Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WWo	21942	2022-12-12	2020-05-09	2.8	2.07	2.79	1.9	0.011	1.28	3.0	0.06	15.86	0.02	1.958	6.13	1.99	6.1	93.5	0.3	-4.55	0.58	0.74	4.64	2.0	0.003	0.66	0.0	0.04	17.68	0.00	1.992	9.19	2.94	3.3	96.6	0.1	-0.18	2.14	0.59	0.80	3.83	9784	1230	6	1	5	0	0	logfile
✔	7UAF	26423	2022-12-13	2022-03-12	2.4	2.07	3.04	1.6	0.012	1.81	13.0	0.10	14.22	0.02	1.783	1.50	0.16	3.1	96.9	0.0	-0.18	0.80	0.80	5.45	1.6	0.006	0.67	0.0	0.05	17.51	0.00	1.847	7.78	2.06	3.7	96.3	0.0	-0.15	1.19	0.83	0.83	4.18	17864	2131	22	0	58	0	0	logfile
✔	7NA7	24267	2022-12-12	2021-06-20	2.7	2.07	—	2.0	0.006	1.04	5.0	0.22	12.93	0.01	2.178	7.49	0.61	1.6	98.4	0.0	0.32	0.76	0.75	3.53	1.9	0.004	0.79	1.0	0.07	15.93	0.00	2.005	10.37	1.83	2.4	97.6	0.0	0.48	0.71	0.81	0.82	3.67	9036	1142	7	0	2	0	0	logfile
✔	7UTZ	26795	2022-12-15	2022-04-28	2.4	2.07	—	2.4	0.004	0.68	0.0	0.04	12.23	0.01	2.137	4.00	0.08	3.0	97.0	0.0	-0.05	0.66	0.68	3.51	1.6	0.003	0.56	0.0	0.04	14.95	0.00	1.922	8.63	1.94	3.3	96.7	0.0	0.06	0.78	0.72	0.76	3.37	23679	1536	10	0	8	0	11632	logfile
✔	6WWU	21948	2022-12-12	2020-05-09	2.7	2.08	2.76	1.9	0.011	1.26	1.0	0.06	16.22	0.02	2.072	6.98	2.78	5.8	94.0	0.2	-3.98	0.60	0.76	4.02	1.9	0.003	0.63	0.0	0.04	17.74	0.00	1.999	7.14	1.92	3.2	96.7	0.1	-0.34	0.69	0.61	0.83	3.91	9688	1216	6	1	4	0	0	logfile
✔	6WWR	21945	2022-12-12	2020-05-09	2.7	2.08	2.69	1.9	0.009	0.96	1.0	0.06	14.63	0.01	1.967	5.49	0.57	5.8	94.2	0.0	-3.62	0.60	0.77	5.00	2.0	0.005	0.69	0.0	0.05	16.98	0.00	1.893	7.17	2.01	4.3	95.7	0.0	-0.46	1.08	0.62	0.84	3.96	9719	1220	6	1	4	0	0	logfile
✔	8CSX	26974	2022-12-12	2022-05-13	2.4	2.08	2.44	2.1	0.006	0.79	1.0	0.05	13.62	0.01	2.208	5.36	3.86	1.7	98.2	0.1	1.76	0.69	0.88	5.16	2.1	0.003	0.55	0.0	0.04	15.77	0.00	2.106	6.52	1.29	1.5	98.5	0.0	2.21	0.37	0.68	0.87	4.46	9116	1158	8	0	4	150	0	logfile
✔	7S8L	24896	2022-12-11	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.57	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	2.0	0.004	0.64	0.0	0.04	15.39	0.00	2.272	3.39	1.82	3.5	96.5	0.0	1.25	0.35	0.84	0.84	3.82	8177	1096	6	0	0	0	0	logfile
✔	8DWG	27753	2022-12-12	2022-08-01	2.71	2.08	2.72	1.8	0.006	0.64	0.0	0.05	12.65	0.00	2.106	6.99	0.00	4.5	95.5	0.0	-1.14	0.78	0.81	4.92	1.8	0.004	0.59	0.0	0.04	15.14	0.00	2.107	6.25	1.52	4.3	95.7	0.0	0.76	0.32	0.80	0.84	3.66	8350	1101	7	0	1	0	0	logfile
✔	8E9Z	27969	2022-12-12	2022-08-27	2.69	2.09	2.64	1.9	0.004	0.80	2.0	0.05	15.12	0.01	2.248	9.78	0.34	3.2	96.8	0.0	-1.79	0.79	0.79	2.55	1.9	0.004	0.60	0.0	0.04	15.94	0.00	2.072	7.87	1.03	2.3	97.7	0.0	0.42	0.32	0.79	0.80	2.97	8566	1129	6	0	2	0	0	logfile
✔	7LF0	23296	2022-12-19	2021-01-15	3.68	2.09	3.76	3.7	0.008	1.10	0.0	0.06	10.18	0.01	2.157	7.70	1.09	11.4	87.8	0.8	-4.41	0.51	0.54	1.30	3.6	0.004	0.89	0.0	0.05	14.96	0.01	2.026	21.18	0.65	11.6	88.2	0.2	-2.92	0.99	0.52	0.55	1.05	34548	4542	18	0	0	0	0	logfile
✔	7RH9	24458	2022-12-13	2021-07-16	2.61	2.09	—	2.5	0.003	0.57	0.0	0.04	13.27	0.01	2.214	5.89	0.00	1.3	98.7	0.0	1.30	0.64	0.84	4.07	2.5	0.003	0.50	0.0	0.04	15.76	0.00	2.179	8.63	1.05	1.7	98.3	0.0	2.64	0.91	0.64	0.86	3.96	14680	1792	4	0	0	0	0	logfile
✔	7TYo	26190	2022-12-12	2022-02-14	2.7	2.09	2.60	2.4	0.002	0.46	0.0	0.04	12.83	0.00	2.176	5.61	1.37	2.0	98.0	0.0	-3.13	0.54	0.74	3.81	2.4	0.002	0.51	0.0	0.04	16.11	0.00	2.187	6.12	2.22	1.4	98.6	0.0	0.75	1.05	0.54	0.76	3.42	9052	1141	6	0	4	0	0	logfile
✔	7U67	26362	2022-12-22	2022-03-03	2.5	2.10	2.53	1.8	0.005	0.75	0.0	0.05	17.77	0.00	2.161	3.35	0.91	2.4	97.6	0.0	-0.22	0.79	0.79	3.83	1.8	0.004	0.58	0.0	0.04	17.82	0.00	2.014	4.39	1.64	3.1	96.9	0.0	0.87	0.40	0.83	0.83	3.39	26778	3360	18	0	12	0	0	logfile
✔	7S3H	24823	2022-12-12	2021-09-06	2.5	2.10	2.54	1.7	0.009	1.08	0.0	0.05	16.91	0.01	2.234	3.82	0.11	3.7	96.3	0.0	-1.50	0.75	0.71	1.79	1.7	0.003	0.64	0.0	0.04	18.78	0.00	2.138	12.03	2.29	3.1	96.9	0.0	-0.02	0.75	0.78	0.76	2.09	9966	1030	4	75	1	0	0	logfile
✔	7TQY	26075	2022-12-12	2022-01-27	2.6	2.10	2.62	1.9	0.005	0.85	0.0	0.05	16.19	0.01	1.947	3.28	1.12	3.3	96.7	0.0	0.37	0.62	0.83	3.67	1.9	0.004	0.61	0.0	0.04	16.74	0.00	1.922	6.76	2.33	3.7	96.3	0.0	0.82	0.41	0.61	0.83	3.74	9890	1235	6	1	6	0	0	logfile
✔	8E9X	27967	2022-12-12	2022-08-27	2.7	2.10	2.72	1.9	0.004	0.61	0.0	0.04	12.41	0.00	2.200	6.58	0.00	4.2	95.8	0.0	-0.15	0.78	0.79	3.99	1.9	0.003	0.54	0.0	0.04	15.10	0.00	2.121	6.76	1.38	3.7	96.3	0.0	0.82	0.34	0.80	0.82	3.56	8380	1109	6	0	1	0	0	logfile
✔	7T9N	25763	2022-12-15	2021-12-19	2.9	2.10	—	2.9	0.006	0.72	0.0	0.06	13.08	0.01	2.020	6.26	0.21	4.1	95.9	0.0	0.67	0.70	0.73	3.97	2.9	0.005	0.60	0.0	0.06	15.50	0.00	1.934	7.21	1.24	3.8	96.2	0.0	0.23	1.10	0.77	0.80	4.20	26426	1723	8	0	4	0	13037	logfile
✔	7U65	26360	2022-12-22	2022-03-03	2.8	2.10	2.73	1.9	0.005	0.65	0.0	0.05	12.92	0.01	2.297	2.74	0.46	3.6	96.4	0.0	1.18	0.78	0.77	3.50	1.9	0.003	0.53	0.0	0.04	15.50	0.00	2.154	3.71	0.96	2.8	97.2	0.0	2.45	0.44	0.81	0.81	2.96	26616	3384	12	0	0	0	0	logfile
✔	6UUS	20901	2022-12-12	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.72	3.27	2.8	97.2	0.0	-2.25	0.57	0.73	3.22	2.3	0.003	0.60	0.0	0.04	17.76	0.00	2.168	9.36	2.25	3.6	96.4	0.0	0.60	1.00	0.63	0.78	3.21	9308	1190	7	0	0	0	0	logfile

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