Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KDJ	22824	2023-04-26	2020-10-08	3.49	4.11	—	3.8	0.013	1.69	1.0	0.10	12.36	0.01	1.477	0.25	0.49	6.4	93.2	0.4	-0.75	0.80	0.79	2.84	3.8	0.002	0.59	0.0	0.04	13.66	0.00	2.204	5.88	0.13	3.6	96.4	0.0	0.57	0.54	0.84	0.84	2.15	22365	2875	18	0	59	0	0	logfile
✔	7RLU	24547	2023-04-24	2021-07-26	2.9	2.95	2.85	3.0	0.010	1.28	0.0	0.07	13.03	0.01	2.582	0.25	0.31	5.3	94.0	0.7	-3.29	0.73	0.82	4.31	3.0	0.006	0.69	0.0	0.04	16.97	0.00	2.256	3.48	1.76	3.9	96.1	0.0	-0.50	1.64	0.75	0.88	3.08	18188	2332	12	0	8	28	0	logfile
✔	7KQE	22997	2023-04-25	2020-11-15	2.88	3.80	2.90	3.4	0.012	1.80	8.0	0.10	13.99	0.01	2.478	0.25	1.08	6.3	93.6	0.1	-1.09	0.73	0.37	2.42	2.9	0.003	0.59	0.0	0.04	14.25	0.00	2.025	4.55	0.77	4.4	95.6	0.0	-0.11	0.67	0.87	0.83	2.31	68370	4467	9	0	0	0	33744	logfile
✔	6X79	22083	2023-04-26	2020-05-29	2.9	3.14	3.00	3.1	0.014	1.35	0.0	0.10	10.44	0.01	2.382	0.25	0.26	2.5	97.5	0.0	0.59	0.71	0.74	3.18	3.1	0.003	0.61	0.0	0.04	14.72	0.00	2.210	5.61	2.70	2.2	97.8	0.0	0.29	1.35	0.72	0.80	2.66	22251	2850	15	0	51	0	0	logfile
✔	7SCY	25042	2023-04-26	2021-09-29	4.1	6.14	—	5.6	0.014	1.93	1.0	0.09	27.69	0.04	2.508	0.26	0.56	2.8	97.2	0.0	-0.81	0.82	0.67	—	5.5	0.009	0.77	0.0	0.05	27.61	0.01	1.778	29.96	0.00	5.4	94.6	0.0	-1.01	1.09	0.87	0.79	—	23206	850	11	294	0	0	10436	logfile
✔	5UAR	8461	2023-04-21	2016-12-19	3.73	4.36	—	4.4	0.008	1.18	0.0	0.06	13.30	0.00	2.393	0.26	1.06	7.4	92.5	0.1	-3.58	0.58	0.77	1.39	4.4	0.003	0.72	0.0	0.04	16.08	0.00	2.142	10.48	0.39	4.6	95.4	0.0	-0.29	1.53	0.61	0.80	0.97	9489	1184	1	0	2	0	0	logfile
✔	7B9V	12106	2023-04-20	2020-12-14	2.8	2.94	—	2.9	0.010	1.40	6.0	0.10	14.61	0.01	1.604	0.26	0.17	2.5	97.4	0.1	-0.42	0.51	0.65	2.27	2.9	0.004	0.71	0.0	0.04	16.71	0.00	1.863	10.06	1.88	2.6	97.4	0.0	1.11	0.71	0.57	0.71	1.73	109105	12183	58	545	150	0	0	logfile
✔	7TP0	26043	2023-04-27	2022-01-24	3.57	3.99	—	3.6	0.014	1.76	4.0	0.10	13.64	0.01	2.527	0.27	1.62	6.6	92.6	0.8	-1.08	0.85	0.85	2.66	3.6	0.006	0.69	0.0	0.04	14.26	0.00	1.983	7.50	0.15	5.7	94.1	0.2	-0.07	1.19	0.86	0.86	2.17	24589	3040	20	0	61	0	0	logfile
✔	7LJR	23400	2023-04-27	2021-01-30	3.66	3.92	—	3.7	0.013	1.83	9.0	0.10	13.96	0.01	2.509	0.27	1.12	9.2	90.0	0.8	-1.91	0.69	0.65	1.95	3.7	0.003	0.66	0.0	0.04	14.72	0.00	2.095	10.58	0.03	5.9	94.0	0.1	-0.72	0.66	0.78	0.77	1.44	26291	3378	5	0	0	0	0	logfile
✔	6SKL	10227	2023-04-23	2019-08-16	3.7	3.87	—	3.7	0.013	1.93	50.0	0.11	15.18	0.02	1.901	0.27	0.09	3.3	96.7	0.0	-1.69	0.71	0.72	1.97	3.7	0.004	0.63	0.0	0.04	16.54	0.00	1.787	8.63	0.19	4.0	96.0	0.0	0.38	3.48	0.74	0.78	1.67	118181	7251	24	59	11	0	58997	logfile
✔	7LYP	23598	2023-04-26	2021-03-07	4.05	4.38	—	4.1	0.013	1.73	0.0	0.09	13.10	0.01	2.509	0.28	0.71	6.7	92.7	0.6	-1.22	0.82	0.81	—	4.1	0.002	0.61	0.0	0.04	12.67	0.00	2.106	8.20	0.00	4.4	95.6	0.0	0.32	1.27	0.82	0.81	—	23504	2985	6	0	28	0	0	logfile
✔	7KDG	22821	2023-04-26	2020-10-08	3.01	3.39	—	3.3	0.014	1.76	3.0	0.10	12.77	0.01	2.515	0.28	0.31	6.2	93.5	0.3	-0.92	0.77	0.78	3.64	3.3	0.004	0.63	0.0	0.04	14.50	0.00	2.111	5.92	0.12	3.8	96.2	0.0	0.23	1.23	0.77	0.83	2.77	23700	2916	21	0	63	0	0	logfile
✔	8DMB	27533	2023-04-23	2022-07-08	3.1	3.10	3.12	3.1	0.005	0.91	0.0	0.05	15.85	0.01	2.091	0.28	0.74	2.5	97.5	0.0	0.39	0.69	0.81	4.57	3.1	0.003	0.55	0.0	0.03	16.17	0.01	1.969	3.37	0.00	3.1	96.9	0.0	0.52	0.57	0.70	0.83	4.27	14225	328	5	275	2	0	5728	logfile
✔	6MB3	9065	2023-04-24	2018-08-29	3.37	3.47	—	3.4	0.020	1.75	0.0	0.09	9.45	0.01	2.273	0.28	0.00	3.7	96.1	0.1	0.34	0.73	0.86	4.52	3.4	0.003	0.66	0.0	0.04	14.01	0.00	2.193	7.66	0.23	5.5	94.4	0.0	0.04	1.27	0.74	0.88	3.63	16423	2178	19	0	0	0	0	logfile
✔	6WPS	21864	2023-04-28	2020-04-27	3.1	3.36	3.25	3.3	0.013	1.34	0.0	0.09	10.40	0.01	2.364	0.29	0.10	2.4	97.6	0.0	0.67	0.73	0.74	3.01	3.3	0.003	0.63	0.0	0.04	14.78	0.00	2.061	7.88	0.14	2.9	97.1	0.0	-0.01	1.66	0.78	0.82	2.91	28116	3540	27	0	75	0	0	logfile
✔	7Z8L	14556	2023-04-24	2022-03-17	4.9	4.50	4.38	4.0	0.012	1.30	0.0	0.09	6.41	0.01	2.296	0.29	0.00	1.2	98.8	0.0	1.37	0.76	0.77	—	4.0	0.005	0.71	0.0	0.04	7.01	0.00	1.822	7.86	0.00	6.5	93.5	0.0	0.20	0.73	0.84	0.81	—	16513	3311	3	0	5	0	0	logfile
✔	7L7T	23218	2023-04-23	2020-12-30	3.7	4.14	3.63	3.9	0.023	1.69	0.0	0.16	10.29	0.01	2.419	0.30	0.00	1.2	98.8	0.0	0.98	0.85	0.85	2.90	3.8	0.005	0.65	0.0	0.04	13.99	0.00	2.225	7.63	0.32	3.2	96.8	0.0	1.05	0.75	0.85	0.85	2.52	15423	1770	39	0	102	0	0	logfile
✔	7LYQ	23599	2023-04-26	2021-03-07	3.34	3.59	—	3.6	0.013	1.74	1.0	0.10	12.83	0.01	2.521	0.30	0.43	5.2	94.3	0.4	-0.83	0.77	0.83	3.22	3.5	0.005	0.63	0.0	0.04	14.34	0.00	2.202	5.36	0.24	3.7	96.3	0.0	0.32	1.24	0.79	0.86	2.66	23641	2985	6	0	38	0	0	logfile
✔	6PZK	20536	2023-04-22	2019-08-01	3.2	3.65	—	3.6	0.012	1.93	16.0	0.12	14.42	0.02	2.533	0.30	1.95	3.8	96.2	0.0	-2.86	0.65	0.75	2.57	3.6	0.003	0.62	0.0	0.04	16.20	0.00	2.151	9.82	0.34	2.2	97.8	0.0	1.46	1.70	0.73	0.82	1.75	13153	1624	5	0	0	0	0	logfile
✔	7KDK	22825	2023-04-26	2020-10-08	2.8	3.18	—	3.1	0.014	1.78	8.0	0.10	13.03	0.01	2.490	0.30	0.12	5.2	94.7	0.1	-0.98	0.75	0.77	3.89	3.1	0.003	0.60	0.0	0.04	15.29	0.00	2.146	6.89	1.49	2.8	97.2	0.0	0.33	0.66	0.72	0.80	3.19	23688	2916	21	0	63	0	0	logfile

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