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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5G2Y | 3332 | 2023-02-20 | 2016-04-16 | 4.5 | 4.38 | — | 3.8 | 0.001 | 0.22 | 0.0 | 0.01 | 11.90 | 0.00 | 2.269 | 2.32 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.28 | — | 3.7 | 0.007 | 1.02 | 0.0 | 0.05 | 23.60 | 0.01 | 1.933 | 73.59 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.96 | 0.89 | 0.78 | — | 13494 | 0 | 1 | 630 | 0 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2023-02-22 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.31 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.004 | 0.76 | 0.0 | 0.03 | 18.97 | 0.00 | 2.000 | 29.45 | 0.91 | 18.5 | 80.5 | 1.1 | -5.04 | 2.32 | 0.80 | 0.65 | 0.86 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 5JLF | 8162 | 2023-02-21 | 2016-04-27 | 3.6 | 3.99 | — | 3.7 | 0.013 | 1.58 | 17.0 | 0.11 | 12.26 | 0.01 | 2.184 | 9.01 | 1.29 | 2.9 | 96.6 | 0.6 | -0.70 | 0.67 | 0.69 | 2.49 | 3.7 | 0.005 | 0.78 | 0.0 | 0.04 | 15.12 | 0.00 | 1.912 | 15.75 | 0.91 | 4.2 | 95.5 | 0.3 | -0.11 | 1.42 | 0.70 | 0.75 | 1.94 | 15800 | 1835 | 12 | 0 | 280 | 0 | 0 | logfile |
✔ | 5JLF | 8163 | 2023-02-21 | 2016-04-27 | 3.6 | 3.82 | — | 3.7 | 0.013 | 1.58 | 17.0 | 0.11 | 12.26 | 0.01 | 2.184 | 9.01 | 1.29 | 2.9 | 96.6 | 0.6 | -0.70 | 0.64 | 0.74 | 2.52 | 3.7 | 0.003 | 0.72 | 0.0 | 0.04 | 15.21 | 0.00 | 1.982 | 12.28 | 0.52 | 3.4 | 96.3 | 0.3 | 0.12 | 1.43 | 0.68 | 0.83 | 1.85 | 15800 | 1835 | 12 | 0 | 280 | 0 | 0 | logfile |
✔ | 3JD8 | 6640 | 2023-02-19 | 2016-05-01 | 4.43 | 4.58 | — | 4.4 | 0.015 | 1.54 | 5.0 | 0.13 | 16.74 | 0.02 | 1.335 | 78.07 | 11.82 | 11.9 | 79.7 | 8.4 | -3.27 | 0.54 | 0.62 | — | 4.4 | 0.004 | 0.87 | 0.0 | 0.05 | 12.42 | 0.00 | 2.050 | 18.43 | 0.00 | 8.4 | 90.7 | 0.9 | -0.63 | 1.77 | 0.57 | 0.72 | — | 8050 | 1133 | 7 | 0 | 25 | 0 | 0 | logfile |
✔ | 5K10 | 8192 | 2023-02-20 | 2016-05-17 | 3.8 | 4.74 | — | 3.8 | 0.009 | 0.93 | 0.0 | 0.06 | 12.22 | 0.02 | 2.138 | 33.42 | 0.30 | 6.9 | 92.6 | 0.5 | -4.07 | 0.80 | 0.57 | 0.98 | 3.8 | 0.004 | 0.84 | 0.0 | 0.04 | 16.04 | 0.00 | 2.197 | 24.45 | 0.15 | 3.7 | 96.0 | 0.3 | -0.14 | 1.89 | 0.92 | 0.86 | 1.02 | 6338 | 794 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 5K0Z | 8191 | 2023-02-19 | 2016-05-17 | 2.8 | 4.15 | — | 2.8 | 0.011 | 1.04 | 0.0 | 0.06 | 10.64 | 0.01 | 2.056 | 18.30 | 0.00 | 2.9 | 97.1 | 0.0 | -4.11 | 0.73 | 0.58 | 1.27 | 3.1 | 0.005 | 1.15 | 0.0 | 0.06 | 17.03 | 0.01 | 2.099 | 33.56 | 4.91 | 4.5 | 95.5 | 0.0 | -0.35 | 1.52 | 0.87 | 0.84 | 1.07 | 9749 | 1268 | 8 | 0 | 0 | 41 | 0 | logfile |
✔ | 5K11 | 8193 | 2023-02-20 | 2016-05-17 | 3.8 | 4.50 | — | 3.8 | 0.012 | 1.23 | 0.0 | 0.06 | 12.12 | 0.01 | 2.061 | 29.22 | 0.30 | 6.1 | 93.4 | 0.5 | -4.89 | 0.80 | 0.59 | 1.53 | 3.8 | 0.004 | 0.88 | 0.0 | 0.05 | 15.49 | 0.00 | 2.139 | 21.59 | 0.15 | 4.5 | 95.5 | 0.0 | -0.28 | 1.64 | 0.90 | 0.84 | 1.22 | 6338 | 794 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 5K12 | 8194 | 2023-02-21 | 2016-05-17 | 1.8 | 2.40 | — | 2.8 | 0.008 | 0.97 | 0.0 | 0.06 | 10.27 | 0.01 | 2.051 | 19.79 | 0.82 | 3.8 | 96.2 | 0.0 | -2.53 | 0.66 | 0.74 | 5.80 | 2.8 | 0.003 | 0.56 | 0.0 | 0.04 | 15.71 | 0.01 | 2.213 | 9.95 | 0.27 | 1.9 | 98.1 | 0.0 | 2.18 | 0.90 | 0.71 | 0.89 | 3.52 | 14856 | 1764 | 12 | 0 | 0 | 1086 | 0 | logfile |
✔ | 5K7L | 8215 | 2023-02-25 | 2016-05-26 | 3.78 | 6.37 | — | 3.6 | 0.008 | 1.37 | 20.0 | 0.07 | 13.26 | 0.00 | 2.315 | 9.11 | 0.35 | 7.3 | 92.6 | 0.1 | -0.20 | 0.75 | 0.79 | 1.04 | 3.6 | 0.004 | 0.71 | 0.0 | 0.04 | 13.74 | 0.00 | 2.157 | 12.41 | 0.26 | 4.1 | 95.9 | 0.0 | 1.42 | 2.35 | 0.75 | 0.81 | 0.73 | 24696 | 3372 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 5L93 | 4015 | 2023-02-27 | 2016-06-09 | 3.9 | 4.05 | — | 4.1 | 0.004 | 0.92 | 0.0 | 0.04 | 8.71 | 0.00 | 1.566 | 7.24 | 0.00 | 9.8 | 90.2 | 0.0 | -2.97 | 0.53 | 0.75 | 1.23 | 4.0 | 0.005 | 0.81 | 0.0 | 0.04 | 16.84 | 0.01 | 2.157 | 12.97 | 1.07 | 7.0 | 92.8 | 0.2 | 0.15 | 1.71 | 0.57 | 0.82 | 1.41 | 31212 | 4032 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 5KEL | 8240 | 2023-02-23 | 2016-06-09 | 4.3 | 4.47 | — | 4.3 | 0.014 | 1.80 | 0.0 | 0.10 | 11.20 | 0.01 | 1.763 | 12.56 | 0.45 | 3.4 | 95.3 | 1.3 | 1.64 | 0.78 | 0.75 | — | 4.3 | 0.004 | 0.85 | 0.0 | 0.05 | 13.02 | 0.01 | 2.008 | 20.65 | 0.00 | 8.4 | 91.2 | 0.4 | -0.97 | 1.07 | 0.80 | 0.81 | — | 19278 | 2409 | 33 | 0 | 45 | 0 | 0 | logfile |
✔ | 5KEN | 8242 | 2023-02-22 | 2016-06-09 | 4.3 | 6.36 | 5.67 | 5.5 | 0.014 | 1.81 | 4.0 | 0.19 | 11.62 | 0.01 | 1.282 | 7.71 | 0.22 | 2.9 | 95.6 | 1.4 | 1.45 | 0.82 | 0.71 | — | 5.5 | 0.005 | 0.85 | 0.0 | 0.05 | 13.31 | 0.01 | 1.946 | 40.90 | 0.00 | 9.8 | 89.5 | 0.7 | -1.94 | 2.78 | 0.84 | 0.81 | — | 16913 | 2147 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 5KGF | 8246 | 2023-02-21 | 2016-06-13 | 4.54 | 4.64 | — | 4.5 | 0.009 | 1.37 | 2.0 | 0.07 | 27.90 | 0.01 | 1.243 | 27.10 | 0.12 | 6.5 | 93.1 | 0.4 | -4.86 | 0.79 | 0.76 | — | 4.5 | 0.005 | 0.74 | 0.0 | 0.04 | 26.39 | 0.01 | 2.121 | 20.23 | 0.00 | 7.0 | 92.8 | 0.2 | -0.78 | 1.06 | 0.83 | 0.84 | — | 13782 | 986 | 14 | 290 | 0 | 0 | 0 | logfile |
✔ | 5LD2 | 4038 | 2023-02-24 | 2016-06-23 | 3.83 | 4.18 | — | 3.9 | 0.010 | 1.05 | 2.0 | 0.05 | 13.02 | 0.01 | 1.975 | 17.88 | 0.25 | 5.7 | 94.0 | 0.2 | -3.86 | 0.88 | 0.87 | 2.00 | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 15.83 | 0.00 | 1.912 | 12.92 | 0.12 | 4.6 | 95.3 | 0.1 | 0.46 | 0.76 | 0.87 | 0.86 | 1.72 | 23981 | 2857 | 5 | 51 | 22 | 0 | 0 | logfile |
✘ | 5GJW | 9515 | 2023-02-23 | 2016-07-02 | 3.9 | 4.02 | — | 4.0 | 0.011 | 1.50 | 20.0 | 0.08 | 11.50 | 0.01 | 1.844 | 12.82 | 1.50 | 12.8 | 85.5 | 1.7 | -5.28 | 0.55 | 0.80 | 1.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21561 | 2676 | 14 | 0 | 29 | 0 | 0 | logfile |
✘ | 5GJV | 9513 | 2023-02-24 | 2016-07-02 | 3.6 | 3.69 | — | 3.7 | 0.013 | 1.60 | 32.0 | 0.08 | 14.75 | 0.01 | 1.695 | 18.01 | 4.57 | 11.6 | 86.4 | 2.0 | -5.08 | 0.54 | 0.79 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21904 | 2661 | 14 | 0 | 43 | 0 | 0 | logfile |
✔ | 5KUF | 8289 | 2023-02-24 | 2016-07-13 | 3.8 | 3.80 | — | 3.7 | 0.009 | 1.02 | 0.0 | 0.05 | 8.87 | 0.01 | 2.021 | 29.22 | 0.08 | 15.5 | 84.4 | 0.1 | -5.82 | 0.61 | 0.71 | 1.68 | 3.7 | 0.005 | 0.74 | 0.0 | 0.04 | 13.81 | 0.00 | 2.000 | 17.20 | 0.23 | 8.0 | 92.0 | 0.0 | -1.86 | 1.56 | 0.61 | 0.71 | 1.37 | 23728 | 3000 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 5Li4 | 4052 | 2023-02-23 | 2016-07-14 | 4.2 | 5.13 | — | 4.0 | 0.053 | 3.06 | 114.0 | 0.34 | 14.44 | 0.02 | 0.111 | 93.07 | 2.94 | 14.0 | 79.1 | 6.9 | -4.32 | 0.24 | 0.30 | — | 4.4 | 0.004 | 1.03 | 0.0 | 0.05 | 13.74 | 0.01 | 2.093 | 29.26 | 0.00 | 14.4 | 84.4 | 1.2 | -3.64 | 4.18 | 0.34 | 0.58 | — | 20070 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5Lii | 4053 | 2023-02-15 | 2016-07-14 | 3.8 | 2.99 | — | 3.9 | 0.015 | 2.41 | 6.0 | 0.14 | 12.69 | 0.01 | 1.855 | 42.83 | 1.41 | 16.9 | 81.9 | 1.2 | -6.10 | 0.55 | 0.70 | 3.46 | 3.8 | 0.003 | 0.88 | 0.0 | 0.04 | 15.96 | 0.01 | 2.201 | 13.15 | 1.41 | 14.6 | 84.7 | 0.7 | -4.22 | 0.87 | 0.56 | 0.67 | 1.49 | 3098 | 433 | 1 | 0 | 0 | 0 | 0 | logfile |