Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QKZ	14058	2023-02-16	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.006	1.50	0.0	0.38	19.60	0.01	2.257	11.23	0.00	1.2	98.8	0.0	-0.53	5.08	0.34	0.64	6.63	1701	99	9	0	0	0	891	logfile
✔	7VD9	31911	2023-02-22	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	7.80	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.003	0.57	0.0	0.04	17.52	0.01	2.206	7.90	2.62	3.9	96.1	0.0	0.00	0.30	0.58	0.73	3.61	16426	1991	8	0	8	0	0	logfile
✘	7P13	13154	2023-02-21	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13727	1743	7	0	0	0	154	logfile
✔	8E3X	27872	2023-02-18	2022-08-17	2.3	3.02	2.29	2.8	0.003	0.58	0.0	0.04	13.02	0.00	2.239	5.84	0.00	2.1	97.9	0.0	1.49	0.70	0.82	3.16	2.8	0.003	0.53	0.0	0.04	15.31	0.00	2.206	5.61	0.84	2.1	97.9	0.0	1.71	0.97	0.75	0.89	3.61	8979	1140	8	0	0	11	0	logfile
✔	7S3i	24825	2023-02-18	2021-09-07	2.51	2.95	2.29	2.8	0.002	0.44	0.0	0.04	13.63	0.00	2.088	5.73	0.00	2.1	97.9	0.0	1.36	0.80	0.87	3.90	2.8	0.003	0.50	0.0	0.04	16.13	0.00	2.094	5.73	1.15	1.8	98.2	0.0	1.82	0.93	0.76	0.88	3.50	8094	1023	5	0	0	0	0	logfile
✔	7SQV	25396	2023-02-17	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	2.8	0.003	0.47	0.0	0.04	16.30	0.00	2.295	1.36	1.67	1.1	98.9	0.0	1.71	1.99	0.77	0.90	3.84	4471	573	5	0	0	7	0	logfile
✔	6UUS	20901	2023-02-19	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.45	3.27	2.8	97.2	0.0	-2.25	0.57	0.73	3.22	2.3	0.003	0.58	0.0	0.04	17.74	0.00	2.183	9.20	1.84	3.6	96.4	0.0	0.64	1.01	0.63	0.78	3.41	9308	1190	7	0	0	0	0	logfile
✔	7UZU	26918	2023-02-18	2022-05-09	2.3	2.23	2.31	2.2	0.003	0.57	0.0	0.04	17.47	0.01	2.124	3.14	0.52	3.1	96.9	0.0	1.73	0.60	0.87	5.53	2.2	0.003	0.52	0.0	0.04	17.57	0.00	2.102	3.83	0.78	4.0	96.0	0.0	2.44	0.18	0.59	0.87	5.51	7399	483	4	0	0	79	3655	logfile
✔	6UVA	20906	2023-02-19	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.04	0.00	2.207	6.60	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.63	0.0	0.04	18.40	0.00	2.148	9.03	3.26	4.6	95.4	0.0	0.18	1.31	0.66	0.79	2.96	9561	1199	7	0	0	0	0	logfile
✔	8E3Y	27873	2023-02-18	2022-08-17	2.3	2.68	2.31	2.6	0.003	0.60	0.0	0.05	12.65	0.00	2.237	5.72	0.11	2.0	98.0	0.0	1.26	0.72	0.85	4.19	2.6	0.003	0.54	0.0	0.04	15.61	0.00	2.222	8.10	0.42	1.9	98.1	0.0	1.94	0.80	0.74	0.88	4.23	8966	1139	8	0	0	14	0	logfile
✔	6XYo	10650	2023-02-17	2020-01-30	2.6	2.79	2.31	2.7	0.008	0.74	0.0	0.06	12.93	0.00	2.300	5.78	0.93	2.6	97.4	0.0	-2.90	0.46	0.89	5.98	2.7	0.007	0.62	0.0	0.05	17.92	0.00	2.105	4.45	2.22	4.4	95.6	0.0	-1.84	0.96	0.48	0.91	4.74	5490	800	10	0	0	0	0	logfile
✔	6QJP	4565	2023-02-16	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.004	0.77	0.0	0.05	12.80	0.00	2.338	11.00	0.00	4.3	95.7	0.0	-3.48	1.60	0.32	0.73	4.73	816	105	3	0	0	0	0	logfile
✔	7XMU	33305	2023-02-21	2022-04-26	2.3	2.51	2.33	2.5	0.016	0.90	0.0	0.05	17.56	0.04	1.897	4.23	1.57	2.6	97.4	0.0	-0.10	0.75	0.87	4.86	2.5	0.003	1.81	0.0	0.04	17.21	0.00	1.872	4.69	0.46	2.6	97.4	0.0	0.29	1.11	0.77	0.88	4.57	15294	1842	18	0	36	822	0	logfile
✔	6SDZ	10150	2023-02-18	2019-07-29	2.97	3.77	2.34	3.5	0.009	1.13	0.0	0.08	12.17	0.01	2.263	27.39	0.12	5.5	94.5	0.0	-3.05	0.89	0.88	3.72	3.4	0.006	1.19	0.0	0.06	15.81	0.01	2.127	29.73	2.91	6.6	93.4	0.0	-3.27	1.94	0.85	0.86	3.90	7909	1012	11	0	0	0	0	logfile
✔	7R06	14220	2023-02-23	2022-02-01	2.27	2.36	2.34	2.3	0.007	0.85	6.0	0.06	20.28	0.01	2.153	12.58	5.53	1.2	98.6	0.2	0.06	0.74	0.80	4.13	2.3	0.008	0.74	0.0	0.05	19.63	0.01	2.143	7.49	3.03	1.6	98.3	0.2	0.51	0.52	0.78	0.85	4.66	31320	3588	12	66	0	0	0	logfile
✔	8B64	15862	2023-02-23	2022-09-26	2.589	2.35	2.34	2.5	0.020	4.46	0.0	0.04	20.81	0.00	1.980	8.44	1.19	0.8	99.2	0.0	3.50	0.67	0.88	4.98	2.5	0.004	1.15	0.0	0.04	19.92	0.00	1.956	7.44	1.57	1.1	98.9	0.0	2.97	0.89	0.67	0.90	4.87	21678	2249	66	0	75	0	0	logfile
✔	7UZ3	26874	2023-02-22	2022-05-08	2.35	2.21	2.35	2.2	0.005	0.80	0.0	0.08	17.05	0.01	2.063	2.87	0.84	2.2	97.8	0.0	1.74	0.62	0.87	5.34	2.2	0.003	0.53	0.0	0.04	16.55	0.00	2.107	6.11	0.63	2.2	97.8	0.0	1.87	0.28	0.63	0.87	5.22	18415	1114	10	0	20	153	9100	logfile
✔	8DCP	27327	2023-02-19	2022-06-17	2.41	2.31	2.35	2.3	0.003	0.64	0.0	0.04	20.07	0.00	2.253	7.28	3.06	4.3	95.7	0.0	0.79	0.68	0.82	3.67	2.3	0.003	0.65	0.0	0.04	20.16	0.00	2.247	9.27	3.40	4.6	95.4	0.0	0.92	0.25	0.70	0.85	3.50	10595	1281	4	0	0	21	0	logfile
✔	7QK3	14030	2023-02-16	2021-12-17	2.44	2.73	2.35	2.7	0.010	2.07	0.0	0.11	12.55	0.01	2.519	0.00	0.00	3.4	96.6	0.0	-3.04	0.38	0.77	5.65	2.7	0.003	0.72	0.0	0.05	16.27	0.00	2.309	2.92	0.64	2.8	97.2	0.0	-2.78	2.36	0.39	0.82	5.18	2742	183	3	0	0	0	1407	logfile
✔	7SSS	25413	2023-02-22	2021-11-11	2.4	2.00	2.36	2.4	0.006	0.66	0.0	0.04	14.29	0.02	2.323	3.55	0.00	2.4	97.6	0.0	0.01	0.59	0.78	4.08	2.3	0.003	0.61	0.0	0.04	17.86	0.00	2.126	10.16	2.41	3.9	96.1	0.0	2.31	0.59	0.60	0.78	3.63	12190	1416	24	0	38	170	0	logfile

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