Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A6A	11668	2023-07-14	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.68	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.003	0.59	0.0	0.04	15.31	0.00	2.163	2.66	1.82	1.8	98.2	0.0	4.55	0.44	0.69	0.82	8.90	41613	4152	72	0	32	4621	0	logfile
✔	7K3V	22657	2023-07-17	2020-09-14	1.34	1.44	—	1.4	0.005	0.79	0.0	0.04	21.25	0.00	0.211	2.71	0.00	1.2	98.8	0.0	3.60	0.69	0.78	8.90	1.4	0.005	0.79	0.0	0.05	14.91	0.01	1.971	1.78	0.00	1.2	98.8	0.0	3.72	0.35	0.73	0.83	8.91	38406	4128	72	0	334	2672	0	logfile
✔	7K3W	22658	2023-07-17	2020-09-14	1.36	1.48	—	1.5	0.005	0.76	0.0	0.04	20.58	0.00	1.934	3.30	0.00	1.8	98.2	0.0	3.35	0.73	0.80	9.05	1.5	0.004	0.67	0.0	0.04	14.88	0.00	2.032	2.26	0.00	1.8	98.2	0.0	4.02	0.24	0.75	0.82	9.16	39086	4128	72	0	382	2680	0	logfile
✔	8CPU	16786	2023-07-16	2023-03-03	1.76	1.54	1.80	1.6	0.004	0.71	0.0	0.05	14.91	0.01	1.976	4.95	0.00	1.0	99.0	0.0	2.29	0.71	0.77	8.55	1.6	0.004	0.62	0.0	0.04	15.65	0.00	2.051	5.31	0.57	1.8	98.2	0.0	3.90	0.29	0.73	0.80	8.29	35823	4152	72	0	38	1705	0	logfile
✔	8CPM	16783	2023-07-16	2023-03-03	1.81	1.57	1.84	1.6	0.005	0.85	0.0	0.05	15.21	0.01	1.916	7.77	0.00	1.0	99.0	0.0	2.32	0.70	0.75	7.56	1.6	0.003	0.60	0.0	0.04	16.38	0.00	2.043	7.22	0.11	2.3	97.7	0.0	4.30	0.37	0.71	0.77	7.46	36090	4152	72	0	38	1972	0	logfile
✔	8CPX	16789	2023-07-16	2023-03-03	1.76	1.61	1.78	1.6	0.005	0.80	0.0	0.06	14.97	0.01	2.063	5.37	0.00	1.0	99.0	0.0	2.18	0.75	0.81	8.02	1.7	0.002	0.52	0.0	0.04	15.88	0.00	2.212	2.81	1.31	1.8	98.2	0.0	4.58	0.39	0.78	0.85	7.90	35827	4152	72	0	38	1709	0	logfile
✔	6Z9F	11122	2023-07-14	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.74	48.0	0.10	15.51	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.003	0.63	0.0	0.04	14.99	0.00	2.122	4.64	3.05	1.8	98.2	0.0	4.60	0.98	0.85	0.86	8.43	41020	4152	72	0	32	4172	0	logfile
✔	8CPW	16788	2023-07-16	2023-03-03	1.79	1.64	1.78	1.7	0.005	0.84	0.0	0.06	14.35	0.01	2.180	3.39	0.63	1.0	99.0	0.0	2.13	0.77	0.83	8.34	1.6	0.004	0.71	0.0	0.04	14.75	0.00	2.215	4.05	0.41	1.2	98.8	0.0	3.93	0.22	0.77	0.85	7.73	36004	4152	72	0	38	1886	0	logfile
✔	7QQ3	14121	2023-07-15	2022-01-06	2.1	1.65	2.18	1.9	0.008	0.76	5.0	0.05	14.94	0.02	1.832	2.70	4.22	3.6	96.0	0.4	-0.31	0.50	0.61	3.73	1.9	0.006	1.10	4.0	0.05	15.30	0.01	1.747	6.99	2.69	3.9	95.9	0.2	-0.64	1.23	0.64	0.70	4.15	87594	2903	35	3016	154	28	0	logfile
✔	7YK5	33887	2023-07-18	2022-07-21	2.0	1.66	—	1.9	0.014	1.49	0.0	0.09	17.33	0.00	2.157	4.91	7.75	4.0	96.0	0.0	-2.45	0.38	0.48	6.60	1.9	0.004	0.74	0.0	0.05	16.52	0.01	2.340	1.95	1.52	2.7	97.3	0.0	0.05	0.46	0.81	0.84	6.66	39948	5064	36	0	8	0	0	logfile
✔	8CPS	16784	2023-07-16	2023-03-03	1.82	1.69	1.90	1.7	0.003	0.66	0.0	0.05	15.42	0.01	2.116	2.82	0.00	1.0	99.0	0.0	2.28	0.75	0.81	8.54	1.7	0.003	0.58	0.0	0.04	17.00	0.00	2.154	4.46	0.16	1.2	98.8	0.0	4.78	0.30	0.77	0.83	8.39	36034	4152	72	0	38	1916	0	logfile
✔	7T2G	25612	2023-07-04	2021-12-04	2.5	1.71	—	1.4	0.009	1.14	0.0	0.05	12.09	0.01	2.214	13.39	1.00	3.5	96.5	0.0	0.61	0.80	0.81	5.15	1.4	0.004	0.81	0.0	0.04	15.33	0.00	2.126	11.11	1.57	2.7	97.3	0.0	0.65	0.36	0.80	0.81	4.61	6922	898	4	0	3	8	0	logfile
✔	7VZ4	32220	2023-07-06	2021-11-15	1.89	1.72	—	1.9	0.010	1.17	0.0	0.08	29.00	0.00	2.167	2.63	0.97	1.6	98.4	0.0	0.11	0.75	0.82	7.08	1.9	0.004	0.66	0.0	0.04	28.48	0.00	2.304	4.22	0.49	0.5	99.5	0.0	2.82	0.80	0.78	0.86	7.64	11843	746	10	290	0	0	0	logfile
✔	7M4Y	23670	2023-07-15	2021-03-22	2.5	1.72	—	1.5	0.006	0.58	2.0	0.03	16.28	0.02	1.783	3.47	2.14	2.5	97.3	0.2	1.41	0.77	0.73	3.74	1.5	0.006	0.83	0.0	0.05	16.57	0.01	1.633	4.85	3.93	3.2	96.7	0.1	0.24	0.30	0.79	0.77	3.86	139817	5511	80	4453	200	1044	0	logfile
✔	8CPT	16785	2023-07-16	2023-03-03	1.79	1.72	1.81	1.8	0.004	0.72	0.0	0.05	15.65	0.01	2.157	1.26	0.49	1.0	99.0	0.0	2.30	0.80	0.85	8.36	1.8	0.003	0.58	0.0	0.04	16.07	0.00	2.206	1.20	0.65	1.8	98.2	0.0	4.32	0.33	0.81	0.87	8.14	36024	4152	72	0	38	1906	0	logfile
✔	7N8o	24239	2023-07-04	2021-06-15	1.93	1.73	—	1.9	0.025	2.40	0.0	0.11	20.28	0.01	1.522	14.77	1.91	3.0	96.9	0.1	0.75	0.73	0.75	5.48	1.8	0.004	0.81	0.0	0.05	18.74	0.01	2.000	12.74	1.66	3.0	97.0	0.0	0.83	0.34	0.77	0.80	5.41	54656	5544	113	0	228	1236	0	logfile
✔	8CPV	16787	2023-07-16	2023-03-03	1.76	1.73	1.80	1.7	0.006	0.91	0.0	0.07	14.41	0.01	2.182	2.58	0.00	1.0	99.0	0.0	2.15	0.78	0.84	8.93	1.7	0.002	0.49	0.0	0.03	14.99	0.00	2.274	3.00	0.00	1.8	98.2	0.0	4.87	1.19	0.81	0.87	8.51	35855	4152	72	0	38	1737	0	logfile
✔	7VD9	31911	2023-07-08	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	7.80	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.003	0.57	0.0	0.04	17.52	0.01	2.206	7.90	2.62	3.9	96.1	0.0	0.00	0.30	0.58	0.73	3.61	16426	1991	8	0	8	0	0	logfile
✔	7M4X	23669	2023-07-15	2021-03-22	2.66	1.75	—	1.6	0.006	0.56	0.0	0.03	15.11	0.01	1.789	3.62	0.00	2.5	97.4	0.1	1.32	0.77	0.73	3.46	1.6	0.004	0.72	0.0	0.04	16.10	0.01	1.684	5.41	2.69	3.2	96.7	0.1	0.26	0.35	0.79	0.76	3.35	139446	5528	73	4453	194	552	0	logfile
✔	7UUR	26801	2023-07-07	2022-04-28	1.67	1.76	1.67	1.8	0.061	2.45	3.0	0.98	14.57	0.01	1.674	7.19	0.44	2.5	97.2	0.2	-0.89	0.76	0.87	7.87	1.8	0.007	2.49	0.0	0.07	14.70	0.01	1.611	10.87	0.29	2.1	97.9	0.0	0.19	0.27	0.77	0.88	7.79	13683	1668	12	0	18	603	0	logfile

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