Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XD5	33136	2023-11-14	2022-03-26	2.84	3.32	2.81	3.1	0.003	0.58	0.0	0.03	13.91	0.00	1.864	0.61	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.1	0.004	0.64	0.0	0.04	15.34	0.00	1.950	6.11	0.00	0.0	0.0	0.0	—	1.39	0.89	0.90	—	8714	0	3	406	30	0	0	logfile
✔	8FKQ	29253	2023-11-21	2022-12-21	2.76	3.11	2.87	3.0	0.003	0.55	0.0	0.03	13.51	0.00	2.001	1.93	0.02	1.1	98.9	0.0	1.47	0.77	0.82	3.34	3.0	0.008	0.68	0.0	0.04	14.71	0.01	1.931	5.90	1.63	2.4	97.6	0.0	0.64	0.42	0.79	0.88	3.23	93805	6882	52	1784	53	0	0	logfile
✔	8A3B	15110	2023-11-16	2022-06-07	3.1	2.31	2.85	2.9	0.003	0.55	0.0	0.03	14.17	0.00	2.091	4.59	0.00	0.9	99.1	0.0	2.21	0.73	0.72	2.28	2.1	0.004	0.59	0.0	0.04	16.26	0.00	2.134	6.73	0.49	1.6	98.4	0.0	2.23	0.49	0.74	0.77	2.04	14448	1792	7	0	0	0	0	logfile
✘	6K3o	9910	2023-11-20	2019-05-21	3.4	3.86	—	3.8	0.003	0.56	0.0	0.03	14.46	0.00	1.077	16.09	0.00	3.8	96.2	0.0	-1.52	0.79	0.82	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31508	3790	48	0	36	0	0	logfile
✔	7oQZ	13035	2023-11-14	2021-06-04	3.27	3.59	3.75	3.8	0.009	0.98	0.0	0.03	13.71	0.00	2.257	3.35	0.51	1.3	98.7	0.0	4.83	0.61	0.78	2.67	3.8	0.004	0.75	0.0	0.04	17.35	0.00	2.109	11.10	1.15	3.1	96.9	0.0	3.11	0.81	0.63	0.81	2.23	7996	948	8	0	16	0	0	logfile
✔	8ET7	28587	2023-11-14	2022-10-16	3.77	4.05	3.85	4.0	0.003	0.49	0.0	0.03	10.93	0.00	2.342	3.90	0.24	3.2	96.8	0.0	1.90	0.49	0.70	1.68	4.0	0.004	0.60	0.0	0.03	15.59	0.00	1.890	9.26	0.24	6.0	94.0	0.0	0.87	1.50	0.50	0.73	1.36	8111	532	3	0	3	0	4007	logfile
✔	7XD4	33135	2023-11-14	2022-03-26	3.89	4.13	—	3.8	0.003	0.59	0.0	0.03	15.73	0.00	1.880	1.73	0.00	0.0	0.0	0.0	—	0.85	0.73	—	3.8	0.007	0.78	0.0	0.04	17.52	0.01	1.755	18.36	0.00	0.0	0.0	0.0	—	1.84	0.87	0.78	—	9062	0	1	423	28	0	0	logfile
✔	7WB0	32391	2023-11-15	2021-12-15	3.2	3.52	—	3.3	0.003	0.58	0.0	0.03	18.37	0.00	2.136	7.20	0.00	3.3	96.6	0.1	0.54	0.70	0.73	1.78	3.3	0.003	0.57	0.0	0.03	19.30	0.00	2.126	7.96	0.14	4.7	95.2	0.1	0.59	1.05	0.71	0.77	1.11	10096	797	4	175	0	0	0	logfile
✔	7EZ2	31386	2023-11-14	2021-06-01	3.05	2.80	—	3.0	0.005	0.56	0.0	0.03	13.94	0.00	1.809	0.92	0.00	0.0	0.0	0.0	—	0.69	0.81	—	3.0	0.007	0.85	0.0	0.05	15.80	0.01	1.484	7.35	0.00	0.0	0.0	0.0	—	1.04	0.73	0.89	—	8698	0	3	406	31	0	0	logfile
✔	6X32	22015	2023-11-15	2020-05-21	3.8	3.75	—	3.9	0.001	0.36	0.0	0.03	7.99	0.00	2.266	3.27	0.00	1.4	98.6	0.0	-3.72	0.56	0.69	2.26	3.9	0.004	0.67	0.0	0.04	13.24	0.00	2.114	9.22	0.43	3.1	96.9	0.0	0.55	1.68	0.60	0.74	1.86	114280	14744	16	0	1416	0	0	logfile
✔	7BL5	12218	2023-11-22	2021-01-18	3.3	3.74	—	3.5	0.002	0.45	0.0	0.03	14.15	0.00	2.029	11.79	0.11	5.7	94.3	0.0	-1.05	0.75	0.79	1.02	3.5	0.006	0.75	1.0	0.04	16.15	0.01	1.891	21.98	1.27	9.9	90.1	0.0	-1.98	0.64	0.77	0.84	1.12	98927	4348	46	3033	3	27	0	logfile
✔	7YCG	33738	2023-11-14	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	14.85	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.007	0.67	0.0	0.04	15.91	0.00	1.847	33.58	0.00	0.0	0.0	0.0	—	0.32	0.95	0.90	—	8661	0	2	404	4	0	0	logfile
✔	7M4Y	23670	2023-11-20	2021-03-22	2.5	1.72	—	1.5	0.006	0.58	2.0	0.03	16.31	0.02	1.783	3.47	2.14	2.5	97.3	0.2	1.41	0.77	0.73	3.74	1.5	0.004	0.71	0.0	0.04	16.46	0.01	1.725	4.89	3.30	2.6	97.2	0.1	0.47	0.29	0.79	0.76	3.79	139817	5511	80	4453	200	1044	0	logfile
✔	6GC0	4379	2023-11-20	2018-04-16	3.8	4.10	—	4.0	0.002	0.52	0.0	0.03	12.29	0.00	2.283	3.44	0.04	5.9	94.0	0.1	-4.24	0.72	0.66	1.32	3.9	0.007	0.86	0.0	0.04	16.08	0.01	1.971	27.40	1.84	11.9	88.0	0.1	-2.47	2.62	0.78	0.77	1.14	84138	2950	28	2848	0	0	0	logfile
✔	6NTS	0510	2023-11-14	2019-01-30	3.63	4.31	2.98	3.6	0.016	0.51	0.0	0.03	13.24	0.00	1.917	2.06	0.00	3.8	96.2	0.0	-2.08	0.89	0.77	0.59	3.7	0.002	0.62	0.0	0.04	15.03	0.00	2.090	8.58	0.09	2.4	97.6	0.0	0.74	2.30	0.92	0.85	1.21	9956	1240	5	0	3	0	0	logfile
✔	6GBZ	4378	2023-11-20	2018-04-16	3.8	4.02	—	3.9	0.002	0.61	0.0	0.03	13.32	0.00	2.235	2.82	0.08	6.2	93.4	0.3	-4.24	0.72	0.67	1.01	3.9	0.004	0.68	0.0	0.04	15.88	0.01	1.991	18.14	0.84	10.4	89.4	0.2	-2.07	0.87	0.78	0.77	0.99	86401	3074	29	2908	0	0	0	logfile
✔	7JGG	22326	2023-11-13	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.5	0.002	0.47	0.0	0.03	12.80	0.00	1.958	77.81	0.00	4.3	95.7	0.0	1.53	1.24	0.66	0.69	—	4210	506	1	0	0	0	28	logfile
✔	6X35	22018	2023-11-14	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.37	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.003	0.64	0.0	0.04	11.49	0.00	2.229	8.53	0.02	3.2	96.8	0.0	1.06	1.69	0.57	0.72	—	111888	14740	16	0	1432	0	0	logfile
✔	6X33	22016	2023-11-15	2020-05-21	4.2	4.35	—	4.3	0.001	0.37	0.0	0.03	9.39	0.00	2.304	3.24	0.00	1.9	98.1	0.0	-4.22	0.55	0.69	—	4.3	0.003	0.64	0.0	0.04	11.75	0.00	2.056	8.49	0.06	3.0	97.0	0.0	0.21	0.65	0.57	0.72	—	112372	14796	16	0	1436	0	0	logfile
✔	8HD7	34671	2023-11-14	2022-11-03	3.52	3.99	3.58	3.3	0.003	0.60	0.0	0.03	14.67	0.00	1.927	2.96	0.00	0.0	0.0	0.0	—	0.89	0.77	—	3.3	0.008	0.83	0.0	0.05	16.67	0.01	1.800	17.97	0.00	0.0	0.0	0.0	—	2.13	0.90	0.82	—	8983	0	1	419	28	0	0	logfile

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