Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K00	22586	2021-09-10	2020-09-02	1.98	1.72	—	1.9	0.007	0.97	3.0	0.05	15.24	0.02	1.588	7.33	6.32	3.9	96.0	0.1	-1.76	0.69	0.83	5.00	1.8	0.004	0.68	0.0	0.04	15.10	0.01	1.867	7.81	2.95	3.5	96.5	0.0	0.42	0.87	0.70	0.86	4.88	149338	5585	117	4555	331	7248	0	logfile
✔	7M3N	23658	2021-09-02	2021-03-18	2.4	2.15	2.40	1.9	0.005	0.64	0.0	0.04	15.95	0.00	2.168	5.62	4.28	4.3	95.6	0.1	-2.53	0.43	0.82	4.98	1.9	0.005	0.64	0.0	0.05	17.03	0.01	2.269	6.98	2.75	4.4	95.5	0.1	-0.58	0.48	0.44	0.83	4.83	6004	759	3	0	0	0	0	logfile
✘	7D1T	30547	2021-09-02	2020-09-15	1.95	1.88	1.89	1.9	0.019	1.80	31.0	0.10	18.25	0.02	1.200	3.31	2.40	1.9	97.9	0.2	-0.93	0.77	0.85	6.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✘	7EFC	31083	2021-09-04	2021-03-21	1.7	1.76	1.83	1.9	0.033	3.25	80.0	0.10	14.95	0.00	0.000	2.92	2.15	2.5	96.6	0.8	-0.84	0.73	0.80	6.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✔	6TAX	10429	2021-09-05	2019-10-31	3.2	2.63	—	1.9	0.009	1.13	0.0	0.06	11.18	0.01	2.065	5.47	0.46	9.5	90.3	0.2	-4.10	0.88	0.80	3.18	1.9	0.003	0.67	0.0	0.04	13.77	0.00	2.020	9.13	0.13	7.5	92.5	0.0	0.05	1.92	0.88	0.81	1.88	35235	4349	1	0	71	0	0	logfile
✔	6S61	10101	2021-09-04	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.30	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.004	0.63	0.0	0.04	14.73	0.00	1.766	5.08	0.65	1.2	98.8	0.0	4.22	0.74	0.78	0.88	8.81	71060	4128	72	0	30	3854	32904	logfile
✔	7LD0	23278	2021-09-06	2021-01-12	3.1	2.33	3.20	1.9	0.006	0.65	0.0	0.04	13.28	0.01	2.229	8.80	0.00	6.1	93.9	0.0	-2.06	0.76	0.75	1.84	2.0	0.006	0.85	0.0	0.04	17.14	0.01	1.980	11.29	0.69	5.5	94.5	0.0	-0.64	0.62	0.77	0.77	0.90	36976	4720	8	0	0	0	0	logfile
✔	6WWU	21948	2021-09-02	2020-05-09	2.7	2.08	2.76	1.9	0.015	1.25	1.0	0.08	16.20	0.02	2.072	6.82	2.78	5.8	94.0	0.2	-3.98	0.60	0.76	4.02	2.0	0.005	0.73	0.0	0.05	17.60	0.00	2.008	7.61	2.97	4.3	95.6	0.1	-0.68	0.68	0.59	0.81	4.10	9688	1216	6	1	4	0	0	logfile
✔	7NJ1	12369	2021-09-03	2021-02-14	2.9	2.23	—	1.9	0.005	0.70	1.0	0.05	13.54	0.00	2.211	9.12	1.09	7.4	92.4	0.2	-2.39	0.75	0.73	2.14	2.0	0.007	1.02	0.0	0.04	16.73	0.01	2.133	11.64	1.18	5.8	94.1	0.1	0.91	0.58	0.76	0.75	2.03	11096	1501	2	0	0	0	0	logfile
✔	7N1U	24123	2021-09-04	2021-05-28	3.14	2.62	—	1.9	0.013	1.75	7.0	0.13	14.19	0.01	2.003	6.48	1.56	6.1	93.7	0.3	-1.65	0.83	0.80	3.13	1.9	0.004	0.77	0.0	0.05	15.86	0.01	2.124	11.51	0.28	4.0	96.0	0.0	-0.03	0.72	0.84	0.82	2.24	26619	3225	39	0	99	0	0	logfile
✔	7E9H	31032	2021-09-03	2021-03-04	4.0	2.62	—	1.9	0.003	0.48	0.0	0.04	11.36	0.00	2.202	7.98	0.06	2.9	97.1	0.0	-2.83	0.68	0.61	—	1.9	0.013	1.26	1.0	0.04	14.96	0.01	1.865	19.99	0.30	5.0	94.9	0.1	-1.15	2.04	0.71	0.66	—	16847	2309	8	0	0	0	0	logfile
✘	7EFD	31084	2021-09-04	2021-03-21	1.77	1.79	1.83	1.9	0.034	3.25	60.0	0.10	15.30	0.00	0.000	2.62	2.15	1.7	97.5	0.8	-0.54	0.71	0.78	5.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✔	6ZGL	11210	2021-09-03	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	8.33	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.55	0.0	0.04	15.71	0.00	2.114	4.82	1.06	0.7	99.3	0.0	3.63	0.75	0.75	0.82	7.01	15760	1848	24	0	0	964	0	logfile
✔	6WWo	21942	2021-09-03	2020-05-09	2.8	2.07	2.79	1.9	0.015	1.25	3.0	0.08	15.91	0.02	1.958	5.92	1.99	6.1	93.5	0.3	-4.55	0.58	0.74	4.64	2.0	0.004	0.72	0.0	0.05	17.66	0.00	1.996	8.52	2.84	3.8	96.2	0.1	-0.61	2.57	0.59	0.80	3.89	9784	1230	6	1	5	0	0	logfile
✔	6WWR	21945	2021-09-03	2020-05-09	2.7	2.08	2.69	1.9	0.014	0.94	1.0	0.07	14.67	0.01	1.967	5.29	0.57	5.8	94.2	0.0	-3.62	0.60	0.77	5.00	2.1	0.004	0.69	0.0	0.04	16.85	0.00	2.001	6.49	1.81	3.8	96.2	0.0	-0.20	1.37	0.60	0.83	3.83	9719	1220	6	1	4	0	0	logfile
✔	7KoD	22972	2021-09-04	2020-11-08	1.655	2.30	—	1.9	0.001	0.35	0.0	0.03	8.49	0.00	2.288	0.78	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	1.9	0.004	0.49	0.0	0.03	13.79	0.00	1.882	1.73	0.11	0.9	99.1	0.0	5.23	0.59	0.87	0.93	8.04	68186	4128	48	0	0	1727	32643	logfile
✔	7E9G	31031	2021-09-04	2021-03-04	3.5	2.34	—	1.9	0.006	0.52	0.0	0.06	11.69	0.01	2.229	8.11	0.00	4.0	96.0	0.0	-3.14	0.70	0.66	1.29	1.9	0.007	0.86	0.0	0.04	14.85	0.01	1.913	17.84	0.11	5.6	94.4	0.0	-1.59	0.66	0.72	0.71	1.82	18816	2557	10	0	3	0	0	logfile
✘	7D1U	30548	2021-09-07	2020-09-15	2.08	1.94	2.04	2.0	0.017	1.69	27.0	0.09	18.17	0.02	1.202	3.96	3.09	2.3	97.5	0.2	-1.36	0.74	0.87	6.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52655	5312	106	0	196	2121	0	logfile
✔	6YL3	10835	2021-09-11	2020-04-06	1.98	2.04	1.99	2.0	0.067	3.60	246.0	0.36	16.35	0.02	1.877	4.38	2.74	5.3	94.4	0.4	-2.46	0.78	0.83	6.40	2.0	0.003	0.71	0.0	0.05	16.22	0.00	1.819	5.07	1.52	3.6	96.2	0.1	0.08	0.82	0.81	0.86	6.95	150156	9552	84	0	24	3672	73044	logfile
✔	6Xi8	22191	2021-09-02	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.71	0.01	1.333	6.38	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	1.9	0.009	1.35	0.0	0.05	17.52	0.01	2.145	20.27	0.97	8.5	91.5	0.0	-2.30	1.29	0.69	0.64	0.08	5022	636	4	0	2	0	0	logfile

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