Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7TU8	26129	2022-07-07	2022-02-02	2.6	2.05	2.59	2.0	0.005	0.65	0.0	0.05	12.81	0.00	1.218	2.90	0.00	2.8	97.0	0.2	0.45	0.81	0.80	4.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20232	2604	12	0	24	0	0	logfile
✔	7JSX	22462	2022-07-07	2020-08-16	2.06	2.05	—	2.1	0.022	1.67	2.0	0.11	11.97	0.01	2.201	6.88	1.26	3.9	96.1	0.0	-1.03	0.74	0.76	5.10	2.0	0.012	1.10	0.0	0.04	14.60	0.00	2.135	9.41	0.80	2.4	97.6	0.0	1.01	0.64	0.82	0.89	6.51	38813	4832	40	0	0	1141	0	logfile
✘	6XZ7	10655	2022-07-06	2020-02-03	2.1	2.05	2.12	2.1	0.007	0.77	1.0	0.05	14.34	0.01	1.128	6.43	3.26	2.8	96.8	0.4	-2.20	0.41	0.69	5.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94915	3351	45	3169	179	528	0	logfile
✘	7SQ9	25380	2022-07-04	2021-11-04	2.11	2.06	—	2.1	0.004	0.63	0.0	0.05	15.57	0.00	1.206	5.68	0.00	2.2	97.8	0.0	1.70	0.70	0.88	5.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15810	1876	16	0	18	16	0	logfile
✔	6YBQ	10771	2022-07-06	2020-03-17	1.96	2.06	—	2.0	0.039	1.58	0.0	0.05	15.05	0.01	1.550	4.72	0.00	2.7	97.3	0.0	-1.94	0.82	0.87	6.46	2.0	0.003	0.72	0.0	0.05	15.91	0.00	2.108	4.76	0.41	2.4	97.6	0.0	0.00	0.46	0.84	0.89	6.08	34092	4289	36	0	12	871	0	logfile
✔	6WZG	21972	2022-07-03	2020-05-13	2.3	2.06	2.22	2.3	0.012	1.56	18.0	0.12	13.99	0.01	2.270	5.26	1.65	2.0	98.0	0.0	0.81	0.66	0.71	4.83	2.3	0.003	0.57	0.0	0.04	16.28	0.00	2.162	6.46	1.76	1.8	98.2	0.0	1.69	0.99	0.74	0.86	4.86	8939	1165	6	0	0	0	0	logfile
✘	7NA7	24267	2022-07-03	2021-06-20	2.7	2.07	—	2.0	0.006	1.02	5.0	0.22	12.93	0.01	1.172	7.49	0.61	1.6	98.4	0.0	0.32	0.76	0.75	3.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9036	1142	7	0	2	0	0	logfile
✔	6X8M	22094	2022-07-06	2020-06-01	2.2	2.07	2.27	2.2	0.005	0.63	0.0	0.05	13.91	0.01	2.264	5.48	0.82	3.3	96.7	0.0	-1.41	0.74	0.86	6.01	2.1	0.004	0.71	0.0	0.05	16.07	0.01	2.103	4.18	0.93	3.2	96.8	0.0	-0.12	0.63	0.77	0.88	5.83	133440	16800	60	0	0	0	0	logfile
✔	6WWo	21942	2022-07-03	2020-05-09	2.8	2.07	2.79	1.9	0.011	1.28	3.0	0.06	15.86	0.02	1.958	6.13	1.99	6.1	93.5	0.3	-4.55	0.58	0.74	4.64	2.0	0.004	0.69	0.0	0.04	17.72	0.00	1.941	8.00	2.75	3.7	96.2	0.1	-0.57	2.43	0.60	0.81	3.89	9784	1230	6	1	5	0	0	logfile
✘	7SQ7	25378	2022-07-04	2021-11-04	2.41	2.07	—	2.2	0.007	0.85	0.0	0.06	15.28	0.01	1.202	5.25	0.00	3.9	96.1	0.0	0.91	0.59	0.84	5.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15305	1852	16	0	13	8	0	logfile
✔	7S8L	24896	2022-07-03	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.57	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	2.0	0.003	0.62	0.0	0.04	15.55	0.01	2.252	3.26	1.34	3.5	96.5	0.0	1.25	0.35	0.85	0.84	3.95	8177	1096	6	0	0	0	0	logfile
✔	6WWU	21948	2022-07-03	2020-05-09	2.7	2.08	2.76	1.9	0.011	1.26	1.0	0.06	16.22	0.02	2.072	6.98	2.78	5.8	94.0	0.2	-3.98	0.60	0.76	4.02	1.9	0.004	0.64	0.0	0.04	17.69	0.00	1.980	7.35	2.30	3.6	96.4	0.1	-0.47	0.68	0.61	0.82	4.01	9688	1216	6	1	4	0	0	logfile
✔	6WWR	21945	2022-07-03	2020-05-09	2.7	2.08	2.69	1.9	0.009	0.96	1.0	0.06	14.63	0.01	1.967	5.49	0.57	5.8	94.2	0.0	-3.62	0.60	0.77	5.00	2.0	0.004	0.67	0.0	0.04	16.99	0.00	1.916	6.86	1.72	3.9	96.1	0.0	-0.28	1.08	0.62	0.84	3.85	9719	1220	6	1	4	0	0	logfile
✔	7RH9	24458	2022-07-04	2021-07-16	2.61	2.09	—	2.5	0.003	0.57	0.0	0.04	13.27	0.01	2.214	5.89	0.00	1.3	98.7	0.0	1.30	0.64	0.84	4.07	2.5	0.003	0.49	0.0	0.04	15.66	0.00	2.167	8.77	0.87	1.6	98.4	0.0	2.64	0.91	0.64	0.86	3.93	14680	1792	4	0	0	0	0	logfile
✔	7TYo	26190	2022-07-03	2022-02-14	2.7	2.09	2.60	2.4	0.002	0.46	0.0	0.04	12.83	0.00	2.176	5.61	1.37	2.0	98.0	0.0	-3.13	0.54	0.74	3.81	2.7	0.010	0.79	1.0	0.04	16.30	0.01	2.091	8.58	2.33	2.3	97.7	0.0	-0.03	1.06	0.55	0.76	3.60	9052	1141	6	0	4	0	0	logfile
✔	7LF0	23296	2022-07-06	2021-01-15	3.68	2.09	3.76	3.7	0.008	1.10	0.0	0.06	10.18	0.01	2.157	7.70	1.09	11.4	87.8	0.8	-4.41	0.51	0.54	1.30	3.6	0.007	1.00	0.0	0.05	14.82	0.01	2.054	21.55	0.57	13.0	86.8	0.2	-2.82	0.95	0.52	0.55	1.18	34548	4542	18	0	0	0	0	logfile
✔	6UUS	20901	2022-07-03	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.71	3.27	2.8	97.2	0.0	-2.25	0.57	0.73	3.22	2.3	0.002	0.57	0.0	0.04	17.80	0.00	2.176	9.52	2.25	2.6	97.4	0.0	0.57	1.00	0.63	0.76	3.20	9308	1190	7	0	0	0	0	logfile
✔	6ZJA	11233	2022-07-05	2020-06-28	2.0	2.10	2.09	2.1	0.006	0.86	0.0	0.06	14.19	0.01	1.974	0.84	1.37	4.1	95.9	0.0	-0.40	0.79	0.87	6.97	2.1	0.004	0.72	0.0	0.05	15.95	0.01	1.820	1.85	0.56	4.3	95.7	0.0	0.02	0.39	0.78	0.89	6.77	77951	9684	60	0	36	3191	0	logfile
✔	7TBG	25798	2022-07-05	2021-12-22	2.5	2.10	2.44	1.8	0.006	0.76	0.0	0.05	13.03	0.01	2.268	1.99	0.57	3.2	96.8	0.0	0.60	0.75	0.79	4.65	1.8	0.004	0.58	0.0	0.04	16.02	0.00	2.091	5.00	1.60	2.1	97.9	0.0	2.32	1.13	0.77	0.82	3.72	19679	1190	6	0	5	20	9858	logfile
✔	7QKY	14057	2022-07-03	2021-12-19	1.86	2.10	1.91	2.0	0.011	1.75	3.0	0.09	12.76	0.01	2.522	1.04	0.61	4.7	95.3	0.0	-3.08	0.33	0.75	8.32	2.0	0.003	0.69	0.0	0.05	16.56	0.00	2.218	4.85	0.61	6.2	93.8	0.0	-3.18	1.00	0.40	0.84	7.35	5760	396	6	0	0	0	2862	logfile

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