Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7M4Z	23671	2022-05-17	2021-03-22	2.92	1.87	—	1.6	0.007	0.56	0.0	0.04	15.16	0.02	1.833	4.66	0.00	3.0	96.9	0.2	1.09	0.77	0.72	2.81	2.5	0.008	0.78	2.0	0.04	16.16	0.01	1.709	7.63	1.68	3.3	96.5	0.2	0.34	0.35	0.79	0.75	2.67	138172	5625	70	4373	190	229	0	logfile
✘	7M4U	23666	2022-05-12	2021-03-22	2.71	1.78	—	1.6	0.003	0.54	2.0	0.04	14.67	0.00	1.182	4.49	0.20	3.1	96.7	0.2	1.08	0.79	0.76	3.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	51764	2386	27	1528	84	191	0	logfile
✔	7oUF	13075	2022-05-13	2021-06-11	3.0	2.26	3.10	1.7	0.005	0.57	0.0	0.04	17.33	0.00	1.686	6.32	0.14	1.8	98.2	0.0	0.10	0.78	0.75	3.06	1.5	0.010	1.13	1.0	0.05	19.85	0.01	1.886	11.61	1.99	3.3	96.7	0.0	0.10	1.73	0.79	0.79	2.72	15094	1664	16	80	10	12	0	logfile
✔	7P13	13154	2022-05-13	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	1.7	0.004	0.52	0.0	0.04	17.33	0.00	2.087	15.59	1.88	2.8	97.2	0.0	4.89	0.51	0.84	0.88	3.66	13727	1743	7	0	0	0	154	logfile
✔	7MW6	24064	2022-05-17	2021-05-15	3.22	2.55	—	1.7	0.004	0.80	1.0	0.09	14.34	0.01	1.556	11.22	0.13	5.1	94.2	0.7	-1.15	0.80	0.77	2.91	1.8	0.007	0.79	1.0	0.05	15.64	0.01	2.070	11.61	0.24	5.7	93.7	0.6	-0.52	0.43	0.80	0.76	2.81	35247	4446	45	0	87	0	0	logfile
✔	6W6P	21562	2022-05-16	2020-03-17	2.9	2.21	—	1.7	0.010	1.07	0.0	0.06	16.55	0.01	1.989	6.51	16.52	12.1	87.6	0.3	-4.00	0.77	0.84	2.96	1.7	0.006	0.81	1.0	0.04	16.28	0.01	1.965	6.02	8.53	9.4	90.6	0.1	-1.98	1.59	0.79	0.86	2.65	133554	5058	51	4378	4	0	0	logfile
✔	7SX3	25492	2022-05-17	2021-11-22	3.1	2.52	3.30	1.7	0.004	0.66	0.0	0.08	14.47	0.01	2.199	3.25	0.00	2.8	97.2	0.0	0.09	0.73	0.81	2.40	1.8	0.005	0.70	0.0	0.05	16.20	0.00	2.144	6.25	0.34	2.6	97.4	0.0	1.71	0.44	0.74	0.84	1.89	37959	4608	6	0	85	0	0	logfile
✔	7VD8	31910	2022-05-17	2021-09-06	1.96	1.42	2.01	1.7	0.002	0.54	0.0	0.04	16.17	0.00	2.013	3.17	0.03	2.2	97.8	0.0	5.39	0.75	0.80	7.92	1.7	0.002	0.55	0.0	0.04	16.50	0.00	2.001	2.61	0.05	1.5	98.5	0.0	5.41	0.23	0.72	0.78	8.03	38201	4128	72	0	329	2472	0	logfile
✔	7S3H	24823	2022-05-13	2021-09-06	2.5	2.10	2.54	1.7	0.009	1.08	0.0	0.05	16.91	0.01	2.234	3.82	0.11	3.7	96.3	0.0	-1.50	0.75	0.71	1.79	1.7	0.010	0.83	1.0	0.04	19.08	0.00	2.094	13.21	2.50	3.6	96.4	0.0	-0.29	0.76	0.79	0.77	2.22	9966	1030	4	75	1	0	0	logfile
✔	7S8L	24896	2022-05-12	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.57	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	2.0	0.003	0.62	0.0	0.04	15.55	0.01	2.252	3.26	1.34	3.5	96.5	0.0	1.25	0.35	0.85	0.84	3.95	8177	1096	6	0	0	0	0	logfile
✔	7oUG	13076	2022-05-13	2021-06-11	3.1	2.33	3.12	1.7	0.005	0.73	0.0	0.04	17.64	0.01	1.769	5.73	0.14	2.4	97.6	0.0	0.28	0.78	0.75	2.41	1.5	0.004	0.67	0.0	0.04	19.55	0.01	1.906	10.10	0.62	2.7	97.3	0.0	-0.02	0.64	0.78	0.79	2.39	15090	1664	16	80	10	8	0	logfile
✔	7N1X	24126	2022-05-15	2021-05-28	4.0	2.34	—	1.8	0.013	1.88	13.0	0.14	14.66	0.01	1.484	10.07	1.97	8.1	91.3	0.6	-2.39	0.80	0.69	—	1.8	0.008	0.89	1.0	0.05	16.35	0.01	2.088	14.18	0.60	4.9	95.1	0.0	-1.02	1.09	0.80	0.68	—	26810	3257	35	0	95	0	0	logfile
✘	7FiJ	31599	2022-05-12	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3061	561	1	0	0	0	0	logfile
✔	7M3G	23654	2022-05-13	2021-03-18	2.5	2.29	—	1.8	0.007	0.95	14.0	0.06	16.94	0.01	2.281	2.29	0.93	3.0	97.0	0.0	-2.02	0.84	0.85	3.70	1.8	0.003	0.56	14.0	0.04	17.35	0.01	2.182	4.31	2.29	3.2	96.8	0.0	0.03	1.15	0.85	0.87	3.24	13298	1627	11	0	41	0	0	logfile
✔	7V9L	31824	2022-05-12	2021-08-26	2.6	2.13	—	1.8	0.004	0.69	0.0	0.05	13.08	0.01	2.120	4.19	0.00	3.8	96.2	0.0	0.00	0.67	0.70	3.73	1.9	0.003	0.59	0.0	0.04	15.79	0.00	2.135	10.88	1.38	2.2	97.8	0.0	0.96	0.50	0.77	0.78	2.85	8047	1019	5	0	0	0	0	logfile
✔	7TBG	25798	2022-05-15	2021-12-22	2.5	2.10	2.44	1.8	0.006	0.76	0.0	0.05	13.03	0.01	2.268	1.99	0.57	3.2	96.8	0.0	0.60	0.75	0.79	4.65	1.8	0.004	0.58	0.0	0.04	16.02	0.00	2.091	5.00	1.60	2.1	97.9	0.0	2.32	1.13	0.77	0.82	3.72	19679	1190	6	0	5	20	9858	logfile
✔	7VD9	31911	2022-05-14	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	8.15	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.004	0.65	0.0	0.05	17.58	0.01	2.186	8.62	2.68	4.5	95.5	0.0	-0.21	0.29	0.59	0.73	3.61	16426	1991	8	0	8	0	0	logfile
✘	7A5V	11657	2022-05-14	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	13.54	0.02	0.000	2.47	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21155	2275	30	0	85	1015	0	logfile
✘	7ATE	11921	2022-05-13	2020-10-30	2.4	1.80	2.30	1.8	0.011	1.33	6.0	0.07	16.98	0.01	1.340	17.56	1.67	3.2	96.8	0.0	0.62	0.62	0.78	4.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9056	1098	10	0	9	145	0	logfile
✔	7S8P	24900	2022-05-12	2021-09-18	2.6	2.11	2.62	1.8	0.024	0.85	0.0	0.18	12.77	0.00	2.183	3.24	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.9	0.004	0.80	0.0	0.12	14.88	0.01	2.152	4.45	1.24	4.6	95.4	0.0	-0.76	0.29	0.84	0.84	4.19	8093	1089	5	0	1	0	0	logfile

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