Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7F4V	31455	2022-12-19	2021-06-21	2.04	1.80	—	2.0	0.025	2.42	0.0	0.08	19.55	0.03	1.203	4.76	2.78	3.0	96.9	0.1	-2.15	0.70	0.83	6.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67641	6336	78	0	453	402	0	logfile
✔	7PQU	13605	2022-12-12	2021-09-20	3.03	1.80	—	3.4	0.008	0.88	0.0	0.05	16.72	0.01	0.051	14.92	5.14	7.9	92.0	0.1	-3.95	0.77	0.80	2.84	3.5	0.004	0.64	0.0	0.04	16.51	0.01	2.240	10.70	0.18	6.2	93.8	0.0	-0.68	0.98	0.76	0.79	2.49	10798	1312	12	0	8	14	0	logfile
✔	7PF1	13364	2022-12-21	2021-08-11	2.1	1.83	—	2.0	0.020	1.66	0.0	0.12	14.32	0.01	1.766	1.61	0.65	1.7	98.3	0.0	1.14	0.71	0.75	6.05	1.8	0.003	0.56	0.0	0.04	17.16	0.00	1.943	11.41	0.05	1.7	98.3	0.0	5.04	1.38	0.78	0.82	7.01	41646	4176	72	0	263	7207	0	logfile
✔	7V66	31736	2022-12-18	2021-08-19	1.89	1.85	—	5.2	0.006	1.02	0.0	0.07	12.14	0.01	1.929	1.95	2.07	1.9	98.0	0.0	1.97	0.09	0.05	1.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33216	4128	24	0	0	0	0	logfile
✘	7SA3	24943	2022-12-18	2021-09-22	2.25	1.86	—	2.2	0.022	2.27	0.0	0.08	19.95	0.01	1.206	11.63	4.04	3.7	96.0	0.2	-1.16	0.78	0.84	4.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15960	1644	19	0	79	230	0	logfile
✔	8CTE	26988	2022-12-20	2022-05-14	2.9	1.86	2.80	1.5	0.002	0.52	1.0	0.04	11.29	0.00	2.214	5.69	2.34	1.6	98.3	0.1	2.02	0.78	0.75	3.53	1.4	0.004	0.59	0.0	0.04	15.03	0.00	2.062	7.27	1.33	2.1	97.8	0.1	1.65	0.57	0.80	0.78	3.97	38844	4984	21	0	16	0	0	logfile
✔	8A57	15161	2022-12-16	2022-06-14	2.3	1.87	2.34	2.1	0.011	1.72	2.0	0.12	15.42	0.02	1.972	3.37	2.49	7.1	91.7	1.2	-3.32	0.61	0.75	3.99	2.0	0.005	0.81	0.0	0.04	16.08	0.01	1.803	9.66	3.44	5.0	94.9	0.1	-1.05	1.28	0.68	0.77	3.91	92760	3527	39	3022	167	0	0	logfile
✔	6ZGL	11210	2022-12-13	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.41	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.56	0.0	0.04	15.75	0.00	2.118	4.99	1.00	0.6	99.4	0.0	3.59	0.75	0.75	0.83	7.07	15760	1848	24	0	0	964	0	logfile
✘	7D1T	30547	2022-12-19	2020-09-15	1.95	1.88	1.89	1.9	0.020	1.91	31.0	0.10	18.53	0.02	1.200	3.45	2.40	1.9	97.9	0.2	-0.93	0.77	0.85	6.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✔	6S61	10101	2022-12-14	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.62	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.003	0.57	0.0	0.03	14.82	0.00	1.798	5.19	0.65	1.8	98.2	0.0	4.54	0.74	0.80	0.90	8.65	71060	4128	72	0	30	3854	32904	logfile
✘	7UTA	26764	2022-12-18	2022-04-26	2.4	1.90	2.36	1.6	0.030	0.77	0.0	0.05	18.18	0.00	1.975	12.61	2.71	4.1	95.7	0.3	-0.49	0.78	0.79	3.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24323	3068	20	0	22	55	0	logfile
✔	7P6A	13223	2022-12-11	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.09	0.00	2.291	4.28	0.00	4.7	95.3	0.0	-2.61	0.82	0.55	0.89	7.80	4166	540	10	0	0	76	0	logfile
✔	8A5i	15175	2022-12-16	2022-06-15	2.3	1.92	2.20	2.2	0.011	1.72	1.0	0.12	15.57	0.02	1.234	3.44	2.48	5.4	93.2	1.4	-2.45	0.49	0.73	5.52	2.1	0.005	0.78	0.0	0.04	15.64	0.01	1.599	7.73	2.08	4.3	95.4	0.2	-0.31	0.88	0.68	0.85	5.25	89799	2973	56	3022	172	1381	0	logfile
✘	7UT9	26763	2022-12-18	2022-04-26	2.44	1.92	2.20	1.7	0.020	0.68	0.0	0.05	18.68	0.00	1.975	10.01	3.62	3.3	96.5	0.2	0.25	0.80	0.80	3.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20243	2538	18	0	13	60	0	logfile
✘	7D1U	30548	2022-12-22	2020-09-15	2.08	1.94	2.04	2.0	0.018	1.83	27.0	0.10	18.50	0.02	1.202	4.10	3.09	2.3	97.5	0.2	-1.36	0.74	0.87	6.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52655	5312	106	0	196	2121	0	logfile
✘	7UT7	26757	2022-12-18	2022-04-26	1.91	1.94	1.87	2.0	0.042	0.66	0.0	0.05	16.33	0.01	1.975	5.18	0.87	2.4	97.6	0.0	0.26	0.72	0.85	7.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16442	1998	12	0	8	415	0	logfile
✘	7UT8	26760	2022-12-18	2022-04-26	2.43	1.94	2.10	1.7	0.020	0.64	0.0	0.05	18.54	0.00	1.974	9.48	3.66	3.2	96.7	0.1	0.19	0.82	0.82	3.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20221	2538	18	0	13	29	0	logfile
✔	7MiJ	23853	2022-12-14	2021-04-17	1.98	1.95	—	2.0	0.010	1.38	4.0	0.05	19.92	0.01	2.320	3.08	0.18	2.8	97.2	0.0	-3.96	0.75	0.81	5.48	2.0	0.004	0.69	0.0	0.04	18.91	0.00	2.094	5.63	1.27	3.8	96.2	0.0	0.72	0.64	0.77	0.82	5.32	23010	2556	12	0	38	328	0	logfile
✔	8CS9	26960	2022-12-12	2022-05-12	2.74	1.95	—	1.6	0.006	0.84	0.0	0.05	17.88	0.01	2.218	10.43	3.66	2.2	97.5	0.3	0.33	0.82	0.81	3.50	1.6	0.003	0.55	0.0	0.04	17.79	0.00	2.136	8.28	2.78	1.9	98.1	0.0	1.60	0.38	0.83	0.83	3.44	60944	7677	39	0	27	268	0	logfile
✘	8DPN	27639	2022-12-18	2022-07-15	2.49	1.95	2.55	1.7	0.023	0.60	0.0	0.04	17.47	0.00	1.898	7.23	0.99	2.5	97.5	0.0	0.56	0.83	0.84	4.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16067	1998	12	0	8	40	0	logfile

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