Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J6E	5895	2022-04-05	2014-02-18	4.7	4.79	—	4.7	0.021	2.60	18.0	0.13	13.25	0.01	1.539	5.54	0.28	3.4	96.2	0.4	-0.68	0.62	0.66	—	4.7	0.003	0.74	0.0	0.04	14.07	0.01	1.811	20.09	0.02	2.9	97.1	0.0	0.38	2.15	0.69	0.80	—	60984	7686	54	0	36	72	0	logfile
✔	3J6F	5896	2022-04-05	2014-02-19	4.9	4.97	—	4.9	0.021	2.64	64.0	0.14	14.01	0.01	2.069	5.57	0.14	3.1	96.3	0.6	-1.05	0.62	0.66	—	4.9	0.003	0.75	0.0	0.05	14.46	0.01	1.799	21.06	0.09	3.0	97.0	0.0	0.30	2.79	0.69	0.81	—	60903	7686	45	9	18	36	0	logfile
✔	3J6J	5925	2022-04-05	2014-03-13	3.64	4.17	—	3.9	0.007	1.41	0.0	0.06	15.90	0.00	1.578	33.23	6.10	4.1	95.0	0.9	-1.46	0.86	0.83	1.23	3.9	0.006	1.01	0.0	0.05	18.29	0.01	2.105	27.55	1.60	2.5	97.2	0.3	-0.37	2.60	0.89	0.89	1.75	6344	776	8	0	0	0	0	logfile
✔	3J6Q	5926	2022-04-09	2014-03-20	3.8	4.07	—	4.1	0.010	1.16	0.0	0.06	11.65	0.01	1.279	19.23	0.64	11.7	84.1	4.2	-4.60	0.46	0.59	1.31	4.0	0.008	1.04	0.0	0.05	15.17	0.01	1.723	11.59	0.15	10.3	89.0	0.7	-2.91	2.89	0.55	0.74	1.69	42575	5300	10	0	0	0	0	logfile
✔	4V91	2599	2022-04-06	2014-03-21	3.7	3.84	—	3.8	0.133	4.77	525.0	0.43	20.66	0.07	0.695	20.11	12.79	14.1	78.2	7.8	-5.39	0.33	0.36	0.15	3.8	0.029	1.21	1.0	0.04	17.29	0.01	1.610	15.97	0.15	7.8	91.4	0.8	-2.72	1.86	0.61	0.79	1.30	125665	6450	45	3482	0	0	0	logfile
✔	3J79	2660	2022-04-06	2014-06-02	3.2	3.25	3.13	3.2	0.007	1.31	43.0	0.10	19.59	0.01	1.505	4.40	11.66	7.2	90.4	2.4	-1.45	0.53	0.71	0.94	3.2	0.004	0.70	0.0	0.04	18.11	0.01	1.858	14.37	0.88	6.3	93.2	0.5	-0.57	0.96	0.65	0.85	1.92	124514	6244	55	3460	168	0	0	logfile
✔	3J7A	2660	2022-04-06	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.39	49.0	0.10	19.81	0.01	1.715	4.55	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.004	0.74	0.0	0.04	18.16	0.01	1.853	17.45	0.94	8.9	89.8	1.2	-1.90	2.71	0.39	0.76	1.01	68866	4106	35	1682	69	0	0	logfile
✔	4UQ8	2676	2022-04-07	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.50	0.00	2.100	23.02	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	3J7H	5995	2022-04-08	2014-06-30	3.2	2.58	3.45	3.4	0.005	1.17	0.0	0.06	17.98	0.01	1.085	132.45	12.24	2.5	97.4	0.2	2.39	0.77	0.79	2.04	3.4	0.006	0.81	0.0	0.04	17.49	0.01	2.005	14.54	0.77	3.8	96.2	0.0	0.02	1.65	0.80	0.87	2.54	32828	4088	8	0	4	0	0	logfile
✔	3J7M	6000	2022-04-21	2014-07-18	3.8	3.16	—	3.9	0.014	1.63	0.0	0.11	11.98	0.01	0.337	30.57	1.61	12.4	85.4	2.2	-1.80	0.73	0.78	2.06	3.3	0.040	1.15	0.0	0.05	17.36	0.01	1.443	22.06	2.16	9.0	90.4	0.6	-2.31	1.58	0.71	0.78	1.70	217080	28680	180	0	0	0	0	logfile
✔	3J7L	6000	2022-04-20	2014-07-18	3.8	3.16	—	3.8	0.010	1.33	0.0	0.06	10.57	0.01	2.009	21.85	0.27	5.3	92.1	2.5	-0.59	0.69	0.78	2.14	3.3	0.004	0.82	0.0	0.05	16.88	0.01	2.112	13.14	1.00	4.9	94.5	0.6	-0.52	1.00	0.71	0.78	1.79	216780	28620	180	0	0	0	0	logfile
✔	3J7N	6000	2022-04-21	2014-07-18	3.8	3.16	—	3.9	0.014	1.65	120.0	0.11	11.81	0.01	0.277	35.58	1.88	11.4	85.9	2.8	-1.51	0.73	0.78	2.08	3.4	0.036	0.95	1.0	0.05	17.74	0.01	1.559	22.24	0.73	6.0	92.8	1.2	-1.55	1.79	0.71	0.78	1.37	217080	28680	180	0	0	0	0	logfile
✔	3J7Y	2762	2022-04-08	2014-08-26	3.4	3.45	—	3.4	0.008	1.34	31.0	0.10	19.93	0.01	1.708	8.60	8.93	7.9	89.9	2.2	-1.78	0.72	0.83	2.09	3.4	0.004	0.77	0.0	0.04	18.54	0.01	1.526	12.29	0.27	6.8	92.6	0.6	-0.20	3.10	0.73	0.83	2.01	94121	7469	56	1530	208	0	0	logfile
✔	3J7Z	6057	2022-04-08	2014-08-27	3.9	3.80	—	3.9	0.009	1.42	5.0	0.10	15.56	0.01	1.426	11.65	10.91	16.3	77.2	6.5	-5.00	0.75	0.70	0.71	3.8	0.006	0.81	1.0	0.05	15.74	0.01	1.573	16.80	0.32	12.7	85.3	2.0	-3.35	1.78	0.79	0.80	0.92	90700	3453	36	2975	1	0	0	logfile
✔	3J80	2764	2022-04-07	2014-08-28	3.75	3.87	3.84	3.8	0.007	1.36	43.0	0.11	22.30	0.01	1.747	9.35	13.53	12.2	83.2	4.6	-2.33	0.79	0.86	0.90	3.7	0.007	0.87	1.0	0.04	20.61	0.01	1.505	24.57	0.42	11.5	87.0	1.5	-1.95	1.62	0.78	0.82	0.92	77716	5039	41	1779	70	0	0	logfile
✔	4UY8	2773	2022-04-08	2014-08-29	3.8	4.07	—	4.1	0.010	1.50	8.0	0.07	15.49	0.01	0.879	12.34	11.16	16.3	76.9	6.8	-5.04	0.53	0.64	0.36	4.0	0.008	0.86	1.0	0.04	17.39	0.01	1.577	71.19	0.53	18.7	79.0	2.4	-3.83	1.54	0.59	0.81	0.97	92995	3468	47	3049	144	439	8	logfile
✔	3J81	2763	2022-04-07	2014-08-29	4.0	4.19	—	4.0	0.007	1.30	64.0	0.10	22.05	0.01	1.076	7.72	12.47	11.6	83.5	4.9	-2.31	0.79	0.84	—	4.0	0.005	0.84	0.0	0.04	20.82	0.01	1.749	27.61	0.98	12.1	86.4	1.5	-2.01	2.08	0.79	0.82	—	83760	5686	48	1876	84	0	0	logfile
✔	4V1A	2787	2022-04-08	2014-09-25	3.4	3.43	—	3.4	0.009	1.29	0.0	0.05	13.81	0.01	2.067	12.17	6.03	4.6	95.3	0.1	-2.62	0.37	0.78	1.69	3.4	0.005	0.86	0.0	0.04	16.95	0.01	2.090	11.91	0.35	4.4	95.5	0.1	0.35	1.90	0.38	0.77	1.61	31917	3843	24	0	94	0	0	logfile
✔	4V19	2787	2022-04-06	2014-09-25	3.4	3.44	—	3.4	0.009	1.23	0.0	0.05	20.02	0.01	1.860	9.75	6.97	3.8	96.1	0.1	-2.85	0.76	0.88	2.04	3.4	0.009	0.84	1.0	0.04	19.08	0.01	1.131	8.62	0.37	4.1	95.9	0.1	-0.24	1.51	0.76	0.86	2.11	69409	4361	42	1583	171	204	0	logfile
✔	4V1W	2788	2022-04-08	2014-10-02	4.7	4.69	—	4.7	0.020	2.45	172.0	0.17	18.97	0.01	2.533	7.94	7.67	3.0	96.5	0.6	-2.40	0.74	0.84	—	4.6	0.004	0.98	0.0	0.05	17.69	0.01	2.092	22.73	0.00	4.8	95.2	0.0	0.73	2.78	0.72	0.76	—	32736	4080	24	0	0	0	0	logfile

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