Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6ZZY	11589	2021-12-01	2020-08-05	3.16	2.16	—	2.5	0.025	2.79	0.0	0.18	22.41	0.02	1.183	12.85	0.03	6.1	93.7	0.2	-0.33	0.57	0.76	3.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	54609	4594	44	0	379	0	0	logfile
✔	7LVR	23541	2021-12-01	2021-02-26	2.9	2.16	2.87	2.1	0.013	1.04	0.0	0.06	14.41	0.01	1.937	3.73	0.19	5.2	94.8	0.0	-3.15	0.57	0.78	4.33	2.1	0.004	0.67	0.0	0.04	17.14	0.01	1.915	7.31	2.18	2.8	97.2	0.0	-0.43	1.31	0.59	0.84	3.63	9802	1231	6	1	6	0	0	logfile
✔	7N0L	24108	2021-12-01	2021-05-25	2.8	2.17	—	3.1	0.065	1.95	0.0	0.04	21.58	0.00	1.675	13.40	9.23	2.0	98.0	0.0	-6.10	0.56	0.80	3.16	3.1	0.003	0.70	0.0	0.04	21.23	0.00	2.185	11.86	4.06	0.3	99.7	0.0	2.11	1.26	0.57	0.81	2.04	5270	626	4	0	2	0	0	logfile
✔	6LXV	30007	2021-12-01	2020-02-12	2.1	2.18	—	2.2	0.025	1.66	0.0	0.12	16.07	0.01	2.196	2.01	2.81	3.9	95.9	0.1	-1.79	0.78	0.91	6.69	2.2	0.002	0.58	0.0	0.04	16.42	0.00	2.155	4.23	0.68	2.5	97.5	0.0	1.11	0.93	0.79	0.91	6.02	54924	6448	24	0	16	2967	0	logfile
✔	7F2o	31429	2021-12-01	2021-06-11	2.9	2.20	—	2.1	0.003	0.57	0.0	0.04	12.79	0.01	2.194	5.48	0.41	3.2	96.8	0.0	-0.75	0.70	0.68	3.19	2.0	0.004	0.71	0.0	0.04	15.79	0.00	2.009	14.78	1.83	2.2	97.8	0.0	0.80	0.67	0.76	0.77	2.56	9004	1150	6	0	0	0	0	logfile
✔	7EZM	31389	2021-12-01	2021-06-01	2.9	2.20	—	2.0	0.011	1.07	1.0	0.15	13.21	0.01	2.228	4.72	0.94	3.8	96.2	0.0	-0.87	0.76	0.76	3.60	2.0	0.004	0.78	0.0	0.07	16.17	0.00	2.095	11.18	2.51	2.1	97.9	0.0	0.54	0.63	0.79	0.80	2.94	9008	1171	6	0	0	0	0	logfile
✘	7S8N	24898	2021-12-01	2021-09-18	2.9	2.20	2.92	2.1	0.013	0.95	0.0	0.06	13.12	0.01	2.202	4.10	0.00	5.1	94.9	0.0	-0.33	0.79	0.80	3.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8154	1090	6	0	1	0	0	logfile
✔	7JVR	22511	2021-12-01	2020-08-22	2.8	2.21	—	2.0	0.016	0.95	0.0	0.07	8.77	0.01	2.235	4.64	0.00	2.8	97.2	0.0	-0.85	0.74	0.74	2.70	2.1	0.004	0.77	0.0	0.04	14.52	0.00	2.222	15.28	2.06	2.5	97.5	0.0	0.43	0.67	0.76	0.77	2.53	8872	1126	6	0	1	0	0	logfile
✔	3J89	6123	2021-12-01	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	2.11	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.004	0.56	0.0	0.03	20.77	0.01	2.082	10.42	2.01	1.4	98.6	0.0	2.48	1.98	0.81	0.80	0.26	9025	551	19	0	0	0	4598	logfile
✔	6WWN	21941	2021-12-01	2020-05-09	3.5	2.22	3.47	2.2	0.008	0.95	0.0	0.05	14.93	0.01	1.991	6.13	0.66	6.7	93.1	0.2	-3.70	0.54	0.74	3.19	2.2	0.004	0.66	0.0	0.04	16.93	0.00	1.930	7.48	0.47	3.8	96.2	0.0	-0.64	1.04	0.56	0.79	3.14	9784	1230	6	1	6	0	0	logfile
✔	7LJC	23390	2021-12-01	2021-01-28	3.0	2.23	—	2.1	0.005	1.06	0.0	0.07	8.61	0.01	2.282	5.07	0.11	2.8	97.2	0.0	-1.06	0.78	0.81	3.11	2.0	0.003	0.65	0.0	0.04	14.85	0.01	2.118	11.14	1.56	2.5	97.5	0.0	0.56	1.23	0.77	0.79	3.11	8544	1040	6	0	14	0	0	logfile
✔	7EiB	31145	2021-12-01	2021-03-30	3.0	2.24	—	2.0	0.005	0.86	0.0	0.05	12.65	0.01	2.306	3.38	0.27	2.0	98.0	0.0	-0.34	0.74	0.75	3.17	2.0	0.004	0.66	0.0	0.04	16.05	0.01	2.110	10.27	1.61	2.2	97.8	0.0	1.18	1.20	0.76	0.78	1.92	7204	928	5	0	0	0	0	logfile
✔	7EZK	31388	2021-12-01	2021-06-01	3.1	2.25	—	2.1	0.010	1.02	0.0	0.06	13.64	0.01	2.206	3.99	0.26	3.4	96.6	0.0	-1.02	0.72	0.73	3.21	2.1	0.004	0.66	0.0	0.04	15.92	0.00	2.150	9.87	0.65	1.9	98.1	0.0	0.80	1.61	0.75	0.78	2.92	7196	922	5	0	0	0	0	logfile
✔	6WWM	21940	2021-12-01	2020-05-09	2.8	2.26	2.84	2.1	0.012	1.04	0.0	0.06	14.80	0.02	1.967	5.47	0.77	6.9	93.1	0.0	-3.87	0.60	0.80	4.41	2.1	0.003	0.67	0.0	0.04	17.16	0.00	1.954	7.73	1.92	4.1	95.9	0.0	-0.45	1.09	0.61	0.85	3.41	9664	1212	6	1	4	0	0	logfile
✔	6WWQ	21944	2021-12-01	2020-05-09	3.0	2.27	3.08	2.1	0.009	0.98	0.0	0.05	14.92	0.01	1.980	5.25	0.19	5.9	94.1	0.0	-4.19	0.58	0.78	3.97	3.0	0.004	0.70	0.0	0.04	17.97	0.01	1.941	8.62	2.49	3.6	96.4	0.0	-0.67	0.73	0.60	0.84	3.55	9673	1215	6	1	4	0	0	logfile
✔	7EZH	31387	2021-12-01	2021-06-01	3.2	2.28	—	2.1	0.004	0.66	1.0	0.15	12.76	0.01	2.278	2.46	0.74	4.7	95.2	0.1	-1.38	0.73	0.72	2.97	2.1	0.003	0.77	0.0	0.07	15.76	0.00	2.182	12.46	0.42	2.4	97.6	0.0	0.84	1.61	0.75	0.76	2.16	8838	1150	6	0	0	0	0	logfile
✔	7V9M	31825	2021-12-01	2021-08-26	3.29	2.28	—	2.1	0.004	0.65	0.0	0.05	13.19	0.01	2.195	4.39	0.23	4.4	95.6	0.0	-0.30	0.72	0.72	3.08	2.1	0.003	0.63	0.0	0.04	15.68	0.00	2.152	10.70	0.23	3.3	96.7	0.0	0.68	1.18	0.73	0.75	1.71	8138	1029	6	0	0	0	0	logfile
✔	6WWT	21947	2021-12-01	2020-05-09	3.2	2.29	3.15	2.1	0.009	1.28	1.0	0.06	15.21	0.01	2.106	5.94	1.72	6.8	92.9	0.3	-4.07	0.54	0.73	3.01	2.1	0.003	0.67	0.0	0.04	17.58	0.00	1.964	8.68	0.38	4.2	95.8	0.0	-0.44	1.30	0.56	0.78	2.39	9657	1215	5	1	3	0	0	logfile
✔	6SK0	10219	2021-12-01	2019-08-14	2.3	2.29	2.11	2.2	0.008	0.74	0.0	0.05	15.85	0.00	2.202	9.23	0.97	3.3	96.7	0.0	-1.30	0.70	0.83	6.89	2.2	0.005	0.72	0.0	0.05	17.22	0.00	2.164	10.52	0.65	4.5	95.5	0.0	-1.28	1.50	0.80	0.90	6.82	5826	792	3	0	0	0	0	logfile
✔	5M5H	4155	2021-12-01	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.94	0.0	0.05	12.39	0.01	2.260	21.55	0.00	7.9	92.1	0.0	-1.85	2.19	0.15	0.13	—	1086	132	1	0	0	0	0	logfile

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