Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6QFA	4542	2021-10-04	2019-01-09	2.49	2.59	2.43	2.6	0.005	0.75	0.0	0.06	10.73	0.01	1.973	5.30	0.00	1.8	98.2	0.0	-2.14	0.73	0.85	4.50	2.6	0.002	0.54	0.0	0.04	14.25	0.00	2.187	6.06	1.06	1.3	98.7	0.0	1.15	1.19	0.74	0.87	3.83	18755	2270	20	0	35	0	0	logfile
✔	6Fo0	4286	2021-10-04	2018-02-05	4.1	4.16	2.43	4.1	0.012	0.96	0.0	0.05	8.86	0.01	2.040	5.51	0.00	10.2	89.8	0.1	-4.55	0.72	0.79	—	4.1	0.003	0.61	0.0	0.04	12.65	0.00	1.883	10.15	0.00	6.5	93.5	0.0	-0.99	2.65	0.74	0.81	—	61356	3910	24	0	8	0	30362	logfile
✔	6SZU	10354	2021-10-04	2019-10-02	2.41	2.49	2.44	2.5	0.008	0.82	0.0	0.05	15.43	0.01	2.013	3.01	5.28	4.2	95.7	0.1	-2.10	0.71	0.88	5.00	2.5	0.003	0.58	0.0	0.04	16.95	0.00	1.882	6.56	1.78	2.3	97.7	0.0	0.62	0.49	0.72	0.90	4.62	15245	1699	14	54	8	311	0	logfile
✔	6QS6	4624	2021-10-06	2019-02-20	3.9	4.03	2.44	4.0	0.011	1.09	0.0	0.06	10.53	0.01	2.187	6.85	0.07	8.2	91.8	0.0	-4.07	0.57	0.46	0.09	3.9	0.007	0.98	0.0	0.05	16.69	0.01	1.705	20.88	0.13	5.9	94.1	0.0	-0.57	1.75	0.76	0.80	1.03	28557	3568	13	0	35	0	0	logfile
✔	7LMY	23442	2021-10-06	2021-02-06	2.4	3.32	2.45	2.9	0.007	0.89	0.0	0.04	14.40	0.01	1.987	8.12	1.89	2.7	97.3	0.0	0.96	0.80	0.76	3.08	3.0	0.004	0.52	0.0	0.04	14.63	0.00	1.969	7.36	0.55	2.5	97.5	0.0	1.71	1.61	0.86	0.85	2.87	35646	4470	12	0	30	0	0	logfile
✔	7Ki1	22883	2021-10-03	2020-10-22	2.5	2.57	2.46	2.6	0.008	0.94	0.0	0.06	15.56	0.00	2.257	8.06	0.28	3.5	96.5	0.0	-1.64	0.64	0.81	3.96	2.6	0.005	0.61	0.0	0.04	16.82	0.00	2.138	5.77	1.48	2.1	97.9	0.0	1.00	0.53	0.65	0.84	3.76	10265	1285	11	0	1	73	0	logfile
✔	6UDJ	20739	2021-10-05	2019-09-19	2.5	2.60	2.46	2.6	0.010	1.02	0.0	0.06	13.38	0.01	2.252	3.07	0.41	4.1	95.8	0.1	-1.93	0.71	0.85	4.78	2.6	0.003	0.63	0.0	0.04	15.48	0.00	2.026	6.41	2.48	3.4	96.6	0.0	-0.01	0.44	0.71	0.86	4.35	26592	3090	30	0	177	45	0	logfile
✔	6YSi	10898	2021-10-06	2020-04-22	2.5	2.64	2.46	2.6	0.014	0.90	0.0	0.06	15.44	0.01	1.839	5.87	5.75	4.5	95.4	0.1	-2.34	0.83	0.88	3.75	2.6	0.005	0.68	0.0	0.04	15.54	0.01	1.606	6.92	3.56	4.0	96.0	0.0	-1.02	1.08	0.83	0.89	3.71	83855	3112	35	2800	166	0	0	logfile
✔	7DPT	30810	2021-10-04	2020-12-21	2.48	2.64	2.47	2.7	0.009	0.84	0.0	0.05	18.08	0.00	1.445	3.04	1.23	6.0	93.9	0.2	-3.03	0.70	0.80	4.52	2.7	0.003	0.63	0.0	0.04	18.80	0.00	2.094	6.01	2.06	3.5	96.3	0.2	0.17	1.14	0.72	0.81	3.68	18052	2228	12	0	24	96	0	logfile
✔	7AAP	11692	2021-10-03	2020-09-04	2.5	2.71	2.48	2.8	0.006	0.53	0.0	0.04	12.44	0.00	2.097	3.69	0.20	1.5	98.5	0.0	0.59	0.79	0.87	4.74	2.7	0.004	0.55	0.0	0.04	14.74	0.00	2.170	5.69	1.21	2.2	97.8	0.0	0.46	0.83	0.81	0.90	4.50	9446	1120	9	21	7	0	0	logfile
✔	6L3U	0826	2021-10-04	2019-10-15	2.53	2.59	2.48	2.6	0.012	0.93	0.0	0.05	17.70	0.01	2.206	0.45	3.01	1.9	98.1	0.0	-2.86	0.64	0.84	4.02	2.6	0.002	0.51	0.0	0.03	16.87	0.00	1.979	2.09	1.51	0.5	99.5	0.0	2.74	0.94	0.64	0.85	3.01	19698	1206	18	0	12	174	9588	logfile
✔	6YNX	10859	2021-10-07	2020-04-14	2.5	2.72	2.48	2.6	0.035	1.30	0.0	0.29	13.84	0.01	1.374	3.40	0.30	2.3	97.7	0.0	-2.86	0.73	0.89	5.87	2.6	0.004	0.75	0.0	0.04	16.02	0.00	1.297	7.33	0.57	3.1	96.9	0.0	1.20	1.05	0.74	0.90	4.89	134171	7929	64	0	50	0	64331	logfile
✘	7NKZ	12451	2021-10-03	2021-02-19	2.5	2.68	2.48	2.6	0.003	0.65	1.0	0.04	12.91	0.00	1.162	11.51	0.63	1.1	98.9	0.0	0.48	0.70	0.88	4.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6424	792	4	0	5	42	0	logfile
✔	7M05	23609	2021-10-03	2021-03-10	2.39	2.66	2.49	2.6	0.013	1.00	0.0	0.06	14.78	0.01	2.064	3.55	0.50	6.9	92.3	0.8	-3.01	0.75	0.81	4.52	2.6	0.003	0.57	0.0	0.05	16.34	0.00	2.057	2.45	1.00	2.8	97.1	0.1	0.48	1.29	0.80	0.84	3.91	57152	3636	12	0	4	0	28188	logfile
✔	7JLW	22382	2021-10-07	2020-07-30	2.5	2.52	2.49	2.5	0.009	1.04	0.0	0.07	15.06	0.00	2.377	3.99	1.14	1.1	98.9	0.0	0.51	0.62	0.82	4.64	2.5	0.003	0.46	0.0	0.04	15.78	0.00	2.043	6.11	1.23	0.7	99.3	0.0	3.04	1.00	0.66	0.85	4.10	40284	2316	36	0	132	204	18720	logfile
✔	7MBY	23750	2021-10-03	2021-04-01	2.44	3.24	2.49	3.1	0.015	1.26	1.0	0.16	12.85	0.01	2.280	4.92	0.00	1.7	98.3	0.0	-1.45	0.58	0.68	2.19	3.1	0.004	0.80	0.0	0.04	15.50	0.00	2.137	18.35	1.67	4.0	96.0	0.0	0.53	1.24	0.60	0.72	1.37	6881	891	6	0	2	0	0	logfile
✔	7NVU	12613	2021-10-07	2021-03-16	2.5	2.73	2.50	2.7	0.003	0.45	0.0	0.04	15.43	0.00	1.889	3.84	0.00	2.6	97.4	0.0	1.41	0.78	0.83	3.63	2.7	0.003	0.57	0.0	0.04	17.94	0.00	2.005	8.83	1.11	2.4	97.6	0.0	0.94	0.59	0.77	0.84	3.17	44240	5295	30	90	11	0	0	logfile
✔	6LMT	0919	2021-10-04	2019-12-26	2.66	2.77	2.50	2.7	0.047	3.27	0.0	0.53	17.46	0.01	2.409	4.14	0.00	2.4	97.6	0.0	-4.48	0.52	0.74	5.03	2.7	0.003	0.86	0.0	0.05	16.50	0.00	2.331	21.28	1.17	2.0	98.0	0.0	2.39	0.62	0.72	0.88	3.32	17552	2032	16	0	32	0	0	logfile
✔	6X1A	21994	2021-10-03	2020-05-18	2.5	1.99	2.50	2.6	0.006	1.07	0.0	0.15	15.90	0.00	2.140	14.01	3.79	3.9	96.1	0.0	-3.15	0.51	0.71	2.96	2.5	0.017	1.31	1.0	0.04	17.45	0.01	2.071	9.36	3.60	2.9	97.1	0.0	-0.19	1.02	0.53	0.73	2.70	10140	1262	5	0	1	23	0	logfile
✔	7M5E	23674	2021-10-05	2021-03-23	2.5	2.97	2.51	2.9	0.017	1.43	3.0	0.10	11.29	0.01	2.433	1.11	0.20	1.8	98.1	0.1	0.59	0.78	0.82	5.49	2.9	0.004	0.75	3.0	0.04	14.49	0.00	2.149	5.76	1.29	1.8	98.2	0.0	0.48	0.53	0.70	0.82	4.52	28566	3477	36	0	135	0	0	logfile

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