Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DPF	27633	2023-02-18	2022-07-15	2.84	2.18	2.90	2.0	0.004	0.77	0.0	0.07	10.32	0.00	2.093	3.46	0.12	1.8	98.2	0.0	1.40	0.78	0.77	4.38	2.0	0.004	0.65	0.0	0.04	14.15	0.00	2.155	4.34	1.46	3.2	96.8	0.0	0.70	1.02	0.80	0.80	3.07	8160	1093	6	0	2	0	0	logfile
✔	7U7N	26382	2023-02-18	2022-03-07	3.47	2.42	3.51	2.0	0.003	0.61	0.0	0.04	16.99	0.01	2.164	8.81	0.89	2.6	97.4	0.0	1.04	0.74	0.76	2.33	2.0	0.003	0.61	0.0	0.04	17.35	0.00	2.126	10.06	0.25	3.0	97.0	0.0	1.09	0.32	0.74	0.77	2.35	7284	884	10	0	16	0	0	logfile
✔	7N1V	24124	2023-02-26	2021-05-28	3.21	2.67	—	2.0	0.013	1.76	10.0	0.13	13.79	0.01	1.776	4.31	0.98	6.5	93.2	0.3	-1.63	0.82	0.80	3.43	2.1	0.007	0.79	0.0	0.05	15.87	0.00	2.088	11.82	0.87	5.5	94.5	0.0	-0.42	1.32	0.84	0.83	2.73	26947	3274	35	0	95	0	0	logfile
✔	7QKY	14057	2023-02-17	2021-12-19	1.86	2.10	1.91	2.0	0.011	1.75	3.0	0.09	12.76	0.01	2.522	1.04	0.61	4.7	95.3	0.0	-3.08	0.33	0.75	8.32	2.0	0.004	0.74	0.0	0.05	16.56	0.00	2.028	5.37	0.61	6.2	93.8	0.0	-3.22	1.00	0.39	0.84	7.47	5760	396	6	0	0	0	2862	logfile
✔	7UWJ	26833	2023-02-17	2022-05-03	3.2	2.38	3.23	2.0	0.004	0.78	1.0	0.05	12.97	0.01	2.189	11.24	0.00	4.1	95.9	0.0	-2.14	0.66	0.61	2.04	2.0	0.003	0.63	0.0	0.04	14.92	0.00	2.228	10.10	0.33	4.7	95.3	0.0	-1.88	0.44	0.67	0.64	1.81	5314	664	6	0	6	0	0	logfile
✔	7QKL	14046	2023-02-17	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.14	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.003	0.62	0.0	0.05	17.01	0.00	2.552	3.25	0.25	2.7	97.3	0.0	-1.29	2.03	0.44	0.91	7.62	3468	456	6	0	0	0	0	logfile
✔	7XT4	33439	2023-02-22	2022-05-16	3.08	2.22	2.99	2.0	0.006	0.91	1.0	0.06	17.94	0.01	2.244	4.64	3.70	5.0	94.8	0.2	-2.53	0.80	0.80	3.42	2.0	0.004	0.62	0.0	0.04	18.32	0.00	2.219	8.16	0.47	4.7	95.3	0.1	0.35	1.44	0.81	0.82	3.13	16850	1939	5	55	4	0	0	logfile
✘	7V69	31739	2023-02-19	2021-08-20	3.4	2.24	—	2.0	0.003	0.65	0.0	0.04	12.64	0.00	2.096	13.22	0.00	2.9	97.1	0.0	-2.02	0.68	0.64	2.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8539	1122	5	0	0	0	0	logfile
✔	7RZU	24778	2023-02-16	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.002	0.48	0.0	0.03	15.88	0.00	2.308	6.69	1.40	0.0	100.0	0.0	5.49	0.47	0.80	0.81	1.54	2439	324	6	0	0	0	0	logfile
✔	7SCH	25035	2023-02-19	2021-09-28	3.1	2.24	3.07	2.0	0.003	0.61	0.0	0.04	11.92	0.00	2.218	9.09	0.19	4.1	95.9	0.0	0.02	0.78	0.75	3.40	2.0	0.003	0.61	0.0	0.04	15.35	0.00	2.084	10.65	0.56	4.7	95.3	0.0	0.28	0.40	0.78	0.80	2.98	9711	1190	3	0	3	0	0	logfile
✔	6UVN	20908	2023-02-27	2019-11-03	3.1	2.62	—	2.0	0.010	0.84	1.0	0.05	14.35	0.00	2.114	19.06	0.52	8.1	91.8	0.1	-3.87	0.89	0.81	2.57	2.0	0.005	0.66	0.0	0.04	15.79	0.00	1.746	14.24	0.23	6.6	93.4	0.0	-1.26	0.48	0.90	0.82	2.32	29487	3461	14	61	83	0	0	logfile
✔	6Xi8	22191	2023-02-17	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.20	0.01	1.333	6.49	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	1.9	0.004	0.90	0.0	0.05	17.20	0.01	2.175	17.74	0.97	9.0	91.0	0.0	-2.43	1.23	0.69	0.64	0.82	5022	636	4	0	2	0	0	logfile
✔	7JVR	22511	2023-02-18	2020-08-22	2.8	2.21	—	2.0	0.012	0.93	0.0	0.05	8.66	0.01	2.235	4.70	0.00	2.8	97.2	0.0	-0.85	0.74	0.74	2.70	2.1	0.003	0.73	0.0	0.04	14.58	0.00	2.052	14.20	2.88	2.5	97.5	0.0	0.57	0.66	0.75	0.77	2.68	8872	1126	6	0	1	0	0	logfile
✔	7KUE	23036	2023-02-17	2020-11-24	3.5	2.53	3.43	2.0	0.010	1.62	3.0	0.11	15.46	0.01	2.205	5.62	0.78	8.4	91.6	0.0	-4.55	0.71	0.69	2.12	2.1	0.003	0.76	0.0	0.05	17.07	0.01	2.229	12.94	0.97	8.0	92.0	0.0	-2.24	1.31	0.72	0.71	1.71	4726	577	4	0	2	0	0	logfile
✔	7VUG	32127	2023-02-19	2021-11-02	3.2	2.20	—	2.0	0.004	0.61	0.0	0.04	13.57	0.00	2.099	11.88	0.00	6.3	93.7	0.0	-0.75	0.73	0.72	2.48	2.0	0.004	0.64	0.0	0.04	15.83	0.00	1.991	12.95	0.20	5.5	94.5	0.0	-0.68	0.34	0.73	0.74	2.08	8924	1127	6	0	1	0	0	logfile
✘	7SCJ	25036	2023-02-19	2021-09-28	3.4	2.31	2.97	2.0	0.004	0.58	0.0	0.05	11.19	0.01	2.200	9.22	0.00	5.7	94.3	0.0	-0.25	0.75	0.72	3.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9336	1131	6	2	7	0	0	logfile
✔	7L1Q	23115	2023-02-24	2020-12-15	3.4	2.29	—	2.0	0.008	1.29	6.0	0.07	14.92	0.01	1.807	2.68	2.54	3.7	96.1	0.2	-0.80	0.72	0.67	1.56	1.7	0.003	0.80	0.0	0.05	17.82	0.01	1.889	15.87	0.82	3.4	96.5	0.0	-0.23	1.90	0.73	0.73	1.36	24204	3118	13	0	13	0	0	logfile
✔	7N1W	24125	2023-02-25	2021-05-28	3.33	2.63	—	2.0	0.013	1.77	17.0	0.12	13.88	0.01	1.951	6.11	0.81	6.0	93.5	0.5	-1.65	0.82	0.79	3.10	1.9	0.004	0.73	0.0	0.05	15.89	0.00	2.008	11.72	0.49	4.9	95.1	0.0	-0.15	1.57	0.84	0.82	2.35	26810	3257	35	0	95	0	0	logfile
✔	7EQ1	31254	2023-02-18	2021-04-28	3.3	2.26	—	2.0	0.003	0.58	0.0	0.04	13.83	0.00	2.113	10.24	0.00	6.5	93.5	0.0	-0.59	0.75	0.74	3.06	2.0	0.003	0.60	0.0	0.04	15.98	0.00	2.091	10.91	0.41	6.0	94.0	0.0	-0.11	0.31	0.75	0.77	2.68	8999	1150	5	0	0	0	0	logfile
✔	7WY0	32883	2023-02-18	2022-02-15	2.83	2.21	—	2.0	0.007	0.87	0.0	0.06	11.98	0.00	1.690	7.73	0.00	6.2	93.8	0.0	-1.00	0.74	0.73	3.63	2.0	0.004	0.68	0.0	0.04	15.36	0.00	2.124	12.48	1.97	5.3	94.7	0.0	0.15	0.47	0.75	0.75	2.68	8723	1112	5	0	0	0	0	logfile

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