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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7LYM | 23595 | 2024-03-19 | 2021-03-07 | 3.57 | 3.82 | — | 3.7 | 0.013 | 1.73 | 2.0 | 0.10 | 12.92 | 0.01 | 2.536 | 0.04 | 0.84 | 5.3 | 94.4 | 0.4 | -1.08 | 0.80 | 0.83 | 2.78 | 3.7 | 0.005 | 0.65 | 0.0 | 0.05 | 14.28 | 0.00 | 2.112 | 6.11 | 1.76 | 4.0 | 96.0 | 0.0 | 0.19 | 0.64 | 0.81 | 0.83 | 2.39 | 23916 | 3006 | 6 | 0 | 33 | 0 | 0 | logfile |
✔ | 7LWQ | 23554 | 2024-03-17 | 2021-03-01 | 3.44 | 3.73 | — | 3.6 | 0.013 | 1.77 | 3.0 | 0.10 | 13.59 | 0.01 | 2.519 | 0.05 | 1.18 | 6.6 | 93.1 | 0.4 | -1.34 | 0.77 | 0.79 | 2.74 | 3.6 | 0.006 | 0.70 | 0.0 | 0.05 | 14.80 | 0.00 | 2.097 | 8.60 | 1.85 | 5.1 | 94.9 | 0.0 | -0.24 | 1.25 | 0.78 | 0.82 | 2.16 | 19273 | 2425 | 7 | 0 | 29 | 0 | 0 | logfile |
✔ | 8B7V | 15903 | 2024-03-14 | 2022-10-03 | 3.0 | 3.71 | 2.99 | 3.4 | 0.015 | 1.80 | 8.0 | 0.11 | 15.92 | 0.02 | 2.409 | 0.05 | 1.76 | 2.6 | 96.7 | 0.6 | -0.16 | 0.76 | 0.73 | 6.06 | 3.4 | 0.004 | 0.65 | 0.0 | 0.04 | 16.06 | 0.00 | 2.163 | 6.28 | 0.49 | 2.0 | 97.9 | 0.1 | -0.61 | 1.03 | 0.84 | 0.90 | 5.60 | 10050 | 1263 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LWP | 23553 | 2024-03-19 | 2021-03-01 | 3.01 | 3.22 | — | 3.2 | 0.013 | 1.80 | 8.0 | 0.10 | 13.46 | 0.01 | 2.498 | 0.06 | 1.14 | 5.6 | 93.9 | 0.5 | -1.08 | 0.74 | 0.81 | 3.01 | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 14.35 | 0.00 | 2.177 | 4.92 | 1.30 | 3.6 | 96.4 | 0.0 | 0.53 | 1.24 | 0.76 | 0.84 | 2.69 | 23499 | 2982 | 6 | 0 | 31 | 0 | 0 | logfile |
✔ | 7LWV | 23558 | 2024-03-19 | 2021-03-01 | 3.12 | 3.33 | — | 3.3 | 0.013 | 1.78 | 4.0 | 0.10 | 12.53 | 0.01 | 2.510 | 0.06 | 0.63 | 4.8 | 94.9 | 0.3 | -0.77 | 0.76 | 0.84 | 3.95 | 3.3 | 0.004 | 0.62 | 0.0 | 0.05 | 14.32 | 0.00 | 2.117 | 4.48 | 1.45 | 3.2 | 96.8 | 0.0 | 0.43 | 1.23 | 0.77 | 0.86 | 3.19 | 23561 | 2980 | 6 | 0 | 34 | 0 | 0 | logfile |
✔ | 7LWK | 23548 | 2024-03-19 | 2021-03-01 | 2.92 | 3.11 | — | 3.1 | 0.013 | 1.77 | 3.0 | 0.10 | 12.79 | 0.01 | 2.508 | 0.06 | 0.65 | 4.3 | 95.6 | 0.1 | -0.78 | 0.71 | 0.82 | 3.51 | 3.1 | 0.007 | 0.87 | 2.0 | 0.05 | 14.89 | 0.01 | 2.030 | 6.54 | 1.83 | 3.1 | 96.9 | 0.0 | 0.60 | 1.23 | 0.73 | 0.85 | 2.79 | 23847 | 3003 | 6 | 0 | 30 | 0 | 0 | logfile |
✔ | 8i4Z | 35189 | 2024-03-25 | 2023-01-21 | 3.97 | 3.62 | 3.92 | 3.8 | 0.012 | 1.81 | 8.0 | 0.10 | 12.61 | 0.02 | 2.548 | 0.06 | 0.74 | 3.8 | 96.2 | 0.0 | -0.79 | 0.81 | 0.73 | 2.91 | 3.7 | 0.005 | 0.67 | 0.0 | 0.04 | 14.17 | 0.01 | 1.859 | 6.62 | 1.12 | 5.7 | 94.3 | 0.0 | -0.79 | 1.59 | 0.84 | 0.80 | 2.06 | 48977 | 3374 | 3 | 0 | 1 | 0 | 24348 | logfile |
✔ | 7ToV | 26039 | 2024-03-19 | 2022-01-24 | 3.16 | 3.39 | — | 3.2 | 0.014 | 1.80 | 5.0 | 0.10 | 12.15 | 0.01 | 2.515 | 0.07 | 0.89 | 5.8 | 93.7 | 0.4 | -0.81 | 0.83 | 0.86 | 4.13 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 12.81 | 0.00 | 2.114 | 4.23 | 1.11 | 4.0 | 95.9 | 0.1 | 0.33 | 1.19 | 0.84 | 0.87 | 3.32 | 23199 | 2983 | 18 | 0 | 58 | 0 | 0 | logfile |
✔ | 7TP8 | 26048 | 2024-03-19 | 2022-01-25 | 3.4 | 3.77 | — | 3.4 | 0.013 | 1.76 | 6.0 | 0.10 | 12.52 | 0.01 | 2.519 | 0.07 | 0.98 | 6.3 | 92.8 | 0.9 | -0.98 | 0.84 | 0.85 | 4.23 | 3.4 | 0.004 | 0.61 | 0.0 | 0.04 | 12.89 | 0.00 | 2.227 | 4.27 | 0.64 | 4.8 | 95.0 | 0.1 | 0.15 | 1.61 | 0.85 | 0.87 | 2.94 | 23199 | 2983 | 18 | 0 | 58 | 0 | 0 | logfile |
✔ | 5U1D | 8482 | 2024-03-11 | 2016-11-28 | 3.97 | 4.06 | — | 4.3 | 0.007 | 1.17 | 0.0 | 0.05 | 12.05 | 0.00 | 2.452 | 0.07 | 0.84 | 5.7 | 94.1 | 0.2 | -2.16 | 0.36 | 0.48 | 1.30 | 4.1 | 0.004 | 0.80 | 0.0 | 0.04 | 16.13 | 0.00 | 1.995 | 14.24 | 7.60 | 4.5 | 95.4 | 0.1 | 1.09 | 1.02 | 0.53 | 0.75 | 1.29 | 7815 | 1168 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZJL | 14750 | 2024-03-15 | 2022-04-11 | 2.6 | 2.76 | 2.80 | 2.7 | 0.012 | 1.76 | 11.0 | 0.09 | 12.92 | 0.01 | 2.495 | 0.07 | 0.48 | 4.0 | 95.9 | 0.0 | -0.24 | 0.68 | 0.69 | 3.58 | 2.7 | 0.006 | 0.66 | 0.0 | 0.05 | 14.99 | 0.00 | 1.929 | 5.23 | 1.60 | 3.7 | 96.3 | 0.0 | -0.13 | 0.85 | 0.76 | 0.80 | 3.20 | 69412 | 4551 | 9 | 0 | 0 | 0 | 34272 | logfile |
✔ | 8TA2 | 41126 | 2024-03-16 | 2023-06-26 | 2.74 | 2.88 | 2.77 | 2.9 | 0.013 | 1.91 | 2.0 | 0.09 | 13.79 | 0.02 | 2.551 | 0.07 | 1.74 | 2.7 | 97.1 | 0.1 | -1.61 | 0.51 | 0.73 | 3.48 | 2.9 | 0.003 | 0.58 | 0.0 | 0.04 | 15.53 | 0.00 | 2.256 | 4.32 | 0.94 | 2.9 | 97.1 | 0.0 | 0.89 | 1.46 | 0.54 | 0.75 | 1.83 | 14605 | 926 | 4 | 0 | 4 | 0 | 7411 | logfile |
✘ | 7TLD | 25988 | 2024-03-19 | 2022-01-18 | 2.89 | 3.35 | — | 3.3 | 0.013 | 1.80 | 0.0 | 0.09 | 13.31 | 0.01 | 2.524 | 0.07 | 0.94 | 5.2 | 94.6 | 0.2 | -1.25 | 0.33 | 0.48 | 3.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22812 | 2916 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TLC | 25987 | 2024-03-19 | 2022-01-18 | 2.83 | 3.28 | — | 3.2 | 0.013 | 1.82 | 3.0 | 0.10 | 13.37 | 0.02 | 2.518 | 0.07 | 1.54 | 5.3 | 94.5 | 0.2 | -1.18 | 0.34 | 0.47 | 4.12 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 15.12 | 0.00 | 2.130 | 5.75 | 2.12 | 3.2 | 96.8 | 0.0 | 0.31 | 0.54 | 0.50 | 0.70 | 3.41 | 23058 | 2948 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TK8 | 25960 | 2024-03-18 | 2022-01-17 | 4.7 | 7.79 | 12.86 | 4.4 | 0.019 | 2.21 | 0.0 | 0.00 | 6.68 | 0.01 | 2.390 | 0.08 | 0.00 | 4.1 | 94.4 | 1.5 | -0.46 | 0.60 | 0.62 | — | 4.4 | 0.007 | 1.06 | 0.0 | 0.00 | 6.46 | 0.01 | 1.965 | 24.73 | 0.00 | 11.5 | 88.2 | 0.3 | -0.96 | 1.58 | 0.81 | 0.81 | — | 20227 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TK0 | 25948 | 2024-03-18 | 2022-01-17 | 4.4 | 6.63 | 4.39 | 4.1 | 0.019 | 2.21 | 0.0 | 0.00 | 6.55 | 0.01 | 2.394 | 0.08 | 0.00 | 3.9 | 94.5 | 1.5 | -0.40 | 0.58 | 0.62 | — | 4.1 | 0.003 | 0.80 | 0.0 | 0.00 | 5.24 | 0.00 | 2.105 | 7.94 | 0.00 | 8.9 | 90.9 | 0.3 | -0.45 | 0.81 | 0.83 | 0.81 | — | 20220 | 5054 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CYR | 27082 | 2024-03-10 | 2022-05-24 | 4.2 | 3.54 | 3.92 | 4.0 | 0.003 | 0.62 | 0.0 | 0.05 | 8.97 | 0.00 | 2.654 | 0.08 | 2.00 | 4.4 | 95.6 | 0.0 | -2.37 | 0.46 | 0.55 | — | 4.0 | 0.007 | 0.99 | 0.0 | 0.06 | 13.11 | 0.00 | 1.994 | 19.57 | 0.00 | 11.8 | 88.2 | 0.0 | -3.97 | 2.77 | 0.54 | 0.70 | — | 5964 | 864 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8G3N | 29705 | 2024-03-18 | 2023-02-08 | 2.9 | 3.49 | 2.87 | 3.2 | 0.016 | 1.76 | 0.0 | 0.09 | 14.52 | 0.01 | 2.302 | 0.08 | 0.00 | 4.9 | 94.9 | 0.2 | -0.63 | 0.88 | 0.91 | 4.67 | 3.2 | 0.003 | 0.71 | 0.0 | 0.04 | 13.83 | 0.01 | 2.173 | 4.48 | 1.87 | 3.5 | 96.4 | 0.2 | -0.19 | 0.56 | 0.84 | 0.88 | 3.39 | 20321 | 2512 | 39 | 0 | 81 | 0 | 0 | logfile |
✔ | 7M71 | 23707 | 2024-03-11 | 2021-03-26 | 2.66 | 3.67 | 2.73 | 3.0 | 0.013 | 1.86 | 5.0 | 0.11 | 12.98 | 0.02 | 2.531 | 0.08 | 0.41 | 5.0 | 95.0 | 0.0 | -0.93 | 0.52 | 0.79 | 3.87 | 3.0 | 0.002 | 0.62 | 0.0 | 0.04 | 13.65 | 0.00 | 2.177 | 6.89 | 0.68 | 3.1 | 96.9 | 0.0 | -0.17 | 1.34 | 0.59 | 0.90 | 3.75 | 6646 | 852 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7ToY | 26041 | 2024-03-19 | 2022-01-24 | 3.53 | 3.95 | — | 3.5 | 0.014 | 1.77 | 4.0 | 0.10 | 13.12 | 0.01 | 2.517 | 0.08 | 1.50 | 6.8 | 92.8 | 0.4 | -1.10 | 0.85 | 0.84 | 2.97 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 13.60 | 0.00 | 2.178 | 6.39 | 1.54 | 4.5 | 95.4 | 0.1 | 0.26 | 0.49 | 0.85 | 0.85 | 2.07 | 24673 | 3049 | 20 | 0 | 61 | 0 | 0 | logfile |