Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7P13	13154	2022-04-05	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	1.7	0.004	0.52	0.0	0.04	17.33	0.00	2.087	15.56	1.88	2.8	97.2	0.0	4.89	0.51	0.84	0.88	3.66	13727	1743	7	0	0	0	154	logfile
✔	7VD9	31911	2022-04-05	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	7.80	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.004	0.65	0.0	0.05	17.58	0.01	2.186	8.24	2.68	4.5	95.5	0.0	-0.21	0.29	0.59	0.73	3.61	16426	1991	8	0	8	0	0	logfile
✔	7QKZ	14058	2022-04-04	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.006	1.50	0.0	0.38	19.57	0.01	2.238	12.41	0.00	1.2	98.8	0.0	-0.68	5.09	0.34	0.64	6.83	1701	99	9	0	0	0	891	logfile
✔	7S3i	24825	2022-04-04	2021-09-07	2.51	2.95	2.28	2.8	0.002	0.44	0.0	0.04	13.63	0.00	2.088	5.73	0.00	2.1	97.9	0.0	1.36	0.80	0.87	3.90	2.8	0.002	0.48	0.0	0.04	16.10	0.00	2.163	6.23	1.04	1.7	98.3	0.0	2.05	0.93	0.76	0.87	3.45	8094	1023	5	0	0	0	0	logfile
✔	6UUS	20901	2022-04-04	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.39	3.27	2.8	97.2	0.0	-2.25	0.57	0.73	3.22	2.3	0.002	0.57	0.0	0.04	17.80	0.00	2.176	9.30	2.25	2.6	97.4	0.0	0.57	1.00	0.63	0.76	3.20	9308	1190	7	0	0	0	0	logfile
✘	7ATE	11921	2022-04-04	2020-10-30	2.4	1.80	2.30	1.8	0.011	1.33	6.0	0.07	16.98	0.01	1.340	17.39	1.67	3.2	96.8	0.0	0.62	0.62	0.78	4.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9056	1098	10	0	9	145	0	logfile
✔	6XYo	10650	2022-04-04	2020-01-30	2.6	2.79	2.31	2.7	0.008	0.74	0.0	0.06	12.93	0.00	2.300	5.78	0.93	2.6	97.4	0.0	-2.90	0.46	0.89	5.98	2.7	0.005	0.56	0.0	0.05	18.01	0.00	2.263	4.36	1.48	3.2	96.8	0.0	-1.79	0.96	0.49	0.91	4.66	5490	800	10	0	0	0	0	logfile
✔	6UVA	20906	2022-04-04	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.07	0.00	2.207	6.60	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.61	0.0	0.04	18.40	0.00	2.158	8.08	3.55	4.4	95.6	0.0	0.30	1.31	0.66	0.78	2.82	9561	1199	7	0	0	0	0	logfile
✔	7BGL	12183	2022-04-07	2021-01-07	2.2	2.57	2.32	2.5	0.007	0.65	0.0	0.08	19.44	0.00	1.980	30.00	2.50	7.3	92.7	0.0	0.56	0.73	0.87	3.07	2.5	0.003	0.61	0.0	0.05	17.04	0.00	2.156	8.45	3.24	7.7	92.3	0.0	-0.14	0.93	0.74	0.90	3.10	120484	15626	104	0	52	0	0	logfile
✔	6QJP	4565	2022-04-04	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.003	0.70	0.0	0.05	12.40	0.00	2.347	10.42	0.00	1.1	98.9	0.0	-3.47	1.59	0.32	0.72	4.10	816	105	3	0	0	0	0	logfile
✔	6PXM	20521	2022-04-08	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.60	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.44	0.0	0.03	17.75	0.00	2.211	4.41	0.14	1.8	98.2	0.0	5.26	1.48	0.79	0.90	3.80	32736	4080	24	0	0	0	0	logfile
✔	7QK3	14030	2022-04-04	2021-12-17	2.44	2.73	2.35	2.7	0.010	2.07	0.0	0.11	12.55	0.01	2.519	0.00	0.00	3.4	96.6	0.0	-3.04	0.38	0.77	5.65	2.7	0.003	0.73	0.0	0.05	16.22	0.00	2.309	3.65	1.28	4.0	96.0	0.0	-2.83	1.47	0.40	0.82	5.18	2742	183	3	0	0	0	1407	logfile
✔	6SDZ	10150	2022-04-04	2019-07-29	2.97	3.77	2.35	3.5	0.009	1.13	0.0	0.08	12.17	0.01	2.263	27.39	0.12	5.5	94.5	0.0	-3.05	0.89	0.88	3.72	3.4	0.006	1.17	0.0	0.06	15.87	0.01	2.216	29.23	2.80	7.0	93.0	0.0	-3.26	1.94	0.85	0.85	3.88	7909	1012	11	0	0	0	0	logfile
✔	7P7Q	13241	2022-04-14	2021-07-20	2.4	2.95	2.36	2.3	0.004	1.18	0.0	0.06	15.34	0.01	1.700	4.72	0.76	2.6	97.3	0.0	0.28	0.89	0.91	4.22	2.3	0.006	0.67	0.0	0.04	15.12	0.01	1.665	9.17	1.79	2.7	97.3	0.0	0.69	1.49	0.90	0.93	3.93	151202	6096	115	4625	360	3601	0	logfile
✔	7oEU	12864	2022-04-05	2021-05-04	2.64	2.72	2.36	2.7	0.004	0.65	0.0	0.05	14.41	0.00	2.232	6.34	0.00	3.0	97.0	0.0	0.20	0.61	0.82	4.60	2.7	0.003	0.58	0.0	0.04	17.28	0.00	2.216	5.67	1.21	3.6	96.4	0.0	1.17	0.88	0.64	0.85	3.75	10465	1375	10	0	0	0	0	logfile
✔	7N8H	24236	2022-04-08	2021-06-14	2.3	2.39	2.37	2.4	0.012	1.25	0.0	0.08	11.01	0.01	2.409	1.69	0.00	1.7	98.3	0.0	0.64	0.73	0.78	4.69	2.4	0.007	0.79	0.0	0.05	14.41	0.01	1.885	4.62	1.23	2.7	97.3	0.0	0.55	0.97	0.74	0.79	4.88	32921	4356	36	0	60	771	0	logfile
✔	6XLU	22251	2022-04-07	2020-06-29	2.4	2.54	2.37	2.5	0.009	1.09	0.0	0.08	14.26	0.01	2.240	1.89	0.36	6.0	93.8	0.1	-2.50	0.71	0.83	4.42	2.5	0.006	0.79	0.0	0.06	15.51	0.01	1.891	4.77	0.72	5.6	94.3	0.0	-0.79	0.91	0.74	0.84	4.01	25990	3178	24	0	62	250	0	logfile
✔	7QK2	14029	2022-04-04	2021-12-17	2.61	2.61	2.37	2.7	0.011	1.86	10.0	0.11	10.81	0.01	2.499	0.15	0.00	4.1	95.9	0.0	-1.51	0.37	0.86	6.04	2.7	0.003	0.65	0.0	0.05	17.08	0.00	2.113	4.53	2.96	2.7	97.3	0.0	-1.83	1.72	0.37	0.87	5.30	3246	426	6	0	0	0	0	logfile
✔	7DD9	30650	2022-04-08	2020-10-28	2.4	2.49	2.37	2.4	0.007	0.71	0.0	0.05	15.88	0.00	1.932	8.69	1.93	7.1	92.9	0.0	-1.19	0.79	0.87	4.70	2.4	0.004	0.64	0.0	0.05	16.22	0.00	1.945	9.39	2.10	6.2	93.8	0.0	-0.98	0.22	0.80	0.88	4.84	37149	4516	12	0	12	949	0	logfile
✔	7BoJ	30130	2022-04-06	2020-03-19	2.5	2.54	2.38	2.5	0.007	0.92	0.0	0.06	12.86	0.01	2.271	3.34	0.00	2.4	97.6	0.0	-2.48	0.76	0.86	4.26	2.5	0.003	0.61	0.0	0.04	15.84	0.00	2.176	7.06	2.44	2.2	97.8	0.0	1.33	0.47	0.78	0.88	4.07	123525	16165	61	0	0	0	0	logfile

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