Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T0W	25583	2022-12-19	2021-11-30	3.0	3.06	2.12	3.3	0.007	0.75	0.0	0.05	12.94	0.01	1.447	11.11	0.32	5.9	94.1	0.0	-1.01	0.67	0.79	3.94	3.3	0.003	0.56	0.0	0.04	14.75	0.00	2.006	8.71	1.01	4.4	95.6	0.0	-0.16	0.58	0.65	0.79	3.79	34395	2139	16	0	24	0	16968	logfile
✔	6XZ7	10655	2022-12-17	2020-02-03	2.1	2.05	2.12	2.1	0.010	0.81	1.0	0.05	14.53	0.03	1.564	6.42	3.26	2.8	96.8	0.4	-2.20	0.41	0.69	5.50	2.1	0.004	0.75	0.0	0.04	14.76	0.01	1.301	5.96	2.37	2.3	97.5	0.1	0.29	0.92	0.72	0.90	5.25	94915	3351	45	3169	179	528	0	logfile
✔	8A2R	15104	2022-12-13	2022-06-06	2.17	2.31	2.13	2.2	0.005	0.67	0.0	0.04	13.67	0.00	1.880	2.75	0.65	2.5	97.5	0.0	-1.52	0.72	0.86	5.94	2.2	0.003	0.61	0.0	0.04	16.77	0.00	1.903	3.02	0.90	1.7	98.3	0.0	1.18	1.16	0.73	0.90	5.74	14990	1830	15	0	15	480	0	logfile
✔	8D1L	27134	2022-12-13	2022-05-27	2.12	2.70	2.13	2.6	0.005	0.94	0.0	0.04	17.56	0.00	2.222	4.22	1.18	1.6	98.4	0.0	1.75	0.72	0.89	4.78	2.6	0.003	0.53	0.0	0.04	16.70	0.00	2.260	5.47	0.94	1.6	98.4	0.0	1.82	1.70	0.63	0.87	4.36	16306	1880	10	0	46	0	0	logfile
✔	7QK1	14028	2022-12-11	2021-12-17	3.03	3.20	2.13	3.2	0.011	1.97	2.0	0.11	12.98	0.01	2.502	0.14	0.00	5.5	94.5	0.0	-1.61	0.48	0.84	4.10	3.2	0.006	0.81	0.0	0.05	16.34	0.00	2.070	6.83	1.01	4.1	95.9	0.0	-1.96	3.39	0.42	0.84	4.26	3444	450	6	0	0	0	0	logfile
✔	7TYF	26178	2022-12-12	2022-02-13	2.2	2.16	2.13	2.2	0.004	0.57	0.0	0.04	14.43	0.00	2.234	5.27	0.87	1.8	98.2	0.0	-1.73	0.64	0.82	5.12	2.2	0.003	0.60	0.0	0.04	16.06	0.00	2.182	6.69	1.16	2.2	97.8	0.0	0.67	0.50	0.67	0.86	4.69	10331	1266	12	0	16	83	0	logfile
✔	7SC8	25029	2022-12-12	2021-09-27	2.1	2.19	2.13	1.9	0.008	1.12	10.0	0.07	15.00	0.01	2.102	5.31	0.38	1.0	99.0	0.0	2.13	0.82	0.79	4.35	1.9	0.005	0.58	0.0	0.04	16.44	0.00	2.142	8.47	0.98	1.2	98.8	0.0	2.80	0.36	0.86	0.87	4.18	56784	6836	116	0	54	2672	0	logfile
✘	7ZYY	15028	2022-12-18	2022-05-25	2.12	2.40	2.14	2.1	0.007	0.89	0.0	0.05	17.24	0.00	2.008	4.54	1.19	2.4	97.6	0.0	-0.65	0.91	0.89	4.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33924	4224	12	0	28	324	0	logfile
✔	6RJU	4906	2022-12-11	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	7P6B	13224	2022-12-11	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.006	0.70	0.0	0.05	17.13	0.00	2.107	8.18	0.65	4.7	95.3	0.0	-2.26	0.86	0.49	0.88	6.83	4060	540	5	0	0	0	0	logfile
✔	6QJQ	4566	2022-12-11	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.1	0.004	0.79	0.0	0.05	14.26	0.00	2.261	10.37	0.00	6.0	94.0	0.0	-2.92	1.26	0.38	0.75	1.88	1218	162	6	0	0	0	0	logfile
✔	7o6E	12738	2022-12-19	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.61	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.46	0.0	0.03	18.16	0.00	2.221	3.78	0.29	0.5	99.5	0.0	4.53	0.29	0.88	0.89	5.11	35304	4248	48	0	0	1392	0	logfile
✔	7SCA	25031	2022-12-11	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	15.33	0.01	2.057	5.53	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.002	0.54	0.0	0.04	16.62	0.00	2.126	8.47	0.98	0.9	99.1	0.0	2.90	1.09	0.79	0.85	5.23	55437	6836	116	0	54	1325	0	logfile
✔	7KJR	22898	2022-12-11	2020-10-26	2.08	2.52	2.15	2.4	0.006	0.84	0.0	0.05	16.31	0.00	2.254	8.14	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.003	0.52	0.0	0.04	16.17	0.00	2.108	10.44	0.74	2.3	97.7	0.0	1.38	0.39	0.62	0.85	4.62	3840	448	8	0	2	122	0	logfile
✔	8A2U	15107	2022-12-13	2022-06-06	2.21	2.31	2.16	2.3	0.004	0.63	0.0	0.04	13.27	0.00	2.173	2.75	0.65	2.5	97.5	0.0	-1.41	0.72	0.86	6.31	2.3	0.003	0.61	0.0	0.04	16.69	0.00	2.129	4.17	0.45	1.2	98.8	0.0	1.04	1.06	0.73	0.88	5.95	15022	1830	15	0	15	512	0	logfile
✔	8DQX	27663	2022-12-21	2022-07-20	2.1	2.94	2.16	2.7	0.008	0.68	0.0	0.04	17.17	0.00	1.878	5.03	1.26	2.0	98.0	0.0	1.11	0.79	0.75	4.56	2.7	0.004	0.54	0.0	0.04	16.98	0.00	1.713	4.30	1.04	1.3	98.7	0.0	1.86	0.65	0.80	0.89	4.52	43173	2598	26	27	8	866	21143	logfile
✔	8DQW	27662	2022-12-21	2022-07-20	2.1	2.86	2.16	2.6	0.007	0.55	0.0	0.04	17.92	0.00	1.761	3.44	0.44	1.6	98.4	0.0	2.35	0.77	0.72	3.64	2.6	0.003	0.53	0.0	0.04	17.73	0.00	1.690	4.13	1.27	1.5	98.5	0.0	2.02	2.60	0.82	0.88	4.01	46565	2802	25	36	8	429	22936	logfile
✔	7UZQ	26916	2022-12-14	2022-05-09	2.17	2.05	2.16	2.1	0.006	0.92	0.0	0.05	16.21	0.01	2.215	4.98	2.27	1.8	98.0	0.2	2.16	0.68	0.87	5.59	2.1	0.004	0.63	0.0	0.04	16.13	0.00	2.124	5.96	2.27	1.9	98.0	0.1	1.73	0.24	0.69	0.88	5.85	20617	1315	10	0	4	235	10214	logfile
✔	8A2T	15106	2022-12-13	2022-06-06	2.24	2.35	2.17	2.3	0.004	0.56	0.0	0.04	13.20	0.00	1.880	2.50	0.32	1.9	98.1	0.0	-1.62	0.71	0.87	5.89	2.3	0.004	0.62	0.0	0.05	16.33	0.00	1.886	3.86	0.45	1.1	98.9	0.0	1.02	0.81	0.74	0.90	5.35	15046	1830	15	0	10	556	0	logfile
✔	7QK6	14039	2022-12-11	2021-12-17	2.27	2.34	2.17	2.3	0.011	1.84	0.0	0.09	9.70	0.01	2.520	0.00	0.00	6.4	93.6	0.0	-1.99	0.37	0.79	7.78	2.3	0.002	0.57	0.0	0.05	15.85	0.00	2.385	4.06	0.69	5.8	94.2	0.0	-2.20	1.44	0.38	0.85	7.07	2469	162	3	0	0	0	1278	logfile

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