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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6WD3 | 21622 | 2024-03-01 | 2020-03-31 | 3.6 | 3.96 | 3.97 | 3.8 | 0.006 | 0.95 | 0.0 | 0.08 | 22.07 | 0.01 | 1.315 | 11.55 | 0.96 | 12.0 | 86.3 | 1.8 | -4.89 | 0.83 | 0.83 | 1.34 | 3.8 | 0.006 | 0.79 | 0.0 | 0.04 | 23.42 | 0.01 | 1.999 | 26.14 | 7.31 | 11.4 | 88.5 | 0.2 | -2.55 | 1.49 | 0.84 | 0.84 | 0.96 | 153211 | 6408 | 62 | 4811 | 0 | 0 | 0 | logfile |
✔ | 6WDA | 21629 | 2024-03-01 | 2020-03-31 | 3.8 | 4.14 | 4.11 | 3.9 | 0.006 | 0.93 | 0.0 | 0.08 | 22.01 | 0.01 | 1.314 | 10.79 | 0.69 | 10.6 | 87.8 | 1.6 | -4.79 | 0.84 | 0.82 | 0.86 | 3.9 | 0.005 | 0.74 | 0.0 | 0.04 | 23.49 | 0.01 | 2.007 | 25.67 | 6.64 | 10.7 | 89.2 | 0.1 | -2.40 | 0.71 | 0.86 | 0.83 | 0.58 | 152933 | 6373 | 62 | 4811 | 0 | 0 | 0 | logfile |
✔ | 6WD5 | 21624 | 2024-03-01 | 2020-03-31 | 3.6 | 3.95 | 3.98 | 3.8 | 0.006 | 0.94 | 0.0 | 0.08 | 22.09 | 0.01 | 1.312 | 11.60 | 0.77 | 11.6 | 86.5 | 2.0 | -4.87 | 0.83 | 0.83 | 1.21 | 3.8 | 0.004 | 0.70 | 0.0 | 0.04 | 23.38 | 0.00 | 2.034 | 21.44 | 6.80 | 10.9 | 89.0 | 0.2 | -2.50 | 0.66 | 0.84 | 0.84 | 0.86 | 153135 | 6400 | 62 | 4811 | 0 | 0 | 0 | logfile |
✔ | 7MSC | 23961 | 2024-03-01 | 2021-05-11 | 2.97 | 2.46 | — | 2.9 | 0.009 | 0.88 | 0.0 | 0.05 | 22.15 | 0.01 | 2.009 | 2.25 | 0.12 | 6.9 | 92.9 | 0.2 | -4.68 | 0.85 | 0.87 | 4.04 | 2.9 | 0.009 | 0.75 | 0.0 | 0.04 | 22.31 | 0.01 | 1.767 | 5.50 | 3.63 | 6.7 | 93.1 | 0.2 | -1.54 | 0.40 | 0.85 | 0.88 | 2.99 | 152447 | 6179 | 69 | 4836 | 453 | 0 | 0 | logfile |
✔ | 6WD6 | 21625 | 2024-03-01 | 2020-03-31 | 3.7 | 4.07 | 4.15 | 3.9 | 0.006 | 0.94 | 0.0 | 0.08 | 22.03 | 0.01 | 1.316 | 11.51 | 0.71 | 11.1 | 87.3 | 1.6 | -4.98 | 0.83 | 0.82 | 0.92 | 3.9 | 0.005 | 0.74 | 0.0 | 0.04 | 23.46 | 0.01 | 2.049 | 24.55 | 6.10 | 10.4 | 89.4 | 0.2 | -2.60 | 1.49 | 0.84 | 0.83 | 0.78 | 153103 | 6396 | 62 | 4811 | 0 | 0 | 0 | logfile |
✔ | 6WD9 | 21628 | 2024-03-01 | 2020-03-31 | 3.7 | 4.05 | 4.07 | 3.9 | 0.006 | 0.94 | 0.0 | 0.08 | 22.07 | 0.01 | 1.313 | 11.26 | 0.54 | 10.7 | 87.6 | 1.7 | -4.88 | 0.83 | 0.82 | 1.03 | 3.9 | 0.006 | 0.78 | 0.0 | 0.04 | 23.53 | 0.01 | 1.976 | 26.89 | 6.96 | 11.6 | 88.2 | 0.2 | -2.51 | 0.70 | 0.85 | 0.83 | 0.69 | 152927 | 6371 | 62 | 4811 | 0 | 0 | 0 | logfile |
✔ | 6DNC | 7970 | 2024-03-01 | 2018-06-06 | 3.7 | 6.35 | — | 4.1 | 0.008 | 1.14 | 2.0 | 0.09 | 22.18 | 0.01 | 1.764 | 6.82 | 1.11 | 13.5 | 84.5 | 2.0 | -4.52 | 0.87 | 0.73 | 0.26 | 4.1 | 0.006 | 0.77 | 0.0 | 0.04 | 23.73 | 0.01 | 1.921 | 38.39 | 2.65 | 10.6 | 89.3 | 0.1 | -1.80 | 3.09 | 0.96 | 0.91 | 0.33 | 152438 | 6520 | 59 | 4735 | 0 | 0 | 0 | logfile |
✔ | 5ZEP | 6921 | 2024-03-01 | 2018-02-27 | 3.4 | 5.11 | — | 4.5 | 0.010 | 1.18 | 5.0 | 0.06 | 24.04 | 0.01 | 1.089 | 21.16 | 3.06 | 8.5 | 90.3 | 1.3 | -3.96 | 0.70 | 0.53 | 0.11 | 4.5 | 0.006 | 0.79 | 2.0 | 0.04 | 24.61 | 0.01 | 1.879 | 28.60 | 4.65 | 7.3 | 92.5 | 0.2 | -1.56 | 1.66 | 0.90 | 0.86 | 0.20 | 152451 | 6193 | 58 | 4802 | 262 | 0 | 0 | logfile |
✔ | 8FR8 | 29397 | 2024-03-01 | 2023-01-06 | 2.76 | 3.17 | 2.71 | 2.8 | 0.011 | 0.89 | 4.0 | 0.06 | 24.00 | 0.01 | 1.674 | 4.95 | 0.23 | 7.5 | 92.5 | 0.1 | -2.90 | 0.87 | 0.88 | 4.15 | 2.8 | 0.006 | 0.66 | 3.0 | 0.04 | 23.94 | 0.01 | 1.370 | 12.70 | 2.54 | 6.3 | 93.7 | 0.0 | -0.38 | 1.25 | 0.88 | 0.92 | 3.79 | 152820 | 6298 | 58 | 4843 | 0 | 0 | 0 | logfile |
✔ | 5UYN | 8618 | 2024-03-02 | 2017-02-24 | 4.0 | 4.51 | 4.60 | 3.6 | 0.007 | 1.03 | 0.0 | 0.09 | 22.35 | 0.01 | 2.337 | 13.33 | 1.31 | 13.9 | 83.2 | 2.9 | -5.06 | 0.86 | 0.79 | — | 3.6 | 0.005 | 0.77 | 2.0 | 0.04 | 24.01 | 0.01 | 1.714 | 31.27 | 5.35 | 12.9 | 86.8 | 0.3 | -2.94 | 1.42 | 0.86 | 0.81 | — | 153717 | 6474 | 60 | 4809 | 1 | 0 | 0 | logfile |
✔ | 3JCE | 6550 | 2024-03-02 | 2015-12-01 | 3.2 | 4.36 | — | 14.0 | 0.008 | 0.88 | 0.0 | 0.04 | 22.68 | 0.00 | 1.106 | 32.64 | 0.47 | 10.4 | 84.8 | 4.8 | -2.93 | 0.33 | 0.04 | 0.16 | 3.1 | 0.006 | 1.17 | 5.0 | 0.05 | 25.14 | 0.01 | 1.590 | 49.53 | 2.65 | 13.3 | 85.5 | 1.2 | -3.72 | 1.89 | 0.70 | 0.41 | 0.15 | 154017 | 6546 | 59 | 4798 | 2 | 0 | 0 | logfile |
✔ | 5UYK | 8615 | 2024-03-02 | 2017-02-24 | 3.9 | 4.36 | 4.13 | 3.8 | 0.008 | 1.03 | 0.0 | 0.09 | 22.22 | 0.01 | 2.162 | 11.52 | 0.88 | 11.8 | 86.4 | 1.7 | -4.85 | 0.89 | 0.83 | 1.06 | 3.6 | 0.006 | 0.74 | 1.0 | 0.04 | 23.58 | 0.01 | 1.881 | 25.39 | 5.74 | 11.3 | 88.6 | 0.1 | -2.61 | 3.67 | 0.89 | 0.85 | 0.75 | 154412 | 6563 | 60 | 4812 | 1 | 0 | 0 | logfile |
✔ | 5UYM | 8617 | 2024-03-02 | 2017-02-24 | 3.2 | 4.16 | 3.27 | 3.2 | 0.007 | 1.00 | 0.0 | 0.08 | 22.19 | 0.01 | 1.331 | 12.54 | 1.17 | 11.5 | 86.5 | 2.0 | -5.21 | 0.91 | 0.82 | 2.50 | 3.2 | 0.005 | 0.68 | 0.0 | 0.04 | 22.98 | 0.00 | 1.782 | 18.57 | 5.35 | 10.1 | 89.7 | 0.2 | -1.76 | 1.78 | 0.95 | 0.91 | 1.83 | 154139 | 6476 | 72 | 4810 | 386 | 0 | 0 | logfile |
✔ | 5UYQ | 8620 | 2024-03-02 | 2017-02-24 | 3.8 | 4.28 | 4.16 | 3.7 | 0.007 | 1.05 | 0.0 | 0.09 | 22.52 | 0.01 | 1.314 | 14.34 | 1.29 | 13.9 | 83.4 | 2.7 | -5.24 | 0.86 | 0.79 | 0.45 | 3.5 | 0.005 | 0.78 | 1.0 | 0.04 | 23.98 | 0.01 | 1.096 | 30.27 | 5.43 | 13.4 | 86.4 | 0.2 | -3.16 | 0.73 | 0.87 | 0.82 | 0.42 | 153759 | 6476 | 63 | 4810 | 2 | 0 | 0 | logfile |
✔ | 5UYL | 8616 | 2024-03-02 | 2017-02-24 | 3.6 | 4.27 | 7.95 | 3.6 | 0.010 | 1.06 | 0.0 | 0.09 | 22.37 | 0.01 | 1.339 | 12.65 | 1.12 | 12.2 | 85.6 | 2.2 | -4.96 | 0.89 | 0.82 | 1.34 | 3.6 | 0.005 | 0.77 | 3.0 | 0.04 | 23.61 | 0.01 | 1.708 | 26.51 | 5.83 | 11.8 | 88.0 | 0.1 | -2.59 | 1.98 | 0.90 | 0.86 | 1.11 | 153753 | 6476 | 63 | 4810 | 1 | 0 | 0 | logfile |
✔ | 5UYP | 8619 | 2024-03-02 | 2017-02-24 | 3.9 | 4.42 | 4.29 | 3.6 | 0.007 | 1.07 | 0.0 | 0.09 | 22.43 | 0.01 | 1.318 | 13.07 | 1.57 | 14.3 | 82.6 | 3.1 | -5.15 | 0.87 | 0.79 | 0.53 | 3.6 | 0.004 | 0.73 | 0.0 | 0.04 | 23.84 | 0.01 | 1.030 | 28.72 | 5.39 | 12.3 | 87.6 | 0.2 | -3.02 | 0.77 | 0.87 | 0.82 | 0.39 | 153780 | 6476 | 63 | 4811 | 1 | 0 | 0 | logfile |
✔ | 5KPX | 8282 | 2024-03-02 | 2016-07-05 | 3.9 | 5.30 | 4.08 | 3.8 | 0.008 | 1.18 | 6.0 | 0.09 | 22.84 | 0.01 | 2.087 | 29.88 | 0.58 | 13.2 | 80.2 | 6.6 | -4.56 | 0.90 | 0.77 | 0.50 | 4.0 | 0.006 | 0.80 | 1.0 | 0.04 | 23.90 | 0.01 | 1.550 | 36.46 | 4.53 | 11.5 | 87.5 | 1.0 | -2.35 | 1.08 | 0.94 | 0.90 | 0.13 | 154603 | 6623 | 59 | 4812 | 0 | 0 | 0 | logfile |
✔ | 6U2L | 20623 | 2024-03-02 | 2019-08-20 | 2.83 | 2.89 | 2.94 | 2.9 | 0.009 | 1.03 | 0.0 | 0.06 | 10.25 | 0.01 | 2.351 | 3.16 | 0.19 | 7.1 | 92.9 | 0.0 | -3.75 | 0.78 | 0.84 | 3.92 | 2.9 | 0.006 | 0.92 | 9.0 | 0.05 | 15.78 | 0.01 | 1.978 | 8.59 | 3.53 | 6.7 | 93.3 | 0.0 | -0.89 | 0.69 | 0.80 | 0.87 | 3.28 | 153756 | 19616 | 96 | 0 | 96 | 0 | 0 | logfile |
✔ | 7UG7 | 26486 | 2024-03-02 | 2022-03-24 | 2.58 | 3.04 | 2.86 | 2.8 | 0.009 | 1.11 | 8.0 | 0.09 | 23.18 | 0.02 | 1.456 | 3.67 | 2.15 | 3.2 | 96.7 | 0.1 | 0.05 | 0.84 | 0.88 | 2.79 | 2.9 | 0.006 | 0.72 | 3.0 | 0.04 | 22.60 | 0.01 | 1.821 | 10.70 | 4.16 | 3.3 | 96.7 | 0.0 | 0.06 | 0.53 | 0.84 | 0.90 | 2.93 | 154353 | 6785 | 70 | 4701 | 420 | 0 | 0 | logfile |
✔ | 7Z4F | 14495 | 2024-03-02 | 2022-03-03 | 4.2 | 4.06 | 5.31 | 3.9 | 0.006 | 0.83 | 24.0 | 0.05 | 14.46 | 0.01 | 0.140 | 45.30 | 0.97 | 8.4 | 90.6 | 0.9 | -2.35 | 0.75 | 0.63 | — | 3.9 | 0.014 | 0.90 | 2.0 | 0.05 | 14.35 | 0.01 | 2.023 | 30.18 | 0.00 | 13.1 | 86.3 | 0.6 | -2.61 | 1.00 | 0.77 | 0.72 | — | 154392 | 21600 | 66 | 0 | 0 | 0 | 0 | logfile |