Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7o6E	12738	2023-11-21	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35304	4248	48	0	0	1392	0	logfile
✔	7M4U	23666	2023-11-13	2021-03-22	2.71	1.78	—	1.6	0.006	0.58	2.0	0.04	14.94	0.02	1.771	4.42	0.20	3.1	96.7	0.2	1.08	0.79	0.76	3.70	1.6	0.004	0.72	0.0	0.04	15.88	0.01	1.748	5.68	2.51	3.4	96.5	0.2	0.80	1.73	0.82	0.81	3.58	51764	2386	27	1528	84	191	0	logfile
✔	8CPM	16783	2023-11-22	2023-03-03	1.81	1.57	1.84	1.6	0.005	0.85	0.0	0.05	15.21	0.01	1.916	7.77	0.00	1.0	99.0	0.0	2.32	0.70	0.75	7.56	1.6	0.003	0.60	0.0	0.04	16.38	0.00	2.043	7.22	0.11	2.3	97.7	0.0	4.30	0.37	0.71	0.77	7.46	36090	4152	72	0	38	1972	0	logfile
✔	7YLA	33904	2023-11-17	2022-07-25	2.52	2.04	2.52	1.6	0.006	0.71	0.0	0.04	14.58	0.01	1.980	8.85	0.75	4.3	95.5	0.3	-0.94	0.81	0.81	3.97	1.6	0.005	0.57	0.0	0.04	14.96	0.00	1.883	11.63	0.85	4.8	95.2	0.1	-0.72	1.10	0.83	0.84	3.60	125784	3775	36	2994	6	0	32052	logfile
✔	7XJG	33226	2023-11-15	2022-04-17	2.51	2.02	2.63	1.6	0.005	0.71	0.0	0.05	22.26	0.01	1.962	7.64	3.44	4.1	95.9	0.0	-0.23	0.76	0.76	2.80	1.6	0.005	0.60	0.0	0.04	21.99	0.00	2.109	7.44	4.48	4.1	95.9	0.0	0.56	0.25	0.79	0.80	2.61	13167	1066	12	216	2	0	0	logfile
✔	8CPU	16786	2023-11-21	2023-03-03	1.76	1.54	1.80	1.6	0.004	0.71	0.0	0.05	14.91	0.01	1.976	4.95	0.00	1.0	99.0	0.0	2.29	0.71	0.77	8.55	1.6	0.004	0.62	0.0	0.04	15.65	0.00	2.051	5.31	0.57	1.8	98.2	0.0	3.90	0.29	0.73	0.80	8.29	35823	4152	72	0	38	1705	0	logfile
✔	7M4X	23669	2023-11-20	2021-03-22	2.66	1.75	—	1.6	0.006	0.56	0.0	0.03	15.14	0.01	1.789	3.62	0.00	2.5	97.4	0.1	1.32	0.77	0.73	3.46	1.6	0.007	0.84	0.0	0.05	16.27	0.01	1.607	5.41	2.63	3.5	96.4	0.1	0.21	0.36	0.80	0.76	3.34	139446	5528	73	4453	194	552	0	logfile
✔	7SiM	25144	2023-11-15	2021-10-14	2.7	2.00	—	1.6	0.005	0.71	0.0	0.05	13.50	0.00	2.302	7.90	0.07	1.7	98.3	0.0	0.36	0.74	0.72	3.19	1.6	0.003	0.55	0.0	0.04	15.84	0.00	2.196	9.00	0.81	1.6	98.4	0.0	0.50	0.93	0.75	0.76	3.23	12826	1564	8	0	28	0	0	logfile
✔	8CPX	16789	2023-11-21	2023-03-03	1.76	1.61	1.78	1.6	0.005	0.80	0.0	0.06	14.97	0.01	2.063	5.37	0.00	1.0	99.0	0.0	2.18	0.75	0.81	8.02	1.7	0.002	0.52	0.0	0.04	15.88	0.00	2.212	2.81	1.31	1.8	98.2	0.0	4.58	0.39	0.78	0.85	7.90	35827	4152	72	0	38	1709	0	logfile
✔	8D33	27154	2023-11-16	2022-05-31	2.46	2.01	2.48	1.7	0.003	0.55	0.0	0.04	13.00	0.00	2.091	4.01	0.39	3.5	96.5	0.1	0.90	0.73	0.78	3.10	1.7	0.003	0.60	0.0	0.04	17.93	0.00	2.187	7.22	2.65	3.1	96.9	0.0	0.83	1.32	0.73	0.79	2.85	15272	1784	6	46	2	0	0	logfile
✔	7U9X	26409	2023-11-20	2022-03-11	2.58	2.84	—	1.7	0.003	0.61	0.0	0.04	14.15	0.00	2.080	9.25	0.11	2.3	97.7	0.0	1.30	0.87	0.83	3.55	1.7	0.003	0.64	0.0	0.04	15.20	0.00	2.114	8.19	0.25	2.9	97.1	0.0	1.66	0.41	0.88	0.87	3.93	138588	17324	12	0	12	0	0	logfile
✔	8CAM	16530	2023-11-20	2023-01-24	1.86	1.57	1.83	1.7	0.010	1.53	0.0	0.11	14.33	0.03	1.821	0.54	0.27	3.0	96.8	0.1	-1.28	0.64	0.76	6.57	1.6	0.008	1.15	0.0	0.06	14.87	0.01	1.713	7.67	1.60	2.8	97.2	0.0	-0.29	0.33	0.73	0.82	6.46	86648	2767	65	2724	322	6113	0	logfile
✘	7MW6	24064	2023-11-21	2021-05-15	3.22	2.55	—	1.7	0.005	0.84	1.0	0.09	12.90	0.01	1.556	11.05	0.13	5.1	94.2	0.7	-1.15	0.80	0.77	2.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35247	4446	45	0	87	0	0	logfile
✔	7S8L	24896	2023-11-14	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	1.6	0.003	0.61	0.0	0.04	15.52	0.00	2.231	3.14	1.70	3.2	96.8	0.0	1.39	0.34	0.84	0.84	3.79	8177	1096	6	0	0	0	0	logfile
✔	8FKX	29260	2023-11-20	2022-12-21	2.59	2.79	2.72	1.7	0.003	0.55	0.0	0.04	13.14	0.00	1.961	1.77	0.01	1.2	98.8	0.0	1.69	0.79	0.82	3.59	1.7	0.004	0.53	0.0	0.04	14.22	0.00	1.883	5.27	1.32	2.1	97.9	0.0	1.75	1.14	0.80	0.87	3.18	138643	10793	67	2472	65	0	0	logfile
✔	8HK6	34847	2023-11-20	2022-11-25	2.64	2.08	2.77	1.7	0.006	0.80	0.0	0.05	16.47	0.01	1.477	13.25	1.62	2.8	97.0	0.2	-0.80	0.79	0.82	3.37	1.7	0.004	0.65	0.0	0.04	17.28	0.00	2.190	9.58	2.54	2.9	96.9	0.2	0.74	0.46	0.79	0.83	3.14	28704	3596	8	0	24	0	0	logfile
✔	8CPW	16788	2023-11-21	2023-03-03	1.79	1.64	1.78	1.7	0.005	0.84	0.0	0.06	14.35	0.01	2.180	3.39	0.63	1.0	99.0	0.0	2.13	0.77	0.83	8.34	1.6	0.004	0.71	0.0	0.04	14.75	0.00	2.215	4.05	0.41	1.2	98.8	0.0	3.93	0.22	0.77	0.85	7.73	36004	4152	72	0	38	1886	0	logfile
✔	6W6P	21562	2023-11-18	2020-03-17	2.9	2.21	—	1.7	0.010	1.07	0.0	0.06	16.55	0.01	1.989	6.48	16.52	12.1	87.6	0.3	-4.00	0.77	0.84	2.96	1.6	0.004	0.72	0.0	0.04	16.07	0.01	1.983	5.80	7.99	8.9	91.0	0.1	-1.84	1.60	0.79	0.86	2.61	133554	5058	51	4378	4	0	0	logfile
✘	7P13	13154	2023-11-16	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13727	1743	7	0	0	0	154	logfile
✔	8CPS	16784	2023-11-21	2023-03-03	1.82	1.69	1.90	1.7	0.003	0.66	0.0	0.05	15.42	0.01	2.116	2.82	0.00	1.0	99.0	0.0	2.28	0.75	0.81	8.54	1.7	0.003	0.58	0.0	0.04	17.00	0.00	2.154	4.46	0.16	1.2	98.8	0.0	4.78	0.30	0.77	0.83	8.39	36034	4152	72	0	38	1916	0	logfile

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