Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6K9F	9948	2023-02-22	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	4.6	0.004	1.22	0.0	0.05	17.69	0.00	2.013	28.27	0.53	1.4	98.6	0.0	-0.68	3.70	0.67	0.84	0.35	8484	1044	12	0	0	0	0	logfile
✔	7QEY	13944	2023-02-19	2021-12-03	2.0	2.46	—	2.2	0.009	0.57	0.0	0.03	10.74	0.00	2.199	3.57	2.35	1.7	98.3	0.0	1.74	0.77	0.90	5.27	2.1	0.004	0.68	0.0	0.04	13.34	0.00	2.160	4.49	1.12	2.3	97.7	0.0	3.13	0.56	0.78	0.93	4.39	9467	1092	18	0	30	281	0	logfile
✔	6T9L	10415	2023-02-22	2019-10-28	3.6	3.74	3.53	3.6	0.002	0.47	0.0	0.03	22.54	0.00	2.136	7.11	0.07	1.1	98.9	0.0	-1.63	0.74	0.68	0.82	3.6	0.005	0.68	0.0	0.04	25.18	0.00	1.945	9.77	0.37	3.5	96.5	0.0	0.77	0.84	0.84	0.84	1.37	18157	1532	18	290	8	0	0	logfile
✔	7Sii	25142	2023-02-23	2021-10-14	3.45	3.63	—	3.6	0.008	0.74	0.0	0.03	13.14	0.00	2.220	5.25	2.21	2.9	97.1	0.0	2.94	0.64	0.79	2.61	3.6	0.004	0.55	0.0	0.03	15.31	0.00	2.106	7.44	0.46	3.0	97.0	0.0	2.33	0.51	0.66	0.83	1.88	20484	1286	8	0	4	0	10184	logfile
✔	6PEK	20327	2023-02-20	2019-06-20	4.2	4.25	—	4.2	0.005	0.73	0.0	0.03	13.79	0.00	1.913	4.42	0.00	0.8	99.2	0.0	-2.47	0.70	0.74	—	4.2	0.003	0.74	0.0	0.04	14.87	0.00	1.129	14.37	0.00	3.0	97.0	0.0	-0.34	0.99	0.71	0.77	—	11106	1405	11	0	13	0	0	logfile
✔	8CVi	27008	2023-02-25	2022-05-18	3.4	3.54	3.20	3.4	0.003	0.49	0.0	0.03	13.53	0.00	2.073	8.79	0.05	4.0	95.9	0.1	1.49	0.55	0.83	1.22	3.4	0.003	0.58	1.0	0.04	16.27	0.00	2.023	10.85	0.42	4.0	96.0	0.0	3.71	2.21	0.58	0.84	0.83	66030	8856	33	0	0	0	0	logfile
✔	7FHL	31586	2023-02-21	2021-07-29	3.1	3.71	—	3.6	0.002	0.55	0.0	0.03	12.50	0.00	2.150	6.83	0.00	1.2	98.8	0.0	1.13	0.70	0.81	1.99	3.6	0.003	0.59	0.0	0.04	14.76	0.00	2.137	8.87	0.08	2.0	98.0	0.0	2.22	0.46	0.69	0.82	1.68	11058	1326	6	0	28	0	0	logfile
✔	6PoM	20416	2023-02-17	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.28	0.0	0.06	21.46	0.01	1.930	61.80	0.00	0.0	0.0	0.0	—	1.76	0.75	0.80	—	4937	0	2	230	0	0	0	logfile
✔	7X57	33010	2023-02-19	2022-03-04	3.63	3.95	—	3.8	0.003	0.63	0.0	0.03	28.98	0.01	2.286	9.90	0.20	1.4	98.6	0.0	0.39	0.82	0.76	1.31	3.8	0.003	0.64	0.0	0.03	29.85	0.00	2.269	13.03	0.99	2.6	97.4	0.0	2.84	0.69	0.83	0.79	1.19	9767	595	10	242	0	0	0	logfile
✔	6WCB	21605	2023-02-20	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.003	0.50	0.0	0.04	15.55	0.00	2.072	3.71	0.16	1.7	98.3	0.0	3.40	1.29	0.54	0.79	2.46	11647	734	6	0	7	40	5904	logfile
✔	7X58	33011	2023-02-19	2022-03-04	3.93	4.15	—	3.9	0.003	0.56	0.0	0.03	27.31	0.00	2.221	7.16	0.00	0.9	99.1	0.0	0.68	0.86	0.80	1.58	3.9	0.004	0.72	0.0	0.04	29.78	0.00	2.201	14.33	1.19	2.4	97.6	0.0	2.26	1.37	0.88	0.83	0.76	9775	596	10	242	0	0	0	logfile
✔	7XSM	33427	2023-02-20	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	15.76	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.76	0.0	0.04	19.93	0.01	1.773	49.65	0.00	0.0	0.0	0.0	—	1.70	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	7oBQ	12799	2023-02-22	2021-04-23	3.9	4.22	—	3.9	0.003	0.48	0.0	0.03	12.88	0.00	2.106	9.19	2.63	2.7	97.3	0.0	1.55	0.76	0.79	0.82	3.9	0.003	0.72	0.0	0.04	15.48	0.00	1.906	16.54	0.73	4.1	95.9	0.0	0.38	0.65	0.77	0.81	1.12	16668	1642	11	165	39	0	0	logfile
✔	7KoD	22972	2023-02-26	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.49	0.0	0.04	13.86	0.00	1.860	2.84	0.22	0.6	99.4	0.0	5.19	0.83	0.87	0.93	8.00	68186	4128	48	0	0	1727	32643	logfile
✔	7YoZ	33991	2023-02-19	2022-08-02	4.3	4.57	4.38	4.3	0.003	0.55	0.0	0.03	27.62	0.00	2.269	6.78	0.00	1.4	98.6	0.0	0.64	0.85	0.72	—	4.3	0.004	0.74	0.0	0.04	29.71	0.01	2.196	19.72	0.00	1.9	98.1	0.0	0.22	1.82	0.89	0.83	—	9752	594	10	242	0	0	0	logfile
✔	7V9A	31813	2023-02-22	2021-08-24	3.94	3.46	—	3.4	0.002	0.58	0.0	0.03	14.82	0.00	2.260	6.87	0.00	5.2	94.8	0.0	-4.05	0.66	0.57	0.34	3.1	0.003	0.71	0.0	0.04	17.01	0.00	2.138	13.49	0.33	8.4	91.6	0.0	-2.16	1.88	0.72	0.68	1.10	16876	1723	10	146	0	0	0	logfile
✔	7RZV	24779	2023-02-16	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.37	0.0	0.03	15.99	0.00	2.228	4.86	0.67	0.0	100.0	0.0	5.66	0.87	0.83	0.83	1.88	2562	339	6	0	0	0	0	logfile
✔	7ZiR	14738	2023-02-16	2022-04-08	2.5	2.51	2.04	2.7	0.002	0.34	0.0	0.03	9.02	0.00	2.317	1.65	0.00	2.0	98.0	0.0	-3.82	0.48	0.90	7.46	2.7	0.003	0.46	0.0	0.04	12.12	0.00	2.316	0.28	0.00	2.9	97.1	0.0	-3.83	1.03	0.50	0.93	7.96	2120	255	10	0	0	50	0	logfile
✔	7MVY	24058	2023-02-25	2021-05-15	2.39	3.24	1.97	3.1	0.002	0.39	0.0	0.03	6.61	0.00	2.209	3.28	0.00	0.7	99.3	0.0	-0.54	0.72	0.64	0.92	3.0	0.004	0.62	0.0	0.04	14.21	0.00	1.966	12.50	1.86	4.0	96.0	0.0	1.26	1.65	0.76	0.75	2.15	26555	1694	2	0	0	0	13337	logfile
✔	7XHT	33198	2023-02-18	2022-04-10	2.55	2.77	2.54	2.8	0.003	0.68	0.0	0.03	14.64	0.00	2.014	6.29	0.00	1.8	98.2	0.0	0.35	0.69	0.85	5.47	2.8	0.002	0.52	0.0	0.03	15.90	0.00	1.997	6.66	1.75	2.0	98.0	0.0	0.73	0.35	0.65	0.85	4.80	7839	395	6	220	3	0	0	logfile

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