Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5FTK	3296	2022-12-19	2016-01-14	2.4	2.04	—	2.0	0.011	1.39	0.0	0.07	12.31	0.01	2.216	25.10	0.65	6.1	93.5	0.4	-4.37	0.44	0.66	3.22	2.0	0.004	0.86	0.0	0.05	17.71	0.01	2.108	17.11	3.82	8.6	91.3	0.1	-1.94	1.08	0.49	0.69	1.72	34374	4338	18	0	12	96	0	logfile
✔	7P6C	13225	2022-12-11	2021-07-15	2.5	2.04	2.40	2.2	0.005	0.80	0.0	0.06	15.34	0.00	2.284	2.77	0.43	2.8	97.2	0.0	-3.05	0.43	0.86	7.56	2.2	0.005	0.72	0.0	0.05	17.16	0.00	2.203	6.13	0.86	3.5	96.5	0.0	-2.59	0.96	0.44	0.89	7.28	8120	1080	10	0	0	0	0	logfile
✔	5FTJ	3295	2022-12-19	2016-01-14	2.3	2.04	—	2.0	0.010	1.30	0.0	0.07	14.89	0.01	1.862	40.83	0.81	5.7	93.3	1.0	-3.32	0.42	0.65	2.67	2.0	0.003	0.83	0.0	0.05	18.78	0.00	2.111	14.73	2.47	6.3	93.6	0.1	-0.85	1.23	0.47	0.68	1.64	34602	4338	18	0	18	120	0	logfile
✔	7ZGo	14709	2022-12-11	2022-04-04	2.55	2.04	2.53	2.6	0.008	1.24	0.0	0.06	16.84	0.00	2.170	9.46	0.00	3.4	96.6	0.0	1.35	0.50	0.76	3.14	2.5	0.003	0.51	0.0	0.04	16.57	0.00	2.229	9.40	1.05	3.3	96.7	0.0	1.93	1.10	0.53	0.79	3.32	7754	940	6	0	21	24	0	logfile
✔	8AG4	15415	2022-12-12	2022-07-19	2.46	2.04	2.48	1.7	0.003	0.49	0.0	0.04	13.59	0.00	2.170	5.34	0.00	3.9	96.1	0.0	0.77	0.82	0.83	4.04	1.7	0.002	0.47	0.0	0.04	15.71	0.00	2.188	6.06	1.03	3.2	96.8	0.0	0.97	0.89	0.81	0.83	3.75	11155	1384	4	0	0	0	0	logfile
✔	6XZ7	10655	2022-12-17	2020-02-03	2.1	2.05	2.12	2.1	0.010	0.81	1.0	0.05	14.53	0.03	1.564	6.42	3.26	2.8	96.8	0.4	-2.20	0.41	0.69	5.50	2.1	0.004	0.75	0.0	0.04	14.76	0.01	1.301	5.96	2.37	2.3	97.5	0.1	0.29	0.92	0.72	0.90	5.25	94915	3351	45	3169	179	528	0	logfile
✔	7TU7	26128	2022-12-20	2022-02-02	2.5	2.05	2.51	1.9	0.010	0.82	0.0	0.04	17.90	0.00	1.947	2.34	0.92	2.5	97.5	0.0	0.68	0.81	0.81	3.84	1.9	0.005	0.54	0.0	0.04	17.26	0.00	1.884	3.44	1.22	2.6	97.4	0.0	1.06	0.34	0.84	0.85	3.95	19932	2586	12	0	24	0	0	logfile
✔	7UZS	26917	2022-12-12	2022-05-09	2.2	2.05	2.19	2.0	0.004	0.72	0.0	0.05	17.96	0.01	2.217	2.70	1.79	1.1	98.9	0.0	1.09	0.64	0.87	6.60	2.0	0.003	0.56	0.0	0.04	17.93	0.00	2.035	4.15	1.43	2.0	98.0	0.0	1.16	0.30	0.64	0.87	6.29	10550	658	1	0	0	193	5183	logfile
✔	7TR0	26077	2022-12-12	2022-01-27	2.7	2.05	2.72	2.0	0.005	0.81	0.0	0.05	15.95	0.00	2.005	4.32	0.66	2.9	97.1	0.0	-0.37	0.61	0.82	4.69	2.0	0.003	0.55	0.0	0.04	16.56	0.00	2.062	5.71	1.87	2.9	97.1	0.0	0.46	0.31	0.61	0.82	4.23	9833	1229	6	1	4	0	0	logfile
✔	8EA0	27970	2022-12-11	2022-08-27	2.56	2.05	2.66	1.9	0.003	0.55	0.0	0.04	12.24	0.00	2.237	8.88	0.00	4.3	95.7	0.0	-0.24	0.72	0.77	2.21	1.9	0.004	0.56	0.0	0.04	14.88	0.00	2.244	7.37	0.42	4.6	95.4	0.0	0.69	0.41	0.74	0.80	2.82	2286	285	1	0	2	0	0	logfile
✔	7JSX	22462	2022-12-20	2020-08-16	2.06	2.05	—	2.1	0.022	1.67	2.0	0.11	11.97	0.01	2.201	6.88	1.26	3.9	96.1	0.0	-1.03	0.74	0.76	5.10	2.0	0.004	0.67	0.0	0.04	14.34	0.00	2.160	8.36	0.80	2.3	97.7	0.0	0.95	0.64	0.83	0.90	6.36	38813	4832	40	0	0	1141	0	logfile
✘	7TU8	26129	2022-12-20	2022-02-02	2.6	2.05	2.59	2.0	0.011	0.83	0.0	0.05	12.98	0.00	1.874	2.90	0.00	2.8	97.0	0.2	0.45	0.81	0.80	4.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20232	2604	12	0	24	0	0	logfile
✔	7RNN	24580	2022-12-11	2021-07-29	2.86	2.05	—	3.2	0.008	0.80	0.0	0.14	14.23	0.00	1.929	6.74	0.55	3.4	96.6	0.0	-1.11	0.50	0.76	5.00	3.2	0.003	0.61	0.0	0.04	16.00	0.00	2.273	5.55	1.37	1.7	98.3	0.0	0.60	0.96	0.49	0.87	4.12	4000	540	2	0	2	0	0	logfile
✔	7UZQ	26916	2022-12-14	2022-05-09	2.17	2.05	2.16	2.1	0.006	0.92	0.0	0.05	16.21	0.01	2.215	4.98	2.27	1.8	98.0	0.2	2.16	0.68	0.87	5.59	2.1	0.004	0.63	0.0	0.04	16.13	0.00	2.124	5.96	2.27	1.9	98.0	0.1	1.73	0.24	0.69	0.88	5.85	20617	1315	10	0	4	235	10214	logfile
✔	7SQ9	25380	2022-12-13	2021-11-04	2.11	2.06	—	2.1	0.009	0.83	0.0	0.41	16.58	0.00	2.223	5.68	0.00	2.2	97.8	0.0	1.70	0.70	0.88	5.56	2.1	0.003	0.56	0.0	0.04	16.23	0.00	2.145	3.81	1.61	2.3	97.7	0.0	1.84	1.22	0.71	0.90	5.39	15810	1876	16	0	18	16	0	logfile
✘	6YBQ	10771	2022-12-18	2020-03-17	1.96	2.06	—	2.0	0.005	0.73	0.0	0.05	13.34	0.01	1.192	2.27	0.00	2.7	97.3	0.0	-1.94	0.82	0.87	6.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	34092	4289	36	0	12	871	0	logfile
✔	6WZG	21972	2022-12-12	2020-05-13	2.3	2.06	2.22	2.3	0.012	1.56	18.0	0.12	14.02	0.01	2.270	5.26	1.65	2.0	98.0	0.0	0.81	0.66	0.71	4.83	2.3	0.003	0.60	0.0	0.04	16.36	0.00	2.122	6.24	2.09	1.8	98.2	0.0	1.49	0.99	0.73	0.87	5.02	8939	1165	6	0	0	0	0	logfile
✔	8GVK	32099	2022-12-11	2022-09-15	2.2	2.06	2.20	2.2	0.006	1.29	0.0	0.06	15.35	0.00	2.057	5.53	4.07	3.4	94.0	2.6	-1.54	0.65	0.80	5.76	2.1	0.005	0.91	0.0	0.05	15.61	0.01	2.211	9.60	3.49	5.3	93.8	0.9	-1.03	0.88	0.74	0.85	6.27	3567	476	8	0	0	19	0	logfile
✔	7ZL1	14774	2022-12-15	2022-04-13	2.5	2.06	2.45	2.4	0.007	0.87	0.0	0.06	14.60	0.01	2.033	2.82	0.65	5.7	93.3	1.0	-0.02	0.73	0.86	6.02	2.4	0.004	0.67	0.0	0.05	15.75	0.00	2.081	5.15	2.30	6.0	93.9	0.1	-0.33	0.55	0.72	0.86	5.19	27257	1720	24	0	8	379	13574	logfile
✔	7UAF	26423	2022-12-13	2022-03-12	2.4	2.07	3.04	1.6	0.012	1.81	13.0	0.10	14.22	0.02	1.783	1.50	0.16	3.1	96.9	0.0	-0.18	0.80	0.80	5.45	1.6	0.006	0.67	0.0	0.05	17.51	0.00	1.847	7.78	2.06	3.7	96.3	0.0	-0.15	1.19	0.83	0.83	4.18	17864	2131	22	0	58	0	0	logfile

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