Table showing results for April 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6REY	4860	2021-04-01	2019-04-12	3.0	3.50	—	3.4	0.009	1.02	2.0	0.06	9.91	0.01	1.394	4.51	0.71	6.9	93.0	0.1	-4.99	0.76	0.87	4.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	70722	9562	32	0	4	0	0	logfile
✔	6SLU	10240	2021-04-01	2019-08-20	4.7	4.88	4.61	4.8	0.003	0.64	0.0	0.04	9.23	0.00	1.454	9.68	0.18	1.3	98.7	0.0	-1.03	0.69	0.77	—	4.7	0.004	0.88	0.0	0.05	13.52	0.01	2.162	18.25	0.00	3.6	96.4	0.0	-0.27	1.82	0.72	0.81	—	10336	1320	6	0	0	0	0	logfile
✔	6CB1	7445	2021-04-01	2018-02-01	4.6	4.77	—	4.6	0.006	1.02	0.0	0.06	16.94	0.00	0.266	5.93	0.00	5.0	94.8	0.1	-2.68	0.66	0.49	—	4.5	0.006	0.88	0.0	0.05	19.11	0.00	1.996	27.02	0.00	12.5	87.4	0.0	-2.10	2.58	0.75	0.77	—	69945	6459	42	1615	694	0	0	logfile
✔	6WJ3	21687	2021-04-01	2020-04-11	3.9	4.46	4.05	4.2	0.007	0.50	0.0	0.04	12.60	0.00	2.210	8.10	0.00	4.7	95.2	0.1	-2.80	0.85	0.76	0.95	4.2	0.002	0.59	0.0	0.04	13.57	0.00	2.209	10.67	0.00	5.0	95.0	0.0	-0.14	1.76	0.86	0.77	1.15	8912	1168	10	1	1	0	0	logfile
✔	6UXA	20931	2021-04-01	2019-11-07	4.5	5.05	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.628	0.00	0.00	3.8	96.2	0.0	-2.56	0.71	0.63	—	6.0	0.002	0.63	0.0	0.05	3.30	0.00	2.242	3.25	0.00	2.5	97.5	0.0	2.65	4.60	0.72	0.66	—	10344	2104	8	0	0	0	0	logfile
✔	6XYE	10649	2021-04-01	2020-01-30	4.3	4.37	4.28	4.3	0.010	1.29	0.0	0.09	10.03	0.01	2.315	10.97	0.00	4.7	95.3	0.0	-3.09	0.71	0.69	—	4.3	0.004	0.74	0.0	0.05	12.59	0.01	2.149	14.74	0.00	8.4	91.6	0.0	-1.47	2.29	0.72	0.70	—	9834	1293	6	0	0	0	0	logfile
✔	6FU8	4319	2021-04-01	2018-02-26	3.2	4.42	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.0	0.003	0.68	0.0	0.04	13.81	0.00	2.188	8.06	0.00	7.5	91.2	1.2	-0.60	2.54	0.24	0.68	-0.23	1364	82	1	0	0	0	711	logfile
✔	6LN8	0927	2021-04-01	2019-12-28	3.1	3.26	3.33	3.3	0.003	0.53	0.0	0.04	12.81	0.00	2.051	6.74	0.00	3.0	97.0	0.0	-2.71	0.70	0.80	2.37	3.3	0.002	0.54	0.0	0.04	13.58	0.00	1.381	8.47	0.00	2.9	97.1	0.0	0.33	0.46	0.69	0.81	2.13	7739	1003	1	0	2	0	0	logfile
✔	6DW1	8923	2021-04-01	2018-06-26	3.1	3.36	—	3.3	0.005	0.89	0.0	0.05	11.31	0.01	2.304	4.67	0.00	5.7	94.3	0.0	-3.70	0.68	0.82	4.57	3.3	0.003	0.64	0.0	0.04	13.46	0.00	2.141	9.11	0.00	5.5	94.5	0.0	-1.27	1.19	0.69	0.84	4.54	8595	1046	9	0	24	0	0	logfile
✔	5W3J	8757	2021-04-01	2017-06-07	4.0	4.33	—	4.1	0.045	1.54	0.0	0.14	8.29	0.00	2.262	6.50	0.00	8.7	90.2	1.2	-5.17	0.60	0.82	—	4.0	0.008	1.11	0.0	0.05	11.24	0.01	1.575	30.50	0.13	7.4	92.2	0.3	-3.77	0.98	0.60	0.82	—	6913	867	4	1	3	0	0	logfile
✔	6UXB	20932	2021-04-01	2019-11-07	4.9	5.50	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.627	0.00	0.00	3.8	96.2	0.0	-2.56	0.74	0.69	—	6.0	0.002	0.58	0.0	0.05	2.95	0.00	2.400	2.26	0.00	1.9	98.1	0.0	2.93	2.33	0.76	0.73	—	10344	2104	8	0	0	0	0	logfile
✔	6VPS	21316	2021-04-01	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.89	6.11	2.7	0.002	0.49	0.0	0.03	18.34	0.00	2.371	4.47	0.00	6.9	93.1	0.0	-3.64	1.18	0.47	0.87	6.81	2736	279	9	0	0	0	0	logfile
✔	6VU5	21387	2021-04-01	2020-02-14	3.5	3.59	3.38	3.5	0.006	0.96	0.0	0.06	15.54	0.01	2.230	8.37	0.00	9.0	91.0	0.0	-4.94	0.72	0.75	1.82	3.5	0.003	0.69	0.0	0.04	14.81	0.00	2.162	12.51	0.00	6.7	93.3	0.0	-2.07	0.58	0.71	0.73	1.64	4657	576	2	0	27	0	0	logfile
✘	6WXV	21964	2021-04-01	2020-05-12	3.3	3.75	—	3.7	0.007	0.88	2.0	0.05	13.16	0.01	1.217	9.50	0.47	5.5	94.4	0.2	-4.42	0.71	0.77	2.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10605	1319	5	0	15	0	0	logfile
✘	5MM2	3528	2021-04-01	2016-12-08	2.7	12.53	1.51	—	0.011	1.29	0.0	0.07	10.78	0.01	1.325	19.49	0.54	12.1	87.0	0.8	-3.96	-0.08	-0.03	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6605	854	3	0	0	0	0	logfile
✔	5W3H	8756	2021-04-01	2017-06-07	4.0	4.09	—	4.0	0.007	1.18	0.0	0.05	14.77	0.01	1.046	4.38	0.94	3.8	95.7	0.5	-0.90	0.59	0.85	—	4.0	0.003	0.76	0.0	0.04	13.69	0.00	2.066	10.46	0.13	3.5	96.2	0.3	0.45	2.09	0.59	0.82	—	6876	867	4	1	3	0	0	logfile
✔	6PB4	20286	2021-04-01	2019-06-13	4.35	5.03	—	4.3	0.010	1.17	0.0	0.06	16.29	0.01	1.840	10.92	0.06	11.5	88.1	0.4	-4.77	0.69	0.44	—	4.2	0.003	0.66	0.0	0.04	16.25	0.00	1.341	14.82	0.00	7.9	91.9	0.2	-2.15	1.45	0.83	0.73	—	69922	4091	14	158	6	0	34409	logfile
✔	6XQo	22291	2021-04-01	2020-07-09	3.1	3.54	—	3.5	0.004	0.57	0.0	0.04	15.61	0.00	1.956	9.44	3.52	4.4	95.6	0.0	-2.83	0.76	0.75	2.70	3.5	0.003	0.61	0.0	0.04	13.88	0.00	2.196	8.47	0.00	2.4	97.6	0.0	0.49	0.71	0.78	0.77	1.92	4301	560	4	0	4	0	0	logfile
✔	6L48	0832	2021-04-01	2019-10-16	3.5	3.71	—	3.7	0.026	0.82	2.0	0.14	12.27	0.01	2.217	10.02	2.45	6.6	93.4	0.0	-3.38	0.64	0.74	1.87	3.7	0.004	0.81	0.0	0.04	13.56	0.01	2.135	11.50	0.00	6.3	93.7	0.0	-0.12	1.31	0.65	0.71	2.42	6528	794	4	0	2	0	0	logfile
✔	6LN5	0924	2021-04-01	2019-12-28	2.8	2.93	2.78	2.9	0.005	0.60	0.0	0.04	12.21	0.00	2.027	5.32	0.12	2.0	98.0	0.0	-4.16	0.68	0.83	3.56	3.0	0.002	0.53	0.0	0.04	12.71	0.00	2.254	5.64	0.00	1.6	98.4	0.0	0.74	1.33	0.69	0.85	3.14	7840	1011	1	0	4	0	0	logfile

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