Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WYV	21969	2022-05-15	2020-05-13	2.75	3.18	—	3.0	0.006	0.43	2.0	0.02	12.86	0.02	1.925	3.89	1.57	7.1	92.8	0.1	-4.66	0.70	0.84	3.35	3.0	0.005	0.67	2.0	0.04	15.13	0.01	1.975	10.78	4.72	7.5	92.4	0.1	-1.80	1.51	0.71	0.88	2.97	72194	971	9	3015	1	0	0	logfile
✔	7JSH	22454	2022-05-12	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.004	1.19	0.0	0.04	13.17	0.00	1.948	19.40	0.00	27.4	72.5	0.2	-5.14	6.11	0.74	0.62	—	7916	1904	8	15	0	0	0	logfile
✔	5A8L	3099	2022-05-13	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	9.01	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.007	0.91	0.0	0.03	16.17	0.01	1.948	15.58	0.38	8.5	90.6	1.0	-1.53	1.40	0.22	0.61	0.47	12264	624	9	347	0	0	0	logfile
✔	6UES	20755	2022-05-12	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	7SAM	24952	2022-05-12	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.006	0.88	0.0	0.04	22.86	0.01	1.817	83.53	0.00	0.0	0.0	0.0	—	5.89	0.95	0.86	—	5399	0	1	169	0	0	1802	logfile
✔	6PC5	20296	2022-05-15	2019-06-16	2.7	3.05	—	2.9	0.006	0.49	2.0	0.02	12.54	0.02	1.965	2.75	1.57	6.1	93.8	0.1	-3.49	0.73	0.88	5.14	2.9	0.005	0.63	2.0	0.03	14.51	0.01	1.988	7.45	4.19	6.3	93.5	0.2	-1.07	1.24	0.73	0.91	4.17	72206	971	9	3015	1	0	0	logfile
✔	5G2X	3331	2022-05-14	2016-04-16	3.8	3.49	—	3.4	0.001	0.31	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.004	0.76	0.0	0.04	17.15	0.01	1.994	28.48	0.45	18.5	80.5	1.1	-4.42	1.71	0.79	0.64	0.68	19072	487	3	704	0	0	0	logfile
✔	6PCT	20307	2022-05-15	2019-06-18	2.8	3.01	—	2.9	0.006	0.52	2.0	0.03	12.86	0.02	1.891	2.99	2.50	6.3	93.6	0.1	-3.70	0.66	0.85	4.28	2.9	0.005	0.67	0.0	0.04	14.69	0.01	2.086	8.30	3.68	6.6	93.3	0.1	-0.91	0.41	0.68	0.89	4.30	72198	964	8	3015	1	0	0	logfile
✘	6X36	22019	2022-05-17	2020-05-21	4.7	4.72	5.52	4.6	0.002	0.53	0.0	0.03	10.40	0.00	2.228	5.93	0.00	2.2	97.8	0.0	0.96	0.76	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	100164	13692	12	0	1376	0	0	logfile
✔	6PC7	20298	2022-05-15	2019-06-16	2.5	3.01	—	2.9	0.006	0.50	0.0	0.03	12.79	0.02	1.954	2.86	2.23	6.2	93.7	0.1	-3.93	0.66	0.85	3.71	2.9	0.004	0.61	0.0	0.03	14.37	0.01	2.018	7.85	3.55	6.8	93.0	0.2	-0.97	1.25	0.66	0.88	3.95	72146	964	8	3015	1	0	0	logfile
✔	6X34	22017	2022-05-17	2020-05-21	4.7	6.14	4.99	4.8	0.001	0.41	0.0	0.03	9.38	0.00	2.258	3.87	0.61	1.6	98.4	0.0	-2.99	0.74	0.66	—	4.8	0.003	0.65	0.0	0.04	9.64	0.00	2.095	12.85	0.00	4.0	96.0	0.0	0.40	0.92	0.80	0.80	—	97888	13956	12	0	1320	0	0	logfile
✔	6ZoJ	11320	2022-05-15	2020-07-07	2.8	3.07	—	3.0	0.002	0.51	0.0	0.03	14.31	0.00	1.694	4.49	1.39	2.3	97.7	0.0	0.76	0.80	0.85	3.50	2.9	0.007	0.69	0.0	0.04	16.02	0.01	1.068	5.53	2.64	3.5	96.5	0.0	0.48	2.45	0.81	0.87	3.31	75783	4914	45	1704	169	0	0	logfile
✔	6ZoK	11321	2022-05-18	2020-07-07	2.8	2.96	2.77	2.9	0.003	0.52	0.0	0.03	14.36	0.00	1.989	4.11	1.48	2.2	97.8	0.0	0.55	0.74	0.86	4.30	2.9	0.007	0.68	0.0	0.04	16.03	0.01	1.814	4.24	2.85	2.9	97.1	0.0	0.44	1.56	0.75	0.88	4.00	50192	2970	26	1232	110	0	0	logfile
✔	7JiL	22345	2022-05-16	2020-07-23	2.8	3.31	—	3.2	0.002	0.48	0.0	0.03	14.70	0.00	1.987	6.79	2.15	9.9	90.0	0.1	-3.96	0.82	0.84	2.44	3.2	0.007	0.70	0.0	0.04	15.87	0.01	1.790	6.52	5.13	12.3	87.6	0.1	-2.42	0.39	0.75	0.79	2.78	133098	5314	64	4327	325	36	0	logfile
✔	6W6K	21558	2022-05-18	2020-03-17	3.6	3.84	—	3.7	0.002	0.47	0.0	0.03	14.66	0.00	2.113	10.39	0.00	6.9	93.1	0.0	-4.28	0.70	0.59	0.52	3.7	0.007	0.92	1.0	0.04	17.11	0.01	1.510	21.81	0.44	12.4	87.6	0.1	-3.12	0.82	0.74	0.67	0.42	46934	1873	19	1534	1	0	0	logfile
✔	6Z5L	11079	2022-05-25	2020-05-26	3.8	4.08	—	3.9	0.004	0.63	0.0	0.03	15.41	0.00	1.986	3.72	0.00	5.2	94.8	0.0	1.60	0.53	0.68	0.31	3.9	0.004	0.73	0.0	0.04	17.30	0.00	2.134	14.41	0.27	4.6	95.4	0.0	2.36	1.29	0.58	0.86	1.00	154880	20080	80	0	0	0	0	logfile
✔	7KoD	22972	2022-05-14	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.49	0.0	0.04	13.81	0.00	1.858	2.53	0.27	0.6	99.4	0.0	5.26	0.58	0.88	0.94	8.02	68186	4128	48	0	0	1727	32643	logfile
✔	6W7W	21573	2022-05-15	2020-03-19	3.9	4.46	—	4.0	0.002	0.49	0.0	0.03	15.50	0.00	2.156	10.72	0.12	4.1	95.9	0.0	-2.82	0.91	0.83	1.20	4.0	0.007	0.80	0.0	0.04	17.06	0.01	2.075	26.17	1.29	7.7	92.3	0.0	-1.52	0.61	0.92	0.85	1.34	26883	1047	10	871	0	0	0	logfile
✔	7JGG	22326	2022-05-12	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.5	0.002	0.46	0.0	0.03	12.61	0.00	1.976	80.83	0.00	4.5	95.5	0.0	1.72	1.70	0.67	0.69	—	4210	506	1	0	0	0	28	logfile
✔	6W77	21569	2022-05-18	2020-03-18	3.6	3.44	—	3.3	0.002	0.53	0.0	0.03	14.96	0.00	2.084	9.36	0.12	6.1	93.7	0.2	-3.22	0.73	0.67	0.91	3.3	0.005	0.73	0.0	0.04	16.22	0.01	1.738	15.78	0.43	9.8	90.0	0.2	-1.80	1.76	0.76	0.70	0.99	47940	1949	18	1519	0	0	0	logfile

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