Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J6J	5925	2022-07-03	2014-03-13	3.64	4.17	—	3.9	0.007	1.41	0.0	0.06	15.90	0.00	1.578	33.23	6.10	4.1	95.0	0.9	-1.46	0.86	0.83	1.23	3.9	0.006	1.01	0.0	0.05	18.29	0.01	2.105	27.55	1.60	2.5	97.2	0.3	-0.37	2.60	0.89	0.89	1.75	6344	776	8	0	0	0	0	logfile
✔	3J6Q	5926	2022-07-07	2014-03-20	3.8	4.07	—	4.1	0.010	1.16	0.0	0.06	11.65	0.01	1.279	19.58	0.64	11.7	84.1	4.2	-4.60	0.46	0.59	1.31	4.0	0.008	1.04	0.0	0.05	15.17	0.01	1.723	11.78	0.15	10.3	89.0	0.7	-2.91	2.89	0.55	0.74	1.69	42575	5300	10	0	0	0	0	logfile
✔	4V91	2599	2022-07-05	2014-03-21	3.7	3.84	—	3.8	0.133	4.77	525.0	0.43	20.66	0.07	0.695	20.15	12.79	14.1	78.2	7.8	-5.39	0.33	0.36	0.15	3.8	0.037	1.45	1.0	0.04	17.34	0.02	1.816	16.56	0.20	8.3	90.9	0.7	-2.82	1.96	0.62	0.80	1.42	125665	6450	45	3482	0	0	0	logfile
✔	3J79	2660	2022-07-05	2014-06-02	3.2	3.25	3.13	3.2	0.007	1.31	43.0	0.10	19.59	0.01	1.505	4.44	11.66	7.2	90.4	2.4	-1.45	0.53	0.71	0.94	3.2	0.005	0.71	0.0	0.04	18.05	0.01	1.833	14.01	0.84	6.0	93.5	0.5	-0.49	0.96	0.65	0.85	1.86	124514	6244	55	3460	168	0	0	logfile
✔	3J7A	2660	2022-07-04	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.39	49.0	0.10	19.81	0.01	1.715	4.58	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.004	0.74	0.0	0.04	18.16	0.01	1.853	17.51	0.94	8.9	89.8	1.2	-1.90	2.71	0.39	0.76	1.01	68866	4106	35	1682	69	0	0	logfile
✔	4UQ8	2676	2022-07-06	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.50	0.00	2.100	23.02	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	3J7H	5995	2022-07-06	2014-06-30	3.2	2.58	3.45	3.4	0.005	1.17	0.0	0.06	17.98	0.01	1.085	133.11	12.24	2.5	97.4	0.2	2.39	0.77	0.79	2.04	3.4	0.006	0.81	0.0	0.04	17.49	0.01	2.005	14.79	0.77	3.8	96.2	0.0	0.02	1.65	0.80	0.87	2.54	32828	4088	8	0	4	0	0	logfile
✔	3J7Y	2762	2022-07-06	2014-08-26	3.4	3.45	—	3.4	0.008	1.34	31.0	0.10	19.93	0.01	1.708	8.68	8.93	7.9	89.9	2.2	-1.78	0.72	0.83	2.09	3.4	0.004	0.77	0.0	0.04	18.54	0.01	1.526	12.46	0.27	6.8	92.6	0.6	-0.20	3.10	0.73	0.83	2.01	94121	7469	56	1530	208	0	0	logfile
✘	3J7Z	6057	2022-07-05	2014-08-27	3.9	3.80	—	3.9	0.009	1.42	5.0	0.07	15.55	0.01	1.208	11.71	10.91	16.3	77.2	6.5	-5.00	0.75	0.70	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	90700	3453	36	2975	1	0	0	logfile
✔	3J80	2764	2022-07-05	2014-08-28	3.75	3.87	3.84	3.8	0.007	1.36	43.0	0.11	22.30	0.01	1.747	9.38	13.53	12.2	83.2	4.6	-2.33	0.79	0.86	0.90	3.7	0.007	0.87	1.0	0.04	20.61	0.01	1.505	24.70	0.42	11.5	87.0	1.5	-1.95	1.62	0.78	0.82	0.92	77716	5039	41	1779	70	0	0	logfile
✔	3J81	2763	2022-07-05	2014-08-29	4.0	4.19	—	4.0	0.007	1.30	64.0	0.10	22.05	0.01	1.076	7.78	12.47	11.6	83.5	4.9	-2.31	0.79	0.84	—	4.0	0.005	0.84	0.0	0.04	20.82	0.01	1.749	27.74	0.98	12.1	86.4	1.5	-2.01	2.08	0.79	0.82	—	83760	5686	48	1876	84	0	0	logfile
✘	4UY8	2773	2022-07-06	2014-08-29	3.8	4.07	—	4.1	0.010	1.50	8.0	0.07	15.49	0.01	0.879	12.40	11.16	16.3	76.9	6.8	-5.04	0.53	0.64	0.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92995	3468	47	3049	144	439	8	logfile
✘	4V19	2787	2022-07-04	2014-09-25	3.4	3.44	—	3.4	0.007	1.18	0.0	0.05	19.85	0.01	1.298	9.79	6.97	3.8	96.1	0.1	-2.85	0.76	0.88	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69409	4361	42	1583	171	204	0	logfile
✔	4V1A	2787	2022-07-06	2014-09-25	3.4	3.43	—	3.4	0.009	1.29	0.0	0.05	13.81	0.01	2.067	12.20	6.03	4.6	95.3	0.1	-2.62	0.37	0.78	1.69	3.4	0.005	0.86	0.0	0.04	16.95	0.01	2.090	12.13	0.35	4.4	95.5	0.1	0.35	1.90	0.38	0.77	1.61	31917	3843	24	0	94	0	0	logfile
✔	4V1W	2788	2022-07-06	2014-10-02	4.7	4.69	—	4.7	0.020	2.45	172.0	0.17	18.97	0.01	2.533	7.94	7.67	3.0	96.5	0.6	-2.40	0.74	0.84	—	4.6	0.004	0.98	0.0	0.05	17.69	0.01	2.092	22.73	0.00	4.8	95.2	0.0	0.73	2.78	0.72	0.76	—	32736	4080	24	0	0	0	0	logfile
✔	3J89	6123	2022-07-03	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	2.11	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.004	0.56	0.0	0.03	20.77	0.01	2.082	10.42	2.01	1.4	98.6	0.0	2.48	1.98	0.81	0.79	0.26	9025	551	19	0	0	0	4598	logfile
✘	3J8A	6124	2022-07-04	2014-10-08	3.7	3.90	—	3.8	0.006	1.28	0.0	0.05	14.94	0.01	2.145	19.64	6.28	11.2	87.4	1.4	-5.31	0.73	0.80	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15800	1835	12	0	280	0	0	logfile
✔	3J8H	2807	2022-07-03	2014-10-26	3.8	3.95	—	3.8	0.006	1.31	4.0	0.05	10.89	0.01	1.488	33.73	2.47	5.3	92.8	1.9	-2.06	0.65	0.64	1.52	3.8	0.004	0.82	2.0	0.04	14.02	0.00	2.071	17.90	0.48	5.8	93.8	0.4	0.03	2.10	0.73	0.76	0.94	111160	12796	12	0	2276	0	0	logfile
✔	3J8i	6179	2022-07-04	2014-11-06	4.7	4.79	—	4.7	0.018	1.67	0.0	0.11	19.47	0.01	2.125	76.34	14.53	6.4	87.5	6.1	-1.59	0.66	0.76	—	4.7	0.003	0.90	0.0	0.04	14.12	0.00	2.079	17.80	0.00	11.3	88.2	0.5	-2.07	1.75	0.65	0.71	—	14800	1875	10	0	10	0	0	logfile
✘	3J92	2832	2022-07-08	2014-12-02	3.6	3.74	—	3.7	0.010	1.59	52.0	0.11	21.53	0.01	1.186	15.82	18.87	11.1	85.7	3.2	-3.22	0.79	0.74	0.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	146386	7246	65	4013	593	0	0	logfile

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