Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5U1D	8482	2021-06-01	2016-11-28	3.97	4.06	—	4.3	0.007	1.17	0.0	0.05	12.05	0.00	2.452	0.07	0.84	5.7	94.1	0.2	-2.16	0.36	0.48	1.30	4.1	0.003	0.76	0.0	0.04	16.37	0.00	2.149	12.31	0.51	2.9	97.0	0.1	1.57	1.34	0.52	0.74	0.97	7815	1168	3	0	0	0	0	logfile
✔	7M71	23707	2021-06-01	2021-03-26	2.66	3.67	2.73	3.0	0.013	1.86	5.0	0.11	13.04	0.02	2.531	0.08	0.41	5.0	95.0	0.0	-0.93	0.52	0.79	3.87	3.0	0.003	0.61	0.0	0.04	13.57	0.00	2.264	8.72	0.54	2.7	97.3	0.0	-0.14	1.34	0.59	0.90	3.71	6646	852	6	0	4	0	0	logfile
✔	7KDL	22826	2021-06-03	2020-10-08	2.96	3.49	—	3.4	0.013	1.75	2.0	0.10	12.25	0.01	1.479	0.09	0.27	6.1	93.6	0.3	-0.99	0.78	0.78	3.84	3.4	0.003	0.63	0.0	0.04	14.28	0.00	2.158	6.94	1.20	3.4	96.6	0.0	0.33	1.24	0.80	0.82	3.27	22365	2875	18	0	59	0	0	logfile
✔	7L6o	23124	2021-06-04	2020-12-23	3.9	4.18	3.92	3.9	0.014	1.95	2.0	0.11	13.32	0.02	2.534	0.10	0.70	8.2	91.1	0.7	-1.91	0.83	0.80	3.20	3.9	0.003	0.55	0.0	0.04	13.52	0.00	1.939	7.50	0.26	4.9	95.1	0.0	-0.54	1.26	0.83	0.80	2.16	29270	1776	51	0	132	0	13598	logfile
✔	7KE9	22835	2021-06-03	2020-10-10	3.08	3.62	—	3.5	0.013	1.73	0.0	0.09	12.05	0.01	2.491	0.11	0.04	5.8	94.0	0.2	-0.81	0.80	0.80	4.06	3.5	0.003	0.60	0.0	0.04	13.66	0.00	2.147	6.59	0.22	3.5	96.5	0.0	0.23	1.23	0.80	0.84	3.21	22365	2875	18	0	59	0	0	logfile
✔	7KDT	22829	2021-06-01	2020-10-09	3.05	3.34	3.19	3.4	0.012	1.74	0.0	0.09	14.56	0.02	2.562	0.12	0.47	1.4	98.6	0.0	-1.64	0.70	0.77	2.95	3.3	0.003	0.53	0.0	0.03	17.12	0.00	2.168	8.56	0.47	1.4	98.6	0.0	3.05	2.83	0.67	0.78	2.35	8064	505	2	0	0	0	4042	logfile
✔	6ZHY	11221	2021-06-02	2020-06-24	3.0	3.57	2.97	3.1	0.015	2.05	3.0	0.10	28.04	0.03	2.586	0.12	0.65	1.7	98.3	0.0	-1.41	0.86	0.80	4.90	3.1	0.005	0.64	0.0	0.04	28.72	0.01	1.933	4.71	1.94	2.0	98.0	0.0	3.02	0.91	0.89	0.87	3.17	16127	557	9	220	0	0	7172	logfile
✔	7M0J	23612	2021-06-03	2021-03-11	3.52	3.78	—	3.7	0.013	1.87	1.0	0.10	13.97	0.01	2.528	0.13	1.68	7.4	92.2	0.5	-2.03	0.77	0.78	2.38	3.7	0.004	0.63	0.0	0.04	15.15	0.00	2.116	9.03	0.23	3.7	96.3	0.0	0.07	1.33	0.78	0.80	2.27	22827	2916	3	0	0	0	0	logfile
✘	6UJA	20794	2021-06-01	2019-10-02	3.3	3.49	—	3.4	0.014	1.49	0.0	0.08	10.44	0.01	1.802	0.13	0.14	2.7	97.1	0.2	0.28	0.82	0.82	3.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8224	1128	5	0	23	0	0	logfile
✔	7KE4	22831	2021-06-03	2020-10-10	3.21	3.83	—	3.6	0.013	1.77	8.0	0.10	13.76	0.01	2.519	0.13	1.06	6.7	92.9	0.4	-1.54	0.77	0.73	2.97	3.6	0.007	0.73	0.0	0.05	14.60	0.00	2.107	9.86	0.31	6.0	94.0	0.0	-0.45	1.68	0.82	0.82	2.35	23684	2916	21	0	63	0	0	logfile
✔	6ZHX	11220	2021-06-03	2020-06-24	2.5	3.01	2.42	2.8	0.015	2.04	3.0	0.10	27.67	0.03	2.560	0.14	0.00	1.2	98.8	0.0	-0.83	0.80	0.81	5.74	2.7	0.005	0.62	0.0	0.04	28.54	0.00	2.191	2.04	0.48	1.4	98.6	0.0	2.82	1.05	0.87	0.89	4.66	21561	759	12	290	0	0	9607	logfile
✔	6X2A	21999	2021-06-03	2020-05-20	3.3	3.94	3.39	3.8	0.012	1.75	4.0	0.09	12.51	0.01	2.552	0.14	1.64	6.3	93.3	0.4	-1.33	0.81	0.82	3.41	3.8	0.005	0.64	0.0	0.04	13.43	0.00	2.173	6.73	0.53	4.4	95.6	0.0	0.26	2.19	0.81	0.83	2.87	21562	2875	3	0	0	0	0	logfile
✔	7LWV	23558	2021-06-03	2021-03-01	3.12	3.34	—	3.3	0.013	1.76	6.0	0.09	12.69	0.02	1.569	0.15	0.47	5.4	94.3	0.3	-0.82	0.71	0.78	3.99	3.3	0.004	0.62	0.0	0.04	14.44	0.00	2.195	4.73	0.43	3.1	96.9	0.0	0.60	0.64	0.78	0.86	3.26	23564	2980	6	0	34	0	0	logfile
✔	7LD1	23279	2021-06-03	2021-01-12	3.4	4.18	—	3.7	0.012	1.92	8.0	0.10	12.73	0.01	2.514	0.15	2.35	9.2	89.2	1.6	-2.21	0.84	0.79	2.71	3.7	0.005	0.69	0.0	0.04	13.01	0.00	2.116	7.76	0.21	7.5	92.4	0.1	-0.68	1.22	0.84	0.83	2.28	29456	4251	27	0	67	0	0	logfile
✔	7KDi	22823	2021-06-03	2020-10-08	3.26	3.83	—	3.7	0.013	1.69	2.0	0.09	12.53	0.01	2.522	0.15	0.27	6.1	93.8	0.1	-0.76	0.79	0.78	3.13	3.7	0.003	0.59	0.0	0.04	13.97	0.00	2.211	5.45	0.04	3.2	96.8	0.0	0.53	0.69	0.82	0.83	2.46	23688	2916	21	0	63	0	0	logfile
✔	7KE6	22832	2021-06-03	2020-10-10	3.1	3.68	—	3.6	0.013	1.75	4.0	0.10	13.65	0.01	2.558	0.15	1.02	6.5	93.2	0.3	-1.42	0.78	0.77	3.34	3.5	0.004	0.63	0.0	0.04	14.66	0.00	2.191	6.14	0.16	3.8	96.2	0.0	0.23	1.28	0.78	0.82	2.60	23688	2916	21	0	63	0	0	logfile
✔	7LWi	23546	2021-06-03	2021-03-01	3.07	3.28	—	3.2	0.013	1.78	4.0	0.09	12.99	0.01	2.482	0.15	0.31	5.6	94.2	0.2	-1.24	0.72	0.74	3.32	3.3	0.003	0.62	0.0	0.04	15.11	0.00	2.153	6.46	0.15	3.4	96.6	0.0	0.40	1.28	0.74	0.81	2.39	23847	3003	6	0	30	0	0	logfile
✔	7LWL	23549	2021-06-03	2021-03-01	2.84	3.04	—	3.0	0.013	1.79	4.0	0.09	12.83	0.01	2.499	0.17	0.19	4.3	95.4	0.3	-0.71	0.72	0.79	3.92	3.0	0.003	0.57	0.0	0.04	15.15	0.00	2.184	5.06	0.99	2.8	97.2	0.0	0.73	0.67	0.73	0.84	3.27	23847	3003	6	0	30	0	0	logfile
✔	6X79	22083	2021-06-03	2020-05-29	2.9	3.14	3.00	3.1	0.013	1.33	0.0	0.09	10.39	0.01	2.382	0.18	0.26	2.5	97.5	0.0	0.59	0.71	0.74	3.18	3.1	0.003	0.58	0.0	0.04	14.65	0.00	2.179	5.29	2.66	2.1	97.9	0.0	0.58	1.37	0.73	0.81	2.40	22251	2850	15	0	51	0	0	logfile
✔	7NCJ	12268	2021-06-02	2021-01-28	4.23	3.11	3.97	4.5	0.011	1.60	2.0	0.10	13.68	0.01	2.444	0.18	0.76	7.7	92.0	0.3	-2.36	0.65	0.46	—	4.3	0.003	0.61	1.0	0.05	14.35	0.00	1.943	17.06	0.00	11.7	88.3	0.0	-2.95	1.85	0.71	0.59	—	10860	774	12	0	0	0	5586	logfile

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