Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7A4M	11638	2021-08-17	2020-08-20	1.22	1.13	1.28	1.2	0.010	1.37	0.0	0.09	13.82	0.01	0.001	2.43	1.18	1.8	98.2	0.0	2.86	0.40	0.57	8.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76248	4128	24	0	48	2640	36216	logfile
✔	7A6A	11668	2021-08-11	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.70	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.002	0.54	0.0	0.04	15.40	0.00	2.271	2.99	1.82	1.8	98.2	0.0	4.91	0.44	0.68	0.80	8.90	41613	4152	72	0	32	4621	0	logfile
✔	7A6B	11669	2021-08-11	2020-08-25	1.33	1.21	—	1.3	0.015	1.60	24.0	0.12	15.33	0.01	1.893	4.57	4.17	1.2	98.8	0.0	2.52	0.52	0.65	9.13	1.3	0.003	0.71	0.0	0.04	14.93	0.00	2.118	3.76	1.79	1.8	98.2	0.0	4.27	0.42	0.75	0.85	9.05	41494	4152	72	0	32	3854	0	logfile
✔	7K3V	22657	2021-08-11	2020-09-14	1.34	1.44	—	1.4	0.005	0.80	0.0	0.04	14.68	0.00	0.211	2.71	0.00	1.2	98.8	0.0	3.60	0.69	0.78	8.90	1.4	0.005	0.76	0.0	0.04	14.91	0.00	1.997	2.36	0.00	1.2	98.8	0.0	3.89	0.33	0.72	0.82	8.91	38406	4128	72	0	334	2672	0	logfile
✔	7K3W	22658	2021-08-11	2020-09-14	1.36	1.48	—	1.5	0.004	0.77	0.0	0.04	14.50	0.00	1.934	2.97	0.00	1.8	98.2	0.0	3.35	0.73	0.80	9.05	1.5	0.003	0.65	0.0	0.04	14.89	0.00	2.040	2.19	0.00	1.8	98.2	0.0	4.41	0.13	0.74	0.80	9.20	39086	4128	72	0	382	2680	0	logfile
✔	6Z9F	11122	2021-08-11	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.75	48.0	0.10	15.49	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.002	0.60	0.0	0.04	15.15	0.00	2.178	5.28	3.05	1.6	98.4	0.0	5.05	0.98	0.83	0.84	8.67	41020	4152	72	0	32	4172	0	logfile
✔	7M4Y	23670	2021-08-12	2021-03-22	2.5	1.72	—	1.5	0.008	0.60	2.0	0.05	16.30	0.02	1.783	3.39	2.14	2.5	97.3	0.2	1.41	0.77	0.73	3.74	1.5	0.005	0.78	0.0	0.04	16.38	0.01	1.725	4.84	3.35	3.1	96.7	0.1	0.35	0.91	0.80	0.78	3.81	139817	5511	80	4453	200	1044	0	logfile
✔	7K00	22586	2021-08-16	2020-09-02	1.98	1.72	—	1.9	0.007	0.97	3.0	0.05	15.24	0.02	1.588	7.33	6.32	3.9	96.0	0.1	-1.76	0.69	0.83	5.00	1.8	0.006	0.83	0.0	0.04	15.25	0.01	1.828	7.98	2.62	3.9	96.1	0.0	0.05	0.87	0.71	0.86	4.95	149338	5585	117	4555	331	7248	0	logfile
✔	7A5V	11657	2021-08-09	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.65	0.0	0.09	13.53	0.02	0.000	2.30	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	1.8	0.003	0.69	0.0	0.05	14.03	0.00	0.000	5.43	0.29	0.7	99.3	0.0	1.84	0.44	0.72	0.85	6.36	21155	2275	30	0	85	1015	0	logfile
✔	7M4W	23668	2021-08-11	2021-03-22	2.55	1.74	—	1.6	0.008	0.57	0.0	0.05	15.01	0.01	1.760	3.05	0.02	2.8	97.0	0.2	1.38	0.77	0.74	3.81	1.5	0.007	0.85	0.0	0.05	16.17	0.01	1.695	4.96	2.29	3.5	96.4	0.1	0.18	0.91	0.80	0.78	3.86	137923	5518	76	4373	195	797	0	logfile
✔	7M4X	23669	2021-08-12	2021-03-22	2.66	1.75	—	1.6	0.008	0.57	0.0	0.05	15.13	0.01	1.789	3.60	0.00	2.5	97.4	0.1	1.32	0.77	0.73	3.46	1.6	0.004	0.68	0.0	0.04	15.99	0.01	1.791	5.20	2.43	2.9	97.0	0.1	0.44	0.38	0.81	0.78	3.27	139446	5528	73	4453	194	552	0	logfile
✘	7EFC	31083	2021-08-09	2021-03-21	1.7	1.76	1.83	1.9	0.033	3.25	80.0	0.10	14.95	0.00	0.000	2.92	2.15	2.5	96.6	0.8	-0.84	0.73	0.80	6.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✔	7BHQ	12190	2021-08-08	2021-01-11	3.2	1.77	3.76	2.6	0.003	0.50	0.0	0.04	14.12	0.00	2.168	13.33	0.00	3.0	97.0	0.0	1.03	0.20	0.47	0.97	3.0	0.017	1.53	1.0	0.04	17.16	0.01	1.631	24.30	0.12	4.1	95.9	0.0	0.27	0.90	0.20	0.45	1.17	7402	1010	5	0	0	0	0	logfile
✔	7o6E	12738	2021-08-10	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.004	0.49	0.0	0.03	18.22	0.01	2.202	3.30	0.69	1.0	99.0	0.0	4.35	0.28	0.88	0.89	5.30	35304	4248	48	0	0	1392	0	logfile
✘	7M4U	23666	2021-08-08	2021-03-22	2.71	1.78	—	1.6	0.003	0.54	2.0	0.04	14.67	0.00	1.182	4.36	0.20	3.1	96.7	0.2	1.08	0.79	0.76	3.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	51764	2386	27	1528	84	191	0	logfile
✘	7EFD	31084	2021-08-09	2021-03-21	1.77	1.79	1.83	1.9	0.034	3.25	60.0	0.10	15.30	0.00	0.000	2.62	2.15	1.7	97.5	0.8	-0.54	0.71	0.78	5.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✔	7M4Z	23671	2021-08-11	2021-03-22	2.92	1.87	—	1.6	0.007	0.56	0.0	0.04	15.16	0.02	1.833	4.56	0.00	3.0	96.9	0.2	1.09	0.77	0.72	2.81	2.5	0.004	0.79	0.0	0.04	16.53	0.01	1.531	8.30	1.81	4.0	95.9	0.2	-0.10	0.93	0.79	0.75	2.87	138172	5625	70	4373	190	229	0	logfile
✔	6ZGL	11210	2021-08-08	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	8.33	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.55	0.0	0.04	15.71	0.00	2.114	4.82	1.06	0.7	99.3	0.0	3.63	0.75	0.75	0.82	7.01	15760	1848	24	0	0	964	0	logfile
✘	7D1T	30547	2021-08-08	2020-09-15	1.95	1.88	1.89	1.9	0.019	1.80	31.0	0.10	18.25	0.02	1.200	3.31	2.40	1.9	97.9	0.2	-0.93	0.77	0.85	6.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✔	6S61	10101	2021-08-10	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.30	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.004	0.63	0.0	0.04	14.73	0.00	1.766	5.08	0.65	1.2	98.8	0.0	4.22	0.74	0.78	0.88	8.81	71060	4128	72	0	30	3854	32904	logfile

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