Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5G2Y	3332	2023-02-20	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.02	0.0	0.05	23.60	0.01	1.933	73.59	0.00	0.0	0.0	0.0	—	2.96	0.89	0.78	—	13494	0	1	630	0	0	0	logfile
✔	5G2X	3331	2023-02-22	2016-04-16	3.8	3.49	—	3.4	0.001	0.31	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.004	0.76	0.0	0.03	18.97	0.00	2.000	29.45	0.91	18.5	80.5	1.1	-5.04	2.32	0.80	0.65	0.86	19072	487	3	704	0	0	0	logfile
✔	5JLF	8162	2023-02-21	2016-04-27	3.6	3.99	—	3.7	0.013	1.58	17.0	0.11	12.26	0.01	2.184	9.01	1.29	2.9	96.6	0.6	-0.70	0.67	0.69	2.49	3.7	0.005	0.78	0.0	0.04	15.12	0.00	1.912	15.75	0.91	4.2	95.5	0.3	-0.11	1.42	0.70	0.75	1.94	15800	1835	12	0	280	0	0	logfile
✔	5JLF	8163	2023-02-21	2016-04-27	3.6	3.82	—	3.7	0.013	1.58	17.0	0.11	12.26	0.01	2.184	9.01	1.29	2.9	96.6	0.6	-0.70	0.64	0.74	2.52	3.7	0.003	0.72	0.0	0.04	15.21	0.00	1.982	12.28	0.52	3.4	96.3	0.3	0.12	1.43	0.68	0.83	1.85	15800	1835	12	0	280	0	0	logfile
✔	3JD8	6640	2023-02-19	2016-05-01	4.43	4.58	—	4.4	0.015	1.54	5.0	0.13	16.74	0.02	1.335	78.07	11.82	11.9	79.7	8.4	-3.27	0.54	0.62	—	4.4	0.004	0.87	0.0	0.05	12.42	0.00	2.050	18.43	0.00	8.4	90.7	0.9	-0.63	1.77	0.57	0.72	—	8050	1133	7	0	25	0	0	logfile
✔	5K10	8192	2023-02-20	2016-05-17	3.8	4.74	—	3.8	0.009	0.93	0.0	0.06	12.22	0.02	2.138	33.42	0.30	6.9	92.6	0.5	-4.07	0.80	0.57	0.98	3.8	0.004	0.84	0.0	0.04	16.04	0.00	2.197	24.45	0.15	3.7	96.0	0.3	-0.14	1.89	0.92	0.86	1.02	6338	794	4	0	2	0	0	logfile
✔	5K0Z	8191	2023-02-19	2016-05-17	2.8	4.15	—	2.8	0.011	1.04	0.0	0.06	10.64	0.01	2.056	18.30	0.00	2.9	97.1	0.0	-4.11	0.73	0.58	1.27	3.1	0.005	1.15	0.0	0.06	17.03	0.01	2.099	33.56	4.91	4.5	95.5	0.0	-0.35	1.52	0.87	0.84	1.07	9749	1268	8	0	0	41	0	logfile
✔	5K11	8193	2023-02-20	2016-05-17	3.8	4.50	—	3.8	0.012	1.23	0.0	0.06	12.12	0.01	2.061	29.22	0.30	6.1	93.4	0.5	-4.89	0.80	0.59	1.53	3.8	0.004	0.88	0.0	0.05	15.49	0.00	2.139	21.59	0.15	4.5	95.5	0.0	-0.28	1.64	0.90	0.84	1.22	6338	794	4	0	2	0	0	logfile
✔	5K12	8194	2023-02-21	2016-05-17	1.8	2.40	—	2.8	0.008	0.97	0.0	0.06	10.27	0.01	2.051	19.79	0.82	3.8	96.2	0.0	-2.53	0.66	0.74	5.80	2.8	0.003	0.56	0.0	0.04	15.71	0.01	2.213	9.95	0.27	1.9	98.1	0.0	2.18	0.90	0.71	0.89	3.52	14856	1764	12	0	0	1086	0	logfile
✔	5K7L	8215	2023-02-25	2016-05-26	3.78	6.37	—	3.6	0.008	1.37	20.0	0.07	13.26	0.00	2.315	9.11	0.35	7.3	92.6	0.1	-0.20	0.75	0.79	1.04	3.6	0.004	0.71	0.0	0.04	13.74	0.00	2.157	12.41	0.26	4.1	95.9	0.0	1.42	2.35	0.75	0.81	0.73	24696	3372	12	0	8	0	0	logfile
✔	5L93	4015	2023-02-27	2016-06-09	3.9	4.05	—	4.1	0.004	0.92	0.0	0.04	8.71	0.00	1.566	7.24	0.00	9.8	90.2	0.0	-2.97	0.53	0.75	1.23	4.0	0.005	0.81	0.0	0.04	16.84	0.01	2.157	12.97	1.07	7.0	92.8	0.2	0.15	1.71	0.57	0.82	1.41	31212	4032	18	0	0	0	0	logfile
✔	5KEL	8240	2023-02-23	2016-06-09	4.3	4.47	—	4.3	0.014	1.80	0.0	0.10	11.20	0.01	1.763	12.56	0.45	3.4	95.3	1.3	1.64	0.78	0.75	—	4.3	0.004	0.85	0.0	0.05	13.02	0.01	2.008	20.65	0.00	8.4	91.2	0.4	-0.97	1.07	0.80	0.81	—	19278	2409	33	0	45	0	0	logfile
✔	5KEN	8242	2023-02-22	2016-06-09	4.3	6.36	5.67	5.5	0.014	1.81	4.0	0.19	11.62	0.01	1.282	7.71	0.22	2.9	95.6	1.4	1.45	0.82	0.71	—	5.5	0.005	0.85	0.0	0.05	13.31	0.01	1.946	40.90	0.00	9.8	89.5	0.7	-1.94	2.78	0.84	0.81	—	16913	2147	24	0	24	0	0	logfile
✔	5KGF	8246	2023-02-21	2016-06-13	4.54	4.64	—	4.5	0.009	1.37	2.0	0.07	27.90	0.01	1.243	27.10	0.12	6.5	93.1	0.4	-4.86	0.79	0.76	—	4.5	0.005	0.74	0.0	0.04	26.39	0.01	2.121	20.23	0.00	7.0	92.8	0.2	-0.78	1.06	0.83	0.84	—	13782	986	14	290	0	0	0	logfile
✔	5LD2	4038	2023-02-24	2016-06-23	3.83	4.18	—	3.9	0.010	1.05	2.0	0.05	13.02	0.01	1.975	17.88	0.25	5.7	94.0	0.2	-3.86	0.88	0.87	2.00	3.9	0.004	0.69	0.0	0.04	15.83	0.00	1.912	12.92	0.12	4.6	95.3	0.1	0.46	0.76	0.87	0.86	1.72	23981	2857	5	51	22	0	0	logfile
✘	5GJW	9515	2023-02-23	2016-07-02	3.9	4.02	—	4.0	0.011	1.50	20.0	0.08	11.50	0.01	1.844	12.82	1.50	12.8	85.5	1.7	-5.28	0.55	0.80	1.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21561	2676	14	0	29	0	0	logfile
✘	5GJV	9513	2023-02-24	2016-07-02	3.6	3.69	—	3.7	0.013	1.60	32.0	0.08	14.75	0.01	1.695	18.01	4.57	11.6	86.4	2.0	-5.08	0.54	0.79	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21904	2661	14	0	43	0	0	logfile
✔	5KUF	8289	2023-02-24	2016-07-13	3.8	3.80	—	3.7	0.009	1.02	0.0	0.05	8.87	0.01	2.021	29.22	0.08	15.5	84.4	0.1	-5.82	0.61	0.71	1.68	3.7	0.005	0.74	0.0	0.04	13.81	0.00	2.000	17.20	0.23	8.0	92.0	0.0	-1.86	1.56	0.61	0.71	1.37	23728	3000	8	0	4	0	0	logfile
✔	5Li4	4052	2023-02-23	2016-07-14	4.2	5.13	—	4.0	0.053	3.06	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.4	0.004	1.03	0.0	0.05	13.74	0.01	2.093	29.26	0.00	14.4	84.4	1.2	-3.64	4.18	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	5Lii	4053	2023-02-15	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.8	0.003	0.88	0.0	0.04	15.96	0.01	2.201	13.15	1.41	14.6	84.7	0.7	-4.22	0.87	0.56	0.67	1.49	3098	433	1	0	0	0	0	logfile

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