Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LWP	23553	2023-04-26	2021-03-01	3.01	3.22	—	3.2	0.013	1.80	8.0	0.10	13.67	0.01	2.498	0.06	1.14	5.6	93.9	0.5	-1.08	0.74	0.81	3.01	3.2	0.005	0.66	0.0	0.05	14.76	0.00	2.162	5.29	0.28	4.5	95.5	0.0	0.25	1.23	0.73	0.84	2.73	23499	2982	6	0	31	0	0	logfile
✔	5U1D	8482	2023-04-20	2016-11-28	3.97	4.06	—	4.3	0.007	1.17	0.0	0.05	12.05	0.00	2.452	0.07	0.84	5.7	94.1	0.2	-2.16	0.36	0.48	1.30	4.1	0.004	0.78	0.0	0.04	15.89	0.00	2.058	14.10	0.51	4.7	95.2	0.1	0.93	1.07	0.52	0.75	1.63	7815	1168	3	0	0	0	0	logfile
✔	7TLD	25988	2023-04-26	2022-01-18	2.89	3.35	—	3.3	0.013	1.80	0.0	0.09	13.31	0.01	2.524	0.07	0.94	5.2	94.6	0.2	-1.25	0.33	0.48	3.75	3.3	0.003	0.59	0.0	0.04	15.32	0.00	2.161	5.99	1.33	3.4	96.6	0.0	0.25	0.62	0.59	0.77	3.01	22812	2916	3	0	0	0	0	logfile
✔	7TP8	26048	2023-04-26	2022-01-25	3.4	3.77	—	3.4	0.013	1.76	6.0	0.10	13.10	0.01	2.519	0.07	0.98	6.3	92.8	0.9	-0.98	0.84	0.85	4.23	3.4	0.003	0.59	0.0	0.04	13.65	0.00	2.237	3.83	0.04	4.5	95.4	0.1	0.36	1.61	0.85	0.86	2.93	23199	2983	18	0	58	0	0	logfile
✔	7LWi	23546	2023-04-26	2021-03-01	3.07	3.28	—	3.2	0.013	1.78	1.0	0.10	13.36	0.01	2.478	0.08	1.07	5.3	94.4	0.2	-1.20	0.73	0.79	3.51	3.2	0.004	0.65	0.0	0.05	15.04	0.00	2.144	7.34	0.27	4.1	95.9	0.0	-0.02	0.68	0.73	0.80	2.62	23847	3003	6	0	30	0	0	logfile
✔	7TKQ	25978	2023-04-25	2022-01-17	4.5	7.57	4.53	4.3	0.019	2.21	0.0	0.00	6.72	0.01	2.371	0.08	0.00	4.0	94.5	1.5	-0.48	0.59	0.61	—	4.3	0.009	1.21	0.0	0.00	7.52	0.01	1.933	34.86	0.00	13.6	85.9	0.5	-2.21	0.83	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7M71	23707	2023-04-20	2021-03-26	2.66	3.67	2.73	3.0	0.013	1.86	5.0	0.11	13.09	0.02	2.531	0.08	0.41	5.0	95.0	0.0	-0.93	0.52	0.79	3.87	3.0	0.002	0.62	0.0	0.04	13.69	0.00	2.167	7.04	0.82	3.0	97.0	0.0	-0.16	1.34	0.59	0.90	3.77	6646	852	6	0	4	0	0	logfile
✔	7TK8	25960	2023-04-25	2022-01-17	4.7	7.79	12.86	4.4	0.019	2.21	0.0	0.00	6.68	0.01	2.390	0.08	0.00	4.1	94.4	1.5	-0.46	0.60	0.61	—	4.4	0.007	1.06	0.0	0.00	6.46	0.01	1.965	24.73	0.00	11.5	88.2	0.3	-0.96	1.58	0.81	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7TK0	25948	2023-04-25	2022-01-17	4.4	6.63	4.39	4.1	0.019	2.21	0.0	0.00	6.55	0.01	2.394	0.08	0.00	3.9	94.5	1.5	-0.40	0.58	0.62	—	4.1	0.003	0.80	0.0	0.00	5.24	0.00	2.105	7.94	0.00	8.9	90.9	0.3	-0.45	0.81	0.83	0.81	—	20220	5054	27	0	0	0	0	logfile
✔	7TKG	25968	2023-04-25	2022-01-17	4.5	7.60	4.79	4.2	0.019	2.20	0.0	0.00	6.95	0.01	2.361	0.08	0.00	4.3	94.2	1.5	-0.60	0.58	0.61	—	4.3	0.007	1.14	0.0	0.00	7.61	0.01	2.015	33.28	0.00	19.7	80.0	0.3	-3.26	2.09	0.77	0.80	—	20228	5056	27	0	0	0	0	logfile
✔	7ToY	26041	2023-04-27	2022-01-24	3.53	3.95	—	3.5	0.014	1.77	4.0	0.10	13.68	0.01	2.517	0.08	1.50	6.8	92.8	0.4	-1.10	0.85	0.84	2.97	3.5	0.003	0.61	0.0	0.04	14.23	0.00	2.190	5.85	0.26	4.3	95.6	0.1	0.35	0.49	0.85	0.85	2.13	24673	3049	20	0	61	0	0	logfile
✔	7TKH	25969	2023-04-25	2022-01-17	4.4	7.29	4.45	4.2	0.019	2.19	0.0	0.00	6.81	0.01	2.385	0.08	0.00	3.9	94.7	1.4	-0.35	0.59	0.62	—	4.2	0.018	1.32	0.0	0.00	7.42	0.01	1.974	32.32	0.00	15.1	84.5	0.3	-2.28	1.70	0.83	0.84	—	20228	5056	27	0	0	0	0	logfile
✔	7LWo	23552	2023-04-26	2021-03-01	2.85	3.02	—	3.0	0.013	1.79	6.0	0.09	12.73	0.01	2.511	0.09	0.59	4.5	95.1	0.3	-0.78	0.72	0.80	3.55	3.0	0.003	0.57	0.0	0.04	15.17	0.00	2.097	4.46	1.45	2.6	97.2	0.1	0.75	0.61	0.68	0.83	3.19	23556	2980	9	0	36	0	0	logfile
✔	7TLA	25985	2023-04-26	2022-01-18	3.13	3.36	—	3.3	0.012	1.76	3.0	0.09	13.37	0.01	2.522	0.09	1.12	6.0	93.7	0.3	-1.09	0.58	0.61	4.05	3.3	0.007	0.68	0.0	0.05	14.83	0.00	2.073	7.18	0.23	4.4	95.6	0.0	-0.02	0.65	0.76	0.85	3.33	23052	2948	3	0	0	0	0	logfile
✔	7LYo	23597	2023-04-26	2021-03-07	3.32	3.53	—	3.5	0.013	1.75	5.0	0.09	12.57	0.01	2.511	0.09	0.43	5.4	94.3	0.3	-0.89	0.78	0.83	3.84	3.5	0.004	0.63	0.0	0.04	14.44	0.00	2.180	6.41	0.27	3.6	96.4	0.1	0.36	0.66	0.81	0.87	2.95	23649	2982	6	0	40	0	0	logfile
✔	7KDL	22826	2023-04-26	2020-10-08	2.96	3.49	—	3.4	0.014	1.76	2.0	0.10	12.45	0.01	1.479	0.09	0.27	6.1	93.6	0.3	-0.99	0.78	0.78	3.84	3.4	0.004	0.65	0.0	0.04	14.54	0.00	2.092	7.03	1.68	3.6	96.4	0.0	0.06	1.22	0.79	0.83	3.26	22365	2875	18	0	59	0	0	logfile
✔	7LWW	23559	2023-04-26	2021-03-01	3.0	3.20	—	3.2	0.014	1.78	5.0	0.10	12.77	0.01	2.511	0.09	0.55	5.3	94.4	0.3	-0.82	0.75	0.84	3.87	3.2	0.004	0.63	0.0	0.04	15.05	0.00	2.161	5.91	1.81	3.2	96.8	0.0	0.52	1.24	0.79	0.87	3.11	23786	2982	18	0	50	0	0	logfile
✔	7N95	24250	2023-04-20	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.004	1.01	0.0	0.00	4.97	0.00	2.503	6.53	0.00	18.1	81.7	0.2	-3.27	1.81	0.85	0.83	—	7299	2433	2	0	0	0	0	logfile
✘	7M7B	23709	2023-04-20	2021-03-27	2.95	3.73	2.93	3.1	0.012	1.87	5.0	0.11	13.12	0.02	2.512	0.10	0.00	3.5	96.5	0.0	-0.73	0.62	0.86	4.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4898	635	4	0	2	0	0	logfile
✘	7KE9	22835	2023-04-26	2020-10-10	3.08	3.62	—	3.5	0.013	1.74	0.0	0.09	12.23	0.01	2.491	0.11	0.04	5.8	94.0	0.2	-0.81	0.80	0.80	4.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22365	2875	18	0	59	0	0	logfile

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