Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7Q4P	13812	2022-07-03	2021-11-01	2.15	2.69	2.22	2.5	0.011	1.85	41.0	0.13	17.16	0.01	1.225	3.61	1.95	2.6	97.4	0.0	-1.82	0.79	0.90	5.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13451	1535	17	45	5	241	0	logfile
✔	6WZG	21972	2022-07-03	2020-05-13	2.3	2.06	2.22	2.3	0.012	1.56	18.0	0.12	13.99	0.01	2.270	5.26	1.65	2.0	98.0	0.0	0.81	0.66	0.71	4.83	2.3	0.003	0.57	0.0	0.04	16.28	0.00	2.162	6.46	1.76	1.8	98.2	0.0	1.69	0.99	0.74	0.86	4.86	8939	1165	6	0	0	0	0	logfile
✔	7RTB	24680	2022-07-03	2021-08-12	2.14	2.32	2.23	2.3	0.003	0.57	0.0	0.04	14.48	0.00	2.277	5.54	0.77	1.6	98.4	0.0	-0.80	0.64	0.69	3.38	2.3	0.003	0.59	0.0	0.04	16.87	0.00	2.263	5.54	2.21	2.5	97.5	0.0	1.23	0.67	0.68	0.82	3.94	8972	1169	7	0	0	1	0	logfile
✔	7PK6	13466	2022-07-04	2021-08-25	2.15	2.27	2.23	2.3	0.006	0.64	0.0	0.05	17.09	0.00	1.864	4.63	2.22	2.0	98.0	0.0	1.43	0.73	0.77	4.80	2.2	0.005	0.64	0.0	0.04	17.43	0.00	1.686	7.61	2.16	2.4	97.6	0.0	1.35	0.87	0.78	0.88	5.07	120580	15100	20	0	0	0	0	logfile
✔	7oF0	12865	2022-07-06	2021-05-04	2.2	3.01	2.23	2.8	0.005	0.59	0.0	0.04	14.90	0.00	1.851	7.50	0.08	2.7	97.3	0.0	1.19	0.86	0.87	3.67	2.8	0.006	0.68	0.0	0.04	16.28	0.01	1.769	10.68	1.38	3.0	97.0	0.0	1.10	0.47	0.85	0.87	3.48	99476	8446	62	1432	64	0	0	logfile
✔	7oNJ	12996	2022-07-04	2021-05-25	2.3	2.52	2.24	2.5	0.011	0.97	0.0	0.06	18.45	0.00	2.155	8.48	0.47	0.8	99.2	0.0	-0.25	0.76	0.88	5.16	2.5	0.003	0.46	0.0	0.04	18.21	0.00	2.171	7.75	0.47	0.8	99.2	0.0	2.22	1.55	0.76	0.89	4.35	16947	1834	21	0	63	266	0	logfile
✘	7Q4o	13811	2022-07-04	2021-11-01	2.1	2.61	2.24	2.3	0.009	1.49	19.0	0.11	15.61	0.01	1.226	5.11	4.50	2.8	97.2	0.0	-0.66	0.81	0.89	4.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21212	2516	20	48	5	285	0	logfile
✔	7oE2	12859	2022-07-03	2021-05-01	2.4	3.30	2.26	2.8	0.006	0.68	0.0	0.05	17.81	0.01	2.179	3.14	2.44	2.2	97.8	0.0	0.75	0.63	0.81	5.16	2.8	0.003	0.51	0.0	0.04	18.09	0.00	2.204	3.18	1.31	2.4	97.6	0.0	1.68	0.81	0.65	0.92	4.27	10589	1375	20	0	0	154	0	logfile
✔	6DRV	8908	2022-07-06	2018-06-13	2.2	2.30	2.26	2.3	0.017	1.44	0.0	0.08	12.56	0.02	2.116	4.83	0.23	6.8	91.1	2.1	-1.87	0.59	0.79	5.89	2.3	0.003	0.66	0.0	0.04	16.32	0.00	2.148	6.62	1.08	2.7	97.3	0.0	0.31	1.48	0.74	0.89	5.98	32888	4096	4	0	0	0	0	logfile
✘	6L3T	0825	2022-07-04	2019-10-15	2.34	2.41	2.27	2.4	0.007	0.94	0.0	0.04	14.28	0.01	1.379	1.05	3.61	1.0	99.0	0.0	-3.24	0.68	0.86	4.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19722	1206	18	0	6	204	9588	logfile
✔	7LXY	23579	2022-07-06	2021-03-05	2.2	2.32	2.27	2.3	0.011	1.21	0.0	0.07	11.01	0.01	2.182	1.67	0.09	1.8	98.2	0.0	0.45	0.75	0.81	4.97	2.3	0.004	0.65	0.0	0.05	14.30	0.00	2.026	5.37	1.39	1.8	98.2	0.0	0.93	0.52	0.77	0.84	4.56	33987	4446	36	0	69	729	0	logfile
✔	6X8M	22094	2022-07-06	2020-06-01	2.2	2.07	2.27	2.2	0.005	0.63	0.0	0.05	13.91	0.01	2.264	5.48	0.82	3.3	96.7	0.0	-1.41	0.74	0.86	6.01	2.1	0.004	0.71	0.0	0.05	16.07	0.01	2.103	4.18	0.93	3.2	96.8	0.0	-0.12	0.63	0.77	0.88	5.83	133440	16800	60	0	0	0	0	logfile
✔	7VD9	31911	2022-07-04	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	8.15	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.004	0.65	0.0	0.05	17.58	0.01	2.186	8.62	2.68	4.5	95.5	0.0	-0.21	0.29	0.59	0.73	3.61	16426	1991	8	0	8	0	0	logfile
✔	7P13	13154	2022-07-04	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	1.7	0.004	0.52	0.0	0.04	17.33	0.00	2.087	15.59	1.88	2.8	97.2	0.0	4.89	0.51	0.84	0.88	3.66	13727	1743	7	0	0	0	154	logfile
✔	7S3i	24825	2022-07-03	2021-09-07	2.51	2.95	2.28	2.8	0.002	0.44	0.0	0.04	13.63	0.00	2.088	6.16	0.00	2.1	97.9	0.0	1.36	0.80	0.87	3.90	2.8	0.002	0.48	0.0	0.04	16.10	0.00	2.163	6.60	1.04	1.7	98.3	0.0	2.05	0.93	0.76	0.87	3.45	8094	1023	5	0	0	0	0	logfile
✔	7QKZ	14058	2022-07-02	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.006	1.50	0.0	0.38	19.57	0.01	2.238	12.41	0.00	1.2	98.8	0.0	-0.68	5.09	0.34	0.64	6.83	1701	99	9	0	0	0	891	logfile
✘	7ATE	11921	2022-07-03	2020-10-30	2.4	1.80	2.30	1.8	0.011	1.33	6.0	0.07	16.98	0.01	1.340	17.56	1.67	3.2	96.8	0.0	0.62	0.62	0.78	4.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9056	1098	10	0	9	145	0	logfile
✔	6UUS	20901	2022-07-03	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.71	3.27	2.8	97.2	0.0	-2.25	0.57	0.73	3.22	2.3	0.002	0.57	0.0	0.04	17.80	0.00	2.176	9.52	2.25	2.6	97.4	0.0	0.57	1.00	0.63	0.76	3.20	9308	1190	7	0	0	0	0	logfile
✔	7Q3L	13793	2022-07-04	2021-10-28	2.21	2.93	2.31	2.6	0.008	1.50	26.0	0.12	15.22	0.01	1.876	3.08	2.50	3.2	96.8	0.0	-1.25	0.81	0.86	3.75	2.6	0.003	0.67	0.0	0.04	16.14	0.00	2.021	9.35	0.99	2.3	97.7	0.0	1.19	1.51	0.79	0.87	3.45	20470	2440	16	41	4	180	0	logfile
✔	6XYo	10650	2022-07-03	2020-01-30	2.6	2.79	2.31	2.7	0.008	0.74	0.0	0.06	12.93	0.00	2.300	5.78	0.93	2.6	97.4	0.0	-2.90	0.46	0.89	5.98	2.7	0.005	0.56	0.0	0.05	18.01	0.00	2.263	4.36	1.48	3.2	96.8	0.0	-1.79	0.96	0.49	0.91	4.66	5490	800	10	0	0	0	0	logfile

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