Table showing results for April 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KE4	22831	2021-04-03	2020-10-10	3.21	3.83	—	3.6	0.013	1.77	8.0	0.10	13.76	0.01	2.519	0.13	1.06	6.7	92.9	0.4	-1.54	0.77	0.73	2.97	3.6	0.005	0.66	0.0	0.04	13.07	0.00	2.091	9.35	0.00	5.2	94.8	0.0	-0.34	1.30	0.82	0.82	2.54	23684	2916	21	0	63	0	0	logfile
✔	6UJA	20794	2021-04-01	2019-10-02	3.3	3.49	—	3.4	0.014	1.49	0.0	0.08	10.44	0.01	1.802	0.13	0.14	2.7	97.1	0.2	0.28	0.82	0.82	3.35	3.4	0.002	0.59	0.0	0.04	12.58	0.00	2.124	6.26	0.00	2.7	97.3	0.0	0.48	0.63	0.82	0.84	3.27	8224	1128	5	0	23	0	0	logfile
✔	6ZHX	11220	2021-04-02	2020-06-24	2.5	3.01	2.42	2.8	0.015	2.04	3.0	0.10	27.67	0.03	2.560	0.14	0.00	1.2	98.8	0.0	-0.83	0.80	0.81	5.74	2.7	0.005	0.62	0.0	0.04	28.54	0.00	2.191	2.04	0.48	1.4	98.6	0.0	2.82	1.05	0.87	0.89	4.66	21561	759	12	290	0	0	9607	logfile
✔	6X2A	21999	2021-04-02	2020-05-20	3.3	3.94	3.39	3.8	0.012	1.75	4.0	0.09	12.51	0.01	2.552	0.14	1.64	6.3	93.3	0.4	-1.33	0.81	0.82	3.41	3.8	0.003	0.58	0.0	0.04	12.07	0.00	2.192	6.35	0.00	3.5	96.5	0.0	0.33	2.19	0.81	0.82	2.79	21562	2875	3	0	0	0	0	logfile
✔	7LD1	23279	2021-04-03	2021-01-12	3.4	4.18	—	3.7	0.012	1.92	8.0	0.10	12.73	0.01	2.514	0.15	2.35	9.2	89.2	1.6	-2.21	0.84	0.79	2.71	3.7	0.004	0.68	0.0	0.04	11.67	0.00	2.152	7.72	0.04	7.5	92.4	0.1	-0.76	1.22	0.85	0.83	2.64	29456	4251	27	0	67	0	0	logfile
✔	7KDi	22823	2021-04-03	2020-10-08	3.26	3.83	—	3.7	0.013	1.69	2.0	0.09	12.53	0.01	2.522	0.15	0.27	6.1	93.8	0.1	-0.76	0.79	0.78	3.13	3.7	0.003	0.59	0.0	0.04	12.75	0.00	2.188	5.77	0.00	3.5	96.5	0.0	0.38	0.69	0.82	0.83	2.68	23688	2916	21	0	63	0	0	logfile
✔	7KE6	22832	2021-04-03	2020-10-10	3.1	3.68	—	3.6	0.013	1.75	4.0	0.10	13.65	0.01	2.558	0.15	1.02	6.5	93.2	0.3	-1.42	0.78	0.77	3.34	3.5	0.007	0.70	0.0	0.05	13.24	0.00	2.071	7.40	0.00	4.5	95.5	0.0	-0.03	1.28	0.78	0.82	3.25	23688	2916	21	0	63	0	0	logfile
✔	7K45	22660	2021-04-01	2020-09-14	3.7	3.90	3.76	3.9	0.014	1.42	0.0	0.08	9.47	0.01	2.568	0.18	0.00	2.2	97.8	0.0	0.92	0.79	0.78	4.02	3.9	0.004	0.64	0.0	0.05	11.95	0.01	2.345	7.96	0.00	4.1	95.9	0.0	-0.16	1.68	0.81	0.81	2.87	3038	419	4	0	2	0	0	logfile
✔	7NCJ	12268	2021-04-01	2021-01-28	4.23	3.11	3.97	4.5	0.011	1.60	2.0	0.10	13.68	0.01	2.444	0.18	0.76	7.7	92.0	0.3	-2.36	0.65	0.46	—	4.3	0.003	0.61	1.0	0.05	14.35	0.00	1.943	17.06	0.00	11.7	88.3	0.0	-2.95	1.85	0.71	0.59	—	10860	774	12	0	0	0	5586	logfile
✔	6X79	22083	2021-04-02	2020-05-29	2.9	3.14	3.00	3.1	0.013	1.33	0.0	0.09	10.39	0.01	2.382	0.18	0.26	2.5	97.5	0.0	0.59	0.71	0.74	3.18	3.1	0.004	0.61	0.0	0.05	11.86	0.00	2.170	5.04	0.00	2.2	97.8	0.0	0.23	1.35	0.73	0.81	2.96	22251	2850	15	0	51	0	0	logfile
✔	6oLK	20115	2021-04-02	2019-04-16	4.0	4.14	—	4.1	0.005	1.05	0.0	0.06	5.09	0.01	2.445	0.20	0.00	2.3	97.7	0.0	-0.75	0.56	0.49	—	4.1	0.004	0.85	0.0	0.05	6.56	0.00	2.044	8.89	0.00	14.1	85.9	0.0	-1.97	1.52	0.63	0.60	—	10323	2094	6	0	0	0	0	logfile
✔	6D3R	7793	2021-04-01	2018-04-16	4.3	4.80	4.40	4.5	0.017	1.75	0.0	0.10	9.07	0.01	2.385	0.21	0.00	1.5	98.5	0.0	0.66	0.66	0.76	—	4.5	0.002	0.63	0.0	0.04	12.18	0.00	2.235	6.93	0.00	3.2	96.7	0.1	2.15	1.42	0.67	0.77	—	7610	1127	1	0	2	0	0	logfile
✔	6UQK	20849	2021-04-05	2019-10-20	3.77	4.46	4.11	4.3	0.003	0.53	0.0	0.04	9.91	0.00	2.196	0.22	0.00	5.0	95.0	0.0	-1.84	0.74	0.78	1.71	4.3	0.002	0.52	0.0	0.04	11.02	0.00	2.274	2.91	0.00	5.4	94.6	0.0	1.53	0.61	0.74	0.80	2.02	51567	8032	8	0	188	0	0	logfile
✔	6G8Z	4362	2021-04-02	2018-04-10	3.66	3.88	3.72	3.8	0.005	0.77	0.0	0.04	8.70	0.00	2.362	0.22	0.00	3.8	96.2	0.0	-0.63	0.66	0.79	4.14	3.8	0.003	0.54	0.0	0.04	11.62	0.00	2.143	6.58	0.00	3.1	96.9	0.0	2.30	1.27	0.71	0.85	2.65	15966	1908	6	0	0	0	0	logfile
✔	6UJB	20795	2021-04-01	2019-10-02	3.51	3.73	—	3.6	0.014	1.45	0.0	0.08	10.89	0.01	1.782	0.22	0.00	2.7	97.3	0.0	0.55	0.77	0.83	3.18	3.6	0.004	0.62	0.0	0.04	13.15	0.00	2.155	6.58	0.00	3.4	96.6	0.0	0.00	1.52	0.79	0.85	2.93	9193	1180	6	0	23	0	0	logfile
✔	7KDJ	22824	2021-04-02	2020-10-08	3.49	4.11	—	3.8	0.012	1.68	1.0	0.09	12.17	0.01	1.477	0.23	0.49	6.4	93.2	0.4	-0.75	0.80	0.79	2.84	3.8	0.004	0.60	0.0	0.04	12.34	0.00	2.112	6.71	0.00	3.7	96.3	0.0	0.49	0.57	0.84	0.85	2.13	22365	2875	18	0	59	0	0	logfile
✔	6U7H	20668	2021-04-03	2019-09-02	3.1	3.91	3.18	3.6	0.012	1.77	33.0	0.11	13.25	0.01	2.282	0.24	0.24	4.3	95.7	0.0	-0.94	0.86	0.85	3.84	3.6	0.005	0.60	0.0	0.04	12.29	0.00	2.201	6.48	0.00	3.4	96.6	0.0	0.43	1.24	0.86	0.85	3.32	23394	2895	6	0	81	0	0	logfile
✔	6WPS	21864	2021-04-03	2020-04-27	3.1	3.36	3.25	3.3	0.013	1.32	0.0	0.09	10.34	0.01	2.364	0.24	0.10	2.4	97.6	0.0	0.67	0.73	0.74	3.01	3.3	0.004	0.60	0.0	0.04	12.68	0.00	2.178	7.53	0.00	3.4	96.6	0.0	0.20	1.66	0.78	0.81	3.27	28116	3540	27	0	75	0	0	logfile
✔	6WJ5	21688	2021-04-04	2020-04-11	3.6	3.81	—	3.8	0.013	1.88	4.0	0.10	13.46	0.01	2.369	0.25	0.05	3.8	95.7	0.5	-2.50	0.51	0.70	3.53	3.8	0.003	0.54	0.0	0.04	14.59	0.00	2.057	7.41	0.00	2.8	97.2	0.0	1.23	1.48	0.60	0.78	2.65	36320	2248	8	0	4	0	18268	logfile
✔	7B9V	12106	2021-04-04	2020-12-14	2.8	2.94	—	2.9	0.010	1.40	6.0	0.10	14.61	0.01	1.604	0.25	0.17	2.5	97.4	0.1	-0.42	0.51	0.65	2.27	2.9	0.005	0.64	0.0	0.04	13.87	0.00	1.916	8.37	0.03	2.7	97.3	0.0	1.12	0.73	0.61	0.74	2.13	109105	12183	58	545	150	0	0	logfile

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