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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8FoZ | 29357 | 2023-11-18 | 2023-01-03 | 2.0 | 2.03 | 2.09 | 2.0 | 0.009 | 0.91 | 0.0 | 0.06 | 15.66 | 0.01 | 2.238 | 2.94 | 1.31 | 0.5 | 99.5 | 0.0 | 0.22 | 0.80 | 0.91 | 7.15 | 2.0 | 0.003 | 0.56 | 0.0 | 0.04 | 15.87 | 0.00 | 2.255 | 2.90 | 1.35 | 0.8 | 99.2 | 0.0 | 0.61 | 0.87 | 0.79 | 0.91 | 7.08 | 23648 | 3072 | 16 | 0 | 16 | 0 | 0 | logfile |
✔ | 7VDA | 31912 | 2023-11-18 | 2021-09-06 | 2.26 | 2.04 | 2.42 | 2.1 | 0.003 | 0.53 | 0.0 | 0.04 | 17.67 | 0.00 | 2.142 | 7.99 | 2.20 | 2.6 | 97.4 | 0.0 | 1.67 | 0.66 | 0.82 | 4.06 | 2.0 | 0.002 | 0.54 | 0.0 | 0.04 | 18.07 | 0.00 | 2.051 | 8.99 | 2.60 | 2.1 | 97.9 | 0.0 | 1.12 | 0.41 | 0.66 | 0.84 | 4.19 | 23292 | 2976 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZGo | 14709 | 2023-11-14 | 2022-04-04 | 2.55 | 2.04 | 2.53 | 2.6 | 0.008 | 1.24 | 0.0 | 0.06 | 16.84 | 0.00 | 2.170 | 9.40 | 0.00 | 3.4 | 96.6 | 0.0 | 1.35 | 0.50 | 0.76 | 3.14 | 2.6 | 0.002 | 0.50 | 0.0 | 0.04 | 16.48 | 0.00 | 2.254 | 8.96 | 0.52 | 3.1 | 96.9 | 0.0 | 2.18 | 1.09 | 0.53 | 0.79 | 3.51 | 7754 | 940 | 6 | 0 | 21 | 24 | 0 | logfile |
✔ | 5FTJ | 3295 | 2023-11-21 | 2016-01-14 | 2.3 | 2.04 | — | 2.0 | 0.010 | 1.30 | 0.0 | 0.07 | 14.89 | 0.01 | 1.862 | 40.83 | 0.81 | 5.7 | 93.3 | 1.0 | -3.32 | 0.42 | 0.65 | 2.67 | 2.0 | 0.005 | 0.91 | 0.0 | 0.05 | 18.72 | 0.01 | 2.036 | 17.11 | 2.68 | 7.2 | 92.7 | 0.1 | -1.40 | 1.22 | 0.47 | 0.68 | 1.91 | 34602 | 4338 | 18 | 0 | 18 | 120 | 0 | logfile |
✔ | 7P6C | 13225 | 2023-11-14 | 2021-07-15 | 2.5 | 2.04 | 2.40 | 2.2 | 0.005 | 0.80 | 0.0 | 0.06 | 15.34 | 0.00 | 2.284 | 2.77 | 0.43 | 2.8 | 97.2 | 0.0 | -3.05 | 0.43 | 0.86 | 7.56 | 2.2 | 0.005 | 0.69 | 0.0 | 0.05 | 17.10 | 0.00 | 2.193 | 5.29 | 0.75 | 3.7 | 96.3 | 0.0 | -2.63 | 0.96 | 0.44 | 0.89 | 7.37 | 8120 | 1080 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 5A1A | 2984 | 2023-11-21 | 2015-04-29 | 2.2 | 2.04 | 2.58 | 2.5 | 0.009 | 1.21 | 0.0 | 0.04 | 13.15 | 0.01 | 0.020 | 14.13 | 1.03 | 3.9 | 95.5 | 0.6 | -1.86 | 0.53 | 0.76 | 4.20 | 2.5 | 0.003 | 0.66 | 0.0 | 0.04 | 17.63 | 0.00 | 1.961 | 10.92 | 2.75 | 2.3 | 97.6 | 0.1 | -0.56 | 1.09 | 0.53 | 0.79 | 3.86 | 33696 | 4088 | 12 | 0 | 20 | 776 | 0 | logfile |
✔ | 5FTK | 3296 | 2023-11-21 | 2016-01-14 | 2.4 | 2.04 | — | 2.0 | 0.011 | 1.39 | 0.0 | 0.07 | 12.31 | 0.01 | 2.216 | 25.01 | 0.65 | 6.1 | 93.5 | 0.4 | -4.37 | 0.44 | 0.66 | 3.22 | 2.0 | 0.004 | 0.86 | 0.0 | 0.05 | 17.78 | 0.01 | 2.112 | 16.73 | 4.31 | 8.6 | 91.3 | 0.1 | -1.98 | 1.25 | 0.50 | 0.70 | 1.75 | 34374 | 4338 | 18 | 0 | 12 | 96 | 0 | logfile |
✔ | 7QKL | 14046 | 2023-11-13 | 2021-12-17 | 2.07 | 2.04 | 1.98 | 2.0 | 0.011 | 2.37 | 0.0 | 0.25 | 12.79 | 0.01 | 2.537 | 0.14 | 0.00 | 3.6 | 96.4 | 0.0 | -1.75 | 0.40 | 0.83 | 7.75 | 2.0 | 0.003 | 0.62 | 0.0 | 0.05 | 17.01 | 0.00 | 2.552 | 3.25 | 0.25 | 2.7 | 97.3 | 0.0 | -1.29 | 2.03 | 0.44 | 0.91 | 7.62 | 3468 | 456 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8AG4 | 15415 | 2023-11-15 | 2022-07-19 | 2.46 | 2.04 | 2.48 | 1.7 | 0.003 | 0.49 | 0.0 | 0.04 | 13.59 | 0.00 | 2.170 | 5.34 | 0.00 | 3.9 | 96.1 | 0.0 | 0.77 | 0.82 | 0.83 | 4.04 | 1.7 | 0.003 | 0.50 | 0.0 | 0.04 | 15.81 | 0.00 | 2.166 | 5.88 | 0.87 | 3.4 | 96.6 | 0.0 | 0.91 | 0.31 | 0.81 | 0.83 | 3.66 | 11155 | 1384 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YLA | 33904 | 2023-11-17 | 2022-07-25 | 2.52 | 2.04 | 2.52 | 1.6 | 0.006 | 0.71 | 0.0 | 0.04 | 14.58 | 0.01 | 1.980 | 8.85 | 0.75 | 4.3 | 95.5 | 0.3 | -0.94 | 0.81 | 0.81 | 3.97 | 1.6 | 0.005 | 0.57 | 0.0 | 0.04 | 14.96 | 0.00 | 1.883 | 11.63 | 0.85 | 4.8 | 95.2 | 0.1 | -0.72 | 1.10 | 0.83 | 0.84 | 3.60 | 125784 | 3775 | 36 | 2994 | 6 | 0 | 32052 | logfile |
✔ | 6XZ7 | 10655 | 2023-11-21 | 2020-02-03 | 2.1 | 2.05 | 2.12 | 2.1 | 0.010 | 0.84 | 1.0 | 0.05 | 14.69 | 0.04 | 1.564 | 6.31 | 3.26 | 2.8 | 96.8 | 0.4 | -2.20 | 0.41 | 0.69 | 5.50 | 2.1 | 0.004 | 0.81 | 0.0 | 0.04 | 14.93 | 0.01 | 1.764 | 5.79 | 2.44 | 2.1 | 97.7 | 0.1 | 0.26 | 0.92 | 0.69 | 0.90 | 5.28 | 94915 | 3351 | 45 | 3169 | 179 | 528 | 0 | logfile |
✔ | 7RNN | 24580 | 2023-11-13 | 2021-07-29 | 2.86 | 2.05 | — | 3.2 | 0.008 | 0.80 | 0.0 | 0.14 | 13.56 | 0.00 | 1.929 | 6.74 | 0.55 | 3.4 | 96.6 | 0.0 | -1.11 | 0.50 | 0.76 | 5.00 | 3.2 | 0.004 | 0.64 | 0.0 | 0.04 | 15.50 | 0.00 | 2.212 | 6.34 | 1.09 | 1.9 | 98.1 | 0.0 | 0.60 | 0.97 | 0.49 | 0.87 | 4.03 | 4000 | 540 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 7UZS | 26917 | 2023-11-15 | 2022-05-09 | 2.2 | 2.05 | 2.19 | 2.0 | 0.004 | 0.72 | 0.0 | 0.05 | 17.96 | 0.01 | 2.217 | 2.70 | 1.79 | 1.1 | 98.9 | 0.0 | 1.09 | 0.64 | 0.87 | 6.60 | 2.1 | 0.004 | 0.58 | 0.0 | 0.04 | 17.92 | 0.00 | 2.030 | 4.15 | 2.15 | 2.2 | 97.8 | 0.0 | 1.03 | 0.31 | 0.64 | 0.87 | 6.34 | 10550 | 658 | 1 | 0 | 0 | 193 | 5183 | logfile |
✔ | 8EA0 | 27970 | 2023-11-13 | 2022-08-27 | 2.56 | 2.05 | 2.66 | 1.9 | 0.003 | 0.55 | 0.0 | 0.04 | 12.24 | 0.00 | 2.237 | 8.88 | 0.00 | 4.3 | 95.7 | 0.0 | -0.24 | 0.72 | 0.77 | 2.21 | 1.9 | 0.003 | 0.56 | 0.0 | 0.04 | 15.18 | 0.00 | 2.051 | 8.02 | 0.84 | 5.3 | 94.7 | 0.0 | 1.64 | 0.46 | 0.74 | 0.80 | 3.17 | 2286 | 285 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7UZQ | 26916 | 2023-11-17 | 2022-05-09 | 2.17 | 2.05 | 2.16 | 2.1 | 0.006 | 0.92 | 0.0 | 0.05 | 16.21 | 0.01 | 2.215 | 4.59 | 2.27 | 1.8 | 98.0 | 0.2 | 2.16 | 0.68 | 0.87 | 5.59 | 2.1 | 0.004 | 0.62 | 0.0 | 0.04 | 16.14 | 0.00 | 2.133 | 5.32 | 1.89 | 2.0 | 97.9 | 0.1 | 1.79 | 0.24 | 0.69 | 0.88 | 5.85 | 20617 | 1315 | 10 | 0 | 4 | 235 | 10214 | logfile |
✔ | 6WZG | 21972 | 2023-11-14 | 2020-05-13 | 2.3 | 2.06 | 2.21 | 2.3 | 0.012 | 1.56 | 18.0 | 0.12 | 14.02 | 0.01 | 2.270 | 4.92 | 1.65 | 2.0 | 98.0 | 0.0 | 0.81 | 0.66 | 0.71 | 4.83 | 2.3 | 0.004 | 0.62 | 0.0 | 0.04 | 16.41 | 0.00 | 2.112 | 6.07 | 1.54 | 1.9 | 98.1 | 0.0 | 1.42 | 0.99 | 0.73 | 0.87 | 5.09 | 8939 | 1165 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZL1 | 14774 | 2023-11-19 | 2022-04-13 | 2.5 | 2.06 | 2.45 | 2.4 | 0.007 | 0.88 | 0.0 | 0.06 | 14.64 | 0.01 | 2.033 | 2.59 | 0.65 | 5.7 | 93.3 | 1.0 | -0.02 | 0.73 | 0.86 | 6.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27257 | 1720 | 24 | 0 | 8 | 379 | 13574 | logfile |
✔ | 6YBQ | 10771 | 2023-11-21 | 2020-03-17 | 1.96 | 2.06 | — | 2.0 | 0.039 | 1.58 | 0.0 | 0.05 | 15.05 | 0.01 | 1.550 | 5.79 | 0.00 | 2.7 | 97.3 | 0.0 | -1.94 | 0.82 | 0.87 | 6.46 | 2.0 | 0.002 | 0.62 | 0.0 | 0.04 | 15.77 | 0.00 | 2.159 | 6.34 | 0.26 | 1.9 | 98.1 | 0.0 | 0.44 | 0.47 | 0.84 | 0.89 | 5.76 | 34092 | 4289 | 36 | 0 | 12 | 871 | 0 | logfile |
✔ | 8P2S | 17373 | 2023-11-14 | 2023-05-16 | 2.4 | 2.06 | 2.43 | 1.8 | 0.003 | 0.54 | 0.0 | 0.04 | 12.82 | 0.00 | 2.120 | 8.76 | 3.01 | 4.7 | 95.2 | 0.1 | 0.29 | 0.79 | 0.75 | 4.06 | 1.8 | 0.004 | 0.64 | 0.0 | 0.04 | 16.38 | 0.00 | 2.090 | 13.16 | 1.17 | 5.8 | 94.1 | 0.2 | 0.46 | 0.52 | 0.80 | 0.79 | 3.73 | 9694 | 1201 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8GVK | 32099 | 2023-11-13 | 2022-09-15 | 2.2 | 2.06 | 2.20 | 2.2 | 0.006 | 1.29 | 0.0 | 0.06 | 15.35 | 0.00 | 2.057 | 5.53 | 4.07 | 3.4 | 94.0 | 2.6 | -1.54 | 0.65 | 0.80 | 5.76 | 2.1 | 0.003 | 0.77 | 0.0 | 0.04 | 15.42 | 0.00 | 2.211 | 9.90 | 2.62 | 4.3 | 94.9 | 0.9 | -0.94 | 0.88 | 0.74 | 0.85 | 6.36 | 3567 | 476 | 8 | 0 | 0 | 19 | 0 | logfile |