Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J7A	2660	2022-12-14	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.39	49.0	0.10	19.81	0.01	1.715	4.58	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.004	0.75	0.0	0.04	18.09	0.01	1.827	17.88	1.22	9.1	89.6	1.2	-1.88	2.71	0.40	0.78	1.11	68866	4106	35	1682	69	0	0	logfile
✔	4UQ8	2676	2022-12-16	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	67.37	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.50	0.00	2.103	29.65	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	3J7H	5995	2022-12-18	2014-06-30	3.2	2.58	3.45	3.4	0.005	1.17	0.0	0.06	17.98	0.01	1.085	133.11	12.24	2.5	97.4	0.2	2.39	0.77	0.79	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32828	4088	8	0	4	0	0	logfile
✔	3J7Y	2762	2022-12-17	2014-08-26	3.4	3.45	—	3.4	0.008	1.34	31.0	0.10	19.93	0.01	1.708	8.68	8.93	7.9	89.9	2.2	-1.78	0.72	0.83	2.09	3.4	0.004	0.72	0.0	0.04	18.56	0.01	1.867	11.52	0.63	7.0	92.4	0.7	-0.31	3.10	0.74	0.85	1.93	94121	7469	56	1530	208	0	0	logfile
✔	3J7Z	6057	2022-12-16	2014-08-27	3.9	3.80	—	3.9	0.009	1.42	5.0	0.10	15.56	0.01	1.426	11.71	10.91	16.3	77.2	6.5	-5.00	0.75	0.70	0.71	3.8	0.006	0.88	0.0	0.05	15.92	0.01	1.948	18.48	1.83	14.0	83.9	2.1	-3.23	1.86	0.79	0.80	0.90	90700	3453	36	2975	1	0	0	logfile
✔	3J80	2764	2022-12-15	2014-08-28	3.75	3.87	3.84	3.8	0.007	1.36	43.0	0.11	22.30	0.01	1.747	9.38	13.53	12.2	83.2	4.6	-2.33	0.79	0.86	0.90	3.7	0.007	0.90	0.0	0.04	20.59	0.01	1.697	26.67	1.57	12.1	86.4	1.4	-1.94	1.63	0.78	0.82	0.70	77716	5039	41	1779	70	0	0	logfile
✔	3J81	2763	2022-12-16	2014-08-29	4.0	4.19	—	4.0	0.007	1.30	64.0	0.10	22.05	0.01	1.076	7.78	12.47	11.6	83.5	4.9	-2.31	0.79	0.84	—	4.0	0.004	0.79	0.0	0.04	20.74	0.01	1.831	23.36	0.71	11.2	87.4	1.4	-1.88	2.09	0.79	0.82	—	83760	5686	48	1876	84	0	0	logfile
✔	4UY8	2773	2022-12-16	2014-08-29	3.8	4.07	—	4.1	0.010	1.50	8.0	0.07	15.49	0.01	0.879	12.40	11.16	16.3	76.9	6.8	-5.04	0.53	0.64	0.36	4.0	0.004	0.65	0.0	0.03	17.10	0.01	1.501	60.50	1.68	16.8	81.0	2.1	-3.46	1.60	0.58	0.80	1.11	92995	3468	47	3049	144	439	8	logfile
✔	4V1A	2787	2022-12-16	2014-09-25	3.4	3.43	—	3.4	0.009	1.29	0.0	0.05	13.81	0.01	2.067	12.20	6.03	4.6	95.3	0.1	-2.62	0.37	0.78	1.69	3.4	0.003	0.69	0.0	0.04	16.83	0.00	2.076	10.41	0.15	4.3	95.6	0.1	0.54	1.91	0.38	0.78	1.67	31917	3843	24	0	94	0	0	logfile
✔	4V19	2787	2022-12-14	2014-09-25	3.4	3.44	—	3.4	0.009	1.23	0.0	0.05	20.02	0.01	1.860	9.79	6.97	3.8	96.1	0.1	-2.85	0.76	0.88	2.04	3.4	0.004	0.67	0.0	0.04	19.00	0.01	1.117	8.81	0.45	3.9	96.1	0.1	-0.23	2.80	0.76	0.88	2.11	69409	4361	42	1583	171	204	0	logfile
✔	4V1W	2788	2022-12-16	2014-10-02	4.7	4.69	—	4.7	0.020	2.45	172.0	0.17	18.97	0.01	2.533	7.94	7.67	3.0	96.5	0.6	-2.40	0.74	0.84	—	4.6	0.005	0.96	0.0	0.05	15.89	0.01	2.137	30.48	0.00	4.1	95.9	0.0	0.39	2.81	0.74	0.78	—	32736	4080	24	0	0	0	0	logfile
✔	3J89	6123	2022-12-12	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	2.11	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.004	0.56	0.0	0.03	20.77	0.01	2.082	10.42	2.01	1.4	98.6	0.0	2.48	1.98	0.81	0.79	0.26	9025	551	19	0	0	0	4598	logfile
✔	3J8A	6124	2022-12-13	2014-10-08	3.7	3.90	—	3.8	0.006	1.27	0.0	0.05	14.88	0.01	2.145	19.64	6.28	11.2	87.4	1.4	-5.31	0.73	0.80	2.48	3.8	0.004	0.84	0.0	0.05	16.43	0.00	1.925	14.95	1.23	6.4	92.8	0.8	-2.24	1.24	0.72	0.83	1.55	15800	1835	12	0	280	0	0	logfile
✘	3J8i	6179	2022-12-18	2014-11-06	4.7	4.79	—	4.7	0.018	1.67	0.0	0.11	19.47	0.01	2.125	76.34	14.53	6.4	87.5	6.1	-1.59	0.66	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14800	1875	10	0	10	0	0	logfile
✔	3J94	6204	2022-12-14	2014-12-05	4.2	2.69	—	3.1	0.009	1.96	0.0	0.07	15.84	0.01	1.261	31.36	5.87	5.0	93.0	2.0	2.31	0.83	0.77	—	2.7	0.004	0.80	0.0	0.04	13.91	0.01	1.597	17.25	0.00	5.1	94.4	0.6	0.53	2.61	0.85	0.80	—	21509	2895	12	0	11	0	0	logfile
✔	3J9C	6224	2022-12-15	2014-12-25	2.9	3.02	—	3.1	0.005	1.11	0.0	0.05	14.41	0.00	0.248	26.65	6.13	4.8	95.2	0.0	-0.81	0.69	0.79	2.57	3.0	0.006	0.91	3.0	0.05	16.54	0.01	1.702	20.56	3.00	4.6	95.3	0.1	0.04	0.99	0.72	0.84	2.98	26624	3384	8	0	16	0	0	logfile
✔	3J9D	6239	2022-12-11	2015-01-09	3.3	2.70	—	3.4	0.027	2.04	0.0	0.08	20.57	0.01	2.034	23.82	24.92	8.2	89.6	2.2	-3.64	0.81	0.89	2.90	3.3	0.022	0.87	0.0	0.05	17.66	0.00	2.179	16.10	0.45	8.5	90.8	0.7	-1.64	1.60	0.75	0.85	3.08	6086	746	1	0	1	0	0	logfile
✔	3J9E	6240	2022-12-11	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	21.30	24.26	9.8	87.3	2.9	-3.41	0.77	0.88	3.26	3.3	0.004	0.86	0.0	0.04	17.74	0.00	2.228	10.46	0.46	7.4	91.7	1.0	0.84	1.22	0.74	0.86	3.56	4098	520	1	0	0	0	0	logfile
✔	5AEY	2850	2022-12-12	2015-01-12	4.3	4.01	—	4.0	0.011	1.71	35.0	0.11	21.88	0.01	2.197	7.21	18.45	8.7	88.5	2.8	-3.27	0.64	0.81	—	3.9	0.003	0.77	0.0	0.04	15.79	0.00	2.134	13.90	0.00	9.5	90.2	0.3	-1.59	2.15	0.63	0.76	—	12675	1590	10	0	5	0	0	logfile
✔	3J9J	5778	2022-12-14	2015-02-02	3.275	3.52	3.19	3.6	0.015	1.08	0.0	0.09	9.35	0.01	2.266	2.70	0.00	3.3	94.5	2.2	-0.65	0.53	0.57	2.57	3.5	0.003	0.65	0.0	0.04	15.80	0.00	1.905	14.19	0.17	6.7	92.7	0.6	2.30	3.87	0.59	0.76	1.97	21068	1260	4	0	0	0	10624	logfile

• ← previous
• Page 2 of 443
• next →