Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T9i	25758	2023-11-18	2021-12-19	2.9	2.43	—	1.9	0.005	0.91	1.0	0.05	12.76	0.01	2.016	3.30	0.62	3.6	96.4	0.0	-0.16	0.69	0.63	2.32	1.8	0.004	0.67	0.0	0.04	15.11	0.00	1.904	9.43	2.50	6.3	93.7	0.0	-0.52	1.14	0.74	0.72	2.51	23529	1532	11	0	8	0	11557	logfile
✔	8BK9	16093	2023-11-21	2022-11-08	2.1	1.91	2.07	1.9	0.003	0.61	0.0	0.04	17.00	0.00	2.222	1.87	0.49	1.2	98.8	0.0	4.72	0.69	0.87	6.31	1.9	0.005	0.68	0.0	0.04	17.12	0.00	2.246	2.77	0.38	1.8	98.2	0.0	4.48	0.18	0.69	0.88	6.63	34978	4128	54	0	6	1156	0	logfile
✔	8E9Y	27968	2023-11-14	2022-08-27	2.79	2.12	2.79	1.9	0.005	0.81	0.0	0.05	13.49	0.00	2.217	12.62	0.12	5.2	94.8	0.0	-1.06	0.76	0.75	3.19	1.9	0.004	0.63	0.0	0.04	15.81	0.00	2.202	11.11	1.62	5.2	94.8	0.1	-0.38	0.37	0.76	0.76	2.55	8479	1123	6	0	1	0	0	logfile
✔	8E9Z	27969	2023-11-14	2022-08-27	2.69	2.09	2.64	1.9	0.004	0.80	2.0	0.05	15.12	0.01	2.248	9.60	0.34	3.2	96.8	0.0	-1.79	0.79	0.79	2.55	1.9	0.003	0.57	0.0	0.04	16.07	0.00	1.969	7.33	1.49	3.2	96.8	0.0	0.95	0.35	0.79	0.80	3.01	8566	1129	6	0	2	0	0	logfile
✔	7o6Q	12740	2023-11-14	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.51	0.00	2.189	4.70	1.63	0.8	99.2	0.0	3.42	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	6ZGL	11210	2023-11-16	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.00	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.52	0.0	0.04	15.83	0.00	2.114	4.28	0.93	0.9	99.1	0.0	3.77	0.76	0.75	0.83	7.09	15760	1848	24	0	0	964	0	logfile
✔	8AG5	15416	2023-11-16	2022-07-19	3.47	2.11	—	1.9	0.003	0.49	0.0	0.04	17.82	0.00	2.194	6.46	0.26	3.8	96.2	0.0	0.35	0.75	0.75	3.20	1.9	0.002	0.51	0.0	0.04	17.77	0.00	2.178	6.94	0.45	3.7	96.3	0.0	0.53	0.87	0.76	0.78	2.90	13762	1703	4	0	0	0	0	logfile
✔	8P5U	17453	2023-11-13	2023-05-24	2.17	2.20	2.21	1.9	0.032	1.60	0.0	0.08	15.06	0.01	1.601	3.66	0.31	3.0	97.0	0.0	-1.97	0.91	0.92	5.23	1.9	0.004	0.58	0.0	0.04	17.05	0.00	1.953	4.75	0.78	2.4	97.6	0.0	0.91	0.40	0.89	0.89	4.37	52878	6714	12	0	24	0	0	logfile
✔	8F0K	28759	2023-11-15	2022-11-03	1.9	1.70	1.92	1.9	0.010	0.59	0.0	0.04	14.21	0.01	2.252	4.34	0.91	1.2	98.8	0.0	-1.70	0.50	0.67	4.75	1.9	0.004	0.68	0.0	0.04	16.58	0.00	2.187	6.72	1.09	2.1	97.9	0.0	1.33	0.64	0.58	0.73	4.97	10553	1272	12	0	18	39	0	logfile
✔	7UA1	26412	2023-11-20	2022-03-11	2.99	3.02	—	1.9	0.003	0.62	0.0	0.04	14.11	0.00	1.785	8.77	0.29	3.3	96.6	0.1	1.20	0.85	0.80	2.97	1.9	0.003	0.67	0.0	0.04	15.27	0.00	2.125	9.07	0.44	4.0	96.0	0.1	1.12	0.44	0.87	0.84	3.34	138680	17324	12	0	16	0	0	logfile
✔	8P5X	17456	2023-11-14	2023-05-24	2.29	2.20	2.36	1.9	0.013	1.76	0.0	0.09	14.15	0.00	2.250	0.66	0.21	3.1	96.9	0.0	-1.93	0.89	0.90	4.98	2.0	0.003	0.54	0.0	0.04	16.33	0.00	2.003	2.59	0.51	2.1	97.9	0.0	0.77	0.42	0.87	0.88	4.28	55346	7110	18	0	12	0	0	logfile
✔	7VZ4	32220	2023-11-15	2021-11-15	1.89	1.72	—	1.9	0.010	1.17	0.0	0.08	29.00	0.00	2.167	2.63	0.97	1.6	98.4	0.0	0.11	0.75	0.82	7.08	1.9	0.005	0.70	0.0	0.04	28.42	0.01	2.320	4.08	0.49	0.5	99.5	0.0	2.76	0.80	0.78	0.86	7.64	11843	746	10	290	0	0	0	logfile
✘	8BQV	16188	2023-11-14	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.01	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✔	8F2B	28812	2023-11-15	2022-11-07	2.0	1.79	2.02	1.9	0.011	0.55	0.0	0.04	14.19	0.00	2.278	5.13	1.32	1.0	99.0	0.0	-2.02	0.54	0.74	4.60	1.9	0.003	0.59	0.0	0.04	15.98	0.00	2.198	6.30	1.42	2.5	97.5	0.0	1.21	0.95	0.55	0.75	5.05	10360	1273	12	0	16	31	0	logfile
✔	8P6Y	17511	2023-11-13	2023-05-30	1.9	1.73	1.95	1.9	0.005	0.60	0.0	0.04	16.82	0.00	2.148	3.62	0.36	1.0	98.9	0.2	1.99	0.68	0.84	6.33	1.9	0.004	0.63	0.0	0.04	16.85	0.00	2.148	4.60	0.90	1.3	98.5	0.2	1.74	0.21	0.68	0.85	6.33	5266	630	7	0	3	158	0	logfile
✔	8P6V	17508	2023-11-13	2023-05-30	1.9	1.76	1.97	1.9	0.005	0.62	0.0	0.04	16.21	0.00	2.221	5.67	1.26	1.8	98.1	0.2	1.53	0.64	0.77	5.52	1.9	0.003	0.57	0.0	0.04	16.68	0.00	2.124	5.67	2.17	1.6	98.2	0.2	1.30	0.75	0.64	0.78	5.35	5243	630	7	0	2	138	0	logfile
✔	8DZP	27804	2023-11-14	2022-08-08	2.71	2.09	2.70	1.9	0.019	0.72	0.0	0.10	13.90	0.01	2.216	5.26	0.11	3.6	96.4	0.0	-0.46	0.78	0.78	3.63	1.8	0.005	0.67	0.0	0.05	15.74	0.00	2.112	8.53	1.39	4.6	95.4	0.0	0.40	0.33	0.80	0.82	3.75	8657	1120	6	0	1	0	0	logfile
✔	7UM5	26597	2023-11-14	2022-04-06	2.73	2.12	2.75	1.9	0.003	0.57	0.0	0.04	11.84	0.00	2.281	2.29	0.00	3.8	96.2	0.0	-0.74	0.82	0.82	4.55	1.9	0.003	0.61	0.0	0.04	14.14	0.00	2.252	3.96	1.06	4.1	95.9	0.0	0.30	0.34	0.83	0.83	3.86	8277	1104	6	0	1	1	0	logfile
✔	7VUH	32128	2023-11-14	2021-11-02	3.22	2.19	—	1.9	0.004	0.66	0.0	0.04	13.59	0.00	2.099	13.73	0.00	6.2	93.8	0.0	-1.87	0.71	0.69	2.81	1.4	0.005	0.70	0.0	0.04	15.83	0.00	2.031	14.94	0.11	6.0	94.0	0.0	-1.28	0.38	0.72	0.73	2.42	8302	1042	5	0	1	0	0	logfile
✔	8oRM	17129	2023-11-13	2023-04-14	1.9	1.83	1.88	1.9	0.004	0.58	0.0	0.04	16.77	0.00	2.236	3.99	0.90	1.6	98.2	0.2	1.88	0.70	0.81	5.96	1.9	0.005	0.69	0.0	0.05	16.78	0.01	2.187	6.14	1.08	1.5	98.4	0.2	1.36	0.18	0.70	0.83	5.92	5341	632	7	0	2	210	0	logfile

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