Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	3JAU	6366	2022-07-04	2015-06-24	4.8	4.76	—	5.7	0.027	2.66	660.0	0.16	14.74	0.02	1.686	11.51	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	114900	14700	180	0	0	0	0	logfile
✔	5A63	3061	2022-07-03	2015-06-24	3.4	3.50	3.42	3.5	0.010	1.68	8.0	0.11	19.25	0.01	2.079	39.51	13.74	6.4	91.5	2.1	-0.17	0.36	0.40	2.09	3.5	0.004	0.73	0.0	0.04	17.94	0.00	2.201	12.69	0.57	5.9	93.8	0.3	-0.05	3.23	0.63	0.83	2.03	10003	1223	7	0	22	0	0	logfile
✔	5A6F	3063	2022-07-03	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.7	0.002	0.57	0.0	0.04	10.94	0.00	2.010	10.19	0.00	5.1	94.9	0.0	-1.00	0.99	0.57	0.75	—	8881	540	2	0	43	0	4330	logfile
✔	5A6E	3062	2022-07-03	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.003	0.58	0.0	0.03	10.50	0.00	1.994	10.27	0.00	6.4	93.6	0.0	-0.83	1.50	0.40	0.73	—	11093	634	4	0	182	0	5102	logfile
✘	5A7U	3079	2022-07-02	2015-07-10	4.8	3.82	—	4.6	0.020	3.41	3.0	0.25	21.78	0.08	2.651	30.77	25.00	24.0	72.0	4.0	-6.05	-0.01	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	5A8L	3099	2022-07-03	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	9.01	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.007	0.91	0.0	0.03	16.17	0.01	1.948	15.58	0.38	8.5	90.6	1.0	-1.53	1.40	0.22	0.61	0.47	12264	624	9	347	0	0	0	logfile
✔	5A9Z	6396	2022-07-10	2015-07-23	4.7	4.83	—	4.7	0.013	1.89	26.0	0.14	23.31	0.03	0.000	199.55	29.15	25.1	49.6	25.2	-7.73	0.81	0.65	—	4.7	0.006	1.00	0.0	0.05	19.23	0.01	0.000	40.34	0.22	21.3	76.3	2.3	-4.29	2.90	0.87	0.81	—	150547	6671	58	4527	131	0	0	logfile
✔	3JB6	6408	2022-07-04	2015-08-02	3.3	3.35	—	3.4	0.010	0.90	4.0	0.06	9.55	0.01	2.123	8.54	0.20	2.4	97.4	0.1	-3.72	0.63	0.90	5.02	3.4	0.002	0.58	0.0	0.04	15.06	0.00	2.157	5.94	0.20	1.8	98.2	0.0	0.16	1.19	0.63	0.88	3.71	13904	1731	6	0	2	0	0	logfile
✔	3JB7	6404	2022-07-04	2015-08-03	4.0	4.13	—	4.1	0.007	0.76	3.0	0.05	10.78	0.00	0.793	10.69	1.13	3.9	95.9	0.2	-2.17	0.76	0.85	—	4.1	0.003	0.68	0.0	0.04	15.37	0.00	2.188	10.87	0.66	2.6	97.3	0.1	0.19	0.89	0.78	0.85	—	14176	1733	8	11	3	0	0	logfile
✔	3JB9	6413	2022-07-05	2015-08-09	3.6	3.70	—	3.6	0.010	1.29	13.0	0.07	16.84	0.01	1.253	18.11	8.06	9.1	87.9	3.0	-3.97	0.52	0.51	1.26	3.6	0.007	0.90	2.0	0.04	17.16	0.01	1.525	16.23	0.17	6.3	93.0	0.8	-1.24	0.93	0.56	0.64	1.07	86551	9194	50	328	1328	0	0	logfile
✔	5ACo	3121	2022-07-05	2015-08-17	4.36	4.52	—	4.3	0.012	1.91	3.0	0.11	10.21	0.02	1.986	10.87	0.29	9.1	88.9	1.9	-2.40	0.70	0.68	—	4.3	0.007	0.84	0.0	0.05	11.50	0.00	2.113	15.74	0.05	8.4	91.1	0.6	-1.32	1.61	0.82	0.85	—	21297	2415	18	0	192	0	0	logfile
✔	5ADX	2856	2022-07-08	2015-08-24	4.0	4.18	—	4.0	0.008	1.05	1.0	0.06	12.82	0.00	1.155	3.45	1.97	6.3	93.5	0.3	-2.81	0.77	0.63	—	4.0	0.004	0.70	0.0	0.04	14.93	0.00	2.095	11.54	0.29	5.3	94.6	0.0	-0.47	0.91	0.86	0.79	—	49392	4737	27	0	2569	0	0	logfile
✔	5ADY	3133	2022-07-06	2015-08-25	4.5	4.75	—	4.5	0.011	1.28	0.0	0.06	18.75	0.01	1.391	57.97	0.21	11.7	81.7	6.7	-3.35	0.72	0.63	—	4.5	0.005	0.76	0.0	0.04	17.54	0.01	1.836	30.04	0.00	13.3	85.6	1.1	-3.15	1.12	0.87	0.84	—	97364	4197	35	3020	2	0	0	logfile
✔	5ANB	3146	2022-07-08	2015-09-06	4.1	4.11	—	4.1	0.008	1.31	6.0	0.10	18.54	0.01	1.245	5.13	4.33	13.0	83.9	3.1	-4.17	0.41	0.75	—	4.1	0.007	0.93	0.0	0.04	17.15	0.01	1.065	22.25	0.00	13.2	86.1	0.8	-3.51	0.83	0.39	0.71	—	48493	3025	12	1162	0	0	0	logfile
✔	5ANC	3147	2022-07-07	2015-09-06	4.2	4.23	—	4.2	0.008	1.35	7.0	0.10	19.00	0.01	1.236	6.63	4.21	13.6	82.7	3.6	-4.33	0.41	0.74	—	4.2	0.011	1.13	1.0	0.05	17.44	0.01	1.782	26.46	0.00	15.0	84.0	1.0	-3.96	1.54	0.39	0.70	—	46807	2801	11	1162	0	0	0	logfile
✔	5AN9	3145	2022-07-07	2015-09-06	3.3	3.29	—	3.3	0.007	1.22	5.0	0.10	17.04	0.01	1.192	3.57	2.32	9.1	88.0	2.9	-3.68	0.38	0.81	1.98	3.3	0.006	0.81	0.0	0.04	17.16	0.01	1.867	12.72	0.06	8.9	90.7	0.5	-2.36	0.69	0.39	0.77	1.56	39693	1905	11	1162	0	0	0	logfile
✔	3JBR	6475	2022-07-04	2015-09-29	4.2	4.39	—	4.2	0.008	1.30	0.0	0.06	8.64	0.00	1.419	19.29	0.37	8.1	84.8	7.0	-3.43	0.66	0.70	—	4.2	0.003	0.76	0.0	0.04	11.15	0.00	2.086	14.97	0.09	11.5	86.4	2.1	-0.82	1.54	0.66	0.70	—	16467	2148	6	0	385	0	0	logfile
✔	5FJ9	3179	2022-07-07	2015-10-06	4.6	4.67	—	4.6	0.004	1.21	0.0	0.05	12.45	0.00	1.842	13.11	4.04	16.0	82.8	1.1	-4.61	0.80	0.72	—	4.6	0.004	0.90	0.0	0.05	13.51	0.01	1.849	18.37	0.00	13.0	85.9	1.1	-2.32	2.54	0.83	0.78	—	38680	4845	22	0	41	0	0	logfile
✔	5FJ8	3178	2022-07-07	2015-10-06	3.9	3.97	—	4.0	0.004	1.21	0.0	0.04	13.54	0.00	2.035	13.99	4.05	16.0	82.9	1.1	-4.73	0.70	0.69	0.95	3.9	0.009	1.08	0.0	0.05	17.05	0.01	1.996	17.26	0.33	13.1	85.7	1.2	-2.68	1.47	0.76	0.77	0.99	39284	4804	25	47	41	0	0	logfile
✔	3JBS	6478	2022-07-02	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.004	0.63	0.0	0.04	18.27	0.00	2.222	7.93	3.29	1.7	98.3	0.0	0.83	1.30	0.22	0.81	3.95	1401	175	1	0	0	0	0	logfile

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