Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X3T	22032	2023-04-24	2020-05-21	2.55	2.18	2.60	2.5	0.005	0.66	0.0	0.05	13.21	0.00	2.171	6.00	2.28	3.0	97.0	0.0	-0.78	0.73	0.82	4.33	2.5	0.004	0.62	0.0	0.04	15.86	0.00	2.144	6.89	3.03	2.7	97.3	0.0	0.90	0.38	0.77	0.85	4.10	17415	2121	18	0	27	0	0	logfile
✔	8DBE	27281	2023-04-23	2022-06-14	2.1	2.18	2.26	2.2	0.014	0.99	0.0	0.05	17.66	0.05	1.867	9.20	3.05	4.1	95.9	0.0	0.97	0.73	0.90	6.43	2.2	0.003	1.76	0.0	0.05	17.32	0.00	1.850	6.81	1.87	2.7	97.3	0.0	0.27	0.34	0.74	0.91	6.36	14982	1896	18	0	30	42	0	logfile
✔	6LXV	30007	2023-04-20	2020-02-12	2.1	2.18	—	2.2	0.025	1.66	0.0	0.12	16.07	0.01	2.196	2.01	2.81	3.9	95.9	0.1	-1.79	0.78	0.91	6.69	2.2	0.002	0.57	0.0	0.04	16.46	0.00	2.149	4.16	0.92	2.3	97.7	0.0	1.03	0.92	0.79	0.91	6.13	54924	6448	24	0	16	2967	0	logfile
✔	7SC8	25029	2023-04-20	2021-09-27	2.1	2.19	2.13	1.9	0.008	1.12	10.0	0.07	15.00	0.01	2.102	5.20	0.38	1.0	99.0	0.0	2.13	0.82	0.79	4.35	1.9	0.004	0.57	0.0	0.04	16.48	0.00	2.130	8.45	0.93	1.1	98.9	0.0	2.82	0.36	0.86	0.87	4.19	56784	6836	116	0	54	2672	0	logfile
✔	7L1R	23116	2023-04-26	2020-12-15	3.1	2.19	—	2.1	0.011	1.76	28.0	0.11	14.03	0.01	1.965	4.03	3.32	3.3	96.7	0.0	-0.59	0.65	0.71	2.77	2.0	0.004	0.71	0.0	0.05	18.14	0.01	1.835	9.94	1.02	3.3	96.7	0.0	0.09	0.76	0.78	0.80	2.32	24199	3118	13	0	12	0	0	logfile
✔	7XSP	33430	2023-04-22	2022-05-15	2.89	2.19	2.82	2.1	0.006	0.85	0.0	0.06	17.25	0.01	2.303	3.41	3.42	5.6	94.2	0.2	-2.85	0.80	0.81	3.27	2.1	0.004	0.64	0.0	0.04	18.46	0.01	2.173	5.69	2.61	5.3	94.6	0.1	-0.06	0.53	0.82	0.84	3.08	11317	1271	4	50	4	0	0	logfile
✔	7VUH	32128	2023-04-21	2021-11-02	3.22	2.19	—	1.9	0.004	0.66	0.0	0.04	13.59	0.00	2.099	13.73	0.00	6.2	93.8	0.0	-1.87	0.71	0.69	2.81	1.4	0.005	0.70	0.0	0.04	15.83	0.00	2.031	14.94	0.11	6.0	94.0	0.0	-1.28	0.38	0.72	0.73	2.42	8302	1042	5	0	1	0	0	logfile
✔	6X19	21993	2023-04-22	2020-05-18	2.1	2.20	2.11	2.1	0.009	1.29	6.0	0.08	14.30	0.01	2.134	12.92	1.01	2.7	97.3	0.1	-1.61	0.73	0.84	4.93	2.2	0.003	0.75	0.0	0.04	16.80	0.00	2.132	6.29	1.47	2.0	98.0	0.0	1.19	1.01	0.72	0.88	4.53	10277	1258	9	0	1	136	0	logfile
✔	7XSR	33432	2023-04-24	2022-05-15	2.97	2.20	2.91	2.0	0.007	0.97	0.0	0.07	17.32	0.01	2.268	3.17	3.94	5.7	94.2	0.1	-2.57	0.80	0.79	2.87	1.9	0.003	0.62	0.0	0.04	18.51	0.00	2.168	6.39	3.19	5.3	94.7	0.1	0.11	0.56	0.80	0.82	2.69	16907	1963	5	49	4	0	0	logfile
✔	7SRR	25402	2023-04-21	2021-11-08	2.9	2.20	—	2.0	0.005	0.67	0.0	0.05	12.52	0.00	2.196	3.95	0.12	3.4	96.6	0.0	0.15	0.80	0.78	3.23	2.0	0.003	0.56	0.0	0.04	15.03	0.00	2.189	4.32	1.41	3.2	96.8	0.0	0.79	0.32	0.82	0.82	2.78	8394	1119	5	0	1	0	0	logfile
✔	7F2o	31429	2023-04-21	2021-06-11	2.9	2.20	—	2.1	0.003	0.57	0.0	0.04	12.79	0.01	2.194	5.71	0.41	3.2	96.8	0.0	-0.75	0.70	0.68	3.19	2.0	0.003	0.69	0.0	0.04	15.84	0.00	2.017	14.10	2.55	2.4	97.6	0.0	0.77	0.66	0.75	0.77	2.54	9004	1150	6	0	0	0	0	logfile
✔	7JZ6	22530	2023-04-25	2020-09-01	2.53	2.20	—	2.2	0.009	1.04	8.0	0.11	19.13	0.01	1.219	8.05	11.17	7.8	92.2	0.0	-3.03	0.58	0.65	2.78	2.2	0.003	0.62	0.0	0.04	19.08	0.00	2.177	5.78	5.84	2.8	97.2	0.0	0.25	1.59	0.57	0.66	2.47	20842	2646	12	0	4	18	0	logfile
✔	7VNY	32047	2023-04-26	2021-10-12	2.79	2.20	—	2.6	0.020	3.95	0.0	0.04	18.57	0.01	2.042	10.90	0.68	2.0	98.0	0.0	1.66	0.47	0.75	4.24	2.6	0.006	1.13	0.0	0.04	18.45	0.01	2.001	8.56	2.21	2.3	97.7	0.0	1.67	1.13	0.61	0.84	3.78	22472	2283	64	0	76	0	0	logfile
✔	7QA8	13880	2023-04-20	2021-11-16	2.7	2.20	2.66	2.7	0.009	1.11	0.0	0.06	14.61	0.01	2.323	1.73	0.75	3.3	96.7	0.0	-2.98	0.59	0.79	2.15	2.5	0.002	0.61	0.0	0.03	16.34	0.00	2.228	4.64	3.55	3.3	96.7	0.0	2.93	0.41	0.59	0.80	2.30	6111	622	11	0	38	70	0	logfile
✔	7S8N	24898	2023-04-20	2021-09-18	2.9	2.20	2.92	2.1	0.012	0.90	0.0	0.06	13.04	0.01	2.202	4.10	0.00	5.1	94.9	0.0	-0.33	0.79	0.80	3.96	2.1	0.004	0.60	0.0	0.04	15.91	0.00	2.215	3.02	1.47	3.2	96.8	0.0	0.80	1.01	0.82	0.83	2.92	8154	1090	6	0	1	0	0	logfile
✔	7VUG	32127	2023-04-21	2021-11-02	3.2	2.20	—	2.0	0.004	0.61	0.0	0.04	13.57	0.00	2.099	11.94	0.00	6.3	93.7	0.0	-0.75	0.73	0.72	2.48	2.0	0.004	0.64	0.0	0.04	15.83	0.00	1.991	13.01	0.20	5.5	94.5	0.0	-0.68	0.34	0.73	0.74	2.08	8924	1127	6	0	1	0	0	logfile
✔	8DBG	27283	2023-04-23	2022-06-14	2.2	2.20	2.25	2.2	0.007	0.69	0.0	0.05	15.18	0.00	1.958	4.92	1.97	3.4	96.6	0.0	0.54	0.71	0.86	6.29	2.2	0.002	0.48	0.0	0.05	16.08	0.00	1.996	5.40	2.23	3.3	96.7	0.0	1.17	0.31	0.74	0.90	5.48	14442	1854	18	0	30	12	0	logfile
✔	7W8G	32355	2023-04-22	2021-12-07	2.52	2.20	—	2.5	0.004	0.77	0.0	0.05	13.85	0.01	2.042	5.41	0.04	2.3	97.7	0.0	-0.29	0.72	0.75	2.86	2.5	0.003	0.59	0.0	0.04	16.95	0.00	1.884	8.05	2.29	2.2	97.8	0.0	0.73	0.53	0.75	0.80	2.78	62460	7876	24	0	34	0	0	logfile
✔	7WP9	32679	2023-04-27	2022-01-23	2.56	2.20	—	1.9	0.004	0.78	1.0	0.05	14.32	0.01	2.294	4.05	0.40	4.9	95.0	0.1	-4.01	0.71	0.72	2.33	2.0	0.005	0.66	0.0	0.05	16.46	0.00	2.108	9.33	2.25	5.2	94.8	0.0	-1.50	1.01	0.76	0.81	2.44	25077	3141	13	0	28	0	0	logfile
✔	7EZM	31389	2023-04-21	2021-06-01	2.9	2.20	—	2.0	0.011	1.07	1.0	0.07	13.16	0.01	2.228	4.78	0.94	3.8	96.2	0.0	-0.87	0.76	0.76	3.60	2.0	0.003	0.64	0.0	0.04	16.19	0.00	2.114	10.06	2.51	2.3	97.7	0.0	0.47	0.62	0.78	0.80	2.89	9008	1171	6	0	0	0	0	logfile

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