The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3J6E | 5895 | 2022-04-05 | 2014-02-18 | 4.7 | 4.79 | — | 4.7 | 0.021 | 2.60 | 18.0 | 0.13 | 13.25 | 0.01 | 1.539 | 5.54 | 0.28 | 3.4 | 96.2 | 0.4 | -0.68 | 0.62 | 0.66 | — | 4.7 | 0.003 | 0.74 | 0.0 | 0.04 | 14.07 | 0.01 | 1.811 | 20.09 | 0.02 | 2.9 | 97.1 | 0.0 | 0.38 | 2.15 | 0.69 | 0.80 | — | 60984 | 7686 | 54 | 0 | 36 | 72 | 0 | logfile |
✔ | 3J6F | 5896 | 2022-04-05 | 2014-02-19 | 4.9 | 4.97 | — | 4.9 | 0.021 | 2.64 | 64.0 | 0.14 | 14.01 | 0.01 | 2.069 | 5.57 | 0.14 | 3.1 | 96.3 | 0.6 | -1.05 | 0.62 | 0.66 | — | 4.9 | 0.003 | 0.75 | 0.0 | 0.05 | 14.46 | 0.01 | 1.799 | 21.06 | 0.09 | 3.0 | 97.0 | 0.0 | 0.30 | 2.79 | 0.69 | 0.81 | — | 60903 | 7686 | 45 | 9 | 18 | 36 | 0 | logfile |
✔ | 3J6J | 5925 | 2022-04-05 | 2014-03-13 | 3.64 | 4.17 | — | 3.9 | 0.007 | 1.41 | 0.0 | 0.06 | 15.90 | 0.00 | 1.578 | 33.23 | 6.10 | 4.1 | 95.0 | 0.9 | -1.46 | 0.86 | 0.83 | 1.23 | 3.9 | 0.006 | 1.01 | 0.0 | 0.05 | 18.29 | 0.01 | 2.105 | 27.55 | 1.60 | 2.5 | 97.2 | 0.3 | -0.37 | 2.60 | 0.89 | 0.89 | 1.75 | 6344 | 776 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J6Q | 5926 | 2022-04-09 | 2014-03-20 | 3.8 | 4.07 | — | 4.1 | 0.010 | 1.16 | 0.0 | 0.06 | 11.65 | 0.01 | 1.279 | 19.23 | 0.64 | 11.7 | 84.1 | 4.2 | -4.60 | 0.46 | 0.59 | 1.31 | 4.0 | 0.008 | 1.04 | 0.0 | 0.05 | 15.17 | 0.01 | 1.723 | 11.59 | 0.15 | 10.3 | 89.0 | 0.7 | -2.91 | 2.89 | 0.55 | 0.74 | 1.69 | 42575 | 5300 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 4V91 | 2599 | 2022-04-06 | 2014-03-21 | 3.7 | 3.84 | — | 3.8 | 0.133 | 4.77 | 525.0 | 0.43 | 20.66 | 0.07 | 0.695 | 20.11 | 12.79 | 14.1 | 78.2 | 7.8 | -5.39 | 0.33 | 0.36 | 0.15 | 3.8 | 0.029 | 1.21 | 1.0 | 0.04 | 17.29 | 0.01 | 1.610 | 15.97 | 0.15 | 7.8 | 91.4 | 0.8 | -2.72 | 1.86 | 0.61 | 0.79 | 1.30 | 125665 | 6450 | 45 | 3482 | 0 | 0 | 0 | logfile |
✔ | 3J79 | 2660 | 2022-04-06 | 2014-06-02 | 3.2 | 3.25 | 3.13 | 3.2 | 0.007 | 1.31 | 43.0 | 0.10 | 19.59 | 0.01 | 1.505 | 4.40 | 11.66 | 7.2 | 90.4 | 2.4 | -1.45 | 0.53 | 0.71 | 0.94 | 3.2 | 0.004 | 0.70 | 0.0 | 0.04 | 18.11 | 0.01 | 1.858 | 14.37 | 0.88 | 6.3 | 93.2 | 0.5 | -0.57 | 0.96 | 0.65 | 0.85 | 1.92 | 124514 | 6244 | 55 | 3460 | 168 | 0 | 0 | logfile |
✔ | 3J7A | 2660 | 2022-04-06 | 2014-06-03 | 3.2 | 3.24 | 3.33 | 3.2 | 0.008 | 1.39 | 49.0 | 0.10 | 19.81 | 0.01 | 1.715 | 4.55 | 15.41 | 10.5 | 85.4 | 4.2 | -2.49 | 0.31 | 0.55 | -0.02 | 3.2 | 0.004 | 0.74 | 0.0 | 0.04 | 18.16 | 0.01 | 1.853 | 17.45 | 0.94 | 8.9 | 89.8 | 1.2 | -1.90 | 2.71 | 0.39 | 0.76 | 1.01 | 68866 | 4106 | 35 | 1682 | 69 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2022-04-07 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 64.12 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.54 | 0.0 | 0.41 | 5.50 | 0.00 | 2.100 | 23.02 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.11 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✔ | 3J7H | 5995 | 2022-04-08 | 2014-06-30 | 3.2 | 2.58 | 3.45 | 3.4 | 0.005 | 1.17 | 0.0 | 0.06 | 17.98 | 0.01 | 1.085 | 132.45 | 12.24 | 2.5 | 97.4 | 0.2 | 2.39 | 0.77 | 0.79 | 2.04 | 3.4 | 0.006 | 0.81 | 0.0 | 0.04 | 17.49 | 0.01 | 2.005 | 14.54 | 0.77 | 3.8 | 96.2 | 0.0 | 0.02 | 1.65 | 0.80 | 0.87 | 2.54 | 32828 | 4088 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 3J7M | 6000 | 2022-04-21 | 2014-07-18 | 3.8 | 3.16 | — | 3.9 | 0.014 | 1.63 | 0.0 | 0.11 | 11.98 | 0.01 | 0.337 | 30.57 | 1.61 | 12.4 | 85.4 | 2.2 | -1.80 | 0.73 | 0.78 | 2.06 | 3.3 | 0.040 | 1.15 | 0.0 | 0.05 | 17.36 | 0.01 | 1.443 | 22.06 | 2.16 | 9.0 | 90.4 | 0.6 | -2.31 | 1.58 | 0.71 | 0.78 | 1.70 | 217080 | 28680 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J7L | 6000 | 2022-04-20 | 2014-07-18 | 3.8 | 3.16 | — | 3.8 | 0.010 | 1.33 | 0.0 | 0.06 | 10.57 | 0.01 | 2.009 | 21.85 | 0.27 | 5.3 | 92.1 | 2.5 | -0.59 | 0.69 | 0.78 | 2.14 | 3.3 | 0.004 | 0.82 | 0.0 | 0.05 | 16.88 | 0.01 | 2.112 | 13.14 | 1.00 | 4.9 | 94.5 | 0.6 | -0.52 | 1.00 | 0.71 | 0.78 | 1.79 | 216780 | 28620 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J7N | 6000 | 2022-04-21 | 2014-07-18 | 3.8 | 3.16 | — | 3.9 | 0.014 | 1.65 | 120.0 | 0.11 | 11.81 | 0.01 | 0.277 | 35.58 | 1.88 | 11.4 | 85.9 | 2.8 | -1.51 | 0.73 | 0.78 | 2.08 | 3.4 | 0.036 | 0.95 | 1.0 | 0.05 | 17.74 | 0.01 | 1.559 | 22.24 | 0.73 | 6.0 | 92.8 | 1.2 | -1.55 | 1.79 | 0.71 | 0.78 | 1.37 | 217080 | 28680 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J7Y | 2762 | 2022-04-08 | 2014-08-26 | 3.4 | 3.45 | — | 3.4 | 0.008 | 1.34 | 31.0 | 0.10 | 19.93 | 0.01 | 1.708 | 8.60 | 8.93 | 7.9 | 89.9 | 2.2 | -1.78 | 0.72 | 0.83 | 2.09 | 3.4 | 0.004 | 0.77 | 0.0 | 0.04 | 18.54 | 0.01 | 1.526 | 12.29 | 0.27 | 6.8 | 92.6 | 0.6 | -0.20 | 3.10 | 0.73 | 0.83 | 2.01 | 94121 | 7469 | 56 | 1530 | 208 | 0 | 0 | logfile |
✔ | 3J7Z | 6057 | 2022-04-08 | 2014-08-27 | 3.9 | 3.80 | — | 3.9 | 0.009 | 1.42 | 5.0 | 0.10 | 15.56 | 0.01 | 1.426 | 11.65 | 10.91 | 16.3 | 77.2 | 6.5 | -5.00 | 0.75 | 0.70 | 0.71 | 3.8 | 0.006 | 0.81 | 1.0 | 0.05 | 15.74 | 0.01 | 1.573 | 16.80 | 0.32 | 12.7 | 85.3 | 2.0 | -3.35 | 1.78 | 0.79 | 0.80 | 0.92 | 90700 | 3453 | 36 | 2975 | 1 | 0 | 0 | logfile |
✔ | 3J80 | 2764 | 2022-04-07 | 2014-08-28 | 3.75 | 3.87 | 3.84 | 3.8 | 0.007 | 1.36 | 43.0 | 0.11 | 22.30 | 0.01 | 1.747 | 9.35 | 13.53 | 12.2 | 83.2 | 4.6 | -2.33 | 0.79 | 0.86 | 0.90 | 3.7 | 0.007 | 0.87 | 1.0 | 0.04 | 20.61 | 0.01 | 1.505 | 24.57 | 0.42 | 11.5 | 87.0 | 1.5 | -1.95 | 1.62 | 0.78 | 0.82 | 0.92 | 77716 | 5039 | 41 | 1779 | 70 | 0 | 0 | logfile |
✔ | 4UY8 | 2773 | 2022-04-08 | 2014-08-29 | 3.8 | 4.07 | — | 4.1 | 0.010 | 1.50 | 8.0 | 0.07 | 15.49 | 0.01 | 0.879 | 12.34 | 11.16 | 16.3 | 76.9 | 6.8 | -5.04 | 0.53 | 0.64 | 0.36 | 4.0 | 0.008 | 0.86 | 1.0 | 0.04 | 17.39 | 0.01 | 1.577 | 71.19 | 0.53 | 18.7 | 79.0 | 2.4 | -3.83 | 1.54 | 0.59 | 0.81 | 0.97 | 92995 | 3468 | 47 | 3049 | 144 | 439 | 8 | logfile |
✔ | 3J81 | 2763 | 2022-04-07 | 2014-08-29 | 4.0 | 4.19 | — | 4.0 | 0.007 | 1.30 | 64.0 | 0.10 | 22.05 | 0.01 | 1.076 | 7.72 | 12.47 | 11.6 | 83.5 | 4.9 | -2.31 | 0.79 | 0.84 | — | 4.0 | 0.005 | 0.84 | 0.0 | 0.04 | 20.82 | 0.01 | 1.749 | 27.61 | 0.98 | 12.1 | 86.4 | 1.5 | -2.01 | 2.08 | 0.79 | 0.82 | — | 83760 | 5686 | 48 | 1876 | 84 | 0 | 0 | logfile |
✔ | 4V1A | 2787 | 2022-04-08 | 2014-09-25 | 3.4 | 3.43 | — | 3.4 | 0.009 | 1.29 | 0.0 | 0.05 | 13.81 | 0.01 | 2.067 | 12.17 | 6.03 | 4.6 | 95.3 | 0.1 | -2.62 | 0.37 | 0.78 | 1.69 | 3.4 | 0.005 | 0.86 | 0.0 | 0.04 | 16.95 | 0.01 | 2.090 | 11.91 | 0.35 | 4.4 | 95.5 | 0.1 | 0.35 | 1.90 | 0.38 | 0.77 | 1.61 | 31917 | 3843 | 24 | 0 | 94 | 0 | 0 | logfile |
✔ | 4V19 | 2787 | 2022-04-06 | 2014-09-25 | 3.4 | 3.44 | — | 3.4 | 0.009 | 1.23 | 0.0 | 0.05 | 20.02 | 0.01 | 1.860 | 9.75 | 6.97 | 3.8 | 96.1 | 0.1 | -2.85 | 0.76 | 0.88 | 2.04 | 3.4 | 0.009 | 0.84 | 1.0 | 0.04 | 19.08 | 0.01 | 1.131 | 8.62 | 0.37 | 4.1 | 95.9 | 0.1 | -0.24 | 1.51 | 0.76 | 0.86 | 2.11 | 69409 | 4361 | 42 | 1583 | 171 | 204 | 0 | logfile |
✔ | 4V1W | 2788 | 2022-04-08 | 2014-10-02 | 4.7 | 4.69 | — | 4.7 | 0.020 | 2.45 | 172.0 | 0.17 | 18.97 | 0.01 | 2.533 | 7.94 | 7.67 | 3.0 | 96.5 | 0.6 | -2.40 | 0.74 | 0.84 | — | 4.6 | 0.004 | 0.98 | 0.0 | 0.05 | 17.69 | 0.01 | 2.092 | 22.73 | 0.00 | 4.8 | 95.2 | 0.0 | 0.73 | 2.78 | 0.72 | 0.76 | — | 32736 | 4080 | 24 | 0 | 0 | 0 | 0 | logfile |