Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	4Ci0	2513	2021-06-02	2013-12-05	3.36	3.43	—	3.4	0.014	1.92	24.0	1.74	23.71	0.03	1.915	118.01	39.11	3.4	96.5	0.1	1.78	0.71	0.70	0.31	3.4	0.015	2.75	0.0	0.54	18.75	0.00	1.361	19.89	0.80	4.9	95.1	0.0	-0.58	2.14	0.82	0.86	1.65	83472	10716	72	0	108	0	0	logfile
✔	3J6B	2566	2021-06-08	2014-01-22	3.2	3.23	—	3.2	0.010	1.18	13.0	0.10	18.54	0.01	0.862	5.65	10.99	6.4	92.0	1.6	-1.19	0.63	0.78	2.15	3.2	0.005	0.67	0.0	0.05	17.46	0.01	1.726	9.01	0.57	5.9	93.8	0.2	0.17	0.81	0.75	0.85	2.39	195137	6712	46	2733	113	0	83818	logfile
✔	3J6E	5895	2021-06-05	2014-02-18	4.7	4.79	—	4.7	0.022	2.60	18.0	0.13	13.27	0.01	1.539	5.49	0.28	3.4	96.2	0.4	-0.68	0.62	0.66	—	4.7	0.003	0.73	0.0	0.04	14.44	0.00	1.906	18.71	0.03	2.8	97.2	0.0	0.58	2.18	0.69	0.80	—	60984	7686	54	0	36	72	0	logfile
✔	3J6F	5896	2021-06-05	2014-02-19	4.9	4.97	—	4.9	0.021	2.65	64.0	0.14	14.01	0.01	2.069	5.60	0.14	3.1	96.3	0.6	-1.05	0.62	0.67	—	4.9	0.003	0.75	0.0	0.05	14.50	0.01	1.913	19.76	0.06	2.7	97.3	0.0	0.44	2.26	0.69	0.81	—	60903	7686	45	9	18	36	0	logfile
✔	3J6J	5925	2021-06-02	2014-03-13	3.64	4.17	—	3.9	0.007	1.41	0.0	0.06	15.90	0.00	1.578	32.19	6.10	4.1	95.0	0.9	-1.46	0.86	0.83	1.23	3.9	0.006	1.14	0.0	0.05	17.79	0.01	1.997	27.23	1.74	3.9	95.9	0.1	-0.30	1.81	0.88	0.88	1.96	6344	776	8	0	0	0	0	logfile
✔	3J6Q	5926	2021-06-04	2014-03-20	3.8	4.07	—	4.1	0.010	1.13	0.0	0.06	11.65	0.01	1.279	18.44	0.64	11.7	84.1	4.2	-4.60	0.46	0.59	1.31	4.0	0.003	0.85	0.0	0.05	15.38	0.01	2.110	11.31	0.42	10.3	89.0	0.6	-2.73	2.93	0.55	0.74	1.56	42575	5300	10	0	0	0	0	logfile
✔	4V91	2599	2021-06-05	2014-03-21	3.7	3.84	—	3.8	0.133	4.77	525.0	0.43	20.66	0.07	0.695	19.16	12.79	15.8	74.0	10.2	-5.88	0.33	0.36	0.15	3.8	0.040	1.52	0.0	0.04	17.34	0.02	2.038	15.93	0.97	9.5	89.4	1.1	-2.61	1.97	0.63	0.82	1.61	125665	6450	45	3482	0	0	0	logfile
✔	3J79	2660	2021-06-05	2014-06-02	3.2	3.25	3.13	3.2	0.007	1.31	43.0	0.10	19.59	0.01	1.505	4.37	11.66	7.2	90.4	2.4	-1.45	0.53	0.70	0.94	3.2	0.005	0.71	0.0	0.04	17.99	0.01	1.880	14.19	0.89	6.4	93.1	0.5	-0.47	1.00	0.66	0.85	1.81	124514	6244	55	3460	168	0	0	logfile
✔	3J7A	2660	2021-06-01	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.40	49.0	0.10	19.80	0.01	1.715	4.44	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.003	0.68	0.0	0.04	18.17	0.01	1.935	16.40	0.97	8.5	90.3	1.2	-1.86	2.70	0.40	0.78	0.99	68866	4106	35	1682	69	0	0	logfile
✔	4UQ8	2676	2021-06-03	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.51	0.0	0.41	5.93	0.00	2.133	43.42	0.00	0.0	0.0	0.0	—	2.30	0.62	0.84	—	28647	33	54	0	5686	0	0	logfile
✔	3J7H	5995	2021-06-04	2014-06-30	3.2	2.58	3.45	3.4	0.005	1.16	0.0	0.06	17.98	0.01	1.085	130.49	12.24	2.5	97.4	0.2	2.39	0.77	0.79	2.04	3.4	0.006	0.78	0.0	0.05	17.63	0.01	2.040	14.08	0.54	3.8	96.2	0.0	-0.16	1.64	0.80	0.87	2.74	32828	4088	8	0	4	0	0	logfile
✔	3J7L	6000	2021-06-03	2014-07-18	3.8	3.16	—	3.8	0.010	1.33	0.0	0.06	10.57	0.01	2.009	21.67	0.27	5.3	92.1	2.5	-0.59	0.69	0.78	2.14	3.3	0.006	0.87	0.0	0.05	17.35	0.01	2.106	13.23	1.71	7.5	91.8	0.7	-1.15	1.00	0.72	0.81	1.91	216780	28620	180	0	0	0	0	logfile
✔	3J7N	6000	2021-06-03	2014-07-18	3.8	3.16	—	3.9	0.014	1.65	120.0	0.11	11.81	0.01	0.277	35.08	1.88	11.4	85.9	2.8	-1.51	0.73	0.78	2.08	3.3	0.038	1.05	2.0	0.05	17.81	0.01	1.720	21.57	1.51	8.9	89.9	1.1	-1.71	1.56	0.71	0.79	1.58	217080	28680	180	0	0	0	0	logfile
✔	3J7M	6000	2021-06-03	2014-07-18	3.8	3.16	—	3.9	0.014	1.63	0.0	0.11	11.98	0.01	0.337	30.08	1.61	12.4	85.4	2.2	-1.80	0.73	0.78	2.06	3.3	0.017	0.93	0.0	0.05	17.32	0.01	1.406	16.67	1.60	9.5	90.0	0.5	-2.29	1.59	0.72	0.80	1.74	217080	28680	180	0	0	0	0	logfile
✔	3J7Y	2762	2021-06-03	2014-08-26	3.4	3.45	—	3.4	0.008	1.34	31.0	0.10	19.93	0.01	1.708	8.53	8.93	7.9	89.9	2.2	-1.78	0.72	0.83	2.09	3.4	0.004	0.74	0.0	0.04	18.53	0.01	1.925	11.76	0.41	6.9	92.5	0.6	-0.18	1.57	0.75	0.84	1.85	94121	7469	56	1530	208	0	0	logfile
✔	3J7Z	6057	2021-06-03	2014-08-27	3.9	3.80	—	3.9	0.009	1.42	5.0	0.10	15.55	0.01	1.426	11.23	10.91	16.3	77.2	6.5	-5.00	0.75	0.70	0.71	3.8	0.008	0.99	0.0	0.05	16.73	0.01	1.963	20.91	1.76	15.8	82.3	1.9	-3.45	1.93	0.80	0.82	0.93	90700	3453	36	2975	1	0	0	logfile
✘	3J80	2764	2021-06-02	2014-08-28	3.75	3.87	3.84	3.8	0.007	1.36	43.0	0.11	22.30	0.01	1.747	9.30	13.53	12.2	83.2	4.6	-2.33	0.79	0.86	0.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77716	5039	41	1779	70	0	0	logfile
✔	3J81	2763	2021-06-02	2014-08-29	4.0	4.19	—	4.0	0.007	1.30	64.0	0.10	22.05	0.01	1.076	7.64	12.47	11.6	83.5	4.9	-2.31	0.79	0.84	—	4.0	0.005	0.85	0.0	0.04	20.82	0.01	1.854	28.42	0.98	12.1	86.4	1.4	-1.99	2.12	0.79	0.82	—	83760	5686	48	1876	84	0	0	logfile
✔	4UY8	2773	2021-06-03	2014-08-29	3.8	4.07	—	4.1	0.010	1.50	8.0	0.07	15.49	0.01	0.879	11.91	11.16	16.3	76.9	6.8	-5.04	0.53	0.64	0.36	4.0	0.004	0.65	0.0	0.03	17.29	0.01	1.722	61.16	1.43	16.4	81.5	2.1	-3.26	1.99	0.58	0.80	1.06	92995	3468	47	3049	144	439	8	logfile
✔	4V1A	2787	2021-06-04	2014-09-25	3.4	3.43	—	3.4	0.008	1.29	0.0	0.05	13.81	0.01	2.067	12.04	6.03	4.6	95.3	0.1	-2.62	0.37	0.78	1.69	3.4	0.003	0.69	0.0	0.04	17.01	0.01	2.110	10.03	0.29	4.5	95.4	0.1	0.52	1.95	0.38	0.80	1.75	31917	3843	24	0	94	0	0	logfile

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