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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7WB5 | 32395 | 2023-04-19 | 2021-12-15 | 3.7 | 3.89 | — | 3.9 | 0.011 | 1.41 | 0.0 | 0.09 | 18.47 | 0.02 | 2.188 | 18.30 | 14.00 | 18.2 | 79.6 | 2.2 | -4.90 | 0.61 | 0.78 | 2.04 | 3.9 | 0.004 | 0.83 | 0.0 | 0.04 | 16.86 | 0.01 | 2.186 | 16.09 | 0.00 | 10.4 | 89.6 | 0.0 | -3.57 | 1.62 | 0.61 | 0.77 | 2.22 | 3256 | 408 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 7WRo | 32734 | 2023-04-19 | 2022-01-27 | 3.4 | 3.62 | — | 3.6 | 0.008 | 1.11 | 0.0 | 0.07 | 13.65 | 0.01 | 2.309 | 7.42 | 0.00 | 7.6 | 92.4 | 0.0 | -1.94 | 0.58 | 0.76 | 2.56 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 15.33 | 0.00 | 2.268 | 13.22 | 0.87 | 3.9 | 96.1 | 0.0 | -0.99 | 0.34 | 0.58 | 0.77 | 2.22 | 3179 | 412 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UiU | 26553 | 2023-04-19 | 2022-03-29 | 2.8 | 3.11 | 2.72 | 3.1 | 0.004 | 0.62 | 0.0 | 0.04 | 13.60 | 0.00 | 2.356 | 3.35 | 0.00 | 4.8 | 95.2 | 0.0 | -2.09 | 0.28 | 0.82 | 1.99 | 3.1 | 0.004 | 0.96 | 0.0 | 0.04 | 17.04 | 0.00 | 2.228 | 11.74 | 1.67 | 4.8 | 95.2 | 0.0 | -2.17 | 1.37 | 0.28 | 0.89 | 2.33 | 607 | 85 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7W5B | 32321 | 2023-04-19 | 2021-11-29 | 4.3 | 4.80 | — | 4.3 | 0.012 | 1.56 | 60.0 | 0.10 | 14.18 | 0.01 | 1.346 | 16.34 | 2.51 | 5.8 | 93.5 | 0.7 | -3.06 | 0.65 | 0.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106538 | 14610 | 62 | 416 | 19 | 0 | 0 | logfile |
✔ | 7UHB | 26511 | 2023-04-19 | 2022-03-26 | 3.0 | 3.17 | 2.97 | 3.2 | 0.011 | 1.36 | 3.0 | 0.12 | 9.92 | 0.00 | 2.562 | 5.08 | 1.42 | 3.0 | 96.6 | 0.4 | -0.52 | 0.52 | 0.54 | -0.09 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 16.83 | 0.00 | 2.223 | 8.94 | 2.84 | 3.0 | 97.0 | 0.0 | 0.69 | 2.47 | 0.69 | 0.83 | 3.49 | 2141 | 270 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 6MSD | 9217 | 2023-04-19 | 2018-10-16 | 3.2 | 3.65 | — | 3.0 | 0.007 | 1.05 | 2.0 | 0.06 | 11.55 | 0.01 | 2.019 | 5.69 | 0.50 | 8.3 | 91.5 | 0.3 | -5.07 | 0.84 | 0.81 | 2.24 | 3.0 | 0.004 | 0.76 | 0.0 | 0.04 | 14.33 | 0.00 | 1.854 | 13.86 | 0.34 | 7.9 | 92.0 | 0.1 | -0.89 | 0.79 | 0.86 | 0.87 | 1.84 | 105426 | 13526 | 55 | 0 | 12 | 0 | 0 | logfile |
✔ | 7WCU | 32429 | 2023-04-19 | 2021-12-20 | 3.09 | 3.27 | — | 3.2 | 0.009 | 1.15 | 0.0 | 0.06 | 13.76 | 0.01 | 2.289 | 6.61 | 0.29 | 7.8 | 92.2 | 0.0 | -2.63 | 0.61 | 0.82 | 3.98 | 3.2 | 0.003 | 0.67 | 0.0 | 0.04 | 15.48 | 0.00 | 2.187 | 11.80 | 0.29 | 6.9 | 93.1 | 0.0 | -2.18 | 0.48 | 0.61 | 0.82 | 3.47 | 3248 | 416 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W37 | 32272 | 2023-04-19 | 2021-11-25 | 3.0 | 4.26 | — | 2.8 | 0.004 | 0.80 | 0.0 | 0.05 | 13.99 | 0.01 | 1.712 | 5.02 | 0.15 | 5.8 | 94.1 | 0.1 | -0.60 | 0.85 | 0.84 | 2.30 | 2.8 | 0.004 | 0.64 | 0.0 | 0.04 | 15.35 | 0.00 | 1.813 | 9.96 | 0.76 | 6.3 | 93.7 | 0.1 | 0.87 | 0.33 | 0.88 | 0.89 | 1.95 | 106025 | 13527 | 54 | 0 | 13 | 0 | 0 | logfile |
✔ | 5LiJ | 4054 | 2023-04-19 | 2016-07-14 | 4.2 | 3.63 | — | 4.2 | 0.009 | 2.92 | 4.0 | 0.17 | 15.82 | 0.01 | 2.249 | 25.64 | 0.00 | 10.7 | 89.3 | 0.0 | -6.36 | 0.85 | 0.76 | — | 3.8 | 0.005 | 1.18 | 0.0 | 0.04 | 10.31 | 0.00 | 2.148 | 15.12 | 0.00 | 32.0 | 68.0 | 0.0 | -5.66 | 1.48 | 0.86 | 0.78 | — | 761 | 152 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R23 | 4708 | 2023-04-19 | 2019-03-15 | 4.9 | 4.57 | — | 4.6 | 0.006 | 1.07 | 0.0 | 0.05 | 16.56 | 0.01 | 2.332 | 7.52 | 0.00 | 7.9 | 92.1 | 0.0 | -4.61 | 0.60 | 0.75 | — | 4.6 | 0.003 | 0.61 | 0.0 | 0.04 | 16.41 | 0.00 | 2.466 | 11.77 | 0.00 | 9.0 | 91.0 | 0.0 | -0.07 | 3.42 | 0.60 | 0.74 | — | 1518 | 182 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WCK | 32423 | 2023-04-19 | 2021-12-20 | 3.49 | 3.79 | — | 3.6 | 0.008 | 1.35 | 1.0 | 0.07 | 13.91 | 0.01 | 2.057 | 11.02 | 0.28 | 7.6 | 90.7 | 1.7 | -3.09 | 0.67 | 0.79 | 2.16 | 3.6 | 0.003 | 0.79 | 0.0 | 0.05 | 15.11 | 0.01 | 2.241 | 14.95 | 0.00 | 7.4 | 92.2 | 0.5 | -2.25 | 0.48 | 0.68 | 0.81 | 2.12 | 3245 | 416 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6W6M | 21559 | 2023-04-19 | 2020-03-17 | 2.7 | 2.83 | 2.64 | 2.8 | 0.008 | 1.02 | 14.0 | 0.06 | 12.30 | 0.01 | 1.953 | 13.25 | 2.97 | 7.8 | 92.2 | 0.0 | -3.02 | 0.62 | 0.73 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43638 | 5768 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Y7K | 33668 | 2023-04-19 | 2022-06-22 | 4.4 | 4.96 | 5.46 | 4.3 | 0.010 | 1.63 | 0.0 | 0.07 | 13.11 | 0.01 | 2.215 | 33.93 | 3.90 | 10.3 | 86.1 | 3.6 | -2.50 | 0.71 | 0.63 | — | 4.3 | 0.003 | 0.73 | 0.0 | 0.04 | 11.34 | 0.00 | 2.127 | 13.54 | 0.35 | 6.0 | 93.8 | 0.2 | -1.28 | 1.66 | 0.73 | 0.67 | — | 2942 | 422 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YJ5 | 10816 | 2023-04-19 | 2020-04-02 | 3.5 | 2.92 | 3.56 | 3.3 | 0.007 | 0.87 | 0.0 | 0.05 | 13.19 | 0.01 | 2.183 | 4.22 | 0.00 | 12.5 | 87.5 | 0.0 | -5.13 | 0.42 | 0.62 | 3.01 | 3.3 | 0.007 | 0.81 | 0.0 | 0.05 | 15.31 | 0.01 | 2.257 | 11.88 | 0.61 | 12.2 | 87.8 | 0.0 | -2.14 | 0.81 | 0.52 | 0.74 | 3.59 | 2061 | 306 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V22 | 31634 | 2023-04-19 | 2021-08-07 | 3.38 | 3.61 | — | 3.6 | 0.003 | 0.66 | 0.0 | 0.04 | 14.10 | 0.00 | 2.236 | 8.81 | 0.46 | 12.1 | 87.5 | 0.4 | -2.81 | 0.53 | 0.77 | 4.24 | 3.6 | 0.004 | 0.70 | 0.0 | 0.05 | 16.03 | 0.00 | 2.170 | 11.14 | 0.46 | 13.4 | 86.2 | 0.4 | -2.46 | 0.55 | 0.53 | 0.80 | 3.78 | 1958 | 240 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FU8 | 4319 | 2023-04-19 | 2018-02-26 | 3.2 | 4.43 | 2.98 | 3.8 | 0.013 | 2.11 | 2.0 | 0.10 | 20.18 | 0.02 | 2.617 | 1.47 | 2.78 | 11.2 | 86.2 | 2.5 | -3.87 | 0.17 | 0.42 | 2.23 | 4.1 | 0.004 | 0.85 | 0.0 | 0.04 | 15.02 | 0.00 | 2.243 | 16.86 | 0.00 | 11.2 | 87.5 | 1.2 | -1.85 | 3.09 | 0.23 | 0.62 | -0.89 | 1364 | 82 | 1 | 0 | 0 | 0 | 711 | logfile |
✔ | 6RE8 | 4845 | 2023-04-19 | 2019-04-12 | 3.8 | 3.75 | — | 3.8 | 0.006 | 0.86 | 0.0 | 0.05 | 14.58 | 0.01 | 1.985 | 5.76 | 0.21 | 4.3 | 95.5 | 0.2 | -4.12 | 0.67 | 0.81 | 1.73 | 3.7 | 0.004 | 0.67 | 0.0 | 0.04 | 16.16 | 0.00 | 1.859 | 12.39 | 0.41 | 4.7 | 95.3 | 0.1 | -0.18 | 1.22 | 0.67 | 0.82 | 1.37 | 53720 | 7099 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6RD4 | 4805 | 2023-04-19 | 2019-04-12 | 2.9 | 2.95 | — | 2.9 | 0.014 | 1.11 | 0.0 | 0.07 | 14.22 | 0.01 | 0.776 | 6.62 | 0.69 | 4.7 | 95.0 | 0.2 | -5.13 | 0.74 | 0.83 | 3.17 | 3.0 | 0.003 | 0.67 | 0.0 | 0.04 | 16.39 | 0.00 | 1.899 | 10.11 | 1.76 | 3.6 | 96.3 | 0.1 | 0.72 | 0.63 | 0.77 | 0.87 | 2.78 | 107552 | 14206 | 82 | 0 | 22 | 56 | 0 | logfile |
✔ | 7LY0 | 23581 | 2023-04-19 | 2021-03-05 | 2.6 | 2.57 | 2.63 | 2.7 | 0.012 | 1.19 | 0.0 | 0.08 | 9.79 | 0.01 | 2.515 | 0.55 | 0.36 | 1.2 | 98.8 | 0.0 | 1.70 | 0.61 | 0.70 | 5.23 | 2.7 | 0.005 | 0.71 | 0.0 | 0.05 | 15.89 | 0.00 | 2.125 | 8.84 | 2.86 | 2.7 | 97.3 | 0.0 | 0.06 | 1.63 | 0.69 | 0.76 | 4.26 | 2805 | 354 | 5 | 0 | 6 | 0 | 0 | logfile |
✔ | 7JVA | 22497 | 2023-04-19 | 2020-08-20 | 3.6 | 3.93 | 3.68 | 3.9 | 0.016 | 1.51 | 0.0 | 0.09 | 10.09 | 0.01 | 2.398 | 0.80 | 0.30 | 1.0 | 98.8 | 0.2 | 0.87 | 0.84 | 0.81 | 3.50 | 3.9 | 0.004 | 0.72 | 0.0 | 0.04 | 14.75 | 0.00 | 2.198 | 8.95 | 0.61 | 3.6 | 96.4 | 0.0 | -0.18 | 0.69 | 0.85 | 0.82 | 2.55 | 3248 | 420 | 4 | 0 | 3 | 0 | 0 | logfile |