Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NEQ	9358	2021-06-06	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.27	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.003	0.65	0.0	0.03	16.40	0.00	2.107	12.44	0.42	5.3	94.6	0.1	-0.19	2.08	0.85	0.84	1.32	65776	5509	32	952	147	0	0	logfile
✘	5JTE	8175	2021-06-03	2016-05-09	3.6	3.13	—	3.2	0.015	1.74	0.0	0.03	12.16	0.00	1.221	6.22	0.00	7.4	90.0	2.7	-1.94	0.53	0.56	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	146760	5625	59	4785	2	0	0	logfile
✔	3J9W	6306	2021-06-01	2015-03-16	3.9	3.93	—	3.8	0.010	1.50	0.0	0.03	15.63	0.02	1.433	8.82	0.26	6.0	92.0	2.0	-1.66	0.74	0.72	0.72	3.8	0.004	0.71	1.0	0.04	17.58	0.00	2.022	17.77	1.02	7.2	92.1	0.6	-0.41	1.38	0.80	0.84	1.26	135425	5661	54	4675	0	0	0	logfile
✔	6NUD	0516	2021-06-03	2019-01-31	3.5	3.80	—	3.7	0.002	0.43	0.0	0.03	11.76	0.00	2.290	4.84	0.29	15.0	83.5	1.5	-5.22	0.53	0.46	0.65	3.7	0.004	0.79	0.0	0.04	17.12	0.01	2.069	12.31	0.29	8.8	91.2	0.0	-2.50	2.07	0.73	0.76	1.74	20831	2420	13	68	1	0	0	logfile
✔	6HD5	0201	2021-06-02	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.80	0.0	0.04	12.24	0.01	2.154	19.96	0.00	6.7	93.2	0.1	-0.57	2.17	0.45	0.52	—	9707	1234	3	0	0	0	0	logfile
✔	6NF8	9362	2021-06-06	2018-12-19	3.48	3.99	—	3.5	0.001	0.39	0.0	0.03	12.76	0.00	1.916	3.03	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.003	0.68	0.0	0.04	16.15	0.01	2.054	14.16	0.48	5.8	94.2	0.0	-0.31	2.62	0.84	0.80	1.14	65776	5509	32	952	147	0	0	logfile
✔	6V3D	21033	2021-06-03	2019-11-25	2.95	3.39	—	3.2	0.002	0.47	0.0	0.03	14.48	0.01	1.698	5.90	0.04	2.8	97.1	0.1	-1.93	0.85	0.86	2.47	3.2	0.003	0.61	0.0	0.03	15.82	0.01	1.895	7.21	2.98	3.8	96.2	0.1	-0.51	1.19	0.86	0.89	2.54	89040	3117	45	3007	108	231	0	logfile
✔	6WQN	21872	2021-06-02	2020-04-29	2.9	2.43	2.85	2.8	0.003	0.49	3.0	0.03	14.74	0.00	1.951	9.01	2.31	2.9	97.1	0.0	-3.39	0.75	0.85	3.70	2.8	0.006	0.81	0.0	0.04	16.88	0.01	2.052	4.67	6.43	6.0	94.0	0.0	-2.41	0.35	0.77	0.88	3.51	80700	2646	28	2798	1	0	0	logfile
✔	6WCC	21606	2021-06-02	2020-03-30	3.24	3.27	—	3.3	0.003	0.51	0.0	0.03	15.73	0.00	2.025	4.39	2.26	0.8	99.2	0.0	1.46	0.53	0.76	1.58	3.3	0.002	0.49	0.0	0.03	15.81	0.00	2.217	5.68	0.32	2.6	97.4	0.0	4.53	1.31	0.54	0.79	1.94	11629	734	6	0	5	12	5908	logfile
✔	6YDW	10779	2021-06-08	2020-03-21	4.2	4.28	4.21	4.2	0.002	0.47	0.0	0.03	13.31	0.00	1.232	8.45	1.91	3.4	96.6	0.0	-1.95	0.72	0.75	—	4.2	0.005	0.74	0.0	0.04	16.03	0.01	1.099	18.07	0.01	6.6	93.3	0.0	-0.89	1.71	0.74	0.79	—	180836	15161	124	2719	337	5	0	logfile
✔	6PoM	20416	2021-06-01	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	4.9	0.009	1.22	0.0	0.06	21.37	0.01	1.941	56.69	0.00	0.0	0.0	0.0	—	1.76	0.73	0.79	—	4937	0	2	230	0	0	0	logfile
✔	6GC6	4381	2021-06-05	2018-04-17	4.3	5.02	—	4.5	0.003	0.66	0.0	0.03	12.88	0.00	2.229	5.26	0.00	6.0	93.9	0.1	-3.94	0.74	0.57	—	4.5	0.009	0.81	0.0	0.04	16.28	0.01	2.006	34.63	0.00	10.3	89.7	0.0	-2.39	2.23	0.91	0.86	—	61404	2118	19	2092	0	0	0	logfile
✔	6GBZ	4378	2021-06-03	2018-04-16	3.8	4.02	—	3.9	0.002	0.61	0.0	0.03	13.32	0.00	2.235	2.80	0.08	6.2	93.4	0.3	-4.24	0.72	0.67	1.01	3.9	0.004	0.68	0.0	0.04	15.83	0.01	2.013	18.25	0.96	10.5	89.4	0.1	-1.97	1.57	0.78	0.77	1.03	86401	3074	29	2908	0	0	0	logfile
✔	6GC8	4383	2021-06-03	2018-04-17	3.8	4.18	—	3.9	0.002	0.57	0.0	0.03	12.93	0.00	2.129	3.87	0.16	6.3	93.5	0.2	-4.04	0.71	0.60	0.92	3.9	0.007	0.80	0.0	0.04	15.98	0.01	1.942	27.21	1.16	11.2	88.7	0.1	-2.29	2.93	0.83	0.78	0.52	88884	3090	42	3016	6	42	0	logfile
✔	6T2V	10370	2021-06-03	2019-10-09	3.8	4.58	—	3.8	0.002	0.45	0.0	0.03	13.03	0.01	2.213	4.74	3.02	2.0	98.0	0.0	-3.62	0.88	0.73	0.79	3.8	0.006	0.83	0.0	0.04	15.91	0.00	2.061	22.09	0.54	5.9	94.1	0.0	-0.18	2.43	0.91	0.81	0.60	23826	2847	4	54	0	0	0	logfile
✔	6GC7	4382	2021-06-05	2018-04-17	4.3	4.85	—	4.4	0.003	0.67	0.0	0.03	13.13	0.00	2.251	5.08	0.28	5.9	93.9	0.1	-4.27	0.76	0.61	—	4.4	0.009	0.76	0.0	0.04	15.78	0.01	1.935	30.67	0.07	9.6	90.2	0.2	-2.10	1.75	0.91	0.87	—	54410	1738	17	1901	0	0	0	logfile
✔	6GC4	4380	2021-06-02	2018-04-17	4.3	4.54	—	4.3	0.003	0.77	0.0	0.03	13.73	0.01	2.252	4.11	0.39	6.9	92.9	0.2	-3.77	0.70	0.60	—	4.3	0.008	0.89	0.0	0.04	16.60	0.01	1.915	31.66	0.00	12.8	87.0	0.2	-2.75	1.69	0.81	0.80	—	80165	2836	26	2705	0	0	0	logfile
✔	5LY6	4118	2021-06-01	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	93.40	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.79	0.0	0.04	14.11	0.00	2.179	15.41	0.00	8.7	91.0	0.2	-2.16	2.68	0.40	0.75	—	3725	471	1	0	0	0	0	logfile
✔	6V3B	21032	2021-06-02	2019-11-25	2.91	3.09	—	3.0	0.002	0.50	0.0	0.03	14.37	0.01	1.895	5.91	0.05	2.9	97.1	0.1	-1.21	0.83	0.83	2.56	3.0	0.008	0.78	0.0	0.05	16.33	0.01	1.726	7.16	3.20	5.4	94.5	0.1	-0.32	1.59	0.87	0.90	2.55	140290	5457	76	4535	95	398	0	logfile
✔	5o9G	3765	2021-06-02	2017-06-19	4.8	5.07	4.71	10.4	0.002	0.47	0.0	0.03	22.47	0.00	2.194	7.36	0.36	9.1	90.8	0.1	-4.25	0.51	0.13	—	4.8	0.005	0.78	0.0	0.04	25.05	0.01	2.033	22.23	0.07	6.7	93.3	0.1	-1.21	2.75	0.88	0.82	—	19681	1610	11	324	2	0	0	logfile

• ← previous
• Page 2 of 253
• next →