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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6oUA | 20200 | 2023-11-13 | 2019-05-04 | 4.18 | 4.32 | — | 4.3 | 0.008 | 1.37 | 1.0 | 0.07 | 13.97 | 0.01 | 2.294 | 7.03 | 2.35 | 17.4 | 82.3 | 0.3 | -5.89 | 0.72 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5208 | 637 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SLQ | 25198 | 2023-11-13 | 2021-10-24 | 3.7 | 3.95 | — | 3.9 | 0.011 | 1.16 | 1.0 | 0.06 | 14.97 | 0.01 | 2.144 | 6.53 | 1.35 | 3.7 | 96.3 | 0.0 | -2.83 | 0.74 | 0.70 | 2.35 | 3.9 | 0.002 | 0.57 | 0.0 | 0.04 | 15.85 | 0.01 | 1.369 | 9.36 | 0.22 | 4.8 | 95.2 | 0.0 | 0.01 | 1.31 | 0.74 | 0.72 | 1.83 | 5451 | 559 | 4 | 50 | 1 | 0 | 0 | logfile |
✘ | 7SWP | 25478 | 2023-11-13 | 2021-11-20 | 3.8 | 3.74 | — | 4.0 | 0.008 | 0.92 | 0.0 | 0.05 | 12.87 | 0.01 | 2.202 | 40.14 | 0.00 | 12.1 | 87.9 | 0.0 | -2.17 | 0.51 | 0.71 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3372 | 436 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KNT | 22962 | 2023-11-13 | 2020-11-06 | 3.15 | 4.00 | 3.32 | 3.7 | 0.004 | 0.75 | 0.0 | 0.05 | 14.56 | 0.00 | 2.116 | 11.51 | 0.74 | 3.6 | 96.4 | 0.0 | -0.48 | 0.58 | 0.75 | 1.64 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 16.11 | 0.00 | 2.240 | 12.59 | 0.49 | 3.2 | 96.8 | 0.0 | 0.60 | 0.45 | 0.57 | 0.76 | 0.61 | 3716 | 455 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ZEU | 6923 | 2023-11-13 | 2018-02-28 | 3.7 | 3.76 | — | 3.7 | 0.007 | 1.11 | 0.0 | 0.05 | 16.39 | 0.01 | 1.086 | 17.26 | 1.40 | 8.6 | 90.3 | 1.1 | -4.22 | 0.59 | 0.75 | 1.73 | 3.7 | 0.009 | 0.96 | 0.0 | 0.05 | 16.58 | 0.01 | 1.978 | 18.25 | 1.70 | 10.9 | 88.8 | 0.3 | -1.44 | 1.36 | 0.63 | 0.81 | 1.59 | 52954 | 2406 | 22 | 1583 | 0 | 0 | 0 | logfile |
✔ | 7SQT | 25394 | 2023-11-13 | 2021-11-06 | 4.0 | 7.13 | 4.01 | 3.5 | 0.010 | 0.70 | 0.0 | 0.05 | 15.78 | 0.01 | 0.902 | 2.31 | 1.25 | 2.5 | 97.5 | 0.0 | 1.39 | 0.94 | 0.84 | — | 3.4 | 0.003 | 0.76 | 0.0 | 0.04 | 15.49 | 0.00 | 2.135 | 11.69 | 0.18 | 2.3 | 97.7 | 0.0 | 1.50 | 3.03 | 0.93 | 0.86 | — | 107136 | 13752 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HU7 | 0273 | 2023-11-13 | 2018-10-05 | 2.8 | 2.82 | 2.83 | 2.9 | 0.008 | 0.78 | 0.0 | 0.05 | 9.81 | 0.01 | 2.130 | 10.26 | 0.36 | 2.7 | 96.8 | 0.5 | -3.47 | 0.49 | 0.84 | 4.61 | 2.9 | 0.003 | 0.61 | 0.0 | 0.04 | 15.33 | 0.00 | 2.301 | 9.54 | 2.19 | 2.2 | 97.5 | 0.3 | 2.86 | 1.61 | 0.53 | 0.87 | 3.58 | 4890 | 609 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S8U | 24922 | 2023-11-13 | 2021-09-19 | 3.7 | 3.97 | — | 3.9 | 0.008 | 1.19 | 1.0 | 0.07 | 14.00 | 0.01 | 2.243 | 13.10 | 4.56 | 8.3 | 90.5 | 1.2 | -1.14 | 0.48 | 0.59 | 0.59 | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 16.32 | 0.01 | 2.069 | 18.36 | 0.88 | 9.6 | 89.9 | 0.5 | -0.50 | 1.41 | 0.51 | 0.62 | 0.54 | 5210 | 667 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RB3 | 24393 | 2023-11-13 | 2021-07-05 | 3.1 | 3.16 | — | 3.2 | 0.008 | 1.17 | 1.0 | 0.05 | 16.70 | 0.01 | 2.021 | 8.07 | 1.30 | 3.0 | 97.0 | 0.0 | 1.44 | 0.79 | 0.85 | 2.33 | 3.2 | 0.003 | 0.57 | 0.0 | 0.04 | 16.41 | 0.00 | 2.162 | 4.57 | 0.78 | 2.3 | 97.7 | 0.0 | 1.87 | 0.31 | 0.79 | 0.85 | 2.08 | 5110 | 730 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8GYW | 34378 | 2023-11-13 | 2022-09-24 | 3.9 | 3.93 | 3.77 | 4.0 | 0.008 | 1.46 | 0.0 | 0.08 | 15.18 | 0.02 | 2.008 | 6.48 | 0.30 | 0.8 | 99.2 | 0.0 | 1.24 | 0.46 | 0.73 | 1.92 | 3.9 | 0.003 | 0.67 | 0.0 | 0.04 | 16.46 | 0.00 | 1.170 | 13.03 | 1.21 | 1.7 | 98.3 | 0.0 | 2.64 | 1.27 | 0.50 | 0.76 | 0.83 | 6076 | 760 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8ERP | 28557 | 2023-11-13 | 2022-10-12 | 3.7 | 3.96 | 3.35 | 4.0 | 0.004 | 0.86 | 0.0 | 0.04 | 17.74 | 0.01 | 2.016 | 7.49 | 0.00 | 5.8 | 94.2 | 0.0 | 0.16 | 0.66 | 0.80 | 2.15 | 4.0 | 0.003 | 0.66 | 0.0 | 0.04 | 16.55 | 0.00 | 1.984 | 5.08 | 0.32 | 7.2 | 92.8 | 0.0 | 1.09 | 1.62 | 0.66 | 0.82 | 1.77 | 6056 | 728 | 4 | 0 | 26 | 0 | 0 | logfile |
✔ | 6VU5 | 21387 | 2023-11-13 | 2020-02-14 | 3.5 | 3.59 | 3.38 | 3.5 | 0.007 | 0.99 | 0.0 | 0.06 | 15.26 | 0.01 | 2.230 | 8.37 | 0.00 | 9.0 | 91.0 | 0.0 | -4.94 | 0.72 | 0.75 | 1.82 | 3.5 | 0.003 | 0.71 | 0.0 | 0.04 | 16.93 | 0.00 | 2.177 | 15.77 | 1.05 | 5.6 | 94.4 | 0.0 | -2.22 | 0.54 | 0.71 | 0.73 | 0.83 | 4657 | 576 | 2 | 0 | 27 | 0 | 0 | logfile |
✔ | 7YNM | 33966 | 2023-11-13 | 2022-07-31 | 2.9 | 2.93 | 2.40 | 3.1 | 0.012 | 0.99 | 0.0 | 0.05 | 9.29 | 0.00 | 2.219 | 39.00 | 0.00 | 3.6 | 96.4 | 0.0 | -2.80 | 0.45 | 0.70 | 4.24 | 3.1 | 0.004 | 0.71 | 0.0 | 0.05 | 15.50 | 0.00 | 2.104 | 11.58 | 6.10 | 7.8 | 92.2 | 0.0 | -2.35 | 1.68 | 0.49 | 0.78 | 4.54 | 3528 | 488 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 6XPE | 22286 | 2023-11-13 | 2020-07-08 | 4.1 | 4.23 | — | 4.2 | 0.006 | 0.82 | 0.0 | 0.04 | 14.30 | 0.00 | 1.492 | 20.11 | 2.08 | 10.6 | 88.1 | 1.3 | -5.36 | 0.60 | 0.84 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 13.58 | 0.00 | 1.803 | 10.92 | 0.00 | 5.3 | 94.7 | 0.0 | -0.18 | 2.62 | 0.61 | 0.82 | — | 4292 | 554 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 7SLP | 25197 | 2023-11-13 | 2021-10-24 | 4.1 | 4.19 | — | 4.2 | 0.008 | 1.22 | 1.0 | 0.07 | 17.08 | 0.01 | 2.221 | 7.09 | 1.77 | 4.2 | 95.3 | 0.5 | -3.76 | 0.62 | 0.56 | — | 4.1 | 0.004 | 0.73 | 0.0 | 0.04 | 15.82 | 0.01 | 2.187 | 12.45 | 0.00 | 6.2 | 93.8 | 0.0 | -0.61 | 1.47 | 0.72 | 0.73 | — | 5176 | 561 | 4 | 37 | 0 | 0 | 0 | logfile |
✔ | 6LYY | 30019 | 2023-11-13 | 2020-02-16 | 3.2 | 3.40 | — | 3.9 | 0.010 | 1.16 | 9.0 | 0.10 | 13.41 | 0.01 | 2.152 | 14.46 | 0.90 | 8.3 | 91.7 | 0.0 | -3.75 | 0.38 | 0.51 | 1.45 | 3.7 | 0.003 | 0.73 | 0.0 | 0.04 | 15.57 | 0.00 | 2.234 | 10.71 | 1.20 | 4.9 | 95.1 | 0.0 | 0.23 | 1.65 | 0.46 | 0.67 | 1.62 | 4104 | 597 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7CYH | 30500 | 2023-11-13 | 2020-09-03 | 3.9 | 4.13 | — | 4.1 | 0.011 | 1.18 | 0.0 | 0.06 | 9.76 | 0.01 | 2.087 | 28.64 | 0.87 | 9.8 | 89.7 | 0.5 | -4.10 | 0.51 | 0.61 | 2.53 | 4.1 | 0.003 | 0.86 | 0.0 | 0.05 | 14.77 | 0.00 | 2.133 | 15.03 | 1.16 | 7.7 | 92.1 | 0.2 | -1.79 | 1.07 | 0.57 | 0.74 | 1.79 | 3241 | 423 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8A01 | 15044 | 2023-11-13 | 2022-05-26 | 3.2 | 3.25 | 3.20 | 3.2 | 0.002 | 0.44 | 0.0 | 0.05 | 14.81 | 0.00 | 2.289 | 4.13 | 0.00 | 2.0 | 98.0 | 0.0 | 0.02 | 0.48 | 0.86 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5511 | 717 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SB2 | 24961 | 2023-11-13 | 2021-09-23 | 3.4 | 3.66 | 3.14 | 3.3 | 0.007 | 0.79 | 0.0 | 0.04 | 14.92 | 0.00 | 2.178 | 23.65 | 0.00 | 8.4 | 91.4 | 0.2 | -0.29 | 0.83 | 0.84 | 1.22 | 3.3 | 0.003 | 0.72 | 0.0 | 0.04 | 16.36 | 0.00 | 2.237 | 17.31 | 0.40 | 5.9 | 94.1 | 0.0 | 0.78 | 0.47 | 0.82 | 0.85 | 0.71 | 4715 | 598 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WFQ | 21652 | 2023-11-13 | 2020-04-03 | 3.9 | 4.88 | 3.77 | 3.9 | 0.002 | 0.49 | 0.0 | 0.03 | 16.66 | 0.00 | 2.265 | 8.11 | 0.80 | 4.3 | 95.7 | 0.0 | -2.49 | 0.84 | 0.78 | 0.76 | 3.9 | 0.004 | 0.94 | 0.0 | 0.04 | 19.01 | 0.00 | 2.180 | 23.34 | 1.60 | 7.0 | 93.0 | 0.0 | -0.54 | 1.00 | 0.85 | 0.81 | 0.67 | 4164 | 447 | 4 | 30 | 0 | 0 | 0 | logfile |