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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5JXL | 8179 | 2024-03-15 | 2016-05-13 | 3.5 | 3.48 | — | 3.6 | 0.008 | 1.39 | 0.0 | 0.06 | 9.65 | 0.00 | 1.795 | 18.18 | 0.15 | 8.7 | 89.0 | 2.2 | -2.06 | 0.30 | 0.77 | 1.70 | 3.5 | 0.004 | 0.79 | 0.0 | 0.05 | 15.97 | 0.00 | 2.116 | 13.37 | 5.70 | 7.6 | 92.1 | 0.4 | -1.65 | 1.50 | 0.30 | 0.83 | 2.03 | 69993 | 9361 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 5JZH | 8185 | 2024-03-19 | 2016-05-16 | 3.9 | 4.02 | — | 4.0 | 0.015 | 2.15 | 0.0 | 0.08 | 10.55 | 0.02 | 1.650 | 4.16 | 0.00 | 9.4 | 87.9 | 2.7 | -1.57 | 0.81 | 0.81 | 2.71 | 4.0 | 0.004 | 0.65 | 0.0 | 0.05 | 14.38 | 0.01 | 1.835 | 8.65 | 2.05 | 8.5 | 91.5 | 0.0 | -1.33 | 0.93 | 0.78 | 0.84 | 1.90 | 90790 | 5936 | 14 | 0 | 0 | 0 | 44226 | logfile |
✔ | 5JZW | 8188 | 2024-03-18 | 2016-05-17 | 4.46 | 4.55 | — | 4.5 | 0.015 | 1.85 | 0.0 | 0.09 | 10.60 | 0.02 | 1.421 | 10.14 | 0.00 | 10.6 | 83.4 | 5.9 | -2.90 | 0.71 | 0.72 | — | 4.5 | 0.003 | 0.69 | 0.0 | 0.04 | 12.80 | 0.01 | 1.983 | 11.92 | 0.00 | 10.6 | 88.6 | 0.8 | -1.65 | 1.22 | 0.74 | 0.78 | — | 83419 | 5474 | 14 | 0 | 0 | 0 | 40509 | logfile |
✔ | 5K10 | 8192 | 2024-03-15 | 2016-05-17 | 3.8 | 4.74 | — | 3.8 | 0.009 | 0.93 | 0.0 | 0.06 | 12.22 | 0.02 | 2.138 | 33.42 | 0.30 | 6.9 | 92.6 | 0.5 | -4.07 | 0.80 | 0.57 | 0.98 | 3.8 | 0.004 | 0.83 | 0.0 | 0.04 | 16.11 | 0.00 | 2.188 | 25.81 | 2.57 | 3.7 | 96.0 | 0.3 | -0.37 | 1.89 | 0.92 | 0.86 | 0.79 | 6338 | 794 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 5K12 | 8194 | 2024-03-16 | 2016-05-17 | 1.8 | 2.40 | — | 2.8 | 0.008 | 0.97 | 0.0 | 0.06 | 10.27 | 0.01 | 2.051 | 19.79 | 0.82 | 3.8 | 96.2 | 0.0 | -2.53 | 0.66 | 0.74 | 5.80 | 2.8 | 0.004 | 0.58 | 0.0 | 0.04 | 15.60 | 0.01 | 2.082 | 10.13 | 0.68 | 1.9 | 98.1 | 0.0 | 1.95 | 0.87 | 0.72 | 0.89 | 3.67 | 14856 | 1764 | 12 | 0 | 0 | 1086 | 0 | logfile |
✔ | 5K0Z | 8191 | 2024-03-14 | 2016-05-17 | 2.8 | 4.15 | — | 2.8 | 0.011 | 1.04 | 0.0 | 0.06 | 10.64 | 0.01 | 2.056 | 18.30 | 0.00 | 2.9 | 97.1 | 0.0 | -4.11 | 0.73 | 0.58 | 1.27 | 3.3 | 0.005 | 1.13 | 0.0 | 0.06 | 16.78 | 0.01 | 2.101 | 31.33 | 3.82 | 3.9 | 96.1 | 0.0 | -0.26 | 1.62 | 0.86 | 0.83 | 0.77 | 9749 | 1268 | 8 | 0 | 0 | 41 | 0 | logfile |
✔ | 5K11 | 8193 | 2024-03-15 | 2016-05-17 | 3.8 | 4.50 | — | 3.8 | 0.012 | 1.23 | 0.0 | 0.06 | 12.12 | 0.01 | 2.061 | 29.53 | 0.30 | 6.1 | 93.4 | 0.5 | -4.89 | 0.80 | 0.59 | 1.53 | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 15.80 | 0.00 | 2.110 | 26.12 | 2.11 | 5.4 | 94.6 | 0.0 | -0.24 | 1.56 | 0.90 | 0.85 | 1.22 | 6338 | 794 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 5L3P | 4001 | 2024-03-26 | 2016-05-24 | 3.7 | 4.66 | — | 16.0 | 0.006 | 0.60 | 0.0 | 0.19 | 22.20 | 0.02 | 2.115 | 7.18 | 0.00 | 8.2 | 89.4 | 2.4 | -1.95 | 0.44 | 0.11 | 0.16 | 3.9 | 0.005 | 0.99 | 2.0 | 0.04 | 24.17 | 0.01 | 1.748 | 42.81 | 1.76 | 10.4 | 89.0 | 0.6 | -2.39 | 2.18 | 0.66 | 0.42 | -0.25 | 149606 | 6419 | 58 | 4704 | 76 | 0 | 0 | logfile |
✔ | 5L4K | 4002 | 2024-03-17 | 2016-05-25 | 3.9 | 4.00 | — | 4.2 | 0.007 | 0.85 | 3.0 | 0.05 | 16.12 | 0.01 | 1.808 | 5.03 | 3.82 | 11.8 | 85.0 | 3.2 | -6.15 | 0.34 | 0.64 | 0.39 | 4.0 | 0.004 | 0.78 | 0.0 | 0.04 | 17.47 | 0.01 | 1.839 | 18.12 | 3.77 | 9.8 | 89.8 | 0.4 | -1.95 | 1.76 | 0.37 | 0.70 | 0.27 | 79649 | 5000 | 12 | 0 | 0 | 0 | 39990 | logfile |
✔ | 5L4G | 4002 | 2024-03-17 | 2016-05-25 | 3.9 | 4.09 | — | 4.0 | 0.007 | 0.96 | 2.0 | 0.05 | 15.67 | 0.01 | 1.788 | 6.11 | 3.00 | 9.6 | 88.5 | 1.9 | -5.01 | 0.65 | 0.86 | 2.39 | 4.0 | 0.004 | 0.74 | 0.0 | 0.04 | 17.18 | 0.00 | 1.770 | 12.44 | 3.91 | 5.0 | 94.8 | 0.2 | -0.53 | 2.89 | 0.63 | 0.81 | 1.90 | 135488 | 8637 | 40 | 0 | 11 | 0 | 67796 | logfile |
✔ | 5G5L | 3439 | 2024-03-23 | 2016-05-26 | 4.8 | 5.08 | — | 4.8 | 0.010 | 1.38 | 14.0 | 0.09 | 16.60 | 0.01 | 0.675 | 31.05 | 7.76 | 6.0 | 92.2 | 1.8 | -2.38 | 0.81 | 0.71 | — | 4.8 | 0.004 | 0.74 | 0.0 | 0.04 | 13.39 | 0.00 | 2.050 | 18.55 | 0.00 | 4.1 | 95.9 | 0.1 | 0.41 | 3.23 | 0.86 | 0.83 | — | 37349 | 4686 | 20 | 0 | 7 | 0 | 0 | logfile |
✔ | 5K7L | 8215 | 2024-03-19 | 2016-05-26 | 3.78 | 6.37 | — | 3.6 | 0.008 | 1.36 | 20.0 | 0.07 | 13.10 | 0.00 | 2.315 | 9.11 | 0.35 | 7.3 | 92.6 | 0.1 | -0.20 | 0.75 | 0.79 | 1.04 | 3.6 | 0.003 | 0.67 | 0.0 | 0.04 | 13.67 | 0.00 | 2.152 | 10.26 | 0.79 | 4.3 | 95.7 | 0.0 | 1.47 | 2.35 | 0.75 | 0.81 | 0.66 | 24696 | 3372 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 5KCS | 8238 | 2024-03-25 | 2016-06-06 | 3.9 | 4.07 | — | 4.0 | 0.006 | 0.51 | 0.0 | 0.04 | 22.06 | 0.02 | 1.981 | 9.49 | 0.19 | 8.8 | 88.6 | 2.6 | -3.12 | 0.61 | 0.61 | 0.64 | 4.0 | 0.005 | 0.83 | 0.0 | 0.04 | 22.95 | 0.01 | 1.993 | 18.74 | 5.38 | 10.1 | 89.3 | 0.6 | -2.11 | 1.93 | 0.71 | 0.81 | 0.90 | 148945 | 6656 | 59 | 4641 | 1 | 0 | 0 | logfile |
✔ | 5KCR | 8237 | 2024-03-22 | 2016-06-06 | 3.6 | 4.09 | — | 4.0 | 0.006 | 0.62 | 0.0 | 0.07 | 22.21 | 0.01 | 2.027 | 6.59 | 0.46 | 5.7 | 92.7 | 1.7 | -2.61 | 0.75 | 0.79 | 1.17 | 4.0 | 0.006 | 0.77 | 0.0 | 0.04 | 22.79 | 0.01 | 1.216 | 18.79 | 4.45 | 6.5 | 93.0 | 0.5 | -0.81 | 0.93 | 0.77 | 0.85 | 1.42 | 145689 | 5854 | 57 | 4646 | 2 | 0 | 0 | logfile |
✔ | 5KEL | 8240 | 2024-03-17 | 2016-06-09 | 4.3 | 4.47 | — | 4.3 | 0.015 | 1.82 | 0.0 | 0.10 | 14.92 | 0.01 | 1.763 | 12.56 | 0.45 | 3.4 | 95.3 | 1.3 | 1.64 | 0.78 | 0.75 | — | 4.3 | 0.005 | 0.88 | 0.0 | 0.05 | 13.11 | 0.01 | 1.973 | 21.97 | 0.00 | 8.3 | 91.3 | 0.5 | -1.03 | 1.05 | 0.80 | 0.81 | — | 19278 | 2409 | 33 | 0 | 45 | 0 | 0 | logfile |
✔ | 5KEN | 8242 | 2024-03-17 | 2016-06-09 | 4.3 | 6.36 | 5.67 | 5.5 | 0.014 | 1.82 | 4.0 | 0.19 | 13.22 | 0.01 | 1.282 | 7.71 | 0.22 | 2.9 | 95.6 | 1.4 | 1.45 | 0.82 | 0.71 | — | 5.5 | 0.005 | 0.84 | 0.0 | 0.05 | 13.22 | 0.00 | 1.955 | 38.58 | 0.00 | 8.6 | 90.7 | 0.7 | -1.84 | 2.78 | 0.84 | 0.81 | — | 16913 | 2147 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 5KGF | 8246 | 2024-03-16 | 2016-06-13 | 4.54 | 4.64 | — | 4.5 | 0.009 | 1.37 | 2.0 | 0.07 | 27.92 | 0.01 | 1.243 | 27.10 | 0.12 | 6.5 | 93.1 | 0.4 | -4.86 | 0.79 | 0.76 | — | 4.5 | 0.004 | 0.70 | 0.0 | 0.04 | 26.26 | 0.01 | 2.162 | 18.01 | 0.00 | 5.9 | 93.8 | 0.2 | -0.44 | 1.81 | 0.83 | 0.84 | — | 13782 | 986 | 14 | 290 | 0 | 0 | 0 | logfile |
✔ | 5LC5 | 4032 | 2024-03-25 | 2016-06-19 | 4.35 | 4.47 | 4.28 | 4.3 | 0.009 | 1.47 | 18.0 | 1.11 | 14.69 | 0.01 | 1.587 | 6.08 | 3.67 | 8.6 | 87.7 | 3.7 | -4.81 | 0.69 | 0.71 | — | 4.3 | 0.009 | 1.83 | 0.0 | 0.33 | 13.11 | 0.00 | 2.114 | 14.34 | 0.03 | 9.4 | 89.7 | 0.9 | -1.47 | 1.67 | 0.70 | 0.76 | — | 51718 | 5916 | 52 | 0 | 1988 | 0 | 0 | logfile |
✔ | 5LD2 | 4038 | 2024-03-19 | 2016-06-23 | 3.83 | 4.18 | — | 3.9 | 0.010 | 1.05 | 2.0 | 0.05 | 13.27 | 0.01 | 1.975 | 17.88 | 0.25 | 5.7 | 94.0 | 0.2 | -3.86 | 0.88 | 0.87 | 2.00 | 3.9 | 0.005 | 0.70 | 0.0 | 0.04 | 15.87 | 0.00 | 1.915 | 14.41 | 1.28 | 5.1 | 94.8 | 0.1 | 0.36 | 0.76 | 0.87 | 0.86 | 1.73 | 23981 | 2857 | 5 | 51 | 22 | 0 | 0 | logfile |
✔ | 5KMG | 8266 | 2024-03-11 | 2016-06-27 | 3.5 | 4.13 | — | 4.0 | 0.019 | 1.34 | 0.0 | 0.10 | 13.69 | 0.02 | 1.894 | 3.71 | 0.00 | 5.8 | 92.0 | 2.2 | -1.01 | 0.49 | 0.75 | 2.38 | 4.0 | 0.004 | 0.72 | 0.0 | 0.04 | 17.25 | 0.00 | 1.879 | 12.64 | 2.04 | 3.7 | 96.3 | 0.0 | 1.30 | 1.01 | 0.47 | 0.79 | 2.25 | 111594 | 13860 | 70 | 14 | 42 | 0 | 0 | logfile |