Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZH6	14725	2023-08-09	2022-04-05	3.67	4.10	0.95	4.2	0.006	0.90	0.0	0.06	16.13	0.01	1.607	26.36	1.26	6.4	93.6	0.0	0.99	0.54	0.73	1.36	4.2	0.003	0.73	0.0	0.04	16.88	0.00	2.217	14.09	0.00	6.0	94.0	0.0	0.95	1.12	0.54	0.74	1.24	3771	478	1	0	1	0	0	logfile
✔	8J5A	35984	2023-08-23	2023-04-21	1.19	1.12	1.22	1.2	0.014	1.48	0.0	0.08	13.93	0.01	1.560	8.49	3.21	0.6	99.4	0.0	3.37	0.51	0.66	8.67	1.2	0.003	0.57	0.0	0.03	14.11	0.00	1.975	14.59	2.56	1.8	98.2	0.0	5.37	0.22	0.69	0.82	8.60	56208	4128	24	0	24	3384	17040	logfile
✔	7YAT	33719	2023-08-09	2022-06-28	2.2	2.33	1.39	2.3	0.009	1.06	0.0	0.06	14.84	0.00	2.267	9.86	0.00	4.3	95.7	0.0	-4.79	0.61	0.88	7.98	2.3	0.003	0.81	0.0	0.05	15.27	0.01	2.285	11.34	0.00	4.5	95.5	0.0	-4.89	0.41	0.64	0.91	7.20	4129	600	45	0	0	25	0	logfile
✔	7UUZ	26807	2023-08-09	2022-04-29	3.2	3.25	1.51	3.2	0.006	0.57	0.0	0.04	13.36	0.00	2.186	5.97	0.51	5.9	94.1	0.0	1.14	0.62	0.78	2.69	3.2	0.004	0.65	0.0	0.04	15.14	0.00	2.210	10.00	0.25	5.5	94.5	0.0	1.03	1.12	0.60	0.79	2.16	3786	501	1	0	3	0	0	logfile
✔	8BDZ	15995	2023-08-09	2022-10-20	3.13	3.37	1.52	3.1	0.002	0.52	0.0	0.04	12.41	0.00	2.264	6.23	0.00	3.0	97.0	0.0	2.26	0.48	0.84	2.77	3.1	0.004	0.58	0.0	0.04	14.08	0.00	2.208	9.58	0.27	1.7	98.3	0.0	3.07	0.44	0.49	0.86	2.82	3309	414	3	0	0	0	0	logfile
✔	7PY2	13708	2023-08-09	2021-10-08	2.59	2.64	1.54	2.7	0.015	1.83	0.0	0.08	17.26	0.01	2.423	1.71	2.00	9.1	90.9	0.0	-5.22	0.45	0.84	6.05	2.8	0.006	0.92	0.0	0.05	18.12	0.00	2.134	2.20	2.50	5.2	94.8	0.0	-3.96	1.38	0.49	0.88	5.69	2152	316	4	0	0	0	0	logfile
✔	8BER	16009	2023-08-09	2022-10-21	4.0	4.97	1.55	3.9	0.003	0.61	0.0	0.04	12.68	0.00	2.214	12.92	0.00	4.0	96.0	0.0	2.47	0.55	0.79	—	3.8	0.003	0.65	0.0	0.04	14.34	0.00	2.180	13.84	0.55	5.2	94.8	0.0	2.91	1.18	0.54	0.81	—	3309	414	3	0	0	0	0	logfile
✔	6Z9F	11122	2023-08-20	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.74	48.0	0.10	15.51	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.003	0.63	0.0	0.04	14.99	0.00	2.122	4.64	3.05	1.8	98.2	0.0	4.60	0.98	0.85	0.86	8.43	41020	4152	72	0	32	4172	0	logfile
✔	8ACB	15345	2023-08-09	2022-07-05	2.6	2.88	1.65	2.9	0.004	0.71	0.0	0.08	13.94	0.00	2.257	7.47	0.00	7.8	92.2	0.0	-0.81	0.21	0.81	4.10	2.9	0.002	0.55	0.0	0.04	17.52	0.00	2.192	6.89	1.70	7.8	92.2	0.0	-0.42	1.25	0.20	0.83	3.65	1815	220	2	5	0	0	0	logfile
✔	7UUR	26801	2023-08-13	2022-04-28	1.67	1.76	1.67	1.8	0.061	2.45	3.0	0.98	14.57	0.01	1.674	7.19	0.44	2.5	97.2	0.2	-0.89	0.76	0.87	7.87	1.8	0.007	2.49	0.0	0.07	14.70	0.01	1.611	10.87	0.29	2.1	97.9	0.0	0.19	0.27	0.77	0.88	7.79	13683	1668	12	0	18	603	0	logfile
✔	7Xo3	33335	2023-08-09	2022-04-30	2.6	2.32	1.68	2.7	0.002	0.41	0.0	0.05	12.37	0.00	2.223	4.70	0.00	8.2	91.8	0.0	-3.31	0.45	0.81	5.78	2.7	0.003	0.56	0.0	0.05	16.32	0.00	2.293	2.44	3.03	9.8	90.2	0.0	-1.76	2.17	0.48	0.85	5.80	2598	378	6	0	0	0	0	logfile
✔	8H1T	34431	2023-08-15	2022-10-04	3.0	3.40	1.70	3.2	0.003	0.53	0.0	0.04	24.67	0.00	1.336	10.82	0.00	2.2	97.8	0.0	2.26	0.72	0.67	1.40	3.2	0.004	0.65	0.0	0.04	26.64	0.00	2.181	11.69	2.94	3.4	96.6	0.0	1.61	0.68	0.76	0.74	1.42	17365	1323	14	334	0	0	0	logfile
✔	7MXE	24072	2023-08-19	2021-05-19	3.7	3.77	1.71	3.7	0.005	0.77	0.0	0.05	11.42	0.00	1.698	4.31	0.35	3.4	96.6	0.0	-3.38	0.73	0.85	2.71	3.7	0.004	0.69	0.0	0.05	14.56	0.00	2.125	5.25	0.40	6.0	94.0	0.0	-1.34	0.61	0.76	0.90	2.76	22149	2632	51	0	128	0	0	logfile
✔	6ZN2	11309	2023-08-12	2020-07-06	4.3	2.35	1.71	4.5	0.004	0.93	0.0	0.04	15.06	0.01	2.001	21.27	6.35	4.3	95.7	0.0	-1.42	0.74	0.77	—	4.5	0.004	0.81	0.0	0.05	14.57	0.01	1.972	23.86	0.00	5.7	94.3	0.0	-1.46	1.49	0.74	0.75	—	11320	1412	12	0	8	0	0	logfile
✔	8ESM	28577	2023-08-10	2022-10-14	3.2	3.29	1.71	3.3	0.010	0.85	0.0	0.33	14.59	0.01	2.141	9.45	0.56	10.9	89.1	0.0	-2.85	0.62	0.87	3.21	3.3	0.004	0.63	0.0	0.04	16.80	0.00	2.293	7.97	0.14	8.7	91.3	0.0	0.97	1.00	0.60	0.88	2.76	6778	812	4	0	2	0	0	logfile
✔	6MST	9232	2023-08-09	2018-10-18	2.7	2.92	1.72	2.8	0.006	0.85	0.0	0.05	7.68	0.00	2.294	1.43	0.00	1.9	98.1	0.0	-4.58	0.73	0.90	7.42	2.9	0.004	0.55	0.0	0.04	15.57	0.00	2.206	6.75	0.44	2.9	97.1	0.0	-3.50	1.59	0.68	0.91	7.05	5172	648	12	0	0	0	0	logfile
✔	7YK8	33890	2023-08-09	2022-07-22	2.8	2.62	1.74	2.8	0.005	0.66	0.0	0.06	11.56	0.00	2.465	18.20	0.00	8.5	91.5	0.0	-3.55	0.46	0.82	1.92	2.8	0.005	0.74	0.0	0.05	16.89	0.00	2.356	7.06	4.49	11.5	88.5	0.0	-2.99	0.45	0.44	0.82	2.22	3108	450	12	0	0	0	0	logfile
✔	7EFC	31083	2023-08-09	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	15.03	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	1.9	0.003	0.69	0.0	0.04	14.60	0.00	1.907	5.77	0.54	2.5	97.5	0.0	0.68	0.91	0.80	0.85	5.94	4004	480	4	0	4	156	0	logfile
✔	7XJX	33236	2023-08-09	2022-04-18	2.7	2.78	1.76	2.9	0.008	0.81	0.0	0.06	12.77	0.00	2.438	12.63	0.00	16.4	83.6	0.0	-5.02	0.48	0.81	4.92	2.9	0.006	0.81	0.0	0.05	14.46	0.00	2.387	11.15	3.70	15.6	84.4	0.0	-3.69	1.14	0.45	0.81	5.25	2628	378	6	0	0	0	0	logfile
✔	6R4R	4727	2023-08-09	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.6	0.005	0.81	0.0	0.05	16.69	0.00	2.109	15.14	0.68	9.1	90.9	0.0	-4.84	3.88	0.31	0.68	3.65	4312	539	7	0	0	0	0	logfile

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