Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QJY	14026	2022-05-12	2021-12-17	3.14	2.93	3.08	3.1	0.011	1.87	0.0	0.09	12.32	0.01	2.519	0.00	0.25	5.7	94.3	0.0	-2.50	0.38	0.82	5.27	3.1	0.008	0.87	0.0	0.05	17.16	0.01	2.116	9.11	1.26	3.4	96.6	0.0	-2.45	3.42	0.36	0.84	4.60	3444	450	6	0	0	0	0	logfile
✔	7QKG	14041	2022-05-12	2021-12-17	3.36	3.19	3.09	3.4	0.010	2.03	0.0	0.10	10.76	0.01	2.528	0.00	0.00	6.4	93.6	0.0	-1.98	0.38	0.80	4.23	3.5	0.003	0.60	0.0	0.05	13.51	0.00	2.262	5.27	0.00	2.6	97.4	0.0	-1.55	1.17	0.36	0.83	4.87	2469	162	3	0	0	0	1278	logfile
✔	7NCH	12266	2022-05-13	2021-01-28	3.84	3.76	3.69	3.8	0.013	1.61	2.0	0.10	14.68	0.00	2.485	0.00	0.19	9.4	90.6	0.0	-3.70	0.60	0.45	2.36	3.8	0.003	0.65	2.0	0.05	15.39	0.00	2.034	7.72	0.19	10.3	89.7	0.0	-3.84	1.65	0.64	0.52	2.46	11292	816	12	0	0	0	5796	logfile
✔	7QK3	14030	2022-05-12	2021-12-17	2.44	2.73	2.35	2.7	0.010	2.07	0.0	0.11	12.55	0.01	2.519	0.00	0.00	3.4	96.6	0.0	-3.04	0.38	0.77	5.65	2.7	0.003	0.73	0.0	0.05	16.22	0.00	2.309	3.65	1.28	4.0	96.0	0.0	-2.83	1.47	0.40	0.82	5.18	2742	183	3	0	0	0	1407	logfile
✔	5U1D	8482	2022-05-12	2016-11-28	3.97	4.06	—	4.3	0.007	1.17	0.0	0.05	12.05	0.00	2.452	0.07	0.84	5.7	94.1	0.2	-2.16	0.36	0.48	1.30	4.3	0.004	0.78	0.0	0.04	15.92	0.00	1.985	14.80	0.51	4.8	95.1	0.1	0.73	1.31	0.52	0.75	1.33	7815	1168	3	0	0	0	0	logfile
✔	7TK8	25960	2022-05-14	2022-01-17	4.7	7.79	12.86	4.4	0.019	2.21	0.0	0.00	6.68	0.01	2.390	0.08	0.00	4.1	94.4	1.5	-0.46	0.60	0.61	—	4.4	0.008	1.17	0.0	0.00	6.80	0.01	1.933	31.40	0.00	11.8	87.8	0.4	-1.32	1.58	0.81	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7TK0	25948	2022-05-14	2022-01-17	4.4	6.63	4.39	4.1	0.019	2.21	0.0	0.00	6.55	0.01	2.394	0.08	0.00	3.9	94.5	1.5	-0.40	0.58	0.62	—	4.1	0.004	0.83	0.0	0.00	5.40	0.00	2.153	9.44	0.00	10.9	88.8	0.3	-0.57	0.81	0.83	0.81	—	20220	5054	27	0	0	0	0	logfile
✔	7N95	24250	2022-05-12	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.003	0.89	0.0	0.00	3.97	0.00	2.552	3.52	0.00	14.4	85.4	0.2	-2.79	1.72	0.84	0.81	—	7299	2433	2	0	0	0	0	logfile
✔	7ADM	11731	2022-05-13	2020-09-15	3.5	3.77	3.57	3.8	0.013	1.98	3.0	0.11	15.37	0.02	2.582	0.10	0.73	11.9	88.1	0.0	-2.91	0.49	0.70	2.46	3.8	0.018	1.28	1.0	0.04	16.62	0.00	2.082	11.00	0.37	9.3	90.7	0.0	-2.11	1.82	0.49	0.70	2.23	9726	614	1	0	0	0	4799	logfile
✔	7TPA	26050	2022-05-15	2022-01-25	3.6	3.99	—	3.6	0.013	1.74	3.0	0.09	12.83	0.01	2.510	0.11	1.11	6.5	92.8	0.8	-1.19	0.84	0.85	2.96	3.6	0.004	0.61	0.0	0.04	13.28	0.00	2.074	4.65	0.21	4.6	95.2	0.2	0.36	0.46	0.84	0.85	2.47	23199	2983	18	0	58	0	0	logfile
✔	6ZHY	11221	2022-05-14	2020-06-24	3.0	3.57	2.97	3.1	0.015	2.05	3.0	0.10	28.04	0.03	2.586	0.12	0.65	1.7	98.3	0.0	-1.41	0.86	0.80	4.90	3.1	0.004	0.65	0.0	0.04	28.81	0.01	1.921	4.71	1.94	2.4	97.6	0.0	2.94	0.90	0.88	0.87	3.47	16127	557	9	220	0	0	7172	logfile
✔	7KDT	22829	2022-05-12	2020-10-09	3.05	3.34	3.19	3.4	0.012	1.74	0.0	0.09	14.56	0.02	2.562	0.12	0.47	1.4	98.6	0.0	-1.64	0.70	0.77	2.95	3.3	0.002	0.51	0.0	0.03	17.10	0.00	2.221	6.08	0.00	1.8	98.2	0.0	3.06	2.82	0.68	0.79	2.35	8064	505	2	0	0	0	4042	logfile
✔	7TJY	25946	2022-05-14	2022-01-17	3.8	4.84	3.78	3.6	0.020	2.29	0.0	0.00	6.75	0.01	2.333	0.12	0.00	4.3	94.3	1.5	-0.54	0.59	0.68	—	3.7	0.006	0.89	0.0	0.00	5.53	0.00	2.131	6.70	0.00	11.9	87.8	0.3	-0.26	1.48	0.84	0.80	—	20228	5056	27	0	0	0	0	logfile
✔	7TP9	26049	2022-05-15	2022-01-25	3.48	3.86	—	3.5	0.013	1.76	6.0	0.09	12.66	0.01	2.518	0.13	0.94	6.9	92.4	0.7	-0.96	0.84	0.84	3.41	3.5	0.004	0.63	0.0	0.04	13.46	0.00	2.021	5.71	0.13	5.8	94.1	0.1	0.17	0.49	0.85	0.86	2.70	23199	2983	18	0	58	0	0	logfile
✔	7SCZ	25043	2022-05-15	2021-09-29	3.5	4.01	3.49	3.8	0.014	1.91	1.0	0.09	27.47	0.03	2.529	0.13	0.00	1.7	98.3	0.0	0.09	0.80	0.77	2.51	3.8	0.005	0.64	0.0	0.04	27.86	0.00	1.978	6.73	0.28	2.3	97.7	0.0	2.83	1.42	0.79	0.80	1.56	23205	850	11	294	0	0	10435	logfile
✔	7TPF	26053	2022-05-15	2022-01-25	3.4	3.74	—	3.4	0.013	1.75	3.0	0.09	12.67	0.01	2.518	0.13	0.72	6.1	93.5	0.3	-0.86	0.84	0.86	3.82	3.4	0.008	0.91	0.0	0.04	13.36	0.00	2.163	4.61	0.04	4.0	95.9	0.1	0.37	0.44	0.85	0.87	3.19	23199	2983	18	0	58	0	0	logfile
✔	7QK1	14028	2022-05-12	2021-12-17	3.03	3.20	2.13	3.2	0.011	1.97	2.0	0.11	12.98	0.01	2.502	0.14	0.00	5.5	94.5	0.0	-1.61	0.48	0.84	4.10	3.2	0.006	0.81	0.0	0.05	16.34	0.00	2.070	6.83	1.01	4.1	95.9	0.0	-1.96	3.39	0.42	0.84	4.26	3444	450	6	0	0	0	0	logfile
✔	7M71	23707	2022-05-12	2021-03-26	2.66	3.67	2.73	3.0	0.013	1.86	5.0	0.11	13.04	0.02	2.531	0.15	0.41	5.0	95.0	0.0	-0.93	0.52	0.79	3.87	3.0	0.003	0.63	0.0	0.04	13.71	0.00	2.162	7.58	0.82	3.4	96.6	0.0	-0.43	1.35	0.59	0.90	3.76	6646	852	6	0	4	0	0	logfile
✔	7THE	25893	2022-05-12	2022-01-10	3.79	4.06	3.94	4.0	0.013	1.88	0.0	0.11	13.70	0.02	2.548	0.15	0.00	8.2	91.8	0.0	-2.01	0.67	0.75	3.24	4.0	0.004	0.79	0.0	0.05	16.02	0.00	2.183	17.28	0.83	7.0	93.0	0.0	-1.23	0.72	0.68	0.75	2.31	3305	423	4	0	1	0	0	logfile
✔	7N5F	24188	2022-05-12	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.56	0.0	0.04	17.43	0.00	2.324	7.74	0.95	1.3	98.7	0.0	2.60	0.79	0.35	0.77	3.26	3037	386	1	0	1	0	0	logfile

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