Table showing results for November 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N0L	24108	2021-11-01	2021-05-25	2.8	2.17	—	3.1	0.065	1.95	0.0	0.04	21.58	0.00	1.675	13.40	9.23	2.0	98.0	0.0	-6.10	0.56	0.80	3.16	3.1	0.003	0.67	0.0	0.04	19.53	0.00	2.206	13.40	4.06	0.5	99.5	0.0	1.98	1.26	0.57	0.81	2.01	5270	626	4	0	2	0	0	logfile
✔	6LXV	30007	2021-11-01	2020-02-12	2.1	2.18	—	2.2	0.025	1.66	0.0	0.12	16.07	0.01	2.196	2.01	2.81	3.9	95.9	0.1	-1.79	0.78	0.91	6.69	2.2	0.002	0.54	0.0	0.04	16.35	0.00	2.202	4.67	0.68	2.6	97.4	0.0	1.03	0.93	0.79	0.91	6.23	54924	6448	24	0	16	2967	0	logfile
✔	6X3T	22032	2021-11-02	2020-05-21	2.55	2.18	2.60	2.5	0.004	0.60	0.0	0.04	13.07	0.00	2.171	5.94	2.28	3.0	97.0	0.0	-0.78	0.73	0.82	4.33	2.5	0.003	0.57	0.0	0.04	15.70	0.00	2.133	6.26	2.87	2.3	97.7	0.0	1.05	1.11	0.76	0.84	4.13	17415	2121	18	0	27	0	0	logfile
✔	7L1R	23116	2021-11-03	2020-12-15	3.1	2.19	—	2.1	0.011	1.76	28.0	0.11	14.03	0.01	1.965	4.03	3.32	3.3	96.7	0.0	-0.59	0.65	0.71	2.77	2.0	0.004	0.73	0.0	0.05	18.00	0.01	1.880	9.96	1.21	3.6	96.4	0.0	0.01	1.15	0.78	0.80	2.63	24199	3118	13	0	12	0	0	logfile
✔	7AQC	11862	2021-11-05	2020-10-21	2.99	2.20	—	2.5	0.004	0.83	0.0	0.05	16.62	0.01	1.862	5.10	0.13	5.4	94.6	0.0	-1.91	0.83	0.80	2.39	2.5	0.008	0.82	0.0	0.05	17.27	0.01	2.080	9.01	2.90	6.1	93.8	0.1	-0.78	0.54	0.86	0.84	2.94	95378	3752	34	3077	0	0	0	logfile
✘	7JZ6	22530	2021-11-03	2020-09-01	2.53	2.20	—	2.2	0.009	1.04	8.0	0.11	19.13	0.01	1.219	8.05	11.17	7.8	92.2	0.0	-3.03	0.58	0.65	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20842	2646	12	0	4	18	0	logfile
✔	6X19	21993	2021-11-02	2020-05-18	2.1	2.20	2.11	2.1	0.009	1.31	6.0	0.08	14.25	0.01	2.134	12.92	1.01	2.7	97.3	0.1	-1.61	0.73	0.84	4.93	2.2	0.006	1.03	0.0	0.04	16.64	0.00	2.132	7.53	0.83	2.0	98.0	0.0	1.04	1.01	0.71	0.87	4.54	10277	1258	9	0	1	136	0	logfile
✔	7F2o	31429	2021-11-01	2021-06-11	2.9	2.20	—	2.1	0.003	0.57	0.0	0.04	12.79	0.01	2.194	5.48	0.41	3.2	96.8	0.0	-0.75	0.70	0.68	3.19	2.0	0.003	0.70	0.0	0.04	16.03	0.00	2.016	12.87	2.04	2.2	97.8	0.0	0.99	0.70	0.76	0.77	2.75	9004	1150	6	0	0	0	0	logfile
✔	7EZM	31389	2021-11-01	2021-06-01	2.9	2.20	—	2.0	0.011	1.07	1.0	0.15	13.21	0.01	2.228	4.72	0.94	3.8	96.2	0.0	-0.87	0.76	0.76	3.60	2.0	0.003	0.75	0.0	0.07	16.34	0.00	2.153	11.01	2.51	2.1	97.9	0.0	0.51	0.64	0.79	0.80	2.88	9008	1171	6	0	0	0	0	logfile
✔	6W6P	21562	2021-11-04	2020-03-17	2.9	2.21	—	1.7	0.010	1.07	0.0	0.06	16.55	0.01	1.989	6.47	16.52	12.1	87.6	0.3	-4.00	0.77	0.84	2.96	1.7	0.006	0.83	0.0	0.05	16.36	0.01	1.976	6.13	8.53	9.6	90.3	0.1	-2.00	1.60	0.78	0.85	2.67	133554	5058	51	4378	4	0	0	logfile
✔	7PiL	13441	2021-11-03	2021-08-20	2.5	2.21	—	2.4	0.005	0.92	0.0	0.05	16.34	0.01	2.058	1.90	0.21	1.7	98.3	0.0	1.10	0.73	0.84	5.38	2.4	0.004	0.74	0.0	0.04	17.79	0.00	1.847	7.21	1.48	1.1	98.9	0.0	2.68	1.26	0.73	0.86	4.72	22480	2291	66	0	73	4	0	logfile
✔	3J89	6123	2021-11-01	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	2.11	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.003	0.51	0.0	0.03	20.51	0.00	2.109	10.19	1.00	1.0	99.0	0.0	3.00	1.99	0.81	0.79	0.04	9025	551	19	0	0	0	4598	logfile
✔	7JVR	22511	2021-11-01	2020-08-22	2.8	2.21	—	2.0	0.016	0.95	0.0	0.07	8.77	0.01	2.235	4.64	0.00	2.8	97.2	0.0	-0.85	0.74	0.74	2.70	2.1	0.004	0.76	0.0	0.04	14.53	0.00	2.154	16.24	2.88	2.6	97.4	0.0	0.58	0.71	0.76	0.77	2.33	8872	1126	6	0	1	0	0	logfile
✔	6XS6	22301	2021-11-03	2020-07-15	3.7	2.21	—	2.2	0.004	0.83	0.0	0.05	14.26	0.01	2.240	4.49	0.00	6.1	93.9	0.0	-1.99	0.57	0.59	2.30	2.2	0.012	1.21	2.0	0.04	15.91	0.01	2.160	9.14	0.15	5.3	94.7	0.0	-0.90	0.65	0.57	0.59	2.18	18294	2357	3	0	0	0	0	logfile
✔	6WWN	21941	2021-11-02	2020-05-09	3.5	2.22	3.47	2.2	0.012	0.92	0.0	0.07	14.98	0.01	1.991	6.13	0.66	6.7	93.1	0.2	-3.70	0.54	0.74	3.19	2.2	0.004	0.69	0.0	0.04	16.94	0.00	1.982	7.53	0.66	4.4	95.6	0.0	-0.56	1.06	0.57	0.78	3.13	9784	1230	6	1	6	0	0	logfile
✔	7L1S	23117	2021-11-03	2020-12-15	3.6	2.22	—	2.3	0.011	1.81	37.0	0.12	14.05	0.01	2.011	4.65	4.07	3.3	96.6	0.2	-0.43	0.62	0.68	1.03	1.8	0.005	0.87	0.0	0.05	17.96	0.01	1.820	18.78	0.78	4.3	95.7	0.0	-0.18	1.73	0.66	0.69	0.77	24176	3118	12	0	11	0	0	logfile
✘	6XiT	22200	2021-11-03	2020-06-21	3.3	2.22	—	3.5	0.010	0.97	0.0	0.06	14.19	0.01	1.894	10.11	0.74	4.0	96.0	0.0	-3.79	0.65	0.73	3.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10403	1308	8	0	7	0	0	logfile
✔	7LJC	23390	2021-11-01	2021-01-28	3.0	2.23	—	2.1	0.022	1.12	0.0	0.52	9.06	0.01	2.282	5.07	0.11	2.8	97.2	0.0	-1.06	0.78	0.81	3.11	2.0	0.003	1.11	0.0	0.16	15.05	0.01	2.115	16.46	2.68	2.6	97.4	0.0	0.52	1.25	0.76	0.79	3.01	8544	1040	6	0	14	0	0	logfile
✔	7NJ1	12369	2021-11-02	2021-02-14	2.9	2.23	—	1.9	0.005	0.70	1.0	0.05	13.54	0.00	2.211	9.21	1.09	7.4	92.4	0.2	-2.39	0.75	0.73	2.14	2.0	0.007	1.02	0.0	0.04	16.73	0.01	2.133	11.64	1.18	5.8	94.1	0.1	0.91	0.58	0.77	0.76	2.03	11096	1501	2	0	0	0	0	logfile
✔	7EiB	31145	2021-11-01	2021-03-30	3.0	2.24	—	2.0	0.005	0.86	0.0	0.05	12.65	0.01	2.306	3.38	0.27	2.0	98.0	0.0	-0.34	0.74	0.75	3.17	2.0	0.003	0.65	0.0	0.04	16.36	0.01	2.076	10.90	1.75	2.0	98.0	0.0	1.23	1.22	0.75	0.77	1.89	7204	928	5	0	0	0	0	logfile

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