Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SSX	10307	2022-11-29	2019-09-09	2.98	3.11	—	3.1	0.008	0.94	0.0	0.07	14.94	0.00	2.424	6.14	4.26	12.6	87.4	0.0	-4.73	0.65	0.82	4.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4900	730	10	0	0	0	0	logfile
✔	6UES	20755	2022-11-29	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	6UET	20756	2022-11-29	2019-09-23	4.1	4.91	—	5.1	0.010	1.61	0.0	0.07	15.67	0.02	1.977	4.88	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.96	0.0	0.05	22.24	0.01	1.829	50.36	0.00	0.0	0.0	0.0	—	0.76	0.66	0.81	—	3869	0	1	119	1	0	1291	logfile
✔	6UFR	20759	2022-11-29	2019-09-24	2.5	2.80	—	2.8	0.012	0.96	0.0	0.07	13.71	0.01	2.209	5.48	0.00	6.6	93.4	0.0	-1.99	0.50	0.87	5.55	2.8	0.004	0.63	0.0	0.06	17.00	0.00	2.402	2.46	2.95	4.8	95.2	0.0	-0.87	0.98	0.53	0.89	5.06	4420	630	20	0	0	90	0	logfile
✔	6UKJ	20806	2022-11-29	2019-10-05	3.3	3.53	3.32	3.4	0.007	0.91	0.0	0.05	13.71	0.01	2.114	6.29	0.79	4.5	95.1	0.3	-3.21	0.62	0.81	3.08	3.4	0.003	0.64	0.0	0.04	16.04	0.00	2.145	11.17	0.20	3.8	96.2	0.0	0.14	1.54	0.64	0.83	2.29	4625	582	4	0	1	0	0	logfile
✔	6UKN	20807	2022-11-29	2019-10-05	3.65	3.85	—	3.8	0.005	0.78	0.0	0.05	14.79	0.01	2.280	4.10	0.47	7.7	92.3	0.0	-2.59	0.70	0.82	2.20	3.9	0.003	0.75	0.0	0.05	16.57	0.00	2.206	8.57	0.93	7.5	92.5	0.0	0.32	1.29	0.69	0.81	1.16	4109	536	4	0	8	0	0	logfile
✔	6L4S	0833	2022-11-29	2019-10-21	3.37	3.47	—	4.0	0.014	1.36	0.0	0.09	10.28	0.01	2.408	7.28	0.00	5.7	94.3	0.0	-3.73	0.28	0.67	4.12	4.1	0.008	0.87	0.0	0.06	15.50	0.00	2.214	12.64	0.44	14.5	85.5	0.0	-3.63	3.12	0.35	0.75	2.16	2268	330	6	0	0	0	0	logfile
✔	6UUR	20900	2022-11-29	2019-10-31	3.5	3.51	—	3.6	0.004	0.76	0.0	0.05	15.65	0.00	2.644	8.15	0.00	5.3	94.7	0.0	-4.46	0.56	0.78	3.10	3.7	0.007	0.96	0.0	0.05	16.19	0.00	2.098	14.49	1.20	11.1	88.9	0.0	-4.61	2.23	0.52	0.79	3.03	2770	400	10	0	0	0	0	logfile
✔	6UWF	20922	2022-11-29	2019-11-05	3.08	3.26	—	3.3	0.008	1.08	0.0	0.05	16.40	0.01	2.294	2.14	0.00	3.1	96.9	0.0	-3.86	0.70	0.85	2.48	3.3	0.003	0.57	0.0	0.04	15.17	0.00	2.243	6.88	0.00	3.4	96.6	0.0	1.17	0.32	0.67	0.85	2.48	3178	417	1	0	2	0	0	logfile
✔	6UWL	20923	2022-11-29	2019-11-05	3.62	3.73	—	3.7	0.008	1.16	0.0	0.06	16.05	0.01	2.303	6.24	0.00	7.6	92.2	0.3	-4.71	0.67	0.82	1.71	3.7	0.004	0.77	0.0	0.04	16.09	0.00	2.200	12.65	0.64	6.3	93.7	0.0	-0.08	0.55	0.66	0.81	1.34	3029	402	1	0	1	0	0	logfile
✔	6TGN	10499	2022-11-29	2019-11-17	3.9	3.83	—	4.0	0.010	1.73	0.0	0.12	11.93	0.01	2.161	5.17	1.39	4.7	95.3	0.0	-3.57	0.54	0.90	1.73	4.0	0.004	0.93	0.0	0.04	15.61	0.00	2.436	12.55	0.00	2.3	97.7	0.0	0.20	1.16	0.53	0.82	1.30	672	88	1	0	0	0	0	logfile
✔	6TGP	10500	2022-11-29	2019-11-17	4.4	4.64	—	4.3	0.013	1.90	1.0	0.13	12.88	0.01	2.228	7.38	2.08	5.2	94.8	0.0	-3.36	0.45	0.85	—	4.1	0.005	0.79	0.0	0.04	12.86	0.00	2.270	20.30	0.00	5.2	94.8	0.0	0.17	1.84	0.44	0.79	—	1344	176	2	0	0	0	0	logfile
✔	6TJo	10512	2022-11-29	2019-11-26	3.2	3.43	2.57	3.5	0.013	1.18	0.0	0.07	9.67	0.01	2.394	2.80	0.00	12.7	87.3	0.0	-4.63	0.36	0.76	4.64	3.5	0.006	0.88	0.0	0.05	13.23	0.00	2.284	10.02	0.35	11.1	88.9	0.0	-3.87	1.40	0.36	0.79	3.90	2439	321	3	0	0	0	0	logfile
✘	6V4D	21040	2022-11-29	2019-11-27	3.8	4.13	—	4.1	0.007	0.90	0.0	0.06	13.63	0.01	1.752	21.75	1.35	7.0	93.0	0.0	-3.84	0.49	0.80	2.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3095	422	1	0	0	0	0	logfile
✔	6TJX	10514	2022-11-29	2019-11-27	3.0	3.21	2.52	3.4	0.011	1.10	0.0	0.07	9.93	0.01	2.312	4.11	0.00	4.8	95.2	0.0	-3.93	0.43	0.79	4.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4878	642	6	0	0	0	0	logfile
✔	6V6C	21068	2022-11-29	2019-12-04	4.5	4.50	—	4.4	0.003	0.55	0.0	0.04	13.78	0.00	2.226	7.10	0.00	5.1	94.9	0.0	-4.56	0.42	0.82	—	4.4	0.003	0.68	0.0	0.04	14.20	0.00	2.206	6.97	0.23	4.5	95.5	0.0	-0.11	2.04	0.42	0.81	—	4007	497	1	0	0	0	0	logfile
✔	6V5V	21054	2022-11-29	2019-12-04	3.8	4.01	—	3.9	0.003	0.51	0.0	0.04	13.58	0.00	2.212	6.41	0.00	4.6	95.4	0.0	-2.04	0.52	0.83	2.06	3.9	0.002	0.54	0.0	0.04	14.64	0.00	2.192	8.26	0.30	3.2	96.8	0.0	0.28	0.57	0.53	0.82	1.76	2979	369	1	1	0	0	0	logfile
✔	6VAB	21135	2022-11-29	2019-12-17	4.9	6.51	—	6.8	0.005	0.91	0.0	0.06	8.70	0.01	2.264	14.98	0.00	6.8	93.2	0.0	-3.84	0.71	0.69	—	6.6	0.003	0.67	0.0	0.04	4.71	0.00	2.164	6.82	0.00	6.6	93.4	0.0	-0.11	1.92	0.73	0.69	—	4642	938	4	0	0	0	0	logfile
✔	6LNi	0931	2022-11-29	2019-12-30	2.702	2.94	—	2.9	0.004	0.55	0.0	0.04	14.81	0.00	2.200	10.98	0.00	12.6	87.4	0.0	-6.05	0.48	0.82	5.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4920	600	10	0	0	0	0	logfile
✔	6VHA	21201	2022-11-29	2020-01-09	4.3	4.35	—	7.8	0.007	1.02	0.0	0.05	15.14	0.01	2.319	26.84	2.13	12.4	87.6	0.0	-4.78	0.55	0.54	—	4.1	0.004	0.75	0.0	0.05	13.16	0.00	2.339	14.02	0.00	9.8	90.2	0.0	-4.32	3.38	0.57	0.60	—	2439	321	3	0	0	0	0	logfile

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