Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BC3	15961	2023-04-24	2022-10-14	2.1	2.00	2.14	2.2	0.014	2.07	0.0	0.11	17.99	0.02	2.310	1.34	11.95	3.3	96.7	0.0	-4.28	0.71	0.83	5.67	2.1	0.002	0.54	0.0	0.04	15.44	0.00	2.168	4.01	0.63	0.6	99.4	0.0	1.85	0.51	0.76	0.87	5.99	16880	2170	30	0	10	500	0	logfile
✔	7SSS	25413	2023-04-24	2021-11-11	2.4	2.00	2.36	2.4	0.006	0.66	0.0	0.04	14.29	0.02	2.323	3.55	0.00	2.4	97.6	0.0	0.01	0.59	0.78	4.08	2.3	0.003	0.61	0.0	0.04	17.86	0.00	2.126	10.16	2.41	3.9	96.1	0.0	2.31	0.59	0.60	0.78	3.63	12190	1416	24	0	38	170	0	logfile
✔	7RXG	24730	2023-04-22	2021-08-23	2.28	2.01	—	2.3	0.008	1.27	0.0	0.05	17.95	0.00	2.211	14.00	0.18	2.5	97.4	0.2	-0.83	0.61	0.82	4.82	2.3	0.005	0.64	0.0	0.04	17.08	0.01	2.010	16.49	0.89	3.3	96.7	0.0	1.26	0.91	0.66	0.87	5.46	11380	1300	6	0	26	48	96	logfile
✔	7XJG	33226	2023-04-22	2022-04-17	2.51	2.02	2.63	1.6	0.005	0.71	0.0	0.05	22.26	0.01	1.962	7.64	3.44	4.1	95.9	0.0	-0.23	0.76	0.76	2.80	1.6	0.004	0.57	0.0	0.04	21.98	0.00	2.113	7.40	4.28	3.9	96.1	0.0	0.70	0.25	0.79	0.79	2.46	13167	1066	12	216	2	0	0	logfile
✔	8GXU	34362	2023-04-29	2022-09-21	2.5	2.02	2.54	2.3	0.007	0.57	0.0	0.05	14.47	0.01	1.855	4.64	0.00	3.2	96.8	0.0	0.82	0.64	0.79	4.52	2.2	0.003	0.57	0.0	0.04	17.35	0.00	2.124	6.63	1.27	2.3	97.7	0.0	1.06	1.36	0.70	0.83	4.00	29503	3788	15	0	3	0	0	logfile
✔	7P0Z	13153	2023-04-22	2021-07-01	2.43	2.02	2.41	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.29	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.002	0.49	0.0	0.03	18.12	0.00	2.239	4.38	1.64	0.7	99.3	0.0	5.47	0.55	0.84	0.87	2.18	12873	1652	7	0	0	0	0	logfile
✔	7TJQ	25929	2023-04-29	2022-01-16	3.13	2.03	—	2.0	0.004	0.77	0.0	0.05	13.25	0.01	2.288	1.08	1.03	4.5	95.5	0.0	-0.55	0.75	0.75	3.94	2.0	0.007	0.72	0.0	0.05	15.36	0.00	2.157	9.61	0.40	3.3	96.7	0.0	-0.33	0.94	0.75	0.79	3.15	20538	2679	21	0	12	0	0	logfile
✔	7VDA	31912	2023-04-26	2021-09-06	2.26	2.04	2.42	2.1	0.003	0.53	0.0	0.04	17.67	0.00	2.142	7.99	2.20	2.6	97.4	0.0	1.67	0.66	0.82	4.06	2.0	0.002	0.54	0.0	0.04	18.07	0.00	2.051	8.99	2.60	2.1	97.9	0.0	1.12	0.41	0.66	0.84	4.19	23292	2976	6	0	0	0	0	logfile
✔	7YLA	33904	2023-04-25	2022-07-25	2.52	2.04	2.52	1.6	0.006	0.71	0.0	0.04	14.58	0.01	1.980	8.85	0.75	4.3	95.5	0.3	-0.94	0.81	0.81	3.97	1.6	0.007	0.66	0.0	0.04	15.01	0.01	1.842	11.07	1.04	4.6	95.3	0.1	-0.79	1.10	0.83	0.84	3.60	125784	3775	36	2994	6	0	32052	logfile
✔	7ZGo	14709	2023-04-20	2022-04-04	2.55	2.04	2.53	2.6	0.008	1.24	0.0	0.06	16.84	0.00	2.170	9.40	0.00	3.4	96.6	0.0	1.35	0.50	0.76	3.14	2.6	0.002	0.50	0.0	0.04	16.48	0.00	2.254	8.96	0.52	3.1	96.9	0.0	2.18	1.09	0.53	0.79	3.51	7754	940	6	0	21	24	0	logfile
✔	8AG4	15415	2023-04-22	2022-07-19	2.46	2.04	2.48	1.7	0.003	0.49	0.0	0.04	13.59	0.00	2.170	5.34	0.00	3.9	96.1	0.0	0.77	0.82	0.83	4.04	1.7	0.003	0.50	0.0	0.04	15.81	0.00	2.166	5.88	0.87	3.4	96.6	0.0	0.91	0.31	0.81	0.83	3.66	11155	1384	4	0	0	0	0	logfile
✔	7UZQ	26916	2023-04-25	2022-05-09	2.17	2.05	2.16	2.1	0.006	0.92	0.0	0.05	16.21	0.01	2.215	4.59	2.27	1.8	98.0	0.2	2.16	0.68	0.87	5.59	2.1	0.004	0.62	0.0	0.04	16.14	0.00	2.133	5.32	1.89	2.0	97.9	0.1	1.79	0.24	0.69	0.88	5.85	20617	1315	10	0	4	235	10214	logfile
✔	7RNN	24580	2023-04-20	2021-07-29	2.86	2.05	—	3.2	0.008	0.80	0.0	0.14	13.56	0.00	1.929	6.74	0.55	3.4	96.6	0.0	-1.11	0.50	0.76	5.00	3.2	0.004	0.64	0.0	0.04	15.50	0.00	2.212	6.34	1.09	1.9	98.1	0.0	0.60	0.97	0.49	0.87	4.03	4000	540	2	0	2	0	0	logfile
✔	8EA0	27970	2023-04-19	2022-08-27	2.56	2.05	2.66	1.9	0.003	0.55	0.0	0.04	12.24	0.00	2.237	8.88	0.00	4.3	95.7	0.0	-0.24	0.72	0.77	2.21	1.9	0.003	0.56	0.0	0.04	15.18	0.00	2.051	8.02	0.84	5.3	94.7	0.0	1.64	0.46	0.74	0.80	3.17	2286	285	1	0	2	0	0	logfile
✔	7UZS	26917	2023-04-21	2022-05-09	2.2	2.05	2.19	2.0	0.004	0.72	0.0	0.05	17.96	0.01	2.217	2.70	1.79	1.1	98.9	0.0	1.09	0.64	0.87	6.60	2.1	0.004	0.58	0.0	0.04	17.92	0.00	2.030	4.15	2.15	2.2	97.8	0.0	1.03	0.31	0.64	0.87	6.34	10550	658	1	0	0	193	5183	logfile
✔	8GVK	32099	2023-04-20	2022-09-15	2.2	2.06	2.20	2.2	0.006	1.29	0.0	0.06	15.35	0.00	2.057	5.53	4.07	3.4	94.0	2.6	-1.54	0.65	0.80	5.76	2.1	0.003	0.77	0.0	0.04	15.42	0.00	2.211	9.90	2.62	4.3	94.9	0.9	-0.94	0.88	0.74	0.85	6.36	3567	476	8	0	0	19	0	logfile
✘	7ZL1	14774	2023-04-28	2022-04-13	2.5	2.06	2.45	2.4	0.007	0.88	0.0	0.06	14.64	0.01	2.033	2.59	0.65	5.7	93.3	1.0	-0.02	0.73	0.86	6.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27257	1720	24	0	8	379	13574	logfile
✔	6WZG	21972	2023-04-21	2020-05-13	2.3	2.06	2.21	2.3	0.012	1.56	18.0	0.12	14.02	0.01	2.270	4.92	1.65	2.0	98.0	0.0	0.81	0.66	0.71	4.83	2.3	0.004	0.62	0.0	0.04	16.41	0.00	2.112	6.07	1.54	1.9	98.1	0.0	1.42	0.99	0.73	0.87	5.09	8939	1165	6	0	0	0	0	logfile
✔	7NA7	24267	2023-04-21	2021-06-20	2.7	2.07	—	2.0	0.006	1.04	5.0	0.22	12.93	0.01	2.178	7.05	0.61	1.6	98.4	0.0	0.32	0.76	0.75	3.53	1.9	0.004	0.79	0.0	0.07	15.85	0.00	2.129	9.26	2.34	2.5	97.5	0.0	0.49	0.54	0.81	0.82	3.65	9036	1142	7	0	2	0	0	logfile
✔	7UAF	26423	2023-04-24	2022-03-12	2.4	2.07	3.04	1.6	0.012	1.82	13.0	0.10	13.98	0.02	1.783	1.19	0.16	3.1	96.9	0.0	-0.18	0.80	0.80	5.45	1.6	0.004	0.64	0.0	0.04	17.33	0.00	1.873	6.71	2.11	3.7	96.3	0.0	-0.06	1.19	0.83	0.83	4.25	17864	2131	22	0	58	0	0	logfile

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