Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WB5	32395	2023-04-19	2021-12-15	3.7	3.89	—	3.9	0.011	1.41	0.0	0.09	18.47	0.02	2.188	18.30	14.00	18.2	79.6	2.2	-4.90	0.61	0.78	2.04	3.9	0.004	0.83	0.0	0.04	16.86	0.01	2.186	16.09	0.00	10.4	89.6	0.0	-3.57	1.62	0.61	0.77	2.22	3256	408	4	0	3	0	0	logfile
✔	7WRo	32734	2023-04-19	2022-01-27	3.4	3.62	—	3.6	0.008	1.11	0.0	0.07	13.65	0.01	2.309	7.42	0.00	7.6	92.4	0.0	-1.94	0.58	0.76	2.56	3.6	0.003	0.62	0.0	0.04	15.33	0.00	2.268	13.22	0.87	3.9	96.1	0.0	-0.99	0.34	0.58	0.77	2.22	3179	412	3	0	0	0	0	logfile
✔	7UiU	26553	2023-04-19	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	3.35	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.1	0.004	0.96	0.0	0.04	17.04	0.00	2.228	11.74	1.67	4.8	95.2	0.0	-2.17	1.37	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile
✘	7W5B	32321	2023-04-19	2021-11-29	4.3	4.80	—	4.3	0.012	1.56	60.0	0.10	14.18	0.01	1.346	16.34	2.51	5.8	93.5	0.7	-3.06	0.65	0.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	106538	14610	62	416	19	0	0	logfile
✔	7UHB	26511	2023-04-19	2022-03-26	3.0	3.17	2.97	3.2	0.011	1.36	3.0	0.12	9.92	0.00	2.562	5.08	1.42	3.0	96.6	0.4	-0.52	0.52	0.54	-0.09	3.2	0.003	0.61	0.0	0.04	16.83	0.00	2.223	8.94	2.84	3.0	97.0	0.0	0.69	2.47	0.69	0.83	3.49	2141	270	3	0	3	0	0	logfile
✔	6MSD	9217	2023-04-19	2018-10-16	3.2	3.65	—	3.0	0.007	1.05	2.0	0.06	11.55	0.01	2.019	5.69	0.50	8.3	91.5	0.3	-5.07	0.84	0.81	2.24	3.0	0.004	0.76	0.0	0.04	14.33	0.00	1.854	13.86	0.34	7.9	92.0	0.1	-0.89	0.79	0.86	0.87	1.84	105426	13526	55	0	12	0	0	logfile
✔	7WCU	32429	2023-04-19	2021-12-20	3.09	3.27	—	3.2	0.009	1.15	0.0	0.06	13.76	0.01	2.289	6.61	0.29	7.8	92.2	0.0	-2.63	0.61	0.82	3.98	3.2	0.003	0.67	0.0	0.04	15.48	0.00	2.187	11.80	0.29	6.9	93.1	0.0	-2.18	0.48	0.61	0.82	3.47	3248	416	3	0	0	0	0	logfile
✔	7W37	32272	2023-04-19	2021-11-25	3.0	4.26	—	2.8	0.004	0.80	0.0	0.05	13.99	0.01	1.712	5.02	0.15	5.8	94.1	0.1	-0.60	0.85	0.84	2.30	2.8	0.004	0.64	0.0	0.04	15.35	0.00	1.813	9.96	0.76	6.3	93.7	0.1	0.87	0.33	0.88	0.89	1.95	106025	13527	54	0	13	0	0	logfile
✔	5LiJ	4054	2023-04-19	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.005	1.18	0.0	0.04	10.31	0.00	2.148	15.12	0.00	32.0	68.0	0.0	-5.66	1.48	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	6R23	4708	2023-04-19	2019-03-15	4.9	4.57	—	4.6	0.006	1.07	0.0	0.05	16.56	0.01	2.332	7.52	0.00	7.9	92.1	0.0	-4.61	0.60	0.75	—	4.6	0.003	0.61	0.0	0.04	16.41	0.00	2.466	11.77	0.00	9.0	91.0	0.0	-0.07	3.42	0.60	0.74	—	1518	182	2	0	0	0	0	logfile
✔	7WCK	32423	2023-04-19	2021-12-20	3.49	3.79	—	3.6	0.008	1.35	1.0	0.07	13.91	0.01	2.057	11.02	0.28	7.6	90.7	1.7	-3.09	0.67	0.79	2.16	3.6	0.003	0.79	0.0	0.05	15.11	0.01	2.241	14.95	0.00	7.4	92.2	0.5	-2.25	0.48	0.68	0.81	2.12	3245	416	3	0	0	0	0	logfile
✘	6W6M	21559	2023-04-19	2020-03-17	2.7	2.83	2.64	2.8	0.008	1.02	14.0	0.06	12.30	0.01	1.953	13.25	2.97	7.8	92.2	0.0	-3.02	0.62	0.73	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43638	5768	14	0	0	0	0	logfile
✔	7Y7K	33668	2023-04-19	2022-06-22	4.4	4.96	5.46	4.3	0.010	1.63	0.0	0.07	13.11	0.01	2.215	33.93	3.90	10.3	86.1	3.6	-2.50	0.71	0.63	—	4.3	0.003	0.73	0.0	0.04	11.34	0.00	2.127	13.54	0.35	6.0	93.8	0.2	-1.28	1.66	0.73	0.67	—	2942	422	3	0	0	0	0	logfile
✔	6YJ5	10816	2023-04-19	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.22	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.007	0.81	0.0	0.05	15.31	0.01	2.257	11.88	0.61	12.2	87.8	0.0	-2.14	0.81	0.52	0.74	3.59	2061	306	1	0	0	0	0	logfile
✔	7V22	31634	2023-04-19	2021-08-07	3.38	3.61	—	3.6	0.003	0.66	0.0	0.04	14.10	0.00	2.236	8.81	0.46	12.1	87.5	0.4	-2.81	0.53	0.77	4.24	3.6	0.004	0.70	0.0	0.05	16.03	0.00	2.170	11.14	0.46	13.4	86.2	0.4	-2.46	0.55	0.53	0.80	3.78	1958	240	1	0	0	0	0	logfile
✔	6FU8	4319	2023-04-19	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.004	0.85	0.0	0.04	15.02	0.00	2.243	16.86	0.00	11.2	87.5	1.2	-1.85	3.09	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	6RE8	4845	2023-04-19	2019-04-12	3.8	3.75	—	3.8	0.006	0.86	0.0	0.05	14.58	0.01	1.985	5.76	0.21	4.3	95.5	0.2	-4.12	0.67	0.81	1.73	3.7	0.004	0.67	0.0	0.04	16.16	0.00	1.859	12.39	0.41	4.7	95.3	0.1	-0.18	1.22	0.67	0.82	1.37	53720	7099	37	0	11	0	0	logfile
✔	6RD4	4805	2023-04-19	2019-04-12	2.9	2.95	—	2.9	0.014	1.11	0.0	0.07	14.22	0.01	0.776	6.62	0.69	4.7	95.0	0.2	-5.13	0.74	0.83	3.17	3.0	0.003	0.67	0.0	0.04	16.39	0.00	1.899	10.11	1.76	3.6	96.3	0.1	0.72	0.63	0.77	0.87	2.78	107552	14206	82	0	22	56	0	logfile
✔	7LY0	23581	2023-04-19	2021-03-05	2.6	2.57	2.63	2.7	0.012	1.19	0.0	0.08	9.79	0.01	2.515	0.55	0.36	1.2	98.8	0.0	1.70	0.61	0.70	5.23	2.7	0.005	0.71	0.0	0.05	15.89	0.00	2.125	8.84	2.86	2.7	97.3	0.0	0.06	1.63	0.69	0.76	4.26	2805	354	5	0	6	0	0	logfile
✔	7JVA	22497	2023-04-19	2020-08-20	3.6	3.93	3.68	3.9	0.016	1.51	0.0	0.09	10.09	0.01	2.398	0.80	0.30	1.0	98.8	0.2	0.87	0.84	0.81	3.50	3.9	0.004	0.72	0.0	0.04	14.75	0.00	2.198	8.95	0.61	3.6	96.4	0.0	-0.18	0.69	0.85	0.82	2.55	3248	420	4	0	3	0	0	logfile

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