Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oDR	12845	2021-12-01	2021-04-30	2.9	3.11	—	3.0	0.002	0.40	0.0	0.03	11.10	0.02	1.963	4.95	0.44	1.1	98.9	0.0	0.96	0.74	0.80	3.31	3.0	0.008	0.85	2.0	0.04	15.35	0.01	1.775	12.12	2.47	2.4	97.6	0.0	0.51	1.25	0.76	0.83	2.86	107464	9244	68	1489	135	0	0	logfile
✔	6GC7	4382	2021-12-01	2018-04-17	4.3	4.85	—	4.4	0.003	0.67	0.0	0.03	13.13	0.00	2.251	5.08	0.28	5.9	93.9	0.1	-4.27	0.76	0.61	—	4.4	0.004	0.62	0.0	0.03	15.05	0.01	1.978	23.78	0.00	8.9	91.0	0.1	-1.86	1.64	0.91	0.86	—	54410	1738	17	1901	0	0	0	logfile
✔	7EZ2	31386	2021-12-01	2021-06-01	3.05	2.80	—	3.0	0.005	0.56	0.0	0.03	13.90	0.00	1.809	0.92	0.00	0.0	0.0	0.0	—	0.69	0.81	—	2.9	0.007	0.84	0.0	0.05	15.80	0.01	1.754	7.27	0.00	0.0	0.0	0.0	—	1.04	0.70	0.82	—	8698	0	3	406	31	0	0	logfile
✔	6Z3Y	11066	2021-12-01	2020-05-22	3.51	3.78	3.53	3.6	0.002	0.52	0.0	0.04	11.75	0.00	2.269	9.16	1.68	5.6	94.4	0.0	0.09	0.59	0.70	0.69	3.6	0.004	0.89	0.0	0.05	15.16	0.01	2.094	17.35	0.61	8.7	91.3	0.0	-0.83	0.71	0.59	0.71	1.14	6131	771	2	0	0	0	0	logfile
✔	7C8K	30306	2021-12-01	2020-06-02	3.2	3.18	—	3.1	0.002	0.49	0.0	0.04	13.54	0.00	2.001	4.88	0.00	3.2	96.8	0.0	-1.52	0.82	0.78	2.09	3.1	0.003	0.53	0.0	0.04	15.51	0.00	2.220	7.11	0.20	3.9	96.1	0.0	1.51	0.53	0.84	0.81	3.09	4853	596	3	0	6	0	0	logfile
✔	6Z3Z	11067	2021-12-01	2020-05-22	3.19	3.90	—	3.6	0.003	0.62	0.0	0.04	13.78	0.00	2.198	8.80	0.31	6.4	93.6	0.0	-0.26	0.62	0.69	0.75	3.7	0.010	1.06	0.0	0.04	15.74	0.01	2.225	15.97	0.46	7.7	92.3	0.0	0.03	0.66	0.63	0.72	0.90	6115	769	2	0	0	0	0	logfile
✔	6XSS	22305	2021-12-01	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.015	1.65	1.0	0.04	17.18	0.01	2.065	21.16	0.36	1.6	98.4	0.0	2.61	1.33	0.75	0.80	0.22	8048	1040	4	0	0	0	0	logfile
✘	6YV1	10940	2021-12-01	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.77	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2496	328	1	0	0	0	0	logfile
✔	7JNC	22404	2021-12-01	2020-08-04	3.73	3.33	—	3.7	0.004	0.64	0.0	0.04	12.88	0.00	2.269	17.30	0.52	5.1	94.9	0.0	-4.01	0.57	0.68	2.03	3.7	0.022	2.20	3.0	0.11	16.17	0.01	1.993	17.78	0.17	3.5	96.5	0.0	-1.13	1.51	0.64	0.75	3.92	6573	861	9	0	15	0	0	logfile
✔	7BSU	30167	2021-12-01	2020-03-31	3.2	3.35	—	3.3	0.014	0.76	0.0	0.04	17.99	0.01	1.626	31.33	7.59	7.6	92.4	0.0	-6.52	0.59	0.85	3.64	3.3	0.004	0.74	0.0	0.04	17.09	0.00	1.896	8.30	0.59	4.0	96.0	0.0	-1.54	0.95	0.65	0.89	3.50	9326	1138	4	0	7	0	0	logfile
✔	7KAH	22770	2021-12-02	2020-10-01	3.1	3.79	3.14	3.5	0.003	0.53	0.0	0.04	12.90	0.00	2.257	4.61	0.00	3.2	96.8	0.0	-1.32	0.69	0.86	2.50	3.5	0.003	0.58	0.0	0.04	14.66	0.00	2.172	5.59	0.54	3.0	97.0	0.0	1.88	1.26	0.69	0.87	1.89	10495	1349	6	0	0	0	0	logfile
✔	7KAJ	22772	2021-12-02	2020-10-01	3.1	3.82	3.25	3.5	0.003	0.54	0.0	0.04	12.81	0.00	2.264	3.91	0.00	3.1	96.9	0.0	-1.18	0.67	0.85	2.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10712	1343	7	0	56	0	0	logfile
✔	7BX7	30235	2021-12-01	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.78	6.36	2.9	0.004	0.60	0.0	0.04	13.78	0.00	2.166	11.86	1.72	8.5	91.5	0.0	-5.45	1.13	0.41	0.79	6.15	1896	270	6	0	0	0	0	logfile
✔	6ZQi	11364	2021-12-01	2020-07-09	3.8	4.13	3.63	4.1	0.002	0.56	0.0	0.04	12.40	0.00	2.336	5.93	1.12	3.1	96.9	0.0	-2.14	0.67	0.78	0.85	4.1	0.003	0.79	0.0	0.05	15.51	0.00	2.217	11.66	0.93	4.5	95.5	0.0	-0.39	0.73	0.67	0.79	1.33	5032	655	4	0	1	0	0	logfile
✔	7KAU	22784	2021-12-02	2020-10-01	4.0	4.56	4.11	4.3	0.003	0.56	0.0	0.04	12.12	0.00	2.251	6.32	0.00	3.2	96.8	0.0	-0.93	0.64	0.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10711	1340	7	0	56	0	0	logfile
✔	7KAi	22771	2021-12-02	2020-10-01	3.2	3.86	3.25	3.5	0.003	0.53	0.0	0.04	12.28	0.00	2.229	4.23	0.00	3.6	96.4	0.0	-1.28	0.67	0.85	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10718	1343	7	0	56	0	0	logfile
✔	6XZQ	10665	2021-12-01	2020-02-05	3.6	4.18	3.53	3.7	0.005	0.64	0.0	0.04	15.64	0.01	1.924	5.93	1.26	5.0	95.0	0.0	-2.44	0.89	0.80	1.95	3.8	0.003	0.59	0.0	0.04	15.95	0.00	1.932	9.38	0.23	5.1	94.9	0.0	-0.42	0.77	0.90	0.82	1.84	56888	3492	8	19	0	0	28480	logfile
✔	7JNA	22403	2021-12-01	2020-08-04	3.6	3.74	—	3.8	0.004	0.69	0.0	0.04	13.30	0.03	2.215	11.86	0.00	4.3	95.7	0.0	-3.83	0.63	0.71	1.86	3.8	0.017	1.55	0.0	0.05	16.19	0.01	2.014	15.10	0.18	4.0	95.9	0.1	-0.71	0.84	0.68	0.77	2.33	6432	834	9	0	15	0	0	logfile
✔	7KAR	22781	2021-12-02	2020-10-01	4.0	4.56	4.12	4.3	0.003	0.59	0.0	0.04	12.73	0.00	2.224	7.84	0.00	2.8	97.2	0.0	-1.41	0.66	0.83	—	4.3	0.003	0.65	0.0	0.04	14.59	0.00	2.156	9.64	0.09	2.2	97.8	0.0	1.79	0.53	0.67	0.84	—	10435	1341	6	0	0	0	0	logfile
✔	7KAQ	22780	2021-12-02	2020-10-01	4.0	4.57	4.07	4.2	0.003	0.52	0.0	0.04	11.53	0.00	2.158	7.51	0.00	2.3	97.7	0.0	-1.00	0.62	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10753	1346	7	0	56	0	0	logfile

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