Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UWN	26837	2022-12-12	2022-05-03	3.01	2.26	3.04	1.6	0.004	0.62	0.0	0.04	16.48	0.00	2.105	14.80	2.21	6.1	93.9	0.0	-1.09	0.66	0.63	1.06	1.6	0.003	0.63	0.0	0.04	16.60	0.00	2.131	14.75	0.26	5.6	94.4	0.0	-1.01	0.33	0.66	0.63	0.88	10602	1325	12	0	11	0	0	logfile
✔	7o6E	12738	2022-12-19	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.61	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.46	0.0	0.03	18.16	0.00	2.221	3.78	0.29	0.5	99.5	0.0	4.53	0.29	0.88	0.89	5.11	35304	4248	48	0	0	1392	0	logfile
✔	6Z9F	11122	2022-12-15	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.74	48.0	0.10	15.51	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.002	0.57	0.0	0.04	15.00	0.00	2.179	5.54	3.05	1.8	98.2	0.0	4.97	0.98	0.84	0.85	8.54	41020	4152	72	0	32	4172	0	logfile
✔	7NYD	12651	2022-12-20	2021-03-22	3.27	2.40	3.23	1.6	0.013	1.84	5.0	0.10	13.96	0.02	1.536	2.21	0.66	4.8	95.2	0.0	-1.14	0.78	0.80	2.42	2.1	0.006	0.81	0.0	0.05	16.26	0.01	2.026	15.59	0.61	5.1	94.9	0.0	-0.89	0.80	0.72	0.72	1.90	38430	4940	17	0	24	0	0	logfile
✘	7M4U	23666	2022-12-19	2021-03-22	2.71	1.78	—	1.6	0.003	0.54	2.0	0.04	14.67	0.00	1.182	4.49	0.20	3.1	96.7	0.2	1.08	0.79	0.76	3.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	51764	2386	27	1528	84	191	0	logfile
✔	7SEP	25074	2022-12-11	2021-10-01	3.8	2.53	3.76	1.6	0.006	0.66	0.0	0.05	12.76	0.01	2.155	10.42	8.22	5.0	95.0	0.0	-0.19	0.72	0.72	2.36	1.5	0.004	0.73	0.0	0.05	17.10	0.01	2.163	14.39	0.83	3.5	96.5	0.0	-0.36	0.93	0.72	0.71	2.17	7641	930	2	0	0	0	0	logfile
✔	7MW6	24064	2022-12-19	2021-05-15	3.22	2.55	—	1.7	0.004	0.80	1.0	0.09	14.34	0.01	1.556	11.22	0.13	5.1	94.2	0.7	-1.15	0.80	0.77	2.91	1.7	0.004	0.70	0.0	0.05	15.55	0.01	2.124	11.64	0.27	5.7	93.8	0.6	-0.49	0.44	0.80	0.75	2.87	35247	4446	45	0	87	0	0	logfile
✔	8AG4	15415	2022-12-12	2022-07-19	2.46	2.04	2.48	1.7	0.003	0.49	0.0	0.04	13.59	0.00	2.170	5.34	0.00	3.9	96.1	0.0	0.77	0.82	0.83	4.04	1.7	0.002	0.47	0.0	0.04	15.71	0.00	2.188	6.06	1.03	3.2	96.8	0.0	0.97	0.89	0.81	0.83	3.75	11155	1384	4	0	0	0	0	logfile
✔	7S8L	24896	2022-12-11	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.57	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	2.0	0.004	0.64	0.0	0.04	15.39	0.00	2.272	3.39	1.82	3.5	96.5	0.0	1.25	0.35	0.84	0.84	3.82	8177	1096	6	0	0	0	0	logfile
✔	7S3H	24823	2022-12-12	2021-09-06	2.5	2.10	2.54	1.7	0.009	1.08	0.0	0.05	16.91	0.01	2.234	3.82	0.11	3.7	96.3	0.0	-1.50	0.75	0.71	1.79	1.7	0.003	0.64	0.0	0.04	18.78	0.00	2.138	12.03	2.29	3.1	96.9	0.0	-0.02	0.75	0.78	0.76	2.09	9966	1030	4	75	1	0	0	logfile
✔	7P13	13154	2022-12-13	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	1.6	0.003	0.49	0.0	0.03	17.22	0.00	2.102	14.62	1.08	2.6	97.4	0.0	5.07	0.51	0.83	0.87	3.72	13727	1743	7	0	0	0	154	logfile
✘	7UT8	26760	2022-12-18	2022-04-26	2.43	1.94	2.10	1.7	0.020	0.64	0.0	0.05	18.54	0.00	1.974	9.48	3.66	3.2	96.7	0.1	0.19	0.82	0.82	3.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20221	2538	18	0	13	29	0	logfile
✘	7UT9	26763	2022-12-18	2022-04-26	2.44	1.92	2.20	1.7	0.020	0.68	0.0	0.05	18.68	0.00	1.975	10.01	3.62	3.3	96.5	0.2	0.25	0.80	0.80	3.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20243	2538	18	0	13	60	0	logfile
✘	8DPN	27639	2022-12-18	2022-07-15	2.49	1.95	2.55	1.7	0.023	0.60	0.0	0.04	17.47	0.00	1.898	7.23	0.99	2.5	97.5	0.0	0.56	0.83	0.84	4.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16067	1998	12	0	8	40	0	logfile
✔	7oUG	13076	2022-12-13	2021-06-11	3.1	2.33	3.12	1.7	0.005	0.73	0.0	0.04	17.64	0.01	1.769	5.73	0.14	2.4	97.6	0.0	0.28	0.78	0.75	2.41	1.7	0.003	0.69	0.0	0.04	19.41	0.00	1.953	10.06	0.55	2.0	98.0	0.0	-0.03	0.62	0.78	0.79	2.32	15090	1664	16	80	10	8	0	logfile
✔	7oUF	13075	2022-12-13	2021-06-11	3.0	2.26	3.10	1.7	0.005	0.57	0.0	0.04	17.33	0.00	1.686	6.32	0.14	1.8	98.2	0.0	0.10	0.78	0.75	3.06	1.6	0.003	0.68	0.0	0.04	19.90	0.01	1.891	10.11	1.92	2.7	97.3	0.0	0.08	1.74	0.79	0.80	2.70	15094	1664	16	80	10	12	0	logfile
✔	7VD8	31910	2022-12-20	2021-09-06	1.96	1.42	2.01	1.7	0.002	0.54	0.0	0.04	16.17	0.00	2.013	3.17	0.03	2.2	97.8	0.0	5.39	0.75	0.80	7.92	1.7	0.002	0.55	0.0	0.04	16.50	0.00	2.001	2.61	0.05	1.5	98.5	0.0	5.41	0.23	0.74	0.80	8.03	38201	4128	72	0	329	2472	0	logfile
✔	7SX3	25492	2022-12-20	2021-11-22	3.1	2.52	3.30	1.7	0.004	0.66	0.0	0.04	14.42	0.01	2.199	3.25	0.00	2.8	97.2	0.0	0.09	0.73	0.81	2.40	1.8	0.002	0.61	0.0	0.04	16.06	0.00	2.126	5.88	0.22	2.0	98.0	0.0	1.92	0.44	0.74	0.84	1.75	37959	4608	6	0	85	0	0	logfile
✘	7ATE	11921	2022-12-18	2020-10-30	2.4	1.80	2.30	1.8	0.011	1.33	6.0	0.07	16.98	0.01	1.340	17.56	1.67	3.2	96.8	0.0	0.62	0.62	0.78	4.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9056	1098	10	0	9	145	0	logfile
✔	7Z0o	14428	2022-12-12	2022-02-23	2.8	1.99	2.70	1.8	0.004	0.66	0.0	0.04	19.63	0.00	2.189	6.24	1.42	1.7	98.3	0.0	1.08	0.68	0.73	3.27	1.7	0.004	0.59	0.0	0.04	21.16	0.00	2.152	8.87	3.02	2.1	97.9	0.0	1.78	0.48	0.77	0.79	3.25	11864	1256	10	78	0	0	0	logfile

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