Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QK6	14039	2022-07-02	2021-12-17	2.27	2.34	2.17	2.3	0.011	1.84	0.0	0.09	9.70	0.01	2.520	0.00	0.00	6.4	93.6	0.0	-1.99	0.37	0.79	7.78	2.3	0.002	0.57	0.0	0.05	15.85	0.00	2.385	4.06	0.69	5.8	94.2	0.0	-2.20	1.44	0.38	0.85	7.07	2469	162	3	0	0	0	1278	logfile
✔	7QVF	14176	2022-07-03	2022-01-21	3.64	3.54	3.42	4.1	0.012	2.10	22.0	0.12	15.51	0.01	2.525	0.00	0.53	6.0	94.0	0.0	-2.41	0.43	0.77	3.90	3.6	0.004	0.89	0.0	0.06	16.73	0.00	2.143	15.98	1.06	6.9	93.1	0.0	-2.46	3.87	0.40	0.75	3.40	6516	810	6	0	0	0	0	logfile
✔	7QVC	14174	2022-07-03	2022-01-21	2.64	2.62	2.62	2.6	0.012	2.09	10.0	0.12	15.49	0.01	2.525	0.00	0.53	5.8	94.2	0.0	-2.45	0.43	0.86	7.41	2.6	0.005	0.75	0.0	0.06	17.90	0.00	2.135	8.46	3.70	5.3	94.7	0.0	-2.31	2.44	0.42	0.89	6.07	3255	405	3	0	0	0	0	logfile
✔	7QK3	14030	2022-07-02	2021-12-17	2.44	2.73	2.35	2.7	0.010	2.07	0.0	0.11	12.55	0.01	2.519	0.00	0.00	3.4	96.6	0.0	-3.04	0.38	0.77	5.65	2.7	0.003	0.73	0.0	0.05	16.22	0.00	2.309	3.65	1.28	4.0	96.0	0.0	-2.83	1.47	0.40	0.82	5.18	2742	183	3	0	0	0	1407	logfile
✔	5U1D	8482	2022-07-03	2016-11-28	3.97	4.06	—	4.3	0.007	1.17	0.0	0.05	12.05	0.00	2.452	0.07	0.84	5.7	94.1	0.2	-2.16	0.36	0.48	1.30	4.3	0.004	0.78	0.0	0.04	15.92	0.00	1.985	14.80	0.51	4.8	95.1	0.1	0.73	1.31	0.52	0.75	1.33	7815	1168	3	0	0	0	0	logfile
✔	7TK8	25960	2022-07-04	2022-01-17	4.7	7.79	12.86	4.4	0.019	2.21	0.0	0.00	6.68	0.01	2.390	0.08	0.00	4.1	94.4	1.5	-0.46	0.60	0.61	—	4.4	0.008	1.17	0.0	0.00	6.80	0.01	1.933	31.40	0.00	11.8	87.8	0.4	-1.32	1.58	0.81	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7TKQ	25978	2022-07-04	2022-01-17	4.5	7.57	4.53	4.3	0.019	2.21	0.0	0.00	6.72	0.01	2.371	0.08	0.00	4.0	94.5	1.5	-0.48	0.59	0.61	—	4.3	0.006	0.92	0.0	0.00	6.22	0.00	2.038	17.45	0.00	11.2	88.5	0.3	-0.53	0.80	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7TKH	25969	2022-07-04	2022-01-17	4.4	7.29	4.45	4.2	0.019	2.19	0.0	0.00	6.81	0.01	2.385	0.08	0.00	3.9	94.7	1.4	-0.35	0.59	0.62	—	4.2	0.013	1.06	0.0	0.00	5.97	0.00	2.028	15.64	0.00	10.8	88.9	0.2	-0.13	1.65	0.83	0.84	—	20228	5056	27	0	0	0	0	logfile
✔	7TK0	25948	2022-07-04	2022-01-17	4.4	6.63	4.39	4.1	0.019	2.21	0.0	0.00	6.55	0.01	2.394	0.08	0.00	3.9	94.5	1.5	-0.40	0.58	0.62	—	4.1	0.004	0.83	0.0	0.00	5.40	0.00	2.153	9.44	0.00	10.9	88.8	0.3	-0.57	0.81	0.83	0.81	—	20220	5054	27	0	0	0	0	logfile
✔	7TKG	25968	2022-07-04	2022-01-17	4.5	7.60	4.79	4.2	0.019	2.20	0.0	0.00	6.95	0.01	2.361	0.08	0.00	4.3	94.2	1.5	-0.60	0.58	0.61	—	4.2	0.005	0.95	0.0	0.00	6.53	0.00	2.099	18.88	0.00	13.4	86.4	0.2	-2.17	1.58	0.81	0.81	—	20228	5056	27	0	0	0	0	logfile
✔	7ADM	11731	2022-07-03	2020-09-15	3.5	3.77	3.57	3.8	0.013	1.98	3.0	0.11	15.37	0.02	2.582	0.10	0.73	11.9	88.1	0.0	-2.91	0.49	0.70	2.46	3.8	0.018	1.28	1.0	0.04	16.62	0.00	2.082	11.00	0.37	9.3	90.7	0.0	-2.11	1.82	0.49	0.70	2.23	9726	614	1	0	0	0	4799	logfile
✔	7N95	24250	2022-07-03	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.003	0.89	0.0	0.00	3.97	0.00	2.552	3.52	0.00	14.4	85.4	0.2	-2.79	1.72	0.84	0.81	—	7299	2433	2	0	0	0	0	logfile
✔	7TPA	26050	2022-07-05	2022-01-25	3.6	3.99	—	3.6	0.013	1.74	3.0	0.09	12.83	0.01	2.510	0.11	1.11	6.5	92.8	0.8	-1.19	0.84	0.85	2.96	3.6	0.004	0.61	0.0	0.04	13.28	0.00	2.074	4.65	0.21	4.6	95.2	0.2	0.36	0.46	0.84	0.85	2.47	23199	2983	18	0	58	0	0	logfile
✔	7TKo	25976	2022-07-04	2022-01-17	4.8	7.71	5.39	4.4	0.019	2.23	0.0	0.00	6.74	0.01	2.314	0.12	0.00	4.8	93.9	1.4	-0.54	0.62	0.65	—	4.4	0.018	1.36	0.0	0.00	7.58	0.01	1.972	30.28	0.00	15.9	83.8	0.3	-2.17	0.89	0.84	0.82	—	20229	5056	27	0	0	0	0	logfile
✔	7TJY	25946	2022-07-04	2022-01-17	3.8	4.84	3.78	3.6	0.020	2.29	0.0	0.00	6.75	0.01	2.333	0.12	0.00	4.3	94.3	1.5	-0.54	0.59	0.68	—	3.7	0.006	0.89	0.0	0.00	5.53	0.00	2.131	6.70	0.00	11.9	87.8	0.3	-0.26	1.48	0.84	0.80	—	20228	5056	27	0	0	0	0	logfile
✔	7TKM	25974	2022-07-04	2022-01-17	4.5	7.58	4.88	4.3	0.019	2.22	0.0	0.00	6.78	0.01	2.385	0.12	0.00	4.3	94.2	1.5	-0.44	0.59	0.59	—	4.3	0.005	0.90	0.0	0.00	6.11	0.00	2.052	17.76	0.00	11.5	88.1	0.4	-1.22	1.55	0.83	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7TKP	25977	2022-07-04	2022-01-17	4.6	7.57	4.97	4.4	0.019	2.20	0.0	0.00	6.68	0.01	2.352	0.12	0.00	4.2	94.5	1.3	-0.50	0.60	0.63	—	4.4	0.004	0.83	0.0	0.00	5.46	0.00	2.080	13.25	0.00	10.0	89.8	0.2	0.34	0.82	0.82	0.84	—	20228	5056	27	0	0	0	0	logfile
✔	7KDT	22829	2022-07-03	2020-10-09	3.05	3.34	3.19	3.4	0.012	1.74	0.0	0.09	14.56	0.02	2.562	0.12	0.47	1.4	98.6	0.0	-1.64	0.70	0.77	2.95	3.3	0.002	0.51	0.0	0.03	17.10	0.00	2.221	6.08	0.00	1.8	98.2	0.0	3.06	2.82	0.68	0.79	2.35	8064	505	2	0	0	0	4042	logfile
✔	6ZHY	11221	2022-07-04	2020-06-24	3.0	3.57	2.97	3.1	0.015	2.05	3.0	0.10	28.04	0.03	2.586	0.12	0.65	1.7	98.3	0.0	-1.41	0.86	0.80	4.90	3.1	0.004	0.65	0.0	0.04	28.81	0.01	1.921	4.71	1.94	2.4	97.6	0.0	2.94	0.90	0.88	0.87	3.47	16127	557	9	220	0	0	7172	logfile
✔	7SCZ	25043	2022-07-05	2021-09-29	3.5	4.01	3.49	3.8	0.014	1.91	1.0	0.09	27.47	0.03	2.529	0.13	0.00	1.7	98.3	0.0	0.09	0.80	0.77	2.51	3.8	0.005	0.64	0.0	0.04	27.86	0.00	1.978	6.73	0.28	2.3	97.7	0.0	2.83	1.42	0.79	0.80	1.56	23205	850	11	294	0	0	10435	logfile

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