Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J9E	6240	2023-04-20	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	20.81	24.26	9.8	87.3	2.9	-3.41	0.77	0.88	3.26	3.3	0.004	0.78	0.0	0.04	17.71	0.00	2.103	10.58	0.46	7.9	91.5	0.6	0.80	1.24	0.72	0.85	3.33	4098	520	1	0	0	0	0	logfile
✔	3J9J	5778	2023-04-25	2015-02-02	3.275	3.52	3.19	3.6	0.015	1.08	0.0	0.09	9.35	0.01	2.266	2.70	0.00	3.3	94.5	2.2	-0.65	0.53	0.57	2.57	3.5	0.004	0.66	0.0	0.04	15.76	0.00	1.889	14.38	0.17	6.8	92.7	0.5	2.20	3.87	0.59	0.77	1.93	21068	1260	4	0	0	0	10624	logfile
✔	3J9K	2870	2023-04-26	2015-02-04	4.1	4.22	—	4.1	0.022	2.13	128.0	0.13	20.83	0.01	1.058	99.51	29.75	12.8	86.2	1.0	-3.18	0.68	0.68	—	4.1	0.003	0.77	0.0	0.04	13.66	0.00	2.071	16.76	0.01	5.4	94.5	0.2	-1.08	1.15	0.69	0.70	—	126512	10352	48	0	8304	0	0	logfile
✔	3J9L	2871	2023-04-21	2015-02-04	4.0	4.10	—	4.0	0.022	1.96	105.0	0.12	19.47	0.01	1.058	81.48	27.30	10.5	88.6	0.9	-4.09	0.66	0.68	—	4.0	0.048	3.15	43.0	0.12	19.35	0.02	1.814	99.41	4.32	39.9	58.2	1.9	-7.71	2.86	0.73	0.81	—	112951	8688	31	0	8320	0	0	logfile
✔	3J9P	6267	2023-04-24	2015-02-14	4.24	2.59	—	4.1	0.009	1.85	4.0	0.07	17.68	0.01	2.113	26.35	4.64	10.2	88.2	1.6	-3.58	0.73	0.78	—	4.2	0.004	0.99	0.0	0.04	13.80	0.00	2.128	17.46	0.00	8.5	90.8	0.7	-1.73	1.17	0.73	0.80	—	16952	2240	4	0	0	0	0	logfile
✔	3J9S	6272	2023-04-21	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	25.10	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	3.5	0.003	0.62	0.0	0.04	17.43	0.00	1.145	9.20	1.43	1.5	98.5	0.0	1.37	1.90	0.70	0.89	3.19	9813	1191	3	0	15	315	0	logfile
✔	5AJ3	2913	2023-04-23	2015-02-20	3.6	3.73	—	3.7	0.018	1.28	0.0	0.05	18.85	0.07	1.844	24.00	10.71	3.9	96.0	0.1	-3.65	0.86	0.86	2.03	3.6	0.004	1.41	0.0	0.04	19.14	0.02	1.819	16.06	0.59	4.7	95.3	0.0	0.16	1.64	0.84	0.82	1.63	66363	4665	44	1102	1006	118	0	logfile
✔	4UFT	2867	2023-04-23	2015-03-19	4.3	4.24	—	4.2	0.005	0.96	0.0	0.05	11.26	0.00	1.169	8.53	0.31	13.2	83.9	3.0	-4.63	0.54	0.70	—	4.2	0.004	0.78	0.0	0.04	13.25	0.01	2.091	11.84	0.05	8.2	90.7	1.1	-2.58	1.93	0.59	0.79	—	119847	14703	78	234	0	0	0	logfile
✔	4Ui9	2924	2023-04-23	2015-03-27	3.6	3.87	—	3.6	0.016	1.97	124.0	0.11	17.96	0.01	0.849	19.88	11.86	5.3	92.8	1.9	-1.90	0.85	0.73	1.60	3.6	0.003	0.81	0.0	0.04	17.07	0.00	2.102	15.06	0.42	5.4	94.2	0.4	0.87	3.18	0.89	0.83	1.17	66453	8472	25	0	5	0	0	logfile
✔	4UiS	2974	2023-04-22	2015-04-03	4.4	4.48	—	4.4	0.009	1.29	0.0	0.06	9.92	0.01	1.546	24.94	1.19	7.7	87.4	5.0	-2.00	0.50	0.56	—	4.4	0.004	0.80	0.0	0.04	11.88	0.00	2.133	16.76	0.00	9.9	88.9	1.2	-1.58	1.65	0.55	0.73	—	8518	791	5	0	458	0	0	logfile
✘	3JA8	6338	2023-04-29	2015-05-09	3.8	3.83	—	3.8	0.014	1.57	0.0	0.06	10.98	0.01	1.749	29.23	0.37	7.9	91.0	1.1	-4.26	0.68	0.80	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29838	3786	12	0	6	0	0	logfile
✔	3JAC	6343	2023-04-23	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.69	0.0	0.06	13.69	0.01	1.923	77.11	0.00	27.1	71.7	1.2	-5.31	3.69	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✔	3JAD	6344	2023-04-22	2015-06-08	3.9	2.16	—	3.8	0.008	1.33	0.0	0.06	8.45	0.00	2.250	16.87	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	3.0	0.003	0.76	0.0	0.04	12.95	0.00	2.195	16.00	0.17	4.0	96.0	0.0	0.22	1.23	0.70	0.77	0.37	12705	1685	15	0	15	0	0	logfile
✘	3JAF	6346	2023-04-23	2015-06-08	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13865	1710	15	0	15	0	0	logfile
✔	3JAE	6345	2023-04-22	2015-06-08	3.9	2.88	—	3.5	0.006	1.26	0.0	0.05	9.27	0.01	2.202	13.69	0.00	0.9	99.1	0.0	-1.69	0.70	0.74	1.87	3.2	0.003	0.87	0.0	0.04	13.61	0.00	2.157	15.62	0.16	2.8	97.2	0.0	0.08	1.49	0.72	0.82	1.59	12825	1690	10	0	10	0	0	logfile
✔	3JAM	3047	2023-04-28	2015-06-17	3.46	3.54	3.52	3.5	0.007	1.32	63.0	0.10	21.31	0.01	1.398	7.14	13.45	10.2	86.0	3.8	-1.98	0.64	0.83	1.53	3.5	0.003	0.71	0.0	0.04	19.38	0.01	1.893	13.10	0.65	9.1	89.8	1.1	-1.00	0.73	0.67	0.86	1.61	77850	5056	42	1780	83	0	0	logfile
✔	3JAU	6366	2023-04-22	2015-06-24	4.8	4.76	—	6.0	0.027	2.66	660.0	0.16	14.74	0.02	1.686	10.72	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.003	0.70	0.0	0.04	13.62	0.00	2.034	12.63	0.00	4.6	95.0	0.4	-1.07	1.45	0.24	0.57	—	114900	14700	180	0	0	0	0	logfile
✔	5A63	3061	2023-04-21	2015-06-24	3.4	3.50	3.42	3.5	0.010	1.69	8.0	0.11	19.07	0.01	2.079	39.51	13.74	6.4	91.5	2.1	-0.17	0.36	0.40	2.09	3.5	0.003	0.76	0.0	0.04	17.76	0.00	2.217	12.14	1.05	5.5	94.1	0.3	0.06	3.24	0.62	0.82	1.80	10003	1223	13	0	22	0	0	logfile
✔	5A6E	3062	2023-04-22	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.004	0.60	0.0	0.03	10.41	0.00	2.080	11.78	0.00	5.3	94.7	0.0	-0.72	1.45	0.40	0.73	—	11093	634	4	0	182	0	5102	logfile
✔	5A6F	3063	2023-04-21	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.9	0.002	0.56	0.0	0.04	10.89	0.00	2.048	8.96	0.00	4.7	95.3	0.0	-0.78	0.97	0.57	0.75	—	8881	540	2	0	43	0	4330	logfile

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