Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7D1U	30548	2021-06-05	2020-09-15	2.08	1.94	2.04	2.0	0.017	1.69	27.0	0.09	18.17	0.02	1.202	3.96	3.09	2.3	97.5	0.2	-1.36	0.74	0.87	6.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52655	5312	106	0	196	2121	0	logfile
✔	6X1A	21994	2021-06-02	2020-05-18	2.5	1.99	2.50	2.6	0.006	1.14	0.0	0.15	16.10	0.00	2.140	14.01	3.79	3.9	96.1	0.0	-3.15	0.51	0.71	2.96	2.6	0.003	0.64	0.0	0.04	17.10	0.00	2.237	9.11	4.16	3.3	96.7	0.0	-0.32	1.03	0.54	0.73	2.74	10140	1262	5	0	1	23	0	logfile
✔	5FTK	3296	2021-06-04	2016-01-14	2.4	2.04	—	2.0	0.011	1.39	0.0	0.07	12.31	0.01	2.216	24.37	0.65	6.1	93.5	0.4	-4.37	0.44	0.66	3.22	2.0	0.004	0.86	0.0	0.05	17.54	0.01	2.102	16.32	3.33	8.2	91.7	0.1	-1.73	1.27	0.49	0.69	1.70	34374	4338	18	0	12	96	0	logfile
✔	5FTJ	3295	2021-06-04	2016-01-14	2.3	2.04	—	2.0	0.010	1.31	0.0	0.18	14.93	0.01	1.862	40.24	0.81	5.7	93.3	1.0	-3.32	0.42	0.64	2.67	2.0	0.003	0.80	0.0	0.05	18.08	0.01	2.140	13.85	2.49	6.1	93.8	0.1	-0.56	1.25	0.48	0.68	1.53	34602	4338	18	0	18	120	0	logfile
✔	6YL3	10835	2021-06-05	2020-04-06	1.98	2.04	1.99	2.0	0.067	3.60	246.0	0.36	16.35	0.02	1.877	4.38	2.74	5.3	94.4	0.4	-2.46	0.78	0.83	6.40	2.0	0.005	0.81	0.0	0.05	16.26	0.01	1.730	5.48	1.50	4.1	95.7	0.2	-0.18	0.53	0.82	0.86	7.05	150156	9552	84	0	24	3672	73044	logfile
✔	5A1A	2984	2021-06-04	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.11	0.01	0.020	13.89	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	2.5	0.004	0.71	0.0	0.04	17.47	0.00	1.971	11.85	3.32	3.4	96.5	0.1	-0.69	0.89	0.52	0.79	3.97	33696	4088	12	0	20	776	0	logfile
✔	7JSX	22462	2021-06-04	2020-08-16	2.06	2.05	—	2.1	0.022	1.67	2.0	0.11	11.97	0.01	2.201	6.73	1.26	3.9	96.1	0.0	-1.03	0.74	0.76	5.10	2.0	0.004	0.69	0.0	0.05	14.48	0.00	2.145	8.01	0.69	2.5	97.5	0.0	0.89	0.64	0.82	0.89	6.21	38813	4832	40	0	0	1141	0	logfile
✘	6XZ7	10655	2021-06-03	2020-02-03	2.1	2.05	2.12	2.1	0.007	0.77	1.0	0.05	14.33	0.01	1.128	6.27	3.26	2.8	96.8	0.4	-2.20	0.41	0.69	5.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94915	3351	45	3169	179	528	0	logfile
✔	6WZG	21972	2021-06-01	2020-05-13	2.3	2.06	2.22	2.3	0.012	1.56	18.0	0.12	13.99	0.01	2.270	4.80	1.65	2.0	98.0	0.0	0.81	0.66	0.71	4.83	2.3	0.004	0.65	0.0	0.04	16.32	0.00	2.095	5.43	1.98	2.3	97.7	0.0	1.43	0.99	0.73	0.86	4.94	8939	1165	6	0	0	0	0	logfile
✔	6YBQ	10771	2021-06-04	2020-03-17	1.96	2.06	—	2.0	0.039	1.60	0.0	0.05	15.08	0.01	1.550	4.52	0.00	2.7	97.3	0.0	-1.94	0.82	0.87	6.46	2.0	0.003	0.67	0.0	0.05	15.94	0.00	2.181	4.78	0.41	2.6	97.4	0.0	0.29	0.96	0.84	0.89	5.90	34092	4289	36	0	12	871	0	logfile
✔	6WWo	21942	2021-06-02	2020-05-09	2.8	2.07	2.79	1.9	0.038	1.74	3.0	0.13	15.95	0.02	1.958	5.92	1.99	6.1	93.5	0.3	-4.55	0.58	0.74	4.64	1.9	0.007	1.04	0.0	0.05	16.99	0.01	0.229	17.36	1.14	5.5	94.4	0.2	-3.90	1.72	0.58	0.77	4.53	9784	1230	6	1	5	0	0	logfile
✘	6X8M	22094	2021-06-01	2020-06-01	2.2	2.07	2.27	2.2	0.005	0.63	0.0	0.05	13.91	0.01	2.264	5.26	0.82	3.3	96.7	0.0	-1.41	0.74	0.86	6.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	133440	16800	60	0	0	0	0	logfile
✔	6WWR	21945	2021-06-02	2020-05-09	2.7	2.08	2.69	1.9	0.038	1.52	1.0	0.12	14.67	0.01	1.967	5.29	0.57	5.8	94.2	0.0	-3.62	0.60	0.77	5.00	1.9	0.007	0.98	0.0	0.05	16.63	0.01	1.786	15.34	0.67	5.1	94.9	0.0	-2.99	0.95	0.61	0.80	4.82	9719	1220	6	1	4	0	0	logfile
✔	6WWU	21948	2021-06-02	2020-05-09	2.7	2.08	2.76	1.9	0.039	1.73	1.0	0.13	16.23	0.02	2.072	6.82	2.78	5.8	94.0	0.2	-3.98	0.60	0.76	4.02	1.9	0.006	0.99	0.0	0.05	17.15	0.01	1.395	13.23	1.44	5.0	95.0	0.0	-3.27	0.47	0.59	0.79	4.04	9688	1216	6	1	4	0	0	logfile
✔	6WX6	21951	2021-06-01	2020-05-09	2.0	2.10	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.004	0.54	0.0	0.04	16.22	0.00	2.001	2.31	0.69	1.2	98.8	0.0	4.73	0.53	0.78	0.89	7.36	68332	4128	56	0	8	2420	32664	logfile
✘	6ZJA	11233	2021-06-02	2020-06-28	2.0	2.10	2.09	2.1	0.005	0.86	0.0	0.06	14.30	0.01	1.974	0.60	1.37	4.1	95.9	0.0	-0.40	0.79	0.87	6.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77951	9684	60	0	36	3191	0	logfile
✔	6UUS	20901	2021-06-01	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.39	3.27	2.8	97.2	0.0	-2.25	0.57	0.72	3.22	2.2	0.003	0.57	0.0	0.04	17.58	0.00	2.173	8.97	1.43	2.9	97.1	0.0	0.67	1.03	0.64	0.77	3.21	9308	1190	7	0	0	0	0	logfile
✔	6SAG	10130	2021-06-05	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.003	0.62	0.0	0.04	15.22	0.01	2.044	2.91	1.22	3.2	96.8	0.0	1.50	0.73	0.59	0.88	6.92	54080	6120	240	120	240	2840	0	logfile
✔	6WWS	21946	2021-06-02	2020-05-09	2.7	2.11	2.68	2.0	0.039	1.72	8.0	0.13	16.00	0.02	2.077	8.07	3.06	6.5	93.1	0.3	-3.99	0.59	0.78	4.41	2.0	0.007	0.99	0.0	0.05	17.05	0.01	1.758	14.74	1.53	5.5	94.5	0.1	-3.06	0.45	0.59	0.81	4.56	9696	1216	6	1	4	0	0	logfile
✔	7JFo	22308	2021-06-04	2020-07-17	2.13	2.12	—	2.1	0.022	1.67	2.0	0.11	12.07	0.01	2.198	6.67	1.23	3.9	96.1	0.0	-0.96	0.72	0.77	6.96	2.1	0.002	0.58	0.0	0.04	14.43	0.00	2.193	6.77	1.00	2.0	98.0	0.0	1.44	0.79	0.70	0.75	5.59	38958	4832	40	0	0	1198	0	logfile

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