Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6oUA	20200	2023-11-13	2019-05-04	4.18	4.32	—	4.3	0.008	1.37	1.0	0.07	13.97	0.01	2.294	7.03	2.35	17.4	82.3	0.3	-5.89	0.72	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5208	637	3	0	0	0	0	logfile
✔	7SLQ	25198	2023-11-13	2021-10-24	3.7	3.95	—	3.9	0.011	1.16	1.0	0.06	14.97	0.01	2.144	6.53	1.35	3.7	96.3	0.0	-2.83	0.74	0.70	2.35	3.9	0.002	0.57	0.0	0.04	15.85	0.01	1.369	9.36	0.22	4.8	95.2	0.0	0.01	1.31	0.74	0.72	1.83	5451	559	4	50	1	0	0	logfile
✘	7SWP	25478	2023-11-13	2021-11-20	3.8	3.74	—	4.0	0.008	0.92	0.0	0.05	12.87	0.01	2.202	40.14	0.00	12.1	87.9	0.0	-2.17	0.51	0.71	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3372	436	3	0	0	0	0	logfile
✔	7KNT	22962	2023-11-13	2020-11-06	3.15	4.00	3.32	3.7	0.004	0.75	0.0	0.05	14.56	0.00	2.116	11.51	0.74	3.6	96.4	0.0	-0.48	0.58	0.75	1.64	3.8	0.003	0.68	0.0	0.04	16.11	0.00	2.240	12.59	0.49	3.2	96.8	0.0	0.60	0.45	0.57	0.76	0.61	3716	455	2	0	0	0	0	logfile
✔	5ZEU	6923	2023-11-13	2018-02-28	3.7	3.76	—	3.7	0.007	1.11	0.0	0.05	16.39	0.01	1.086	17.26	1.40	8.6	90.3	1.1	-4.22	0.59	0.75	1.73	3.7	0.009	0.96	0.0	0.05	16.58	0.01	1.978	18.25	1.70	10.9	88.8	0.3	-1.44	1.36	0.63	0.81	1.59	52954	2406	22	1583	0	0	0	logfile
✔	7SQT	25394	2023-11-13	2021-11-06	4.0	7.13	4.01	3.5	0.010	0.70	0.0	0.05	15.78	0.01	0.902	2.31	1.25	2.5	97.5	0.0	1.39	0.94	0.84	—	3.4	0.003	0.76	0.0	0.04	15.49	0.00	2.135	11.69	0.18	2.3	97.7	0.0	1.50	3.03	0.93	0.86	—	107136	13752	24	0	0	0	0	logfile
✔	6HU7	0273	2023-11-13	2018-10-05	2.8	2.82	2.83	2.9	0.008	0.78	0.0	0.05	9.81	0.01	2.130	10.26	0.36	2.7	96.8	0.5	-3.47	0.49	0.84	4.61	2.9	0.003	0.61	0.0	0.04	15.33	0.00	2.301	9.54	2.19	2.2	97.5	0.3	2.86	1.61	0.53	0.87	3.58	4890	609	7	0	0	0	0	logfile
✔	7S8U	24922	2023-11-13	2021-09-19	3.7	3.97	—	3.9	0.008	1.19	1.0	0.07	14.00	0.01	2.243	13.10	4.56	8.3	90.5	1.2	-1.14	0.48	0.59	0.59	3.9	0.004	0.86	0.0	0.05	16.32	0.01	2.069	18.36	0.88	9.6	89.9	0.5	-0.50	1.41	0.51	0.62	0.54	5210	667	1	0	0	0	0	logfile
✔	7RB3	24393	2023-11-13	2021-07-05	3.1	3.16	—	3.2	0.008	1.17	1.0	0.05	16.70	0.01	2.021	8.07	1.30	3.0	97.0	0.0	1.44	0.79	0.85	2.33	3.2	0.003	0.57	0.0	0.04	16.41	0.00	2.162	4.57	0.78	2.3	97.7	0.0	1.87	0.31	0.79	0.85	2.08	5110	730	2	0	1	0	0	logfile
✔	8GYW	34378	2023-11-13	2022-09-24	3.9	3.93	3.77	4.0	0.008	1.46	0.0	0.08	15.18	0.02	2.008	6.48	0.30	0.8	99.2	0.0	1.24	0.46	0.73	1.92	3.9	0.003	0.67	0.0	0.04	16.46	0.00	1.170	13.03	1.21	1.7	98.3	0.0	2.64	1.27	0.50	0.76	0.83	6076	760	4	0	6	0	0	logfile
✔	8ERP	28557	2023-11-13	2022-10-12	3.7	3.96	3.35	4.0	0.004	0.86	0.0	0.04	17.74	0.01	2.016	7.49	0.00	5.8	94.2	0.0	0.16	0.66	0.80	2.15	4.0	0.003	0.66	0.0	0.04	16.55	0.00	1.984	5.08	0.32	7.2	92.8	0.0	1.09	1.62	0.66	0.82	1.77	6056	728	4	0	26	0	0	logfile
✔	6VU5	21387	2023-11-13	2020-02-14	3.5	3.59	3.38	3.5	0.007	0.99	0.0	0.06	15.26	0.01	2.230	8.37	0.00	9.0	91.0	0.0	-4.94	0.72	0.75	1.82	3.5	0.003	0.71	0.0	0.04	16.93	0.00	2.177	15.77	1.05	5.6	94.4	0.0	-2.22	0.54	0.71	0.73	0.83	4657	576	2	0	27	0	0	logfile
✔	7YNM	33966	2023-11-13	2022-07-31	2.9	2.93	2.40	3.1	0.012	0.99	0.0	0.05	9.29	0.00	2.219	39.00	0.00	3.6	96.4	0.0	-2.80	0.45	0.70	4.24	3.1	0.004	0.71	0.0	0.05	15.50	0.00	2.104	11.58	6.10	7.8	92.2	0.0	-2.35	1.68	0.49	0.78	4.54	3528	488	12	0	8	0	0	logfile
✔	6XPE	22286	2023-11-13	2020-07-08	4.1	4.23	—	4.2	0.006	0.82	0.0	0.04	14.30	0.00	1.492	20.11	2.08	10.6	88.1	1.3	-5.36	0.60	0.84	—	4.2	0.003	0.66	0.0	0.04	13.58	0.00	1.803	10.92	0.00	5.3	94.7	0.0	-0.18	2.62	0.61	0.82	—	4292	554	4	0	8	0	0	logfile
✔	7SLP	25197	2023-11-13	2021-10-24	4.1	4.19	—	4.2	0.008	1.22	1.0	0.07	17.08	0.01	2.221	7.09	1.77	4.2	95.3	0.5	-3.76	0.62	0.56	—	4.1	0.004	0.73	0.0	0.04	15.82	0.01	2.187	12.45	0.00	6.2	93.8	0.0	-0.61	1.47	0.72	0.73	—	5176	561	4	37	0	0	0	logfile
✔	6LYY	30019	2023-11-13	2020-02-16	3.2	3.40	—	3.9	0.010	1.16	9.0	0.10	13.41	0.01	2.152	14.46	0.90	8.3	91.7	0.0	-3.75	0.38	0.51	1.45	3.7	0.003	0.73	0.0	0.04	15.57	0.00	2.234	10.71	1.20	4.9	95.1	0.0	0.23	1.65	0.46	0.67	1.62	4104	597	3	0	1	0	0	logfile
✔	7CYH	30500	2023-11-13	2020-09-03	3.9	4.13	—	4.1	0.011	1.18	0.0	0.06	9.76	0.01	2.087	28.64	0.87	9.8	89.7	0.5	-4.10	0.51	0.61	2.53	4.1	0.003	0.86	0.0	0.05	14.77	0.00	2.133	15.03	1.16	7.7	92.1	0.2	-1.79	1.07	0.57	0.74	1.79	3241	423	3	0	0	0	0	logfile
✘	8A01	15044	2023-11-13	2022-05-26	3.2	3.25	3.20	3.2	0.002	0.44	0.0	0.05	14.81	0.00	2.289	4.13	0.00	2.0	98.0	0.0	0.02	0.48	0.86	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5511	717	3	0	0	0	0	logfile
✔	7SB2	24961	2023-11-13	2021-09-23	3.4	3.66	3.14	3.3	0.007	0.79	0.0	0.04	14.92	0.00	2.178	23.65	0.00	8.4	91.4	0.2	-0.29	0.83	0.84	1.22	3.3	0.003	0.72	0.0	0.04	16.36	0.00	2.237	17.31	0.40	5.9	94.1	0.0	0.78	0.47	0.82	0.85	0.71	4715	598	2	0	0	0	0	logfile
✔	6WFQ	21652	2023-11-13	2020-04-03	3.9	4.88	3.77	3.9	0.002	0.49	0.0	0.03	16.66	0.00	2.265	8.11	0.80	4.3	95.7	0.0	-2.49	0.84	0.78	0.76	3.9	0.004	0.94	0.0	0.04	19.01	0.00	2.180	23.34	1.60	7.0	93.0	0.0	-0.54	1.00	0.85	0.81	0.67	4164	447	4	30	0	0	0	logfile

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