Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WCM	32424	2023-04-20	2021-12-20	2.33	2.14	—	2.2	0.005	0.70	0.0	0.16	14.13	0.00	2.281	3.66	0.00	2.5	97.5	0.0	1.05	0.64	0.84	4.03	2.2	0.002	0.55	0.0	0.04	15.98	0.00	2.281	3.30	1.02	2.0	98.0	0.0	1.56	0.31	0.63	0.87	4.04	8232	1047	5	0	1	0	0	logfile
✔	7WiG	32529	2023-04-21	2022-01-03	2.7	2.14	—	1.8	0.006	0.75	0.0	0.05	13.13	0.01	2.192	6.75	0.00	2.0	98.0	0.0	1.11	0.78	0.77	3.19	1.8	0.002	0.90	0.0	0.04	15.48	0.00	2.195	5.51	1.13	2.0	98.0	0.0	1.42	0.33	0.79	0.80	2.94	8931	1139	6	0	1	0	0	logfile
✔	8DBK	27287	2023-04-23	2022-06-14	2.1	2.15	2.19	2.1	0.012	1.13	2.0	0.06	18.10	0.04	1.760	5.45	1.07	3.9	96.0	0.1	0.54	0.71	0.86	6.31	2.1	0.003	1.50	0.0	0.05	16.92	0.00	1.840	5.62	1.52	3.5	96.5	0.0	0.65	0.40	0.72	0.90	6.08	14612	1868	18	0	30	12	0	logfile
✔	6ZKL	11253	2023-04-24	2020-06-30	3.1	2.15	—	2.2	0.006	1.01	0.0	1.03	11.90	0.01	2.242	5.64	0.07	3.9	96.1	0.0	-2.99	0.56	0.74	3.16	2.1	0.009	1.62	0.0	0.31	16.09	0.01	2.040	15.02	0.31	4.7	95.3	0.0	0.08	0.71	0.56	0.75	2.74	67492	8162	71	0	47	0	0	logfile
✔	7M3N	23658	2023-04-20	2021-03-18	2.4	2.15	2.40	1.9	0.005	0.63	0.0	0.04	15.95	0.00	2.168	5.79	4.28	4.3	95.6	0.1	-2.53	0.43	0.82	4.98	2.0	0.002	0.55	0.0	0.04	16.96	0.00	2.273	6.81	2.75	3.7	96.3	0.0	-0.46	0.48	0.45	0.84	4.74	6004	759	3	0	0	0	0	logfile
✔	3JAD	6344	2023-04-22	2015-06-08	3.9	2.16	—	3.8	0.008	1.33	0.0	0.06	8.45	0.00	2.250	16.87	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	3.0	0.003	0.76	0.0	0.04	12.95	0.00	2.195	16.00	0.17	4.0	96.0	0.0	0.22	1.23	0.70	0.77	0.37	12705	1685	15	0	15	0	0	logfile
✔	7N5E	24187	2023-04-24	2021-06-05	2.8	2.16	2.68	1.5	0.023	1.54	0.0	0.09	10.26	0.01	2.378	0.36	0.00	1.2	98.8	0.0	1.87	0.80	0.80	4.07	1.9	0.003	0.58	0.0	0.04	16.11	0.00	2.127	6.31	1.10	1.8	98.2	0.0	2.74	0.58	0.78	0.79	3.16	17915	2176	14	0	7	0	0	logfile
✔	7TYF	26178	2023-04-21	2022-02-13	2.2	2.16	2.14	2.2	0.004	0.57	0.0	0.04	14.45	0.00	2.234	4.87	0.87	1.8	98.2	0.0	-1.73	0.64	0.82	5.12	2.2	0.003	0.64	0.0	0.04	16.18	0.00	2.202	6.55	1.26	2.3	97.7	0.0	0.96	0.50	0.66	0.86	4.67	10331	1266	12	0	16	83	0	logfile
✔	7W4A	32299	2023-04-22	2021-11-26	2.76	2.16	2.69	2.2	0.006	0.71	0.0	0.04	13.12	0.00	2.048	7.08	0.09	2.3	97.7	0.0	1.29	0.63	0.77	3.24	2.2	0.002	0.54	0.0	0.04	15.88	0.00	2.033	6.62	1.80	2.4	97.6	0.0	1.44	0.43	0.63	0.79	2.98	9855	1245	5	0	7	12	0	logfile
✔	7XXF	33501	2023-04-29	2022-05-30	2.24	2.16	2.23	2.2	0.023	2.96	0.0	0.05	21.41	0.02	2.014	7.34	1.31	2.8	97.2	0.0	1.59	0.77	0.88	5.31	2.2	0.003	1.46	0.0	0.04	18.67	0.00	1.986	7.47	1.02	2.8	97.2	0.0	2.26	0.89	0.77	0.90	4.60	29826	3004	120	0	98	538	0	logfile
✔	7N5G	24189	2023-04-19	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.57	0.0	0.04	16.52	0.00	2.220	4.78	2.61	1.4	98.6	0.0	2.92	1.20	0.39	0.80	2.57	2926	371	1	0	1	0	0	logfile
✔	8DBH	27284	2023-04-28	2022-06-14	2.2	2.17	2.27	2.1	0.007	0.69	0.0	0.05	15.18	0.00	1.957	4.90	1.94	3.4	96.6	0.0	0.54	0.72	0.85	5.77	2.1	0.002	0.49	0.0	0.05	15.66	0.00	1.961	5.07	1.78	3.7	96.3	0.0	1.16	0.91	0.74	0.90	5.57	28884	3708	36	0	60	24	0	logfile
✔	7P92	13258	2023-04-21	2021-07-23	2.7	2.17	2.57	2.3	0.003	0.56	1.0	0.04	14.12	0.00	1.985	4.69	0.18	3.7	96.3	0.0	0.23	0.52	0.78	3.78	2.4	0.002	0.52	0.0	0.04	17.07	0.00	2.196	5.77	1.20	2.7	97.3	0.0	0.75	1.88	0.51	0.78	3.47	10436	1322	9	0	12	157	0	logfile
✔	8DPH	27635	2023-04-20	2022-07-15	3.2	2.17	3.15	2.0	0.005	0.59	0.0	0.05	9.34	0.00	2.162	2.82	0.73	1.4	98.6	0.0	1.66	0.76	0.73	2.48	2.1	0.003	0.62	0.0	0.04	14.05	0.00	2.202	5.07	0.24	2.8	97.2	0.0	1.06	1.06	0.78	0.77	2.24	8182	1093	6	0	3	0	0	logfile
✔	7SRQ	25401	2023-04-20	2021-11-08	2.7	2.17	—	1.9	0.008	0.80	0.0	0.05	13.54	0.01	2.296	8.67	1.50	2.8	97.2	0.0	0.29	0.70	0.72	4.55	2.7	0.004	0.76	0.0	0.04	15.44	0.00	2.264	8.93	3.50	3.2	96.8	0.0	0.20	0.48	0.72	0.77	3.78	1960	254	1	0	2	0	0	logfile
✘	7XSQ	33431	2023-04-24	2022-05-15	2.88	2.17	2.83	2.1	0.009	0.93	3.0	0.06	17.11	0.01	2.157	2.60	2.74	6.1	93.8	0.1	-2.88	0.77	0.75	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16573	1967	4	34	4	0	0	logfile
✔	7WPC	32682	2023-04-20	2022-01-23	2.57	2.17	—	2.0	0.004	0.72	0.0	0.05	14.23	0.01	2.253	2.54	0.12	4.2	95.8	0.0	-4.19	0.69	0.72	2.24	1.9	0.003	0.61	0.0	0.04	17.18	0.00	1.955	9.72	1.62	3.9	96.1	0.0	-0.76	1.32	0.74	0.81	2.91	8057	980	6	0	9	0	0	logfile
✔	8AG3	15414	2023-04-19	2022-07-19	3.47	2.17	3.26	2.0	0.002	0.60	0.0	0.04	17.16	0.01	2.143	8.90	0.00	6.6	93.4	0.0	-1.45	0.61	0.73	3.03	2.0	0.003	0.64	0.0	0.05	17.42	0.00	2.092	9.28	1.95	7.5	92.5	0.0	-1.11	0.33	0.63	0.77	2.96	2632	322	2	0	0	0	0	logfile
✔	6X3T	22032	2023-04-24	2020-05-21	2.55	2.18	2.60	2.5	0.005	0.66	0.0	0.05	13.21	0.00	2.171	6.00	2.28	3.0	97.0	0.0	-0.78	0.73	0.82	4.33	2.5	0.004	0.62	0.0	0.04	15.86	0.00	2.144	6.89	3.03	2.7	97.3	0.0	0.90	0.38	0.77	0.85	4.10	17415	2121	18	0	27	0	0	logfile
✔	6LXV	30007	2023-04-20	2020-02-12	2.1	2.18	—	2.2	0.025	1.66	0.0	0.12	16.07	0.01	2.196	2.01	2.81	3.9	95.9	0.1	-1.79	0.78	0.91	6.69	2.2	0.002	0.57	0.0	0.04	16.46	0.00	2.149	4.16	0.92	2.3	97.7	0.0	1.03	0.92	0.79	0.91	6.13	54924	6448	24	0	16	2967	0	logfile

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