Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RTB	24680	2021-12-01	2021-08-12	2.14	2.32	2.23	2.3	0.003	0.59	0.0	0.04	14.52	0.00	2.277	5.37	0.77	1.6	98.4	0.0	-0.80	0.64	0.69	3.38	2.3	0.003	0.58	0.0	0.04	16.92	0.00	2.262	4.51	2.43	2.3	97.7	0.0	1.24	0.68	0.68	0.82	4.06	8972	1169	7	0	0	1	0	logfile
✔	6UUS	20901	2021-12-01	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.39	3.27	2.8	97.2	0.0	-2.25	0.57	0.72	3.22	2.3	0.002	0.57	0.0	0.04	17.80	0.00	2.176	9.30	2.25	2.6	97.4	0.0	0.57	1.00	0.63	0.76	3.20	9308	1190	7	0	0	0	0	logfile
✔	6XYo	10650	2021-12-01	2020-01-30	2.6	2.79	2.31	2.7	0.008	0.74	0.0	0.06	12.93	0.00	2.300	5.78	0.93	2.6	97.4	0.0	-2.90	0.46	0.89	5.98	2.7	0.005	0.56	0.0	0.05	18.01	0.00	2.263	4.36	1.48	3.2	96.8	0.0	-1.79	0.96	0.47	0.90	4.66	5490	800	10	0	0	0	0	logfile
✔	6UVA	20906	2021-12-01	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.07	0.00	2.207	6.60	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.61	0.0	0.04	18.40	0.00	2.158	8.08	3.55	4.4	95.6	0.0	0.30	1.31	0.66	0.78	2.82	9561	1199	7	0	0	0	0	logfile
✔	6QJP	4565	2021-12-01	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.003	0.70	0.0	0.05	12.40	0.00	2.347	10.42	0.00	1.1	98.9	0.0	-3.47	1.59	0.32	0.72	4.10	816	105	3	0	0	0	0	logfile
✔	6SDZ	10150	2021-12-01	2019-07-29	2.97	3.77	2.35	3.5	0.009	1.13	0.0	0.08	12.17	0.01	2.263	27.39	0.12	5.5	94.5	0.0	-3.05	0.89	0.88	3.72	3.4	0.006	1.17	0.0	0.06	15.87	0.01	2.216	29.23	2.80	7.0	93.0	0.0	-3.26	1.94	0.85	0.85	3.88	7909	1012	11	0	0	0	0	logfile
✔	7P6C	13225	2021-12-01	2021-07-15	2.5	2.04	2.40	2.2	0.005	0.80	0.0	0.06	15.34	0.00	2.284	2.77	0.43	2.8	97.2	0.0	-3.05	0.43	0.86	7.56	2.2	0.005	0.72	0.0	0.05	17.16	0.00	2.203	5.95	0.86	3.5	96.5	0.0	-2.59	0.96	0.44	0.89	7.28	8120	1080	10	0	0	0	0	logfile
✔	7M3N	23658	2021-12-01	2021-03-18	2.4	2.15	2.40	1.9	0.005	0.63	0.0	0.04	15.95	0.00	2.168	5.79	4.28	4.3	95.6	0.1	-2.53	0.43	0.82	4.98	1.9	0.005	0.62	0.0	0.05	16.99	0.00	2.273	7.75	3.06	4.5	95.3	0.1	-0.64	0.46	0.45	0.85	4.62	6004	759	3	0	0	0	0	logfile
✔	7Ki0	22882	2021-12-01	2020-10-22	2.5	2.66	2.41	2.6	0.007	0.86	0.0	0.06	13.88	0.00	2.218	7.79	0.10	3.0	97.0	0.0	-0.60	0.66	0.85	4.49	2.6	0.002	0.51	0.0	0.04	16.25	0.00	2.177	4.42	1.33	2.1	97.9	0.0	1.42	1.00	0.68	0.89	4.00	9242	1143	12	0	1	79	0	logfile
✔	7Ki1	22883	2021-12-02	2020-10-22	2.5	2.57	2.46	2.6	0.008	0.94	0.0	0.06	15.56	0.00	2.257	8.41	0.28	3.5	96.5	0.0	-1.64	0.64	0.81	3.96	2.6	0.004	0.60	0.0	0.04	16.89	0.00	2.100	5.92	2.03	2.4	97.6	0.0	0.92	0.50	0.66	0.85	3.64	10265	1285	11	0	1	73	0	logfile
✔	7S8L	24896	2021-12-01	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	2.0	0.003	0.62	0.0	0.04	15.55	0.01	2.252	3.20	1.34	3.5	96.5	0.0	1.25	0.35	0.84	0.84	3.95	8177	1096	6	0	0	0	0	logfile
✘	7NKZ	12451	2021-12-01	2021-02-19	2.5	2.68	2.48	2.6	0.006	0.73	1.0	0.04	13.30	0.00	1.216	11.51	0.63	1.1	98.9	0.0	0.48	0.70	0.88	4.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6424	792	4	0	5	42	0	logfile
✔	7AAP	11692	2021-12-01	2020-09-04	2.5	2.71	2.48	2.8	0.006	0.53	0.0	0.04	12.44	0.00	2.097	3.69	0.20	1.5	98.5	0.0	0.59	0.79	0.87	4.74	2.7	0.003	0.52	0.0	0.04	14.63	0.00	2.181	5.75	0.81	2.0	98.0	0.0	0.43	0.82	0.80	0.90	4.36	9446	1120	9	21	7	0	0	logfile
✔	7MBY	23750	2021-12-01	2021-04-01	2.44	3.24	2.49	3.1	0.006	0.93	1.0	0.06	12.36	0.01	2.280	4.92	0.00	1.7	98.3	0.0	-1.45	0.58	0.68	2.19	3.1	0.003	0.80	0.0	0.04	15.83	0.00	2.113	17.31	2.50	2.8	97.2	0.0	0.05	1.04	0.58	0.70	1.76	6881	891	6	0	2	0	0	logfile
✔	7M05	23609	2021-12-01	2021-03-10	2.39	2.66	2.49	2.6	0.013	1.00	0.0	0.06	14.78	0.01	2.064	3.66	0.50	6.9	92.3	0.8	-3.01	0.75	0.81	4.52	2.6	0.002	0.55	0.0	0.05	16.21	0.00	2.061	2.78	1.00	2.0	97.9	0.1	0.63	1.28	0.79	0.84	3.83	57152	3636	12	0	4	0	28188	logfile
✔	7N00	24095	2021-12-01	2021-05-24	2.27	3.74	2.49	3.3	0.004	0.55	0.0	0.05	12.23	0.00	2.138	5.26	3.44	2.9	97.1	0.0	-1.01	0.78	0.78	4.22	3.4	0.006	0.86	0.0	0.05	14.89	0.01	1.993	10.78	2.07	3.1	96.9	0.0	-0.53	1.02	0.72	0.87	3.67	5817	806	4	0	0	0	0	logfile
✔	6TJX	10514	2021-12-01	2019-11-27	3.0	3.21	2.52	3.4	0.011	1.10	0.0	0.07	9.93	0.01	2.312	4.11	0.00	4.8	95.2	0.0	-3.93	0.43	0.79	4.74	3.3	0.005	0.78	0.0	0.06	14.56	0.00	2.398	7.01	3.90	6.7	93.3	0.0	-3.36	2.48	0.39	0.80	3.89	4878	642	6	0	0	0	0	logfile
✔	6VPS	21316	2021-12-01	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.89	6.11	2.7	0.004	0.53	0.0	0.03	20.06	0.00	2.403	3.89	0.98	6.9	93.1	0.0	-3.78	1.19	0.48	0.88	6.47	2736	279	9	0	0	0	0	logfile
✔	7S8M	24897	2021-12-01	2021-09-18	2.54	2.13	2.54	2.0	0.004	0.59	0.0	0.04	12.64	0.00	2.171	6.45	0.00	4.1	95.9	0.0	0.46	0.79	0.80	4.13	2.0	0.003	0.56	0.0	0.04	15.00	0.00	2.213	6.39	1.95	4.2	95.8	0.0	1.25	0.33	0.80	0.82	3.88	8346	1102	6	0	0	0	0	logfile
✘	7CoY	30420	2021-12-01	2020-08-05	2.5	2.41	2.54	2.5	0.017	1.68	5.0	0.10	14.30	0.01	1.106	11.55	0.90	5.6	94.3	0.1	-3.23	0.57	0.80	3.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57966	6096	66	0	279	84	0	logfile

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