Table showing results for April 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WX6	21951	2021-04-01	2020-05-09	2.0	2.10	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.004	0.54	0.0	0.04	16.22	0.00	2.001	2.31	0.69	1.2	98.8	0.0	4.73	0.53	0.78	0.89	7.36	68332	4128	56	0	8	2420	32664	logfile
✔	6UUS	20901	2021-04-01	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.39	3.27	2.8	97.2	0.0	-2.25	0.57	0.72	3.22	2.2	0.003	0.57	0.0	0.04	17.58	0.00	2.173	8.97	1.43	2.9	97.1	0.0	0.67	1.03	0.64	0.77	3.21	9308	1190	7	0	0	0	0	logfile
✔	6ZJA	11233	2021-04-02	2020-06-28	2.0	2.10	2.09	2.1	0.005	0.86	0.0	0.06	14.30	0.01	1.974	0.60	1.37	4.1	95.9	0.0	-0.40	0.79	0.87	6.97	2.1	0.004	0.75	0.0	0.05	16.03	0.01	1.665	1.38	0.54	4.2	95.8	0.0	-0.07	0.39	0.78	0.89	6.84	77951	9684	60	0	36	3191	0	logfile
✔	6SAG	10130	2021-04-05	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.003	0.62	0.0	0.04	15.22	0.01	2.044	2.91	1.22	3.2	96.8	0.0	1.50	0.73	0.59	0.88	6.92	54080	6120	240	120	240	2840	0	logfile
✔	6UVA	20906	2021-04-01	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.07	0.00	2.207	6.60	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.62	0.0	0.04	18.36	0.00	2.165	8.55	3.17	4.4	95.6	0.0	0.32	1.32	0.66	0.78	3.02	9561	1199	7	0	0	0	0	logfile
✔	7JFo	22308	2021-04-04	2020-07-17	2.13	2.12	—	2.1	0.022	1.67	2.0	0.11	12.07	0.01	2.198	6.67	1.23	3.9	96.1	0.0	-0.96	0.72	0.77	6.96	2.1	0.002	0.58	0.0	0.04	14.43	0.00	2.193	6.77	1.00	2.0	98.0	0.0	1.44	0.79	0.70	0.75	5.59	38958	4832	40	0	0	1198	0	logfile
✔	6RW4	10021	2021-04-05	2019-06-03	2.97	2.14	2.95	2.8	0.022	0.77	0.0	0.08	13.22	0.01	1.420	2.40	0.06	3.0	97.0	0.1	-2.57	0.85	0.84	4.78	2.8	0.005	0.68	0.0	0.04	12.86	0.00	1.695	3.33	0.00	2.0	98.0	0.0	1.06	1.98	0.88	0.88	4.60	128080	5920	47	955	85	59	59211	logfile
✔	7JJP	22358	2021-04-04	2020-07-27	1.94	2.15	2.08	2.1	0.011	1.21	0.0	0.07	14.56	0.01	2.228	2.51	0.56	1.6	98.4	0.0	0.39	0.71	0.85	5.30	2.1	0.002	0.54	0.0	0.04	14.98	0.00	2.108	7.63	0.61	0.9	99.1	0.0	3.79	0.93	0.72	0.87	4.90	40920	2352	36	0	180	396	19104	logfile
✘	6ZKL	11253	2021-04-01	2020-06-30	3.1	2.15	—	2.2	0.007	1.05	0.0	1.04	10.90	0.01	1.216	5.61	0.07	3.9	96.1	0.0	-2.99	0.56	0.74	3.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67492	8162	71	0	47	0	0	logfile
✔	3JAD	6344	2021-04-02	2015-06-08	3.9	2.16	—	3.8	0.016	1.36	0.0	0.07	9.04	0.01	2.250	16.45	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	2.6	0.004	0.81	0.0	0.05	12.15	0.00	2.133	18.84	0.00	5.1	94.9	0.0	0.53	1.28	0.70	0.78	0.51	12705	1685	10	0	15	0	0	logfile
✔	6X3T	22032	2021-04-02	2020-05-21	2.55	2.18	2.60	2.5	0.004	0.60	0.0	0.04	13.06	0.00	2.171	5.88	2.28	3.0	97.0	0.0	-0.78	0.73	0.82	4.33	2.5	0.003	0.57	0.0	0.04	12.89	0.00	2.139	6.72	0.00	2.4	97.6	0.0	1.15	1.52	0.75	0.83	4.50	17415	2121	18	0	27	0	0	logfile
✔	6LXV	30007	2021-04-05	2020-02-12	2.1	2.18	—	2.2	0.025	1.66	0.0	0.12	16.07	0.01	2.196	1.97	2.81	3.9	95.9	0.1	-1.79	0.78	0.91	6.69	2.2	0.002	0.55	0.0	0.04	16.52	0.00	2.211	4.23	0.90	2.4	97.6	0.0	1.09	0.93	0.78	0.90	6.10	54924	6448	24	0	16	2967	0	logfile
✔	6X19	21993	2021-04-01	2020-05-18	2.1	2.20	2.11	2.1	0.009	1.48	6.0	0.08	14.12	0.01	2.134	12.47	1.01	2.7	97.3	0.1	-1.61	0.73	0.84	4.93	2.2	0.003	0.80	0.0	0.04	16.71	0.00	2.132	6.38	1.10	2.0	98.0	0.0	1.16	1.56	0.72	0.87	4.45	10277	1258	9	0	1	136	0	logfile
✔	7AQC	11862	2021-04-03	2020-10-21	2.99	2.20	—	2.5	0.004	0.83	0.0	0.05	16.62	0.01	1.862	5.08	0.13	5.4	94.6	0.0	-1.91	0.83	0.80	2.39	2.5	0.007	0.79	0.0	0.05	16.46	0.01	2.025	9.02	0.03	6.8	93.1	0.1	-0.93	0.55	0.88	0.87	3.32	95378	3752	34	3077	0	0	0	logfile
✔	7JZ6	22530	2021-04-02	2020-09-01	2.53	2.20	—	2.2	0.009	1.04	8.0	0.11	19.13	0.01	1.219	7.68	11.17	7.8	92.2	0.0	-3.03	0.58	0.65	2.78	2.2	0.003	0.67	0.0	0.04	14.17	0.01	2.164	5.95	0.00	3.2	96.8	0.0	0.19	1.61	0.57	0.63	3.18	20842	2646	12	0	4	18	0	logfile
✔	7JVR	22511	2021-04-01	2020-08-22	2.8	2.21	—	2.0	0.023	0.96	0.0	0.10	8.76	0.01	2.235	4.64	0.00	2.8	97.2	0.0	-0.85	0.74	0.74	2.70	2.1	0.004	0.85	0.0	0.04	10.65	0.00	2.127	15.00	0.00	2.3	97.7	0.0	0.37	1.22	0.76	0.77	2.92	8872	1126	6	0	1	0	0	logfile
✔	6W6P	21562	2021-04-01	2020-03-17	2.9	2.21	—	1.7	0.010	1.07	0.0	0.06	16.55	0.01	1.989	6.41	16.52	12.1	87.6	0.3	-4.00	0.77	0.84	2.96	1.7	0.008	0.97	0.0	0.05	15.21	0.01	1.963	5.98	0.02	10.5	89.4	0.1	-2.12	1.61	0.79	0.86	3.64	133554	5058	51	4378	4	0	0	logfile
✔	3J89	6123	2021-04-01	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	0.00	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.004	0.57	0.0	0.03	17.74	0.00	2.034	9.09	0.00	1.8	98.2	0.0	2.66	2.02	0.81	0.79	0.68	9025	551	19	0	0	0	4598	logfile
✔	6XS6	22301	2021-04-02	2020-07-15	3.7	2.21	—	2.2	0.004	0.83	0.0	0.05	14.26	0.01	2.240	4.49	0.00	6.1	93.9	0.0	-1.99	0.57	0.59	2.30	2.2	0.005	0.70	0.0	0.05	14.34	0.01	2.150	9.86	0.00	7.7	92.3	0.0	-1.38	0.32	0.58	0.59	2.42	18294	2357	3	0	0	0	0	logfile
✔	6XiT	22200	2021-04-02	2020-06-21	3.3	2.22	—	3.5	0.009	0.97	0.0	0.06	14.21	0.01	1.894	10.11	0.74	4.0	96.0	0.0	-3.79	0.65	0.73	3.11	3.5	0.003	0.60	0.0	0.04	13.65	0.00	2.168	12.36	0.09	1.8	98.2	0.0	-0.01	1.17	0.70	0.81	2.49	10403	1308	8	0	7	0	0	logfile

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