Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DZS	27807	2023-08-10	2022-08-08	2.65	2.07	2.73	2.0	0.006	0.78	0.0	0.05	13.39	0.01	2.253	5.63	0.12	4.2	95.8	0.0	-1.00	0.77	0.75	3.73	1.9	0.003	0.57	0.0	0.04	15.82	0.00	2.141	8.91	1.53	4.0	96.0	0.0	-0.10	0.94	0.79	0.79	3.25	8245	1100	6	0	1	0	0	logfile
✔	8PHo	17669	2023-08-21	2023-06-20	2.34	2.07	2.33	2.2	0.005	0.77	0.0	0.06	13.64	0.01	2.128	1.78	0.00	1.0	99.0	0.0	-0.02	0.73	0.85	3.99	2.2	0.002	0.50	0.0	0.04	16.96	0.00	2.202	2.96	0.78	0.4	99.6	0.0	1.21	0.50	0.72	0.85	4.41	32172	3804	12	0	0	720	0	logfile
✔	8CSX	26974	2023-08-11	2022-05-13	2.4	2.08	2.44	2.1	0.006	0.79	1.0	0.05	13.62	0.01	2.208	4.92	3.86	1.7	98.2	0.1	1.76	0.69	0.88	5.16	2.1	0.005	0.66	0.0	0.04	15.77	0.01	2.040	6.47	2.04	1.8	98.2	0.0	1.86	0.36	0.69	0.88	4.84	9116	1158	8	0	4	150	0	logfile
✔	8D37	27155	2023-08-14	2022-05-31	2.65	2.08	2.72	1.8	0.003	0.52	0.0	0.04	12.52	0.00	1.962	4.63	0.32	3.7	96.3	0.0	0.95	0.66	0.73	1.85	1.7	0.003	0.70	0.0	0.04	18.24	0.00	2.139	11.10	3.36	3.1	96.9	0.0	0.70	1.11	0.67	0.74	1.64	15314	1784	6	48	2	0	0	logfile
✔	8FUZ	29482	2023-08-18	2023-01-18	2.1	2.08	2.21	2.1	0.007	0.86	0.0	0.05	17.81	0.01	2.232	4.59	1.17	2.1	97.9	0.0	0.92	0.78	0.91	5.73	2.1	0.003	0.56	0.0	0.04	17.79	0.00	2.228	3.17	1.53	1.6	98.4	0.0	0.75	0.34	0.77	0.91	5.53	24008	3120	16	0	16	0	0	logfile
✔	8DWG	27753	2023-08-10	2022-08-01	2.71	2.08	2.72	1.8	0.006	0.64	0.0	0.05	12.61	0.00	2.106	6.68	0.00	4.5	95.5	0.0	-1.14	0.78	0.81	4.92	1.8	0.005	0.63	0.0	0.04	15.14	0.00	2.082	6.68	1.52	5.0	95.0	0.0	0.71	0.32	0.80	0.84	3.67	8350	1101	7	0	1	0	0	logfile
✔	7S8L	24896	2023-08-10	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	1.6	0.003	0.61	0.0	0.04	15.52	0.00	2.231	3.14	1.70	3.2	96.8	0.0	1.39	0.34	0.84	0.84	3.79	8177	1096	6	0	0	0	0	logfile
✔	7TYo	26190	2023-08-11	2022-02-14	2.7	2.09	2.60	2.4	0.002	0.47	0.0	0.04	12.83	0.00	2.176	5.50	1.37	2.0	98.0	0.0	-3.13	0.54	0.74	3.81	2.7	0.004	0.66	0.0	0.04	16.35	0.00	2.094	8.42	2.11	2.6	97.4	0.0	0.54	1.06	0.55	0.76	3.39	9052	1141	6	0	4	0	0	logfile
✔	8E9Z	27969	2023-08-10	2022-08-27	2.69	2.09	2.64	1.9	0.004	0.80	2.0	0.05	15.12	0.01	2.248	9.60	0.34	3.2	96.8	0.0	-1.79	0.79	0.79	2.55	1.9	0.003	0.57	0.0	0.04	16.07	0.00	1.969	7.33	1.49	3.2	96.8	0.0	0.95	0.35	0.79	0.80	3.01	8566	1129	6	0	2	0	0	logfile
✔	7LF0	23296	2023-08-23	2021-01-15	3.68	2.09	3.76	3.7	0.008	1.10	0.0	0.06	10.18	0.01	2.157	7.39	1.09	11.4	87.8	0.8	-4.41	0.51	0.54	1.30	3.6	0.008	1.03	0.0	0.06	14.91	0.01	2.015	24.18	0.91	13.7	86.0	0.3	-3.04	0.99	0.52	0.56	1.25	34548	4542	18	0	0	0	0	logfile
✔	7RH9	24458	2023-08-13	2021-07-16	2.61	2.09	—	2.5	0.003	0.57	0.0	0.04	13.27	0.01	2.214	5.79	0.00	1.3	98.7	0.0	1.30	0.64	0.84	4.07	2.5	0.002	0.48	0.0	0.04	15.63	0.00	2.149	8.70	0.81	1.2	98.8	0.0	2.64	0.90	0.63	0.86	4.00	14680	1792	4	0	0	0	0	logfile
✔	8E2E	27833	2023-08-19	2022-08-15	1.98	2.09	2.04	2.1	0.007	0.74	0.0	0.04	14.15	0.01	2.114	9.86	1.48	3.7	96.3	0.0	-0.81	0.69	0.86	6.40	2.1	0.004	0.60	0.0	0.04	14.44	0.00	2.034	8.11	1.48	1.4	98.6	0.0	2.35	0.31	0.69	0.86	6.30	26633	1654	4	0	0	377	13332	logfile
✔	8DZP	27804	2023-08-10	2022-08-08	2.71	2.09	2.70	1.9	0.019	0.72	0.0	0.10	13.82	0.01	2.216	5.26	0.11	3.6	96.4	0.0	-0.46	0.78	0.78	3.63	1.9	0.004	0.63	0.0	0.04	15.60	0.00	2.114	8.35	0.96	4.1	95.9	0.0	0.52	0.33	0.80	0.82	3.38	8657	1120	6	0	1	0	0	logfile
✔	7S3H	24823	2023-08-11	2021-09-06	2.5	2.10	2.54	1.7	0.009	1.08	0.0	0.05	16.86	0.01	2.234	3.77	0.11	3.7	96.3	0.0	-1.50	0.75	0.71	1.79	1.7	0.003	0.64	0.0	0.04	18.76	0.00	2.130	12.44	1.96	2.8	97.2	0.0	-0.10	0.74	0.78	0.76	1.99	9966	1030	4	75	1	0	0	logfile
✔	7XW9	33494	2023-08-11	2022-05-26	2.7	2.10	2.82	1.8	0.005	0.69	0.0	0.05	12.26	0.01	2.167	6.26	0.00	3.5	96.5	0.0	0.37	0.78	0.77	3.77	1.8	0.003	0.58	0.0	0.04	15.18	0.00	2.179	7.09	2.45	3.9	96.1	0.0	1.10	0.36	0.79	0.80	3.50	8988	1143	6	0	1	0	0	logfile
✔	7QKY	14057	2023-08-09	2021-12-19	1.86	2.10	1.91	2.0	0.011	1.75	3.0	0.09	12.76	0.01	2.522	1.04	0.61	4.7	95.3	0.0	-3.08	0.33	0.75	8.32	2.0	0.004	0.74	0.0	0.05	16.56	0.00	2.028	5.37	0.61	6.2	93.8	0.0	-3.22	1.00	0.39	0.84	7.47	5760	396	6	0	0	0	2862	logfile
✔	8ooR	17026	2023-08-20	2023-04-05	2.87	2.10	2.97	2.7	0.011	0.96	0.0	0.06	13.93	0.01	1.914	2.74	0.00	2.7	97.3	0.0	-0.86	0.89	0.88	4.12	2.7	0.003	0.63	0.0	0.04	16.56	0.00	2.047	6.84	1.19	1.9	98.1	0.0	0.90	1.38	0.90	0.88	2.81	28371	3626	17	0	8	0	0	logfile
✔	6UUS	20901	2023-08-11	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.50	3.27	2.8	97.2	0.0	-2.25	0.57	0.73	3.22	2.3	0.003	0.58	0.0	0.04	17.74	0.00	2.183	9.20	1.84	3.6	96.4	0.0	0.64	1.01	0.63	0.78	3.41	9308	1190	7	0	0	0	0	logfile
✔	8E9X	27967	2023-08-10	2022-08-27	2.7	2.10	2.72	1.9	0.004	0.60	0.0	0.04	12.62	0.00	2.200	6.28	0.00	4.2	95.8	0.0	-0.15	0.78	0.79	3.99	1.9	0.004	0.56	0.0	0.04	15.26	0.00	2.233	7.19	1.61	3.8	96.2	0.0	0.55	0.34	0.80	0.82	3.68	8380	1109	6	0	1	0	0	logfile
✔	7SQ8	25379	2023-08-13	2021-11-04	2.598	2.10	—	2.5	0.004	0.55	0.0	0.04	13.37	0.00	2.199	3.68	0.00	3.3	96.7	0.0	1.93	0.64	0.86	4.26	2.5	0.003	0.52	0.0	0.04	15.53	0.00	2.225	4.23	1.39	2.7	97.3	0.0	2.27	0.38	0.64	0.88	4.02	15117	1852	13	0	9	8	0	logfile

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