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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7CKR | 30391 | 2024-04-05 | 2020-07-18 | 3.0 | 3.32 | — | 3.4 | 0.009 | 1.22 | 9.0 | 0.09 | 17.22 | 0.01 | 1.896 | 18.09 | 11.04 | 8.0 | 91.9 | 0.2 | -2.89 | 0.45 | 0.60 | 2.22 | 3.3 | 0.003 | 0.76 | 0.0 | 0.05 | 16.99 | 0.01 | 2.171 | 14.99 | 5.97 | 4.2 | 95.8 | 0.0 | 0.73 | 1.84 | 0.53 | 0.73 | 1.61 | 4094 | 597 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 8EJ5 | 28176 | 2024-04-05 | 2022-09-16 | 4.9 | 4.58 | 4.63 | 4.6 | 0.012 | 1.52 | 1.0 | 0.09 | 12.69 | 0.01 | 2.466 | 13.82 | 3.27 | 2.0 | 97.2 | 0.8 | 1.40 | 0.43 | 0.64 | — | 4.5 | 0.003 | 0.74 | 0.0 | 0.04 | 13.77 | 0.00 | 2.116 | 17.17 | 0.00 | 4.3 | 95.5 | 0.1 | 0.29 | 1.39 | 0.46 | 0.75 | — | 5818 | 727 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JGF | 22325 | 2024-04-05 | 2020-07-19 | 4.69 | 4.81 | — | 4.8 | 0.002 | 0.62 | 0.0 | 0.04 | 13.16 | 0.01 | 2.109 | 26.74 | 0.41 | 4.6 | 95.4 | 0.0 | -0.87 | 0.39 | 0.43 | — | 4.7 | 0.002 | 0.48 | 0.0 | 0.04 | 13.25 | 0.00 | 2.145 | 50.93 | 0.41 | 5.2 | 94.8 | 0.0 | 1.11 | 0.62 | 0.41 | 0.44 | — | 4477 | 532 | 1 | 0 | 0 | 0 | 30 | logfile |
✔ | 7DCQ | 30639 | 2024-04-05 | 2020-10-26 | 2.9 | 3.09 | — | 3.1 | 0.006 | 0.95 | 1.0 | 0.06 | 10.61 | 0.01 | 2.378 | 4.64 | 0.85 | 4.1 | 95.9 | 0.0 | -3.49 | 0.70 | 0.81 | 4.02 | 3.1 | 0.004 | 1.13 | 1.0 | 0.06 | 15.56 | 0.01 | 2.316 | 9.66 | 3.24 | 4.0 | 96.0 | 0.0 | 0.93 | 0.63 | 0.70 | 0.83 | 2.97 | 5197 | 653 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HFC | 34717 | 2024-04-05 | 2022-11-10 | 3.5 | 3.66 | 3.42 | 3.7 | 0.007 | 0.67 | 0.0 | 0.05 | 18.01 | 0.00 | 2.164 | 9.17 | 3.88 | 6.5 | 93.3 | 0.2 | -2.90 | 0.68 | 0.82 | 2.21 | 3.7 | 0.002 | 0.59 | 0.0 | 0.04 | 18.02 | 0.00 | 2.189 | 5.52 | 2.97 | 4.0 | 96.0 | 0.0 | 0.17 | 1.19 | 0.64 | 0.80 | 2.11 | 4007 | 498 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 6UKJ | 20806 | 2024-04-05 | 2019-10-05 | 3.3 | 3.53 | 3.32 | 3.4 | 0.007 | 0.91 | 0.0 | 0.05 | 13.74 | 0.01 | 2.114 | 6.29 | 0.79 | 4.5 | 95.1 | 0.3 | -3.21 | 0.62 | 0.81 | 3.08 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 16.22 | 0.00 | 2.213 | 9.55 | 5.95 | 3.3 | 96.7 | 0.0 | 0.41 | 1.53 | 0.64 | 0.83 | 2.50 | 4625 | 582 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7SAX | 24958 | 2024-04-05 | 2021-09-23 | 3.0 | 2.60 | 2.97 | 3.0 | 0.007 | 0.66 | 0.0 | 0.04 | 13.54 | 0.00 | 2.174 | 5.46 | 0.00 | 3.3 | 96.7 | 0.0 | 1.22 | 0.58 | 0.85 | 2.70 | 2.9 | 0.003 | 0.51 | 0.0 | 0.04 | 17.26 | 0.00 | 2.217 | 6.20 | 3.59 | 2.5 | 97.5 | 0.0 | 3.05 | 0.47 | 0.61 | 0.86 | 1.64 | 5305 | 689 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SK2 | 25170 | 2024-04-05 | 2021-10-19 | 3.82 | 4.03 | — | 3.9 | 0.007 | 1.22 | 0.0 | 0.06 | 13.67 | 0.01 | 2.235 | 8.03 | 0.00 | 4.7 | 95.3 | 0.0 | -2.59 | 0.49 | 0.69 | 1.11 | 3.9 | 0.003 | 0.83 | 0.0 | 0.04 | 16.19 | 0.00 | 2.147 | 19.11 | 4.23 | 4.5 | 95.5 | 0.0 | -0.35 | 0.52 | 0.50 | 0.70 | 1.15 | 4177 | 532 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8E28 | 27828 | 2024-04-05 | 2022-08-14 | 3.1 | 3.26 | 3.15 | 3.2 | 0.004 | 0.83 | 0.0 | 0.05 | 17.29 | 0.01 | 2.316 | 3.83 | 0.00 | 1.5 | 98.5 | 0.0 | -1.72 | 0.75 | 0.85 | 3.17 | 3.2 | 0.002 | 0.47 | 0.0 | 0.04 | 17.85 | 0.00 | 2.221 | 4.97 | 1.98 | 1.5 | 98.5 | 0.0 | 0.22 | 0.71 | 0.76 | 0.87 | 2.93 | 5789 | 690 | 2 | 15 | 0 | 0 | 0 | logfile |
✔ | 8DKW | 27492 | 2024-04-05 | 2022-07-06 | 3.09 | 3.64 | 3.05 | 3.6 | 0.006 | 0.71 | 1.0 | 0.06 | 13.84 | 0.00 | 2.097 | 8.61 | 0.41 | 6.2 | 93.8 | 0.0 | -2.92 | 0.60 | 0.83 | 3.25 | 3.6 | 0.004 | 0.61 | 0.0 | 0.04 | 15.31 | 0.00 | 2.166 | 7.01 | 2.70 | 6.2 | 93.8 | 0.0 | -0.38 | 0.29 | 0.55 | 0.84 | 2.64 | 4370 | 553 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DKM | 27490 | 2024-04-05 | 2022-07-05 | 3.39 | 3.59 | 3.11 | 3.6 | 0.003 | 0.64 | 0.0 | 0.05 | 12.93 | 0.00 | 2.241 | 7.23 | 0.83 | 6.4 | 93.6 | 0.0 | -0.94 | 0.62 | 0.84 | 2.67 | 3.6 | 0.003 | 0.56 | 0.0 | 0.04 | 15.17 | 0.00 | 2.173 | 5.62 | 3.73 | 6.2 | 93.8 | 0.0 | -0.16 | 0.27 | 0.61 | 0.85 | 2.33 | 4383 | 553 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7DCP | 30638 | 2024-04-05 | 2020-10-26 | 3.15 | 2.93 | — | 2.9 | 0.005 | 0.92 | 0.0 | 0.05 | 11.27 | 0.01 | 2.092 | 3.96 | 0.61 | 2.9 | 97.1 | 0.0 | -2.88 | 0.70 | 0.82 | 3.52 | 2.9 | 0.003 | 0.58 | 0.0 | 0.04 | 15.40 | 0.00 | 2.117 | 6.24 | 2.74 | 3.8 | 96.2 | 0.0 | 1.32 | 0.92 | 0.72 | 0.86 | 2.78 | 5868 | 732 | 3 | 0 | 2 | 0 | 0 | logfile |
✔ | 8DKi | 27489 | 2024-04-05 | 2022-07-05 | 3.32 | 3.57 | 3.29 | 3.6 | 0.003 | 0.64 | 0.0 | 0.05 | 13.79 | 0.00 | 2.204 | 9.78 | 0.21 | 4.6 | 95.4 | 0.0 | -0.62 | 0.62 | 0.84 | 2.61 | 3.5 | 0.004 | 0.63 | 0.0 | 0.04 | 15.95 | 0.00 | 2.200 | 11.28 | 2.28 | 7.1 | 92.9 | 0.0 | -0.18 | 0.32 | 0.60 | 0.86 | 2.56 | 4365 | 552 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SGS | 10183 | 2024-04-05 | 2019-08-05 | 3.2 | 3.29 | 3.18 | 3.3 | 0.004 | 0.64 | 0.0 | 0.04 | 13.19 | 0.00 | 2.011 | 5.87 | 0.14 | 2.8 | 97.2 | 0.0 | -3.26 | 0.57 | 0.69 | 0.97 | 3.3 | 0.004 | 0.58 | 0.0 | 0.04 | 15.68 | 0.00 | 1.955 | 6.78 | 1.36 | 2.5 | 97.5 | 0.0 | 1.23 | 2.14 | 0.66 | 0.85 | 2.38 | 54156 | 3528 | 8 | 0 | 0 | 0 | 27338 | logfile |
✔ | 6XLK | 22246 | 2024-04-05 | 2020-06-28 | 3.3 | 3.63 | — | 3.5 | 0.008 | 0.76 | 0.0 | 0.05 | 20.17 | 0.00 | 2.216 | 5.71 | 0.41 | 0.9 | 99.1 | 0.0 | -2.26 | 0.78 | 0.84 | 2.91 | 3.5 | 0.004 | 0.55 | 0.0 | 0.04 | 19.97 | 0.00 | 2.280 | 7.90 | 2.04 | 1.7 | 98.3 | 0.0 | 0.64 | 0.44 | 0.79 | 0.85 | 2.37 | 5456 | 536 | 6 | 46 | 4 | 0 | 0 | logfile |
✔ | 8A9B | 15275 | 2024-04-05 | 2022-06-28 | 4.0 | 4.28 | 3.95 | 4.1 | 0.004 | 0.88 | 0.0 | 0.05 | 14.89 | 0.00 | 2.113 | 20.52 | 0.00 | 14.8 | 84.2 | 1.0 | -3.17 | 0.67 | 0.58 | — | 4.1 | 0.003 | 0.77 | 0.0 | 0.04 | 17.28 | 0.00 | 2.160 | 18.41 | 2.86 | 14.1 | 85.2 | 0.7 | -2.81 | 0.54 | 0.71 | 0.63 | — | 6386 | 809 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WPZ | 32693 | 2024-04-05 | 2022-01-24 | 3.8 | 3.48 | — | 3.6 | 0.013 | 1.41 | 1.0 | 0.11 | 11.15 | 0.01 | 2.431 | 1.73 | 0.74 | 2.2 | 97.4 | 0.4 | -0.13 | 0.75 | 0.74 | 2.80 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 12.91 | 0.00 | 2.208 | 5.00 | 1.49 | 3.1 | 96.9 | 0.0 | 1.47 | 1.39 | 0.79 | 0.80 | 2.30 | 5756 | 787 | 8 | 0 | 15 | 0 | 0 | logfile |
✔ | 7CKo | 30389 | 2024-04-05 | 2020-07-18 | 2.95 | 3.28 | — | 3.3 | 0.012 | 1.32 | 10.0 | 0.13 | 16.62 | 0.01 | 1.964 | 11.96 | 12.88 | 9.1 | 90.8 | 0.2 | -2.69 | 0.47 | 0.62 | 2.15 | 3.3 | 0.003 | 0.80 | 0.0 | 0.04 | 16.17 | 0.01 | 2.083 | 9.99 | 5.83 | 4.6 | 95.4 | 0.0 | -0.33 | 2.23 | 0.48 | 0.70 | 1.95 | 4029 | 591 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7RSQ | 24677 | 2024-04-05 | 2021-08-11 | 3.8 | 4.03 | 3.73 | 4.1 | 0.008 | 0.80 | 0.0 | 0.05 | 12.74 | 0.00 | 2.360 | 4.01 | 2.88 | 3.0 | 97.0 | 0.0 | -0.64 | 0.63 | 0.68 | 1.39 | 4.1 | 0.003 | 0.52 | 0.0 | 0.03 | 15.34 | 0.00 | 2.233 | 2.76 | 0.96 | 2.6 | 97.4 | 0.0 | 2.14 | 1.75 | 0.64 | 0.71 | 1.77 | 3970 | 246 | 1 | 0 | 0 | 0 | 1958 | logfile |
✔ | 7V2o | 31658 | 2024-04-05 | 2021-08-09 | 3.5 | 3.22 | 3.31 | 3.0 | 0.008 | 1.12 | 2.0 | 0.10 | 23.97 | 0.00 | 2.203 | 6.79 | 0.18 | 5.3 | 94.5 | 0.2 | -0.53 | 0.81 | 0.84 | 2.00 | 3.0 | 0.007 | 0.71 | 0.0 | 0.04 | 23.82 | 0.01 | 2.071 | 11.25 | 2.41 | 6.9 | 93.1 | 0.1 | -0.28 | 0.36 | 0.80 | 0.83 | 1.94 | 53005 | 2624 | 24 | 1487 | 2 | 0 | 0 | logfile |