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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3J9E | 6240 | 2023-04-20 | 2015-01-10 | 3.3 | 2.66 | — | 3.3 | 0.032 | 3.28 | 0.0 | 0.09 | 21.31 | 0.02 | 1.223 | 20.81 | 24.26 | 9.8 | 87.3 | 2.9 | -3.41 | 0.77 | 0.88 | 3.26 | 3.3 | 0.004 | 0.78 | 0.0 | 0.04 | 17.71 | 0.00 | 2.103 | 10.58 | 0.46 | 7.9 | 91.5 | 0.6 | 0.80 | 1.24 | 0.72 | 0.85 | 3.33 | 4098 | 520 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9J | 5778 | 2023-04-25 | 2015-02-02 | 3.275 | 3.52 | 3.19 | 3.6 | 0.015 | 1.08 | 0.0 | 0.09 | 9.35 | 0.01 | 2.266 | 2.70 | 0.00 | 3.3 | 94.5 | 2.2 | -0.65 | 0.53 | 0.57 | 2.57 | 3.5 | 0.004 | 0.66 | 0.0 | 0.04 | 15.76 | 0.00 | 1.889 | 14.38 | 0.17 | 6.8 | 92.7 | 0.5 | 2.20 | 3.87 | 0.59 | 0.77 | 1.93 | 21068 | 1260 | 4 | 0 | 0 | 0 | 10624 | logfile |
✔ | 3J9K | 2870 | 2023-04-26 | 2015-02-04 | 4.1 | 4.22 | — | 4.1 | 0.022 | 2.13 | 128.0 | 0.13 | 20.83 | 0.01 | 1.058 | 99.51 | 29.75 | 12.8 | 86.2 | 1.0 | -3.18 | 0.68 | 0.68 | — | 4.1 | 0.003 | 0.77 | 0.0 | 0.04 | 13.66 | 0.00 | 2.071 | 16.76 | 0.01 | 5.4 | 94.5 | 0.2 | -1.08 | 1.15 | 0.69 | 0.70 | — | 126512 | 10352 | 48 | 0 | 8304 | 0 | 0 | logfile |
✔ | 3J9L | 2871 | 2023-04-21 | 2015-02-04 | 4.0 | 4.10 | — | 4.0 | 0.022 | 1.96 | 105.0 | 0.12 | 19.47 | 0.01 | 1.058 | 81.48 | 27.30 | 10.5 | 88.6 | 0.9 | -4.09 | 0.66 | 0.68 | — | 4.0 | 0.048 | 3.15 | 43.0 | 0.12 | 19.35 | 0.02 | 1.814 | 99.41 | 4.32 | 39.9 | 58.2 | 1.9 | -7.71 | 2.86 | 0.73 | 0.81 | — | 112951 | 8688 | 31 | 0 | 8320 | 0 | 0 | logfile |
✔ | 3J9P | 6267 | 2023-04-24 | 2015-02-14 | 4.24 | 2.59 | — | 4.1 | 0.009 | 1.85 | 4.0 | 0.07 | 17.68 | 0.01 | 2.113 | 26.35 | 4.64 | 10.2 | 88.2 | 1.6 | -3.58 | 0.73 | 0.78 | — | 4.2 | 0.004 | 0.99 | 0.0 | 0.04 | 13.80 | 0.00 | 2.128 | 17.46 | 0.00 | 8.5 | 90.8 | 0.7 | -1.73 | 1.17 | 0.73 | 0.80 | — | 16952 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9S | 6272 | 2023-04-21 | 2015-02-19 | 2.6 | 3.83 | — | 3.5 | 0.020 | 1.80 | 0.0 | 0.12 | 18.55 | 0.01 | 0.216 | 25.10 | 6.86 | 1.3 | 98.0 | 0.8 | 1.97 | 0.68 | 0.76 | 3.15 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 17.43 | 0.00 | 1.145 | 9.20 | 1.43 | 1.5 | 98.5 | 0.0 | 1.37 | 1.90 | 0.70 | 0.89 | 3.19 | 9813 | 1191 | 3 | 0 | 15 | 315 | 0 | logfile |
✔ | 5AJ3 | 2913 | 2023-04-23 | 2015-02-20 | 3.6 | 3.73 | — | 3.7 | 0.018 | 1.28 | 0.0 | 0.05 | 18.85 | 0.07 | 1.844 | 24.00 | 10.71 | 3.9 | 96.0 | 0.1 | -3.65 | 0.86 | 0.86 | 2.03 | 3.6 | 0.004 | 1.41 | 0.0 | 0.04 | 19.14 | 0.02 | 1.819 | 16.06 | 0.59 | 4.7 | 95.3 | 0.0 | 0.16 | 1.64 | 0.84 | 0.82 | 1.63 | 66363 | 4665 | 44 | 1102 | 1006 | 118 | 0 | logfile |
✔ | 4UFT | 2867 | 2023-04-23 | 2015-03-19 | 4.3 | 4.24 | — | 4.2 | 0.005 | 0.96 | 0.0 | 0.05 | 11.26 | 0.00 | 1.169 | 8.53 | 0.31 | 13.2 | 83.9 | 3.0 | -4.63 | 0.54 | 0.70 | — | 4.2 | 0.004 | 0.78 | 0.0 | 0.04 | 13.25 | 0.01 | 2.091 | 11.84 | 0.05 | 8.2 | 90.7 | 1.1 | -2.58 | 1.93 | 0.59 | 0.79 | — | 119847 | 14703 | 78 | 234 | 0 | 0 | 0 | logfile |
✔ | 4Ui9 | 2924 | 2023-04-23 | 2015-03-27 | 3.6 | 3.87 | — | 3.6 | 0.016 | 1.97 | 124.0 | 0.11 | 17.96 | 0.01 | 0.849 | 19.88 | 11.86 | 5.3 | 92.8 | 1.9 | -1.90 | 0.85 | 0.73 | 1.60 | 3.6 | 0.003 | 0.81 | 0.0 | 0.04 | 17.07 | 0.00 | 2.102 | 15.06 | 0.42 | 5.4 | 94.2 | 0.4 | 0.87 | 3.18 | 0.89 | 0.83 | 1.17 | 66453 | 8472 | 25 | 0 | 5 | 0 | 0 | logfile |
✔ | 4UiS | 2974 | 2023-04-22 | 2015-04-03 | 4.4 | 4.48 | — | 4.4 | 0.009 | 1.29 | 0.0 | 0.06 | 9.92 | 0.01 | 1.546 | 24.94 | 1.19 | 7.7 | 87.4 | 5.0 | -2.00 | 0.50 | 0.56 | — | 4.4 | 0.004 | 0.80 | 0.0 | 0.04 | 11.88 | 0.00 | 2.133 | 16.76 | 0.00 | 9.9 | 88.9 | 1.2 | -1.58 | 1.65 | 0.55 | 0.73 | — | 8518 | 791 | 5 | 0 | 458 | 0 | 0 | logfile |
✘ | 3JA8 | 6338 | 2023-04-29 | 2015-05-09 | 3.8 | 3.83 | — | 3.8 | 0.014 | 1.57 | 0.0 | 0.06 | 10.98 | 0.01 | 1.749 | 29.23 | 0.37 | 7.9 | 91.0 | 1.1 | -4.26 | 0.68 | 0.80 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29838 | 3786 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 3JAC | 6343 | 2023-04-23 | 2015-06-05 | 4.8 | 6.42 | — | 9.4 | 0.007 | 1.81 | 3.0 | 0.07 | 10.64 | 0.03 | 1.020 | 57.64 | 4.17 | 5.0 | 90.3 | 4.8 | 1.36 | 0.42 | 0.40 | — | 9.1 | 0.012 | 1.69 | 0.0 | 0.06 | 13.69 | 0.01 | 1.923 | 77.11 | 0.00 | 27.1 | 71.7 | 1.2 | -5.31 | 3.69 | 0.54 | 0.61 | — | 15741 | 1716 | 3 | 0 | 1038 | 0 | 0 | logfile |
✔ | 3JAD | 6344 | 2023-04-22 | 2015-06-08 | 3.9 | 2.16 | — | 3.8 | 0.008 | 1.33 | 0.0 | 0.06 | 8.45 | 0.00 | 2.250 | 16.87 | 0.43 | 2.7 | 97.3 | 0.0 | -2.13 | 0.68 | 0.72 | 0.33 | 3.0 | 0.003 | 0.76 | 0.0 | 0.04 | 12.95 | 0.00 | 2.195 | 16.00 | 0.17 | 4.0 | 96.0 | 0.0 | 0.22 | 1.23 | 0.70 | 0.77 | 0.37 | 12705 | 1685 | 15 | 0 | 15 | 0 | 0 | logfile |
✘ | 3JAF | 6346 | 2023-04-23 | 2015-06-08 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13865 | 1710 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 3JAE | 6345 | 2023-04-22 | 2015-06-08 | 3.9 | 2.88 | — | 3.5 | 0.006 | 1.26 | 0.0 | 0.05 | 9.27 | 0.01 | 2.202 | 13.69 | 0.00 | 0.9 | 99.1 | 0.0 | -1.69 | 0.70 | 0.74 | 1.87 | 3.2 | 0.003 | 0.87 | 0.0 | 0.04 | 13.61 | 0.00 | 2.157 | 15.62 | 0.16 | 2.8 | 97.2 | 0.0 | 0.08 | 1.49 | 0.72 | 0.82 | 1.59 | 12825 | 1690 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 3JAM | 3047 | 2023-04-28 | 2015-06-17 | 3.46 | 3.54 | 3.52 | 3.5 | 0.007 | 1.32 | 63.0 | 0.10 | 21.31 | 0.01 | 1.398 | 7.14 | 13.45 | 10.2 | 86.0 | 3.8 | -1.98 | 0.64 | 0.83 | 1.53 | 3.5 | 0.003 | 0.71 | 0.0 | 0.04 | 19.38 | 0.01 | 1.893 | 13.10 | 0.65 | 9.1 | 89.8 | 1.1 | -1.00 | 0.73 | 0.67 | 0.86 | 1.61 | 77850 | 5056 | 42 | 1780 | 83 | 0 | 0 | logfile |
✔ | 3JAU | 6366 | 2023-04-22 | 2015-06-24 | 4.8 | 4.76 | — | 6.0 | 0.027 | 2.66 | 660.0 | 0.16 | 14.74 | 0.02 | 1.686 | 10.72 | 1.90 | 4.6 | 94.1 | 1.3 | -2.16 | 0.21 | 0.38 | — | 5.4 | 0.003 | 0.70 | 0.0 | 0.04 | 13.62 | 0.00 | 2.034 | 12.63 | 0.00 | 4.6 | 95.0 | 0.4 | -1.07 | 1.45 | 0.24 | 0.57 | — | 114900 | 14700 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 5A63 | 3061 | 2023-04-21 | 2015-06-24 | 3.4 | 3.50 | 3.42 | 3.5 | 0.010 | 1.69 | 8.0 | 0.11 | 19.07 | 0.01 | 2.079 | 39.51 | 13.74 | 6.4 | 91.5 | 2.1 | -0.17 | 0.36 | 0.40 | 2.09 | 3.5 | 0.003 | 0.76 | 0.0 | 0.04 | 17.76 | 0.00 | 2.217 | 12.14 | 1.05 | 5.5 | 94.1 | 0.3 | 0.06 | 3.24 | 0.62 | 0.82 | 1.80 | 10003 | 1223 | 13 | 0 | 22 | 0 | 0 | logfile |
✔ | 5A6E | 3062 | 2023-04-22 | 2015-06-25 | 4.5 | 6.76 | — | 5.1 | 0.010 | 3.73 | 0.0 | 0.05 | 15.55 | 0.01 | 2.112 | 8.77 | 3.19 | 11.1 | 88.8 | 0.2 | -5.00 | 0.36 | 0.56 | — | 4.8 | 0.004 | 0.60 | 0.0 | 0.03 | 10.41 | 0.00 | 2.080 | 11.78 | 0.00 | 5.3 | 94.7 | 0.0 | -0.72 | 1.45 | 0.40 | 0.73 | — | 11093 | 634 | 4 | 0 | 182 | 0 | 5102 | logfile |
✔ | 5A6F | 3063 | 2023-04-21 | 2015-06-25 | 4.2 | 5.75 | — | 5.0 | 0.012 | 1.50 | 0.0 | 0.05 | 12.32 | 0.01 | 2.112 | 10.08 | 3.74 | 12.2 | 87.6 | 0.2 | -4.94 | 0.56 | 0.74 | — | 4.9 | 0.002 | 0.56 | 0.0 | 0.04 | 10.89 | 0.00 | 2.048 | 8.96 | 0.00 | 4.7 | 95.3 | 0.0 | -0.78 | 0.97 | 0.57 | 0.75 | — | 8881 | 540 | 2 | 0 | 43 | 0 | 4330 | logfile |