Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7S8P	24900	2023-04-20	2021-09-18	2.6	2.11	2.62	1.8	0.005	0.75	0.0	0.05	12.81	0.00	2.183	3.18	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.8	0.004	0.67	0.0	0.04	15.58	0.00	2.121	3.18	2.61	5.4	94.6	0.0	0.13	0.36	0.84	0.84	3.71	8093	1089	5	0	1	0	0	logfile
✔	7VAW	31868	2023-04-29	2021-08-30	2.7	2.11	2.77	2.6	0.004	0.58	0.0	0.04	13.19	0.00	1.960	4.58	0.03	1.4	98.6	0.0	0.85	0.51	0.78	3.78	2.5	0.004	0.62	0.0	0.04	16.74	0.01	1.951	7.95	1.62	2.6	97.4	0.0	0.30	0.51	0.57	0.83	3.54	29553	3788	16	0	5	0	0	logfile
✔	7UM5	26597	2023-04-20	2022-04-06	2.73	2.12	2.75	1.9	0.003	0.57	0.0	0.04	11.84	0.00	2.281	2.29	0.00	3.8	96.2	0.0	-0.74	0.82	0.82	4.55	1.9	0.003	0.61	0.0	0.04	14.14	0.00	2.252	3.96	1.06	4.1	95.9	0.0	0.30	0.34	0.83	0.83	3.86	8277	1104	6	0	1	1	0	logfile
✔	8E9Y	27968	2023-04-20	2022-08-27	2.79	2.12	2.79	1.9	0.005	0.81	0.0	0.05	13.31	0.00	2.217	12.62	0.12	5.2	94.8	0.0	-1.06	0.76	0.75	3.19	1.9	0.003	0.59	0.0	0.04	15.56	0.00	2.203	9.72	1.73	4.1	95.8	0.1	-0.25	0.36	0.76	0.76	2.63	8479	1123	6	0	1	0	0	logfile
✔	7SQ6	25377	2023-04-23	2021-11-04	2.32	2.12	—	2.3	0.006	0.78	0.0	0.06	16.59	0.00	2.408	4.99	0.00	2.8	97.2	0.0	1.57	0.69	0.88	4.86	2.3	0.003	0.56	0.0	0.04	16.68	0.00	2.225	3.43	2.57	1.6	98.4	0.0	2.19	0.92	0.70	0.90	4.55	15342	1868	16	0	14	12	0	logfile
✔	7ZHG	14731	2023-04-22	2022-04-06	2.25	2.12	2.20	2.2	0.016	0.85	3.0	0.04	13.95	0.06	1.889	2.84	1.41	3.3	96.7	0.0	0.18	0.70	0.86	5.31	2.2	0.004	1.22	0.0	0.04	16.05	0.01	1.874	3.96	0.88	2.9	97.1	0.0	0.54	0.38	0.72	0.88	4.97	64278	3601	69	1533	96	2083	0	logfile
✔	6UVA	20906	2023-04-21	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.04	0.00	2.207	6.66	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.63	0.0	0.04	18.40	0.00	2.148	9.03	3.26	4.6	95.4	0.0	0.18	1.31	0.66	0.79	2.96	9561	1199	7	0	0	0	0	logfile
✔	7S8o	24899	2023-04-20	2021-09-18	2.58	2.12	2.59	1.9	0.007	0.72	0.0	0.05	13.18	0.00	2.102	3.18	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	1.9	0.002	0.53	0.0	0.04	15.63	0.00	2.207	3.18	0.92	4.4	95.6	0.0	1.05	0.40	0.83	0.83	3.24	8331	1101	6	0	1	0	0	logfile
✔	7UM6	26598	2023-04-20	2022-04-06	2.79	2.13	2.81	1.9	0.012	0.64	0.0	0.04	11.16	0.00	2.359	2.38	0.12	3.8	96.2	0.0	-0.54	0.82	0.81	4.30	2.0	0.003	0.61	0.0	0.04	14.17	0.00	2.248	4.01	1.81	2.8	97.2	0.0	0.66	0.38	0.83	0.83	3.39	8175	1094	6	0	1	0	0	logfile
✔	7S8M	24897	2023-04-20	2021-09-18	2.54	2.13	2.54	2.0	0.004	0.59	0.0	0.04	12.64	0.00	2.171	6.57	0.00	4.1	95.9	0.0	0.46	0.79	0.80	4.13	2.0	0.003	0.57	0.0	0.04	14.98	0.00	2.210	6.76	2.06	4.1	95.9	0.0	1.26	0.32	0.81	0.83	3.81	8346	1102	6	0	0	0	0	logfile
✔	7UM7	26599	2023-04-20	2022-04-06	2.75	2.13	2.74	1.9	0.002	0.48	0.0	0.04	12.58	0.01	2.220	2.88	0.00	2.8	97.2	0.0	-0.25	0.81	0.80	4.23	1.9	0.005	0.64	0.0	0.04	15.12	0.00	2.206	3.51	1.68	4.1	95.9	0.0	0.51	0.97	0.83	0.83	4.04	8165	1089	6	0	1	0	0	logfile
✘	8B14	15802	2023-04-24	2022-09-09	2.6	2.13	2.61	2.0	0.007	0.68	0.0	0.05	16.80	0.01	2.163	5.79	0.79	2.8	97.2	0.0	0.27	0.80	0.81	5.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18810	1243	3	0	2	0	9112	logfile
✔	8DWC	27752	2023-04-20	2022-08-01	2.87	2.13	2.85	2.0	0.008	0.65	0.0	0.05	12.54	0.00	2.095	7.28	0.00	4.8	95.2	0.0	-1.14	0.76	0.81	4.35	2.0	0.003	0.56	0.0	0.04	15.16	0.00	2.147	5.43	0.59	3.7	96.3	0.0	1.33	0.36	0.77	0.83	3.20	8298	1102	6	0	0	0	0	logfile
✔	7V9L	31824	2023-04-20	2021-08-26	2.6	2.13	—	1.8	0.004	0.69	0.0	0.05	13.08	0.01	2.120	3.88	0.00	3.8	96.2	0.0	0.00	0.67	0.70	3.73	1.8	0.004	0.61	0.0	0.04	15.75	0.00	2.140	11.25	1.84	2.3	97.7	0.0	0.73	0.50	0.77	0.79	3.06	8047	1019	5	0	0	0	0	logfile
✔	8HA0	34585	2023-04-21	2022-10-26	2.62	2.14	2.52	2.0	0.005	0.78	2.0	0.05	13.83	0.01	1.689	11.43	4.53	2.2	97.2	0.6	-0.68	0.76	0.78	2.69	2.0	0.005	0.62	0.0	0.04	16.38	0.01	2.191	6.20	2.82	3.3	96.4	0.4	0.99	1.31	0.79	0.83	3.88	9385	1155	6	0	7	0	0	logfile
✔	7PQT	13604	2023-04-21	2021-09-20	2.65	2.14	—	2.9	0.011	0.87	0.0	0.05	18.50	0.01	2.130	13.52	10.42	6.9	92.4	0.7	-3.82	0.76	0.71	4.07	2.9	0.004	0.77	0.0	0.04	18.55	0.00	2.136	11.45	5.71	5.1	94.6	0.3	-0.06	0.39	0.81	0.85	3.62	10464	1272	10	0	4	8	0	logfile
✔	7WCM	32424	2023-04-20	2021-12-20	2.33	2.14	—	2.2	0.005	0.70	0.0	0.16	14.13	0.00	2.281	3.66	0.00	2.5	97.5	0.0	1.05	0.64	0.84	4.03	2.2	0.002	0.55	0.0	0.04	15.98	0.00	2.281	3.30	1.02	2.0	98.0	0.0	1.56	0.31	0.63	0.87	4.04	8232	1047	5	0	1	0	0	logfile
✔	6RW4	10021	2023-04-26	2019-06-03	2.97	2.14	2.98	2.8	0.008	0.67	0.0	0.08	13.18	0.01	1.650	2.42	0.06	3.0	97.0	0.1	-2.57	0.85	0.84	4.78	2.8	0.004	0.65	0.0	0.04	14.61	0.01	1.675	3.45	0.88	1.9	98.0	0.0	1.04	1.98	0.88	0.88	4.29	128080	5920	47	955	85	59	59211	logfile
✔	7SQG	25384	2023-04-20	2021-11-05	2.6	2.14	—	1.9	0.004	0.60	0.0	0.05	13.94	0.00	2.423	3.35	0.00	3.0	97.0	0.0	1.39	0.75	0.77	3.39	1.8	0.006	0.65	0.0	0.05	18.17	0.00	2.082	8.84	1.74	3.9	96.1	0.0	1.31	0.97	0.81	0.83	3.63	6630	810	6	0	12	0	0	logfile
✔	7LEZ	23295	2023-04-28	2021-01-15	4.15	2.14	4.23	3.9	0.007	1.20	0.0	0.06	10.28	0.01	1.255	11.76	0.91	10.1	89.2	0.7	-4.35	0.77	0.65	—	3.9	0.004	0.85	0.0	0.05	11.82	0.01	1.347	22.59	0.00	10.7	89.2	0.2	-1.86	1.82	0.78	0.66	—	27794	3654	20	0	12	0	0	logfile

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