Table showing results for March 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SK0	10219	2021-03-20	2019-08-14	2.3	2.29	2.11	2.2	0.008	0.74	0.0	0.05	15.85	0.00	2.202	9.23	0.97	3.3	96.7	0.0	-1.30	0.70	0.83	6.89	2.2	0.006	0.74	0.0	0.05	17.20	0.00	2.132	11.20	0.81	4.5	95.5	0.0	-1.33	1.50	0.79	0.88	7.00	5826	792	3	0	0	0	0	logfile
✔	6X19	21993	2021-03-20	2020-05-18	2.1	2.20	2.11	2.1	0.009	1.48	6.0	0.08	14.12	0.01	2.134	12.47	1.01	2.7	97.3	0.1	-1.61	0.73	0.84	4.93	2.2	0.003	0.80	0.0	0.04	16.71	0.00	2.132	6.38	1.10	2.0	98.0	0.0	1.16	1.56	0.71	0.86	4.45	10277	1258	9	0	1	136	0	logfile
✘	6XZ7	10655	2021-03-28	2020-02-03	2.1	2.05	2.12	2.1	0.007	0.77	1.0	0.05	14.33	0.01	1.128	6.27	3.26	2.8	96.8	0.4	-2.20	0.41	0.69	5.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94915	3351	45	3169	179	528	0	logfile
✔	6RJU	4906	2021-03-20	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.9	0.003	0.64	0.0	0.03	13.79	0.00	2.399	3.52	0.00	7.0	93.0	0.0	-1.10	1.56	0.30	0.07	1.02	1992	131	1	0	0	0	997	logfile
✔	6QJQ	4566	2021-03-20	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.0	0.004	0.76	0.0	0.05	12.19	0.00	2.231	8.37	0.00	7.3	92.7	0.0	-3.31	2.14	0.37	0.73	2.32	1218	162	6	0	0	0	0	logfile
✔	7KJR	22898	2021-03-28	2020-10-26	2.08	2.52	2.15	2.4	0.007	0.89	0.0	0.05	17.13	0.00	2.254	7.60	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.002	0.50	0.0	0.04	16.03	0.00	2.112	9.36	0.74	2.5	97.5	0.0	1.47	0.40	0.66	0.86	4.49	3840	448	8	0	2	122	0	logfile
✘	5WP9	8874	2021-03-29	2017-08-03	4.22	4.31	2.20	5.2	0.011	1.22	0.0	0.05	9.98	0.02	1.259	2.07	0.63	5.5	93.1	1.4	-0.58	0.51	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	117048	7352	24	0	16	0	59080	logfile
✔	6WZG	21972	2021-03-20	2020-05-13	2.3	2.06	2.22	2.3	0.012	1.56	18.0	0.12	13.99	0.01	2.270	4.80	1.65	2.0	98.0	0.0	0.81	0.66	0.71	4.83	2.3	0.004	0.65	0.0	0.04	16.32	0.00	2.095	5.43	1.98	2.3	97.7	0.0	1.43	0.99	0.72	0.85	4.94	8939	1165	6	0	0	0	0	logfile
✔	6DRV	8908	2021-03-22	2018-06-13	2.2	2.30	2.26	2.3	0.017	1.45	0.0	0.08	12.56	0.02	2.116	2.95	0.23	6.8	91.1	2.1	-1.87	0.59	0.79	5.89	2.3	0.006	0.81	0.0	0.05	16.49	0.01	2.149	6.53	1.57	3.0	97.0	0.0	0.18	1.48	0.74	0.88	6.03	32888	4096	4	0	0	0	0	logfile
✔	6X8M	22094	2021-03-20	2020-06-01	2.2	2.07	2.27	2.2	0.005	0.63	0.0	0.05	13.91	0.01	2.264	5.26	0.82	3.3	96.7	0.0	-1.41	0.74	0.86	6.01	2.1	0.004	0.69	0.0	0.05	16.17	0.01	2.135	4.20	0.66	4.1	95.9	0.0	-0.03	1.62	0.76	0.87	5.85	133440	16800	60	0	0	0	0	logfile
✔	6L3T	0825	2021-03-21	2019-10-15	2.34	2.41	2.27	2.4	0.011	1.07	0.0	0.05	16.88	0.01	2.306	1.05	3.61	1.0	99.0	0.0	-3.24	0.68	0.86	4.85	2.4	0.002	0.59	0.0	0.03	16.28	0.00	1.929	2.64	1.41	0.8	99.2	0.0	2.99	3.48	0.67	0.85	4.09	19722	1206	18	0	6	204	9588	logfile
✔	6UUS	20901	2021-03-20	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.39	3.27	2.8	97.2	0.0	-2.25	0.57	0.72	3.22	2.2	0.003	0.57	0.0	0.04	17.58	0.00	2.173	8.97	1.43	2.9	97.1	0.0	0.67	1.03	0.62	0.75	3.21	9308	1190	7	0	0	0	0	logfile
✔	6UVA	20906	2021-03-20	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.07	0.00	2.207	6.60	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.62	0.0	0.04	18.36	0.00	2.165	8.55	3.17	4.4	95.6	0.0	0.32	1.32	0.65	0.77	3.02	9561	1199	7	0	0	0	0	logfile
✔	6XYo	10650	2021-03-20	2020-01-30	2.6	2.79	2.31	2.7	0.008	0.74	0.0	0.06	12.93	0.00	2.300	5.78	0.93	2.6	97.4	0.0	-2.90	0.46	0.89	5.98	2.7	0.006	0.65	0.0	0.05	13.25	0.00	2.178	4.18	0.00	3.8	96.2	0.0	-1.91	0.97	0.48	0.89	5.72	5490	800	10	0	0	0	0	logfile
✔	6PXM	20521	2021-03-22	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.61	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.44	0.0	0.03	17.53	0.00	2.185	3.29	0.09	2.0	98.0	0.0	5.27	1.48	0.77	0.88	3.99	32736	4080	24	0	0	0	0	logfile
✔	6QJP	4565	2021-03-20	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.006	0.81	0.0	0.05	12.50	0.00	2.517	9.26	0.00	6.5	93.5	0.0	-2.56	1.60	0.38	0.74	3.92	816	105	3	0	0	0	0	logfile
✔	6SDZ	10150	2021-03-20	2019-07-29	2.97	3.77	2.35	3.5	0.009	1.13	0.0	0.08	12.17	0.01	2.263	27.27	0.12	5.5	94.5	0.0	-3.05	0.89	0.88	3.72	3.5	0.007	0.87	0.0	0.06	11.81	0.00	1.960	20.75	0.00	5.9	94.1	0.0	-2.73	1.25	0.85	0.85	3.99	7909	1012	11	0	0	0	0	logfile
✔	6XLU	22251	2021-03-21	2020-06-29	2.4	2.54	2.37	2.5	0.009	1.09	0.0	0.08	14.26	0.01	2.240	1.89	0.36	6.0	93.8	0.1	-2.50	0.71	0.83	4.42	2.5	0.003	0.61	0.0	0.05	15.33	0.00	2.062	3.67	0.68	3.5	96.5	0.0	-0.37	0.92	0.71	0.82	3.84	25990	3178	24	0	62	250	0	logfile
✔	7BoJ	30130	2021-03-29	2020-03-19	2.5	2.54	2.38	2.5	0.007	0.92	0.0	0.06	12.86	0.01	2.271	3.34	0.00	2.4	97.6	0.0	-2.48	0.76	0.86	4.26	2.5	0.004	0.62	0.0	0.04	15.62	0.00	2.148	7.51	2.35	1.8	98.2	0.0	1.34	1.16	0.76	0.86	4.19	123525	16165	61	0	0	0	0	logfile
✔	6RWK	10040	2021-03-21	2019-06-05	3.86	3.95	2.39	3.9	0.007	0.76	0.0	0.05	13.64	0.00	2.183	14.27	5.83	12.2	87.8	0.0	-3.93	0.53	0.86	3.51	3.9	0.003	0.74	0.0	0.05	13.26	0.00	2.185	12.59	0.08	7.5	92.5	0.0	-1.09	0.95	0.53	0.85	3.79	21760	2688	32	0	0	0	0	logfile

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