Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A6A	11668	2022-04-07	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.68	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.003	0.57	0.0	0.04	15.15	0.00	2.188	2.37	1.82	1.8	98.2	0.0	4.61	0.45	0.69	0.82	8.90	41613	4152	72	0	32	4621	0	logfile
✘	7A4M	11638	2022-04-14	2020-08-20	1.22	1.13	1.28	1.2	0.010	1.38	0.0	0.09	13.82	0.01	0.001	2.76	1.18	1.8	98.2	0.0	2.86	0.40	0.57	8.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76248	4128	24	0	48	2640	36216	logfile
✔	7A6B	11669	2022-04-07	2020-08-25	1.33	1.21	—	1.3	0.015	1.60	24.0	0.12	15.34	0.01	1.893	4.97	4.17	1.2	98.8	0.0	2.52	0.52	0.65	9.13	1.3	0.003	0.72	0.0	0.04	14.99	0.01	2.129	3.72	1.79	1.8	98.2	0.0	4.24	0.42	0.76	0.86	9.05	41494	4152	72	0	32	3854	0	logfile
✔	7RRP	24665	2022-04-06	2021-08-10	1.27	1.32	—	1.4	0.003	0.61	0.0	0.04	14.22	0.00	2.007	2.86	0.00	2.4	97.6	0.0	4.01	0.63	0.76	9.05	1.4	0.004	0.72	0.0	0.04	14.38	0.01	2.040	1.87	0.00	1.8	98.2	0.0	3.84	0.41	0.70	0.83	9.05	72254	4128	72	0	278	2496	34080	logfile
✔	7VD8	31910	2022-04-08	2021-09-06	1.96	1.42	2.01	1.7	0.002	0.54	0.0	0.04	16.17	0.00	2.013	2.67	0.03	2.2	97.8	0.0	5.39	0.75	0.80	7.92	1.7	0.002	0.55	0.0	0.04	16.50	0.00	2.001	2.31	0.05	1.5	98.5	0.0	5.41	0.23	0.72	0.78	8.03	38201	4128	72	0	329	2472	0	logfile
✔	7K3V	22657	2022-04-08	2020-09-14	1.34	1.44	—	1.4	0.005	0.79	0.0	0.04	14.68	0.00	0.211	2.71	0.00	1.2	98.8	0.0	3.60	0.69	0.78	8.90	1.4	0.005	0.76	0.0	0.04	14.89	0.01	1.975	1.80	0.00	1.2	98.8	0.0	3.84	0.31	0.73	0.83	8.91	38406	4128	72	0	334	2672	0	logfile
✔	7K3W	22658	2022-04-09	2020-09-14	1.36	1.48	—	1.5	0.005	0.76	0.0	0.04	14.50	0.00	1.934	3.30	0.00	1.8	98.2	0.0	3.35	0.73	0.80	9.05	1.5	0.003	0.65	0.0	0.04	14.77	0.00	2.038	2.63	0.00	1.8	98.2	0.0	4.21	0.17	0.75	0.82	9.20	39086	4128	72	0	382	2680	0	logfile
✔	6Z9F	11122	2022-04-07	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.74	48.0	0.10	15.51	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.002	0.57	0.0	0.04	15.00	0.00	2.179	4.97	3.05	1.8	98.2	0.0	4.97	0.98	0.84	0.85	8.54	41020	4152	72	0	32	4172	0	logfile
✔	7QK5	14038	2022-04-05	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.10	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.004	0.64	0.0	0.05	18.34	0.01	2.238	4.01	2.74	3.7	96.3	0.0	-1.87	1.49	0.36	0.83	7.41	10485	666	18	0	36	0	5337	logfile
✔	7K00	22586	2022-04-13	2020-09-02	1.98	1.72	—	1.9	0.007	0.97	3.0	0.05	15.24	0.02	1.588	7.39	6.32	3.9	96.0	0.1	-1.76	0.69	0.83	5.00	1.8	0.005	0.76	0.0	0.04	15.22	0.01	1.797	7.93	2.97	3.7	96.2	0.0	0.22	0.86	0.70	0.86	4.93	149338	5585	117	4555	331	7248	0	logfile
✔	7M4Y	23670	2022-04-09	2021-03-22	2.5	1.72	—	1.5	0.008	0.60	2.0	0.05	16.30	0.02	1.783	3.46	2.14	2.5	97.3	0.2	1.41	0.77	0.73	3.74	1.5	0.005	0.79	0.0	0.04	16.55	0.01	1.670	4.70	3.79	3.1	96.7	0.1	0.33	0.30	0.79	0.77	3.89	139817	5511	80	4453	200	1044	0	logfile
✔	7N8o	24239	2022-04-04	2021-06-15	1.93	1.73	—	1.9	0.024	2.42	0.0	0.13	20.30	0.01	1.522	14.72	1.91	3.0	96.9	0.1	0.75	0.73	0.75	5.48	1.8	0.005	0.83	0.0	0.05	18.83	0.01	2.013	12.22	1.75	2.8	97.2	0.0	1.06	0.34	0.75	0.78	5.36	54656	5544	113	0	228	1236	0	logfile
✘	7A5V	11657	2022-04-06	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	13.54	0.02	0.000	2.35	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21155	2275	30	0	85	1015	0	logfile
✔	7M4W	23668	2022-04-08	2021-03-22	2.55	1.74	—	1.6	0.008	0.57	0.0	0.05	15.01	0.01	1.760	3.08	0.02	2.8	97.0	0.2	1.38	0.77	0.74	3.81	1.5	0.008	0.91	0.0	0.05	16.24	0.01	1.619	4.94	2.38	3.6	96.3	0.1	0.19	0.91	0.80	0.78	3.76	137923	5518	76	4373	195	797	0	logfile
✔	7QKW	14055	2022-04-04	2021-12-19	2.32	1.74	2.60	2.3	0.010	1.93	1.0	0.10	13.53	0.01	2.534	0.00	0.00	5.4	94.6	0.0	-2.79	0.41	0.81	7.02	2.3	0.002	0.52	0.0	0.05	16.59	0.00	2.445	2.55	1.09	4.8	95.2	0.0	-2.85	1.38	0.41	0.84	5.96	4707	306	6	0	0	0	2439	logfile
✔	7M4X	23669	2022-04-09	2021-03-22	2.66	1.75	—	1.6	0.008	0.57	0.0	0.05	15.13	0.01	1.789	3.62	0.00	2.5	97.4	0.1	1.32	0.77	0.73	3.46	1.6	0.004	0.71	0.0	0.04	16.13	0.01	1.695	5.22	2.25	3.0	96.9	0.1	0.31	0.34	0.80	0.76	3.36	139446	5528	73	4453	194	552	0	logfile
✔	7VD9	31911	2022-04-05	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	7.80	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.004	0.65	0.0	0.05	17.58	0.01	2.186	8.24	2.68	4.5	95.5	0.0	-0.21	0.29	0.59	0.73	3.61	16426	1991	8	0	8	0	0	logfile
✘	7EFC	31083	2022-04-06	2021-03-21	1.7	1.76	1.83	1.9	0.032	3.16	80.0	0.09	15.03	0.02	0.000	3.39	2.15	2.5	96.6	0.8	-0.84	0.73	0.80	6.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✔	7BHQ	12190	2022-04-05	2021-01-11	3.2	1.77	3.76	2.6	0.003	0.50	0.0	0.04	14.12	0.00	2.168	13.46	0.00	3.0	97.0	0.0	1.03	0.20	0.46	0.97	2.1	0.020	1.62	1.0	0.05	16.56	0.00	1.850	17.23	0.24	3.6	96.4	0.0	0.60	0.82	0.21	0.52	1.38	7402	1010	5	0	0	0	0	logfile
✔	7RCV	24407	2022-04-04	2021-07-08	2.01	1.78	—	1.9	0.023	2.41	0.0	0.13	20.43	0.01	1.915	13.88	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	1.9	0.005	0.87	0.0	0.05	19.00	0.01	2.033	12.58	1.99	2.7	97.2	0.0	0.62	0.91	0.80	0.82	5.27	54656	5544	114	0	228	1236	0	logfile

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