8	0.0	-0.25	1.59	0.83	0.86	—	5773	1163	6	0	0	0	0	logfile
✔	8FZR	29638	2023-09-28	2023-01-29	3.6	5.09	4.10	4.1	0.002	0.48	0.0	0.03	15.49	0.00	2.234	12.34	6.97	4.6	94.4	1.0	-1.87	0.52	0.24	0.50	4.3	0.004	0.78	0.0	0.04	19.19	0.00	2.080	35.03	0.00	8.0	91.8	0.2	-2.33	2.29	0.83	0.67	0.78	5711	503	3	77	1	0	0	logfile
✔	8SZA	40905	2023-09-28	2023-05-29	2.75	3.32	2.81	3.4	0.003	0.65	0.0	0.03	14.83	0.00	2.185	8.19	0.98	0.3	99.7	0.0	2.12	0.50	0.78	1.28	3.4	0.003	0.61	0.0	0.04	15.68	0.00	2.280	8.99	2.16	0.7	99.3	0.0	2.68	0.49	0.50	0.78	1.33	4800	606	11	0	6	0	0	logfile
✔	7oDR	12845	2023-09-27	2021-04-30	2.9	3.11	—	3.0	0.002	0.41	0.0	0.03	11.20	0.02	1.963	4.98	0.44	1.1	98.9	0.0	0.96	0.74	0.80	3.31	3.0	0.003	0.69	0.0	0.04	15.31	0.01	1.914	9.97	2.50	2.0	97.9	0.0	0.91	1.25	0.76	0.84	2.68	107464	9244	68	1489	135	0	0	logfile
✘	8BF8	16016	2023-09-27	2022-10-24	2.8	3.14	2.80	3.1	0.003	0.47	0.0	0.03	13.85	0.00	2.203	8.73	0.93	2.7	97.3	0.0	0.92	0.64	0.76	2.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4686	302	2	111	0	0	0	logfile

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