Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q27	18070	2023-11-14	2023-08-01	2.02	1.98	1.92	2.0	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.3	97.7	0.0	-1.63	0.21	0.69	8.02	2.0	0.002	0.54	0.0	0.05	17.00	0.00	2.208	1.57	0.51	2.5	97.5	0.0	-1.37	1.20	0.34	0.88	7.21	7002	453	6	0	0	0	3567	logfile
✔	7P6B	13224	2023-11-13	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.005	0.67	0.0	0.05	17.01	0.00	2.132	7.10	0.43	4.7	95.3	0.0	-2.28	2.23	0.49	0.88	6.77	4060	540	5	0	0	0	0	logfile
✔	7PBW	13307	2023-11-14	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.004	0.76	0.0	0.04	14.47	0.01	2.150	7.99	0.00	0.0	100.0	0.0	4.46	0.28	0.77	0.90	7.32	9500	873	54	0	81	230	0	logfile
✘	6X1A	21994	2023-11-15	2020-05-18	2.5	1.99	2.50	2.6	0.006	0.93	0.0	0.07	15.41	0.00	2.140	14.37	3.79	3.9	96.1	0.0	-3.15	0.51	0.71	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10140	1262	5	0	1	23	0	logfile
✔	7Z0o	14428	2023-11-15	2022-02-23	2.8	1.99	2.70	1.8	0.004	0.66	0.0	0.04	19.63	0.00	2.189	6.20	1.42	1.7	98.3	0.0	1.08	0.68	0.73	3.27	1.7	0.004	0.59	0.0	0.04	21.28	0.00	2.134	9.34	3.46	2.5	97.5	0.0	1.84	0.50	0.77	0.79	3.27	11864	1256	10	78	0	0	0	logfile
✔	8Q9G	18280	2023-11-14	2023-08-20	2.65	1.99	2.52	2.2	0.011	1.95	0.0	0.09	10.25	0.01	2.554	0.00	0.00	1.6	98.4	0.0	-1.98	0.25	0.66	6.26	2.2	0.003	0.58	0.0	0.05	17.24	0.00	2.070	2.20	0.26	1.9	98.1	0.0	-1.97	1.38	0.35	0.84	6.30	6822	438	6	0	0	0	3480	logfile
✔	7SiM	25144	2023-11-15	2021-10-14	2.7	2.00	—	1.6	0.005	0.71	0.0	0.05	13.50	0.00	2.302	7.90	0.07	1.7	98.3	0.0	0.36	0.74	0.72	3.19	1.6	0.003	0.55	0.0	0.04	15.84	0.00	2.196	9.00	0.81	1.6	98.4	0.0	0.50	0.93	0.75	0.76	3.23	12826	1564	8	0	28	0	0	logfile
✔	7YPG	33999	2023-11-13	2022-08-03	2.5	2.00	2.09	3.0	0.008	0.80	0.0	0.06	14.50	0.00	2.331	9.02	0.00	12.3	87.7	0.0	-5.97	0.40	0.82	3.85	3.0	0.003	0.62	0.0	0.05	18.36	0.00	2.260	10.68	3.21	5.6	94.4	0.0	-5.21	0.66	0.41	0.82	3.09	2676	354	6	0	0	0	0	logfile
✔	7SSS	25413	2023-11-17	2021-11-11	2.4	2.00	2.36	2.4	0.006	0.66	0.0	0.04	14.29	0.02	2.323	3.55	0.00	2.4	97.6	0.0	0.01	0.59	0.78	4.08	2.3	0.003	0.61	0.0	0.04	17.86	0.00	2.126	10.16	2.41	3.9	96.1	0.0	2.31	0.59	0.60	0.78	3.63	12190	1416	24	0	38	170	0	logfile
✔	8ABL	15325	2023-11-20	2022-07-04	2.1	2.00	2.04	2.0	0.010	1.69	34.0	0.11	18.13	0.01	2.060	2.82	4.41	2.2	97.8	0.0	-0.94	0.73	0.90	6.29	2.0	0.002	0.56	0.0	0.04	17.49	0.00	2.204	4.21	1.12	1.1	98.9	0.0	2.18	1.31	0.74	0.90	5.57	31660	3878	33	0	32	0	0	logfile
✔	8BC3	15961	2023-11-16	2022-10-14	2.1	2.00	2.14	2.2	0.014	2.07	0.0	0.11	19.40	0.02	2.310	1.34	11.95	3.3	96.7	0.0	-4.28	0.71	0.84	5.67	2.1	0.003	0.55	0.0	0.04	16.36	0.00	2.123	3.91	0.57	0.6	99.4	0.0	1.74	0.51	0.76	0.88	6.23	16880	2170	30	0	10	500	0	logfile
✔	7TZF	26208	2023-11-15	2022-02-15	2.4	2.00	2.20	2.3	0.010	0.53	0.0	0.04	14.56	0.00	2.252	4.74	1.43	1.0	99.0	0.0	-2.36	0.54	0.77	4.70	2.0	0.003	0.60	0.0	0.04	16.83	0.00	2.219	6.21	1.43	1.8	98.2	0.0	0.83	0.83	0.57	0.83	4.87	10342	1272	13	0	19	25	0	logfile
✔	8D33	27154	2023-11-16	2022-05-31	2.46	2.01	2.48	1.7	0.003	0.55	0.0	0.04	13.00	0.00	2.091	4.01	0.39	3.5	96.5	0.1	0.90	0.73	0.78	3.10	1.7	0.003	0.60	0.0	0.04	17.93	0.00	2.187	7.22	2.65	3.1	96.9	0.0	0.83	1.32	0.73	0.79	2.85	15272	1784	6	46	2	0	0	logfile
✔	8Q9i	18282	2023-11-13	2023-08-20	2.56	2.01	2.38	2.2	0.011	1.80	0.0	0.08	11.44	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-1.34	0.29	0.75	7.51	2.3	0.003	0.57	0.0	0.05	17.83	0.00	2.169	1.76	0.00	0.5	99.5	0.0	-1.49	4.60	0.38	0.87	7.68	3411	219	3	0	0	0	1740	logfile
✔	7RXG	24730	2023-11-15	2021-08-23	2.28	2.01	—	2.3	0.008	1.27	0.0	0.05	17.95	0.00	2.211	14.00	0.18	2.5	97.4	0.2	-0.83	0.61	0.82	4.82	2.3	0.005	0.64	0.0	0.04	17.08	0.01	2.010	16.49	0.89	3.3	96.7	0.0	1.26	0.91	0.66	0.87	5.46	11380	1300	6	0	26	48	96	logfile
✔	8Q2J	18109	2023-11-13	2023-08-02	2.23	2.02	2.19	2.2	0.011	1.72	0.0	0.08	11.08	0.01	2.490	0.14	0.00	1.8	98.2	0.0	-1.62	0.29	0.75	7.51	2.2	0.004	0.61	0.0	0.05	18.89	0.00	2.248	4.91	1.00	0.0	100.0	0.0	-1.89	1.63	0.43	0.90	7.16	3507	462	6	0	0	0	0	logfile
✔	7XJG	33226	2023-11-15	2022-04-17	2.51	2.02	2.63	1.6	0.005	0.71	0.0	0.05	22.26	0.01	1.962	7.64	3.44	4.1	95.9	0.0	-0.23	0.76	0.76	2.80	1.6	0.005	0.60	0.0	0.04	21.99	0.00	2.109	7.44	4.48	4.1	95.9	0.0	0.56	0.25	0.79	0.80	2.61	13167	1066	12	216	2	0	0	logfile
✔	8GXU	34362	2023-11-20	2022-09-21	2.5	2.02	2.54	2.3	0.007	0.57	0.0	0.05	14.47	0.01	1.855	4.64	0.00	3.2	96.8	0.0	0.82	0.64	0.79	4.52	2.2	0.003	0.57	0.0	0.04	17.35	0.00	2.124	6.63	1.27	2.3	97.7	0.0	1.06	1.36	0.70	0.83	4.00	29503	3788	15	0	3	0	0	logfile
✔	7P0Z	13153	2023-11-15	2021-07-01	2.43	2.02	2.41	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.29	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.002	0.49	0.0	0.03	18.12	0.00	2.239	4.38	1.64	0.7	99.3	0.0	5.47	0.55	0.84	0.87	2.18	12873	1652	7	0	0	0	0	logfile
✔	7TJQ	25929	2023-11-20	2022-01-16	3.13	2.03	—	2.0	0.004	0.77	0.0	0.05	13.25	0.01	2.288	1.08	1.03	4.5	95.5	0.0	-0.55	0.75	0.75	3.94	2.0	0.007	0.72	0.0	0.05	15.36	0.00	2.157	9.61	0.40	3.3	96.7	0.0	-0.33	0.94	0.75	0.79	3.15	20538	2679	21	0	12	0	0	logfile

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