Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UJB	20795	2021-12-01	2019-10-02	3.51	3.73	—	3.6	0.014	1.44	0.0	0.08	10.89	0.01	1.782	0.33	0.00	2.7	97.3	0.0	0.55	0.77	0.83	3.18	3.6	0.005	0.63	0.0	0.05	14.47	0.00	2.175	7.36	0.21	3.2	96.8	0.0	-0.12	0.72	0.78	0.85	3.08	9193	1180	6	0	23	0	0	logfile
✔	5UAK	8516	2021-12-01	2016-12-19	3.87	4.12	—	4.2	0.008	1.08	0.0	0.06	13.28	0.00	2.474	0.37	0.00	4.3	95.7	0.0	-3.02	0.42	0.62	1.39	4.1	0.003	0.76	0.0	0.04	16.47	0.00	2.110	11.93	0.40	3.3	96.7	0.0	0.66	1.58	0.53	0.76	1.21	9232	1139	2	0	19	0	0	logfile
✔	7MN6	23917	2021-12-01	2021-04-30	3.09	3.68	3.18	3.5	0.012	1.50	0.0	0.08	11.06	0.01	2.392	0.37	0.00	3.5	96.4	0.2	-0.15	0.85	0.85	3.26	3.5	0.003	0.60	0.0	0.04	13.54	0.00	2.251	4.94	0.19	3.6	96.3	0.1	0.21	1.09	0.85	0.86	3.16	9649	1227	8	0	13	0	0	logfile
✔	7NCK	12269	2021-12-01	2021-01-28	3.18	3.22	2.86	3.4	0.011	2.19	6.0	0.10	11.66	0.01	2.583	0.37	3.33	4.0	96.0	0.0	-2.54	0.39	0.71	4.89	3.4	0.002	0.57	0.0	0.06	15.96	0.00	2.157	6.82	0.74	3.0	97.0	0.0	-2.17	0.96	0.36	0.73	2.23	5430	384	6	0	0	0	2778	logfile
✘	7SoD	25267	2021-12-01	2021-10-29	3.2	3.43	3.21	3.4	0.011	1.22	0.0	0.07	9.29	0.01	2.129	0.40	0.49	2.4	97.6	0.0	1.01	0.70	0.86	5.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3830	473	5	0	7	0	0	logfile
✔	6UJC	20796	2021-12-01	2019-10-02	3.56	3.89	—	3.9	0.013	1.39	0.0	0.08	10.57	0.01	1.792	0.44	0.11	3.0	97.0	0.0	0.47	0.72	0.75	2.35	3.9	0.004	0.66	0.0	0.04	13.31	0.00	1.942	7.62	0.00	4.3	95.7	0.0	-0.15	0.75	0.75	0.79	2.10	9209	1184	6	0	23	0	0	logfile
✔	6DJP	7939	2021-12-01	2018-05-25	4.8	5.02	—	4.8	0.011	2.00	0.0	0.08	5.34	0.01	2.368	0.45	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.009	1.27	0.0	0.05	9.47	0.01	2.140	24.14	0.00	24.7	74.7	0.6	-4.67	1.25	0.82	0.77	—	7307	1393	8	0	23	0	0	logfile
✘	7MN5	23916	2021-12-01	2021-04-30	2.93	3.53	3.04	3.3	0.012	1.45	0.0	0.08	10.92	0.01	2.311	0.48	0.00	3.3	96.7	0.0	-0.05	0.82	0.81	3.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9526	1213	8	0	13	0	0	logfile
✔	7ADJ	11727	2021-12-01	2020-09-15	2.8	3.02	2.79	3.0	0.014	1.99	4.0	0.11	14.68	0.01	2.562	0.51	0.18	6.9	93.1	0.0	-2.18	0.34	0.70	3.50	3.0	0.003	0.71	0.0	0.04	17.21	0.00	2.143	6.39	2.39	6.5	93.5	0.0	-1.05	1.26	0.41	0.77	2.89	9710	613	1	0	0	0	4790	logfile
✔	7JZU	22574	2021-12-01	2020-09-02	3.1	3.26	3.10	3.3	0.015	1.33	0.0	0.08	9.63	0.01	2.509	0.52	0.00	3.3	96.7	0.0	0.23	0.69	0.76	4.15	3.3	0.003	0.59	0.0	0.04	14.23	0.00	2.252	4.93	0.00	3.3	96.7	0.0	0.46	1.61	0.70	0.80	4.31	1987	248	3	0	3	0	0	logfile
✔	6U68	20662	2021-12-02	2019-08-29	4.5	4.54	—	4.5	0.006	0.90	0.0	0.06	4.27	0.00	2.419	0.52	0.00	2.6	97.3	0.1	-3.82	0.71	0.71	—	4.5	0.002	0.74	0.0	0.05	4.16	0.00	2.318	2.42	0.00	3.8	96.2	0.0	-0.64	1.80	0.77	0.81	—	10489	2133	8	0	0	0	0	logfile
✘	6VFi	21173	2021-12-02	2020-01-05	4.54	4.63	4.96	4.5	0.018	1.47	0.0	0.09	10.93	0.01	2.449	0.53	0.00	1.3	98.7	0.0	1.21	0.80	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	58488	7560	48	0	0	0	0	logfile
✔	7LY0	23581	2021-12-01	2021-03-05	2.6	2.57	2.63	2.7	0.012	1.17	0.0	0.08	9.71	0.01	2.515	0.55	0.36	1.2	98.8	0.0	1.70	0.61	0.70	5.23	2.7	0.009	0.82	0.0	0.04	15.47	0.01	2.156	8.66	2.50	2.1	97.9	0.0	0.63	1.63	0.70	0.76	4.04	2805	354	5	0	6	0	0	logfile
✔	6BNP	7116	2021-12-01	2017-11-17	4.6	4.61	3.78	4.4	0.015	2.10	24.0	0.11	16.18	0.02	1.814	0.55	1.80	8.3	90.3	1.3	-3.94	0.48	0.46	—	4.4	0.002	0.72	0.0	0.04	14.52	0.00	2.075	10.60	0.00	5.0	94.8	0.3	-0.85	2.30	0.60	0.66	—	56792	7160	22	0	16	0	0	logfile
✔	7LXX	23578	2021-12-01	2021-03-05	3.0	2.96	3.03	3.2	0.012	1.18	0.0	0.06	10.07	0.01	2.519	0.57	0.00	3.6	96.4	0.0	0.69	0.75	0.78	4.22	3.2	0.003	0.63	0.0	0.04	14.25	0.00	2.191	8.69	3.51	2.7	97.3	0.0	-0.17	1.60	0.77	0.82	4.30	2740	352	5	0	4	0	0	logfile
✔	6D3R	7793	2021-12-01	2018-04-16	4.3	4.80	4.40	4.5	0.017	1.75	0.0	0.10	9.07	0.01	2.385	0.57	0.00	1.5	98.5	0.0	0.66	0.66	0.76	—	4.5	0.002	0.65	0.0	0.04	11.84	0.00	2.257	6.64	0.00	2.2	97.8	0.0	1.88	1.21	0.68	0.77	—	7610	1127	1	0	2	0	0	logfile
✔	7R7N	24299	2021-12-01	2021-06-25	3.95	4.08	3.93	4.1	0.010	1.24	0.0	0.07	9.44	0.00	2.553	0.58	0.45	3.2	96.8	0.0	0.00	0.81	0.77	3.23	4.0	0.007	0.89	0.0	0.05	14.57	0.01	2.237	10.85	0.90	7.0	93.0	0.0	-1.21	1.31	0.84	0.81	2.20	2790	391	4	0	3	0	0	logfile
✔	7NCG	12265	2021-12-02	2021-01-28	3.43	3.45	3.16	3.6	0.012	2.20	0.0	0.08	10.99	0.01	2.685	0.58	0.00	7.8	92.2	0.0	-1.51	0.58	0.69	3.64	3.7	0.004	0.70	0.0	0.05	14.48	0.00	1.955	11.04	0.19	9.5	90.5	0.0	-2.80	1.50	0.61	0.73	3.17	10428	732	12	0	0	0	5376	logfile
✔	7RPK	24617	2021-12-01	2021-08-03	2.7	2.92	2.71	2.9	0.015	1.75	1.0	0.10	14.23	0.01	1.695	0.59	0.21	3.0	97.0	0.0	0.02	0.63	0.80	4.47	2.9	0.002	0.59	0.0	0.04	15.70	0.00	2.211	5.50	1.24	2.3	97.7	0.0	2.10	1.02	0.72	0.88	3.63	10018	1104	5	0	40	42	0	logfile
✔	7LXW	23577	2021-12-01	2021-03-05	2.8	3.13	2.86	3.2	0.012	1.20	0.0	0.07	10.03	0.01	2.593	0.61	0.00	1.3	98.7	0.0	0.97	0.78	0.81	5.37	3.2	0.004	0.65	0.0	0.05	15.02	0.01	2.225	10.77	1.52	1.7	98.3	0.0	0.44	1.17	0.73	0.83	5.04	2524	317	5	0	5	0	0	logfile

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