Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WRo	32734	2022-07-02	2022-01-27	3.4	3.62	—	3.6	0.008	1.11	0.0	0.07	13.65	0.01	2.309	7.58	0.00	7.6	92.4	0.0	-1.94	0.58	0.76	2.56	3.6	0.004	0.68	0.0	0.04	15.11	0.01	2.258	13.22	0.00	4.2	95.8	0.0	-1.18	0.33	0.59	0.78	2.40	3179	412	3	0	0	0	0	logfile
✔	7W5B	32321	2022-07-02	2021-11-29	4.3	4.80	—	4.3	0.012	1.56	60.0	0.10	14.18	0.01	1.346	16.46	2.51	5.8	93.5	0.7	-3.06	0.65	0.57	—	4.3	0.005	0.73	0.0	0.04	13.17	0.00	1.687	16.60	0.04	5.7	94.1	0.1	0.92	1.63	0.74	0.75	—	106538	14610	62	416	19	0	0	logfile
✔	6R23	4708	2022-07-02	2019-03-15	4.9	4.57	—	4.6	0.006	1.07	0.0	0.05	16.56	0.01	2.332	7.52	0.00	7.9	92.1	0.0	-4.61	0.60	0.75	—	4.6	0.003	0.59	0.0	0.03	16.52	0.00	2.361	7.85	0.00	6.7	93.3	0.0	0.29	3.60	0.60	0.73	—	1518	182	2	0	0	0	0	logfile
✔	6VHA	21201	2022-07-02	2020-01-09	4.3	4.35	—	7.8	0.007	1.02	0.0	0.05	15.14	0.01	2.319	26.84	2.13	12.4	87.6	0.0	-4.78	0.55	0.54	—	4.1	0.004	0.75	0.0	0.05	13.16	0.00	2.339	14.02	0.00	9.8	90.2	0.0	-4.32	3.38	0.57	0.60	—	2439	321	3	0	0	0	0	logfile
✘	6PoD	20412	2022-07-02	2019-07-03	4.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53637	3427	20	0	25	0	26898	logfile
✔	6oG3	20051	2022-07-02	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.006	1.22	0.0	0.00	8.59	0.00	2.605	57.07	0.00	14.1	85.9	0.0	-1.78	2.19	0.66	0.84	—	1215	396	4	0	9	0	0	logfile
✔	6TGP	10500	2022-07-02	2019-11-17	4.4	4.64	—	4.3	0.013	1.90	1.0	0.13	12.88	0.01	2.228	7.38	2.08	5.2	94.8	0.0	-3.36	0.45	0.85	—	4.1	0.005	0.79	0.0	0.04	12.86	0.00	2.270	20.30	0.00	5.2	94.8	0.0	0.17	1.84	0.44	0.79	—	1344	176	2	0	0	0	0	logfile
✔	6XTB	10618	2022-07-02	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.004	1.06	0.0	0.05	7.90	0.00	2.205	9.62	0.00	22.1	77.9	0.0	-5.53	2.43	0.34	0.64	—	1161	235	1	0	0	0	0	logfile
✔	6N37	9339	2022-07-02	2018-11-14	3.8	3.51	—	4.2	0.009	1.42	0.0	0.06	16.98	0.01	2.399	13.15	0.00	14.7	85.3	0.0	-5.92	0.51	0.77	3.18	3.6	0.004	0.78	0.0	0.04	18.43	0.00	2.266	20.72	0.80	11.2	88.8	0.0	-5.14	0.89	0.52	0.77	2.42	2580	360	10	0	0	0	0	logfile
✔	6N3B	9350	2022-07-02	2018-11-14	3.8	3.75	—	4.0	0.010	1.21	0.0	0.05	11.40	0.01	2.253	20.70	0.00	13.7	86.3	0.0	-5.17	0.41	0.71	2.90	4.0	0.005	0.87	0.0	0.04	16.51	0.01	2.102	26.34	1.51	13.2	86.8	0.0	-5.29	1.48	0.42	0.71	1.88	2735	385	10	0	0	0	0	logfile
✔	7W37	32272	2022-07-02	2021-11-25	3.0	4.26	—	2.8	0.004	0.80	0.0	0.05	13.99	0.01	1.712	5.08	0.15	5.8	94.1	0.1	-0.60	0.85	0.84	2.30	2.8	0.005	0.66	0.0	0.04	15.42	0.00	1.797	10.41	0.84	6.5	93.5	0.1	0.80	0.35	0.86	0.87	1.97	106025	13527	54	0	13	0	0	logfile
✘	7DGR	30674	2022-07-02	2020-11-12	4.6	5.38	—	4.5	0.013	1.55	17.0	0.08	12.73	0.01	1.167	30.91	2.47	13.5	84.5	2.0	-5.61	0.72	0.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	107305	13811	102	0	37	0	0	logfile
✔	7PQG	13593	2022-07-02	2021-09-21	3.7	4.20	—	4.0	0.004	0.88	0.0	0.05	12.56	0.01	2.204	28.36	0.28	7.4	92.6	0.0	-0.87	0.56	0.76	0.82	4.0	0.005	1.15	0.0	0.06	15.61	0.01	2.144	36.06	0.28	7.9	92.1	0.0	-1.40	1.22	0.56	0.77	0.82	3251	423	2	0	0	0	0	logfile
✔	7VU8	32126	2022-07-02	2021-11-01	3.0	4.24	3.77	4.4	0.009	1.19	0.0	0.07	11.96	0.01	2.308	9.19	4.64	9.5	90.5	0.0	-5.27	0.39	0.75	3.88	4.3	0.004	0.72	0.0	0.05	16.71	0.00	2.400	7.07	5.96	6.0	94.0	0.0	-1.74	1.18	0.39	0.78	3.40	1433	170	1	0	1	0	0	logfile
✔	7W38	32273	2022-07-02	2021-11-25	3.1	4.31	—	2.8	0.004	0.80	0.0	0.05	13.91	0.01	1.750	5.55	0.18	5.7	94.2	0.1	-0.59	0.84	0.80	2.24	2.8	0.004	0.62	0.0	0.04	15.14	0.00	1.824	10.83	0.17	6.0	93.9	0.1	0.76	0.77	0.87	0.87	1.89	106178	13539	55	0	13	0	0	logfile
✔	7UHB	26511	2022-07-02	2022-03-26	3.0	3.17	2.97	3.2	0.011	1.35	3.0	0.12	9.86	0.00	2.562	5.08	1.42	3.0	96.6	0.4	-0.52	0.52	0.54	-0.09	3.1	0.003	0.62	0.0	0.04	16.15	0.00	2.244	9.43	1.90	3.4	96.6	0.0	0.52	2.43	0.70	0.83	3.49	2141	270	3	0	3	0	0	logfile
✔	7QEV	13942	2022-07-02	2021-12-03	2.9	3.46	—	3.1	0.010	0.74	0.0	0.05	13.76	0.00	2.164	5.92	0.00	4.3	95.7	0.0	-0.15	0.79	0.86	3.19	3.1	0.003	0.66	0.0	0.04	15.95	0.00	2.153	5.61	1.17	2.9	97.1	0.0	2.25	1.67	0.79	0.86	2.57	3204	383	6	0	8	8	0	logfile
✔	7Z13	14439	2022-07-02	2022-02-24	3.4	3.29	—	3.3	0.003	0.66	2.0	0.04	15.72	0.00	1.997	7.37	0.13	3.8	96.1	0.0	-0.12	0.66	0.78	2.01	3.3	0.003	0.64	0.0	0.04	17.68	0.00	2.026	7.53	0.31	4.1	95.9	0.0	0.14	0.48	0.65	0.81	1.75	107381	13128	42	106	32	0	0	logfile
✔	5XY3	6784	2022-07-02	2017-07-06	3.2	3.24	—	3.2	0.006	1.04	7.0	0.09	17.01	0.00	1.123	6.27	3.45	6.0	92.7	1.3	-3.33	0.61	0.76	2.54	3.2	0.007	0.78	3.0	0.04	16.61	0.01	1.765	9.19	0.20	5.0	94.7	0.4	-1.09	0.61	0.77	0.84	2.24	107145	5917	43	2815	0	0	0	logfile
✘	5W7G	8780	2022-07-02	2017-06-19	4.5	4.20	—	4.2	0.015	1.17	0.0	0.07	15.16	0.01	2.165	7.63	0.45	1.2	98.8	0.0	-0.31	0.50	0.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53508	5397	44	504	0	0	0	logfile

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