Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WWU	21948	2021-06-02	2020-05-09	2.7	2.08	2.76	1.9	0.039	1.73	1.0	0.13	16.23	0.02	2.072	6.82	2.78	5.8	94.0	0.2	-3.98	0.60	0.76	4.02	1.9	0.006	0.99	0.0	0.05	17.15	0.01	1.395	13.23	1.44	5.0	95.0	0.0	-3.27	0.47	0.59	0.79	4.04	9688	1216	6	1	4	0	0	logfile
✔	6WWo	21942	2021-06-02	2020-05-09	2.8	2.07	2.79	1.9	0.038	1.74	3.0	0.13	15.95	0.02	1.958	5.92	1.99	6.1	93.5	0.3	-4.55	0.58	0.74	4.64	1.9	0.007	1.04	0.0	0.05	16.99	0.01	0.229	17.36	1.14	5.5	94.4	0.2	-3.90	1.72	0.58	0.77	4.53	9784	1230	6	1	5	0	0	logfile
✔	6WWR	21945	2021-06-02	2020-05-09	2.7	2.08	2.69	1.9	0.038	1.52	1.0	0.12	14.67	0.01	1.967	5.29	0.57	5.8	94.2	0.0	-3.62	0.60	0.77	5.00	1.9	0.007	0.98	0.0	0.05	16.63	0.01	1.786	15.34	0.67	5.1	94.9	0.0	-2.99	0.95	0.61	0.80	4.82	9719	1220	6	1	4	0	0	logfile
✔	7KoD	22972	2021-06-01	2020-11-08	1.655	2.30	—	1.9	0.001	0.35	0.0	0.03	8.49	0.00	2.288	0.78	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.51	0.0	0.04	13.87	0.00	1.855	1.87	0.08	0.9	99.1	0.0	5.18	0.59	0.87	0.93	8.00	68186	4128	48	0	0	1727	32643	logfile
✔	7K00	22586	2021-06-04	2020-09-02	1.98	1.72	—	1.9	0.007	0.97	3.0	0.05	15.24	0.02	1.588	7.33	6.32	3.9	96.0	0.1	-1.76	0.69	0.83	5.00	1.8	0.005	0.78	0.0	0.04	15.30	0.01	1.822	7.88	2.97	3.8	96.1	0.0	0.04	0.87	0.71	0.86	4.90	149338	5585	117	4555	331	7248	0	logfile
✔	6TAX	10429	2021-06-04	2019-10-31	3.2	2.63	—	1.9	0.009	1.13	0.0	0.06	11.18	0.01	2.065	5.47	0.46	9.5	90.3	0.2	-4.10	0.88	0.80	3.18	1.9	0.003	0.67	0.0	0.04	13.80	0.00	2.088	9.58	0.13	7.3	92.7	0.0	0.07	1.92	0.88	0.81	1.95	35235	4349	1	0	71	0	0	logfile
✔	6ZGL	11210	2021-06-02	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	8.33	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.004	0.63	0.0	0.04	15.87	0.00	2.106	5.97	1.12	1.2	98.8	0.0	3.10	0.38	0.76	0.83	7.24	15760	1848	24	0	0	964	0	logfile
✔	7JVR	22511	2021-06-01	2020-08-22	2.8	2.21	—	2.0	0.023	0.96	0.0	0.10	8.76	0.01	2.235	4.64	0.00	2.8	97.2	0.0	-0.85	0.74	0.74	2.70	2.1	0.004	0.85	0.0	0.04	14.49	0.00	2.218	14.71	2.98	2.6	97.4	0.0	0.56	0.67	0.75	0.77	2.66	8872	1126	6	0	1	0	0	logfile
✔	6Xi8	22191	2021-06-01	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.71	0.01	1.333	6.38	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	1.9	0.006	1.30	0.0	0.05	17.72	0.01	2.095	19.86	0.97	9.2	90.8	0.0	-2.43	1.33	0.69	0.64	0.22	5022	636	4	0	2	0	0	logfile
✔	7KUE	23036	2021-06-01	2020-11-24	3.5	2.53	3.43	2.0	0.010	1.63	3.0	0.11	15.98	0.01	2.205	5.62	0.78	8.4	91.6	0.0	-4.55	0.71	0.69	2.12	2.1	0.004	1.12	0.0	0.05	17.90	0.01	2.267	15.38	0.78	7.9	92.1	0.0	-2.18	1.05	0.72	0.71	1.32	4726	577	4	0	2	0	0	logfile
✔	6YBQ	10771	2021-06-04	2020-03-17	1.96	2.06	—	2.0	0.039	1.60	0.0	0.05	15.08	0.01	1.550	4.52	0.00	2.7	97.3	0.0	-1.94	0.82	0.87	6.46	2.0	0.003	0.67	0.0	0.05	15.94	0.00	2.181	4.78	0.41	2.6	97.4	0.0	0.29	0.96	0.84	0.89	5.90	34092	4289	36	0	12	871	0	logfile
✔	6YL3	10835	2021-06-05	2020-04-06	1.98	2.04	1.99	2.0	0.067	3.60	246.0	0.36	16.35	0.02	1.877	4.38	2.74	5.3	94.4	0.4	-2.46	0.78	0.83	6.40	2.0	0.005	0.81	0.0	0.05	16.26	0.01	1.730	5.48	1.50	4.1	95.7	0.2	-0.18	0.53	0.82	0.86	7.05	150156	9552	84	0	24	3672	73044	logfile
✘	7D1U	30548	2021-06-05	2020-09-15	2.08	1.94	2.04	2.0	0.017	1.69	27.0	0.09	18.17	0.02	1.202	3.96	3.09	2.3	97.5	0.2	-1.36	0.74	0.87	6.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52655	5312	106	0	196	2121	0	logfile
✔	6UVN	20908	2021-06-03	2019-11-03	3.1	2.62	—	2.0	0.010	0.84	1.0	0.05	14.35	0.00	2.114	18.82	0.52	8.1	91.8	0.1	-3.87	0.89	0.81	2.57	2.0	0.003	0.59	0.0	0.04	15.69	0.00	1.922	12.81	0.29	5.4	94.6	0.0	-0.96	0.51	0.90	0.82	2.08	29487	3461	14	61	83	0	0	logfile
✔	5FTK	3296	2021-06-04	2016-01-14	2.4	2.04	—	2.0	0.011	1.39	0.0	0.07	12.31	0.01	2.216	24.37	0.65	6.1	93.5	0.4	-4.37	0.44	0.66	3.22	2.0	0.004	0.86	0.0	0.05	17.54	0.01	2.102	16.32	3.33	8.2	91.7	0.1	-1.73	1.27	0.49	0.69	1.70	34374	4338	18	0	12	96	0	logfile
✔	6WWS	21946	2021-06-02	2020-05-09	2.7	2.11	2.68	2.0	0.039	1.72	8.0	0.13	16.00	0.02	2.077	8.07	3.06	6.5	93.1	0.3	-3.99	0.59	0.78	4.41	2.0	0.007	0.99	0.0	0.05	17.05	0.01	1.758	14.74	1.53	5.5	94.5	0.1	-3.06	0.45	0.59	0.81	4.56	9696	1216	6	1	4	0	0	logfile
✔	5FTJ	3295	2021-06-04	2016-01-14	2.3	2.04	—	2.0	0.010	1.31	0.0	0.18	14.93	0.01	1.862	40.24	0.81	5.7	93.3	1.0	-3.32	0.42	0.64	2.67	2.0	0.003	0.80	0.0	0.05	18.08	0.01	2.140	13.85	2.49	6.1	93.8	0.1	-0.56	1.25	0.48	0.68	1.53	34602	4338	18	0	18	120	0	logfile
✔	7LVQ	23540	2021-06-02	2021-02-26	2.9	2.12	2.86	2.0	0.044	1.76	1.0	0.14	14.98	0.01	1.920	5.31	0.66	6.4	93.5	0.1	-3.20	0.55	0.77	4.09	2.0	0.008	1.10	0.0	0.06	16.58	0.01	1.032	16.08	0.66	5.5	94.5	0.0	-2.52	0.94	0.57	0.79	4.14	9767	1226	6	1	5	0	0	logfile
✔	7LJC	23390	2021-06-01	2021-01-28	3.0	2.23	—	2.1	0.040	1.14	0.0	0.23	9.18	0.01	2.282	5.07	0.11	2.8	97.2	0.0	-1.06	0.78	0.81	3.11	2.0	0.004	0.75	0.0	0.04	14.73	0.01	2.094	14.89	2.23	2.7	97.3	0.0	0.44	1.64	0.76	0.78	3.18	8544	1040	6	0	14	0	0	logfile
✘	6XZ7	10655	2021-06-03	2020-02-03	2.1	2.05	2.12	2.1	0.007	0.77	1.0	0.05	14.33	0.01	1.128	6.27	3.26	2.8	96.8	0.4	-2.20	0.41	0.69	5.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94915	3351	45	3169	179	528	0	logfile

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